Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804800 | XP_024631836.2 | 96.742 | 399 | 13 | 0 | 1 | 399 | 1 | 399 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804800 | A0A396JPB9 | 75.802 | 405 | 91 | 1 | 1 | 398 | 1 | 405 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031420 | Msa0804800 | 0.894968 | 1.496284e-75 | -8.615850e-47 |
| Msa0602990 | Msa0804800 | 0.813412 | 2.593774e-51 | -8.615850e-47 |
| Msa0724310 | Msa0804800 | 0.841165 | 5.605748e-58 | -8.615850e-47 |
| Msa0804800 | Msa1115870 | 0.842378 | 2.681970e-58 | -8.615850e-47 |
| Msa0198910 | Msa0804800 | 0.802280 | 6.046328e-49 | -8.615850e-47 |
| Msa0490140 | Msa0804800 | 0.809510 | 1.826355e-50 | -8.615850e-47 |
| Msa0514310 | Msa0804800 | 0.828837 | 7.198195e-55 | -8.615850e-47 |
| Msa0514320 | Msa0804800 | 0.805005 | 1.644413e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804800 | MtrunA17_Chr1g0172731 | 75.802 | 405 | 91 | 1 | 1 | 398 | 1 | 405 | 0.0 | 663 |
| Msa0804800 | MtrunA17_Chr1g0190171 | 75.062 | 405 | 94 | 1 | 1 | 398 | 1 | 405 | 0.0 | 659 |
| Msa0804800 | MtrunA17_Chr2g0321401 | 75.000 | 252 | 57 | 1 | 1 | 246 | 1 | 252 | 3.23e-143 | 408 |
| Msa0804800 | MtrunA17_Chr8g0334561 | 73.913 | 253 | 59 | 1 | 1 | 246 | 1 | 253 | 1.54e-141 | 404 |
| Msa0804800 | MtrunA17_Chr2g0285471 | 80.435 | 184 | 36 | 0 | 63 | 246 | 1 | 184 | 3.87e-110 | 321 |
| Msa0804800 | MtrunA17_Chr1g0182341 | 42.697 | 356 | 160 | 6 | 3 | 350 | 15 | 334 | 1.15e-90 | 278 |
| Msa0804800 | MtrunA17_Chr6g0478531 | 40.517 | 348 | 197 | 6 | 35 | 380 | 15 | 354 | 1.20e-83 | 260 |
| Msa0804800 | MtrunA17_Chr6g0477141 | 42.025 | 326 | 184 | 3 | 15 | 338 | 96 | 418 | 1.27e-83 | 263 |
| Msa0804800 | MtrunA17_Chr7g0226311 | 42.547 | 322 | 174 | 6 | 59 | 377 | 9 | 322 | 2.64e-74 | 234 |
| Msa0804800 | MtrunA17_Chr8g0391981 | 37.534 | 365 | 206 | 7 | 18 | 378 | 36 | 382 | 1.41e-70 | 228 |
| Msa0804800 | MtrunA17_Chr1g0207391 | 39.286 | 308 | 166 | 7 | 45 | 343 | 74 | 369 | 5.86e-67 | 218 |
| Msa0804800 | MtrunA17_Chr3g0140031 | 66.071 | 112 | 31 | 1 | 1 | 105 | 1 | 112 | 1.35e-47 | 158 |
| Msa0804800 | MtrunA17_Chr7g0267201 | 48.125 | 160 | 75 | 2 | 66 | 217 | 1 | 160 | 3.11e-47 | 159 |
| Msa0804800 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 342 | 399 | 1 | 58 | 3.74e-28 | 105 |
| Msa0804800 | MtrunA17_Chr1g0211031 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.72e-27 | 103 |
| Msa0804800 | MtrunA17_Chr8g0370251 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.72e-27 | 103 |
| Msa0804800 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 2.73e-26 | 100 |
| Msa0804800 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 3.15e-26 | 100 |
| Msa0804800 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 1.73e-19 | 84.7 |
| Msa0804800 | MtrunA17_Chr4g0018411 | 35.537 | 121 | 72 | 3 | 246 | 364 | 10 | 126 | 3.47e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804800 | AT5G41980.1 | 37.059 | 340 | 193 | 6 | 33 | 371 | 15 | 334 | 1.36e-70 | 226 |
| Msa0804800 | AT1G43722.1 | 36.102 | 313 | 184 | 6 | 4 | 308 | 16 | 320 | 9.98e-60 | 197 |
| Msa0804800 | AT5G28730.1 | 33.992 | 253 | 129 | 6 | 33 | 283 | 2 | 218 | 4.99e-40 | 144 |
| Msa0804800 | AT3G30525.1 | 36.686 | 169 | 101 | 2 | 172 | 335 | 1 | 168 | 7.24e-30 | 114 |
| Msa0804800 | AT5G35695.1 | 41.007 | 139 | 68 | 3 | 210 | 346 | 25 | 151 | 6.02e-28 | 110 |
| Msa0804800 | AT5G28950.1 | 44.318 | 88 | 49 | 0 | 154 | 241 | 11 | 98 | 2.18e-20 | 87.4 |
| Msa0804800 | AT4G10890.3 | 43.956 | 91 | 50 | 1 | 221 | 311 | 71 | 160 | 6.62e-16 | 79.7 |
| Msa0804800 | AT4G10890.1 | 43.956 | 91 | 50 | 1 | 221 | 311 | 71 | 160 | 6.62e-16 | 79.7 |
| Msa0804800 | AT4G10890.2 | 43.956 | 91 | 50 | 1 | 221 | 311 | 71 | 160 | 6.62e-16 | 79.7 |
Find 73 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 5_3:-20966736 | Msa0804800:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.196921 | 5_3:-20967118 | Msa0804800:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 5_3:-20966516 | Msa0804800:CDS |
| CCCTGGGAACGCCGAAAATC+AGG | 0.293895 | 5_3:+20966785 | None:intergenic |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 5_3:+20966506 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 5_3:-20967678 | None:intergenic |
| TTCTTTAGTGGCTGCATTGA+TGG | 0.324344 | 5_3:-20967614 | Msa0804800:CDS |
| TTCGTCCAATAAATCTAGTT+TGG | 0.330713 | 5_3:+20967113 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 5_3:+20966844 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 5_3:+20966653 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 5_3:-20967204 | Msa0804800:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 5_3:-20966713 | Msa0804800:CDS |
