Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514310 | XP_024631836.2 | 96.992 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514310 | A0A396JPB9 | 76.049 | 405 | 90 | 1 | 1 | 398 | 1 | 405 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031420 | Msa0514310 | 0.899650 | 1.606313e-77 | -8.615850e-47 |
| Msa0514310 | Msa0602990 | 0.867447 | 1.359947e-65 | -8.615850e-47 |
| Msa0514310 | Msa0724310 | 0.976988 | 6.864660e-143 | -8.615850e-47 |
| Msa0514310 | Msa0804800 | 0.828837 | 7.198195e-55 | -8.615850e-47 |
| Msa0514310 | Msa1115870 | 0.803242 | 3.827390e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514310 | MtrunA17_Chr1g0172731 | 76.049 | 405 | 90 | 1 | 1 | 398 | 1 | 405 | 0.0 | 664 |
| Msa0514310 | MtrunA17_Chr1g0190171 | 75.309 | 405 | 93 | 1 | 1 | 398 | 1 | 405 | 0.0 | 660 |
| Msa0514310 | MtrunA17_Chr2g0321401 | 75.000 | 252 | 57 | 1 | 1 | 246 | 1 | 252 | 3.61e-143 | 407 |
| Msa0514310 | MtrunA17_Chr8g0334561 | 73.913 | 253 | 59 | 1 | 1 | 246 | 1 | 253 | 1.41e-141 | 404 |
| Msa0514310 | MtrunA17_Chr2g0285471 | 80.435 | 184 | 36 | 0 | 63 | 246 | 1 | 184 | 3.83e-110 | 321 |
| Msa0514310 | MtrunA17_Chr1g0182341 | 42.697 | 356 | 160 | 6 | 3 | 350 | 15 | 334 | 8.20e-91 | 278 |
| Msa0514310 | MtrunA17_Chr6g0478531 | 40.517 | 348 | 197 | 6 | 35 | 380 | 15 | 354 | 1.28e-83 | 260 |
| Msa0514310 | MtrunA17_Chr6g0477141 | 42.025 | 326 | 184 | 3 | 15 | 338 | 96 | 418 | 1.40e-83 | 263 |
| Msa0514310 | MtrunA17_Chr7g0226311 | 42.857 | 322 | 173 | 6 | 59 | 377 | 9 | 322 | 1.27e-74 | 235 |
| Msa0514310 | MtrunA17_Chr8g0391981 | 37.808 | 365 | 205 | 7 | 18 | 378 | 36 | 382 | 7.