| TGATAACGTTCACATCTATA+TGG | 0.356346 | 5_3:+20966812 | None:intergenic |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 5_3:-20966591 | Msa0804800:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 5_3:-20966604 | Msa0804800:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 5_3:-20967556 | Msa0804800:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 5_3:+20967414 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 5_3:-20967445 | Msa0804800:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 5_3:-20966836 | Msa0804800:CDS |
| TGTACCATCGATTGCTCCTA+TGG | 0.423826 | 5_3:+20967165 | None:intergenic |
| GCAATGTTCTTACTTGTTGT+TGG | 0.423911 | 5_3:-20967382 | Msa0804800:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 5_3:+20966531 | None:intergenic |
| GCTGCATTGATGGGTGAGTA+TGG | 0.462334 | 5_3:-20967604 | Msa0804800:CDS |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 5_3:+20966953 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 5_3:-20967546 | Msa0804800:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 5_3:+20966836 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 5_3:-20967376 | Msa0804800:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 5_3:+20967258 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 5_3:-20966870 | Msa0804800:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 5_3:-20966863 | Msa0804800:CDS |
| ACTAGATTTATTGGACGAAA+GGG | 0.486947 | 5_3:-20967109 | Msa0804800:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 5_3:-20966567 | Msa0804800:CDS |
| TCTTTAGTGGCTGCATTGAT+GGG | 0.490802 | 5_3:-20967613 | Msa0804800:CDS |
| ATGTAATGGCTGTATGTGAT+TGG | 0.504425 | 5_3:-20967072 | Msa0804800:CDS |
| AACTAGATTTATTGGACGAA+AGG | 0.514080 | 5_3:-20967110 | Msa0804800:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 5_3:-20966845 | Msa0804800:CDS |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 5_3:-20967420 | Msa0804800:CDS |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 5_3:+20967415 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 5_3:-20966627 | Msa0804800:CDS |
| AACATCTCATAGCAACGAGT+TGG | 0.547390 | 5_3:+20967499 | None:intergenic |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 5_3:+20966984 | None:intergenic |
| AATAAATCTAGTTTGGTCAC+TGG | 0.549153 | 5_3:+20967120 | None:intergenic |
| GATGAATCATGTTCGAAACT+CGG | 0.549572 | 5_3:-20966456 | Msa0804800:CDS |
| CCTGGGAACGCCGAAAATCA+GGG | 0.552706 | 5_3:+20966786 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 5_3:-20966846 | Msa0804800:CDS |
| TCACATAGGGGTAGAAGAGA+TGG | 0.556124 | 5_3:-20967407 | Msa0804800:CDS |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 5_3:-20966574 | Msa0804800:CDS |
| TTGCTATGAGATGTTTCGAA+TGG | 0.565335 | 5_3:-20967491 | Msa0804800:CDS |
| TCACAGTTTCTCCTGAGTGT+TGG | 0.566113 | 5_3:+20967323 | None:intergenic |
| GTAATAGAATGATTCAAGAA+AGG | 0.570517 | 5_3:-20967348 | Msa0804800:CDS |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 5_3:-20967371 | Msa0804800:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 5_3:-20967370 | Msa0804800:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.575639 | 5_3:-20967334 | Msa0804800:CDS |
| ATATCCGACACAAAATGTAA+TGG | 0.578336 | 5_3:-20967086 | Msa0804800:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 5_3:-20967421 | Msa0804800:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 5_3:+20967559 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 5_3:+20966947 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 5_3:-20967526 | Msa0804800:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 5_3:-20967555 | Msa0804800:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 5_3:-20967545 | Msa0804800:CDS |
| GTCACTGGCACTAACCACAC+AGG | 0.619956 | 5_3:+20967135 | None:intergenic |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 5_3:+20966532 | None:intergenic |
| AACATGATTCATCTCAGATG+AGG | 0.624817 | 5_3:+20966466 | None:intergenic |
| GCATGACTATCACGGAACAA+AGG | 0.635948 | 5_3:+20967232 | None:intergenic |
| TCACGGAACAAAGGATCTTG+AGG | 0.641766 | 5_3:+20967241 | None:intergenic |
| TCACTGGCACTAACCACACA+GGG | 0.685550 | 5_3:+20967136 | None:intergenic |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 5_3:-20967525 | Msa0804800:CDS |
| AATGCCATAGGAGCAATCGA+TGG | 0.692262 | 5_3:-20967169 | Msa0804800:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 5_3:-20966844 | Msa0804800:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.708162 | 5_3:+20966830 | None:intergenic |
| TGGTACACATATTCCCTGTG+TGG | 0.723477 | 5_3:-20967149 | Msa0804800:CDS |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 5_3:-20967419 | Msa0804800:CDS |
| GGGGTTTGAAAATAACAACG+AGG | 0.822642 | 5_3:-20966765 | Msa0804800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr5_3:20967198-20967217 | Msa0804800:CDS | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr5_3:20967198-20967217 | Msa0804800:CDS | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr5_3:20967164-20967183 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr5_3:20967212-20967231 | Msa0804800:CDS | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr5_3:20967164-20967183 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr5_3:20967212-20967231 | Msa0804800:CDS | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr5_3:20967147-20967166 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr5_3:20967349-20967368 | Msa0804800:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr5_3:20967481-20967500 | Msa0804800:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr5_3:20967147-20967166 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr5_3:20967349-20967368 | Msa0804800:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr5_3:20967481-20967500 | Msa0804800:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr5_3:20966625-20966644 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr5_3:20966737-20966756 | Msa0804800:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr5_3:20967215-20967234 | Msa0804800:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr5_3:20967435-20967454 | None:intergenic | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr5_3:20966625-20966644 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr5_3:20966737-20966756 | Msa0804800:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr5_3:20967215-20967234 | Msa0804800:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr5_3:20967435-20967454 | None:intergenic | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr5_3:20966459-20966478 | Msa0804800:CDS | 30.0% |
| TGCACTAAATTAGTTGATCA+TGG | - | chr5_3:20966640-20966659 | Msa0804800:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr5_3:20966830-20966849 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | + | chr5_3:20966864-20966883 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr5_3:20966895-20966914 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | + | chr5_3:20966907-20966926 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | - | chr5_3:20966904-20966923 | Msa0804800:intron | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr5_3:20966968-20966987 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr5_3:20966967-20966986 | Msa0804800:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr5_3:20966975-20966994 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr5_3:20966975-20966994 | Msa0804800:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr5_3:20966976-20966995 | Msa0804800:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr5_3:20966999-20967018 | Msa0804800:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr5_3:20967141-20967160 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr5_3:20967144-20967163 | None:intergenic | 30.0% | |
| ! | TGATAACGTTCACATCTATA+TGG | + | chr5_3:20967276-20967295 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr5_3:20967372-20967391 | Msa0804800:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr5_3:20967379-20967398 | Msa0804800:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr5_3:20967494-20967513 | Msa0804800:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr5_3:20967556-20967575 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr5_3:20967557-20967576 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr5_3:20967569-20967588 | Msa0804800:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr5_3:20967582-20967601 | None:intergenic | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr5_3:20966459-20966478 | Msa0804800:CDS | 30.0% |
| TGCACTAAATTAGTTGATCA+TGG | - | chr5_3:20966640-20966659 | Msa0804800:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr5_3:20966830-20966849 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | + | chr5_3:20966864-20966883 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr5_3:20966895-20966914 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | + | chr5_3:20966907-20966926 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | - | chr5_3:20966904-20966923 | Msa0804800:intron | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr5_3:20966968-20966987 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr5_3:20966967-20966986 | Msa0804800:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr5_3:20966975-20966994 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr5_3:20966975-20966994 | Msa0804800:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr5_3:20966976-20966995 | Msa0804800:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr5_3:20966999-20967018 | Msa0804800:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr5_3:20967141-20967160 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr5_3:20967144-20967163 | None:intergenic | 30.0% | |
| ! | TGATAACGTTCACATCTATA+TGG | + | chr5_3:20967276-20967295 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr5_3:20967372-20967391 | Msa0804800:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr5_3:20967379-20967398 | Msa0804800:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr5_3:20967494-20967513 | Msa0804800:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr5_3:20967556-20967575 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr5_3:20967557-20967576 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr5_3:20967569-20967588 | Msa0804800:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr5_3:20967582-20967601 | None:intergenic | 30.0% | |
| TTGCTATGAGATGTTTCGAA+TGG | - | chr5_3:20966594-20966613 | Msa0804800:CDS | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr5_3:20966664-20966683 | Msa0804800:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr5_3:20966665-20966684 | Msa0804800:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr5_3:20966703-20966722 | Msa0804800:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr5_3:20966709-20966728 | Msa0804800:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr5_3:20966881-20966900 | Msa0804800:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr5_3:20967006-20967025 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr5_3:20967013-20967032 | Msa0804800:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr5_3:20967042-20967061 | Msa0804800:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr5_3:20967046-20967065 | Msa0804800:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr5_3:20967047-20967066 | Msa0804800:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr5_3:20967222-20967241 | Msa0804800:CDS | 35.0% |
| ! | GTTATCACATCCCTGATTTT+CGG | - | chr5_3:20967289-20967308 | Msa0804800:CDS | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | + | chr5_3:20967319-20967338 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr5_3:20967511-20967530 | Msa0804800:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr5_3:20967622-20967641 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr5_3:20967629-20967648 | Msa0804800:CDS | 35.0% | |
| TTGCTATGAGATGTTTCGAA+TGG | - | chr5_3:20966594-20966613 | Msa0804800:CDS | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr5_3:20966664-20966683 | Msa0804800:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr5_3:20966665-20966684 | Msa0804800:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr5_3:20966703-20966722 | Msa0804800:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr5_3:20966709-20966728 | Msa0804800:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr5_3:20966881-20966900 | Msa0804800:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr5_3:20967006-20967025 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr5_3:20967013-20967032 | Msa0804800:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr5_3:20967042-20967061 | Msa0804800:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr5_3:20967046-20967065 | Msa0804800:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr5_3:20967047-20967066 | Msa0804800:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr5_3:20967222-20967241 | Msa0804800:CDS | 35.0% |
| ! | GTTATCACATCCCTGATTTT+CGG | - | chr5_3:20967289-20967308 | Msa0804800:CDS | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | + | chr5_3:20967319-20967338 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr5_3:20967511-20967530 | Msa0804800:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr5_3:20967622-20967641 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr5_3:20967629-20967648 | Msa0804800:CDS | 35.0% | |
| TTCTTTAGTGGCTGCATTGA+TGG | - | chr5_3:20966471-20966490 | Msa0804800:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | - | chr5_3:20966472-20966491 | Msa0804800:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr5_3:20966529-20966548 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr5_3:20966529-20966548 | Msa0804800:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr5_3:20966530-20966549 | Msa0804800:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr5_3:20966559-20966578 | Msa0804800:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr5_3:20966560-20966579 | Msa0804800:CDS | 40.0% |
| AACATCTCATAGCAACGAGT+TGG | + | chr5_3:20966589-20966608 | None:intergenic | 40.0% | |
| AAAGCCCACTAATCACATAG+GGG | - | chr5_3:20966666-20966685 | Msa0804800:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr5_3:20966673-20966692 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr5_3:20966674-20966693 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr5_3:20967051-20967070 | Msa0804800:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr5_3:20967082-20967101 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr5_3:20967104-20967123 | None:intergenic | 40.0% | |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | + | chr5_3:20967320-20967339 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | - | chr5_3:20967320-20967339 | Msa0804800:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr5_3:20967458-20967477 | Msa0804800:CDS | 40.0% | |
| TTCTTTAGTGGCTGCATTGA+TGG | - | chr5_3:20966471-20966490 | Msa0804800:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | - | chr5_3:20966472-20966491 | Msa0804800:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr5_3:20966529-20966548 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr5_3:20966529-20966548 | Msa0804800:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr5_3:20966530-20966549 | Msa0804800:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr5_3:20966559-20966578 | Msa0804800:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr5_3:20966560-20966579 | Msa0804800:CDS | 40.0% |
| AACATCTCATAGCAACGAGT+TGG | + | chr5_3:20966589-20966608 | None:intergenic | 40.0% | |
| AAAGCCCACTAATCACATAG+GGG | - | chr5_3:20966666-20966685 | Msa0804800:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr5_3:20966673-20966692 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr5_3:20966674-20966693 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr5_3:20967051-20967070 | Msa0804800:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr5_3:20967082-20967101 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr5_3:20967104-20967123 | None:intergenic | 40.0% | |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | + | chr5_3:20967320-20967339 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | - | chr5_3:20967320-20967339 | Msa0804800:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr5_3:20967458-20967477 | Msa0804800:CDS | 40.0% | |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr5_3:20966678-20966697 | Msa0804800:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr5_3:20966714-20966733 | Msa0804800:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr5_3:20966715-20966734 | Msa0804800:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr5_3:20966751-20966770 | Msa0804800:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr5_3:20966765-20966784 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | + | chr5_3:20966847-20966866 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | + | chr5_3:20966856-20966875 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | - | chr5_3:20966916-20966935 | Msa0804800:intron | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | + | chr5_3:20966923-20966942 | None:intergenic | 45.0% |
| TGGTACACATATTCCCTGTG+TGG | - | chr5_3:20966936-20966955 | Msa0804800:intron | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr5_3:20967083-20967102 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr5_3:20967126-20967145 | Msa0804800:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr5_3:20967135-20967154 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr5_3:20967258-20967277 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr5_3:20967518-20967537 | Msa0804800:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr5_3:20966678-20966697 | Msa0804800:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr5_3:20966714-20966733 | Msa0804800:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr5_3:20966715-20966734 | Msa0804800:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr5_3:20966751-20966770 | Msa0804800:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr5_3:20966765-20966784 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | + | chr5_3:20966847-20966866 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | + | chr5_3:20966856-20966875 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | - | chr5_3:20966916-20966935 | Msa0804800:intron | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | + | chr5_3:20966923-20966942 | None:intergenic | 45.0% |
| TGGTACACATATTCCCTGTG+TGG | - | chr5_3:20966936-20966955 | Msa0804800:intron | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr5_3:20967083-20967102 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr5_3:20967126-20967145 | Msa0804800:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr5_3:20967135-20967154 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr5_3:20967258-20967277 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr5_3:20967518-20967537 | Msa0804800:CDS | 45.0% |
| ! | GCTGCATTGATGGGTGAGTA+TGG | - | chr5_3:20966481-20966500 | Msa0804800:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr5_3:20966540-20966559 | Msa0804800:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr5_3:20966952-20966971 | None:intergenic | 50.0% | |
| ! | GCTGCATTGATGGGTGAGTA+TGG | - | chr5_3:20966481-20966500 | Msa0804800:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr5_3:20966540-20966559 | Msa0804800:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr5_3:20966952-20966971 | None:intergenic | 50.0% | |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr5_3:20966539-20966558 | Msa0804800:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr5_3:20966953-20966972 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr5_3:20967239-20967258 | Msa0804800:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr5_3:20967240-20967259 | Msa0804800:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr5_3:20967244-20967263 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr5_3:20967241-20967260 | Msa0804800:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr5_3:20967252-20967271 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr5_3:20967249-20967268 | Msa0804800:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | + | chr5_3:20967302-20967321 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | - | chr5_3:20967300-20967319 | Msa0804800:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | - | chr5_3:20967301-20967320 | Msa0804800:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr5_3:20966539-20966558 | Msa0804800:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr5_3:20966953-20966972 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr5_3:20967239-20967258 | Msa0804800:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr5_3:20967240-20967259 | Msa0804800:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr5_3:20967244-20967263 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr5_3:20967241-20967260 | Msa0804800:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr5_3:20967252-20967271 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr5_3:20967249-20967268 | Msa0804800:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | + | chr5_3:20967302-20967321 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | - | chr5_3:20967300-20967319 | Msa0804800:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | - | chr5_3:20967301-20967320 | Msa0804800:CDS | 55.0% |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | - | chr5_3:20967299-20967318 | Msa0804800:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | + | chr5_3:20967303-20967322 | None:intergenic | 60.0% | |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | - | chr5_3:20967299-20967318 | Msa0804800:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | + | chr5_3:20967303-20967322 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 20966418 | 20967689 | 20966418 | ID=Msa0804800;Name=Msa0804800 |
| chr5_3 | mRNA | 20966418 | 20967689 | 20966418 | ID=Msa0804800-mRNA-1;Parent=Msa0804800;Name=Msa0804800-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0|1|1|1|2|0|399 |
| chr5_3 | exon | 20966960 | 20967689 | 20966960 | ID=Msa0804800-mRNA-1:exon:8414;Parent=Msa0804800-mRNA-1 |
| chr5_3 | exon | 20966418 | 20966887 | 20966418 | ID=Msa0804800-mRNA-1:exon:8413;Parent=Msa0804800-mRNA-1 |
| chr5_3 | CDS | 20966960 | 20967689 | 20966960 | ID=Msa0804800-mRNA-1:cds;Parent=Msa0804800-mRNA-1 |
| chr5_3 | CDS | 20966418 | 20966887 | 20966418 | ID=Msa0804800-mRNA-1:cds;Parent=Msa0804800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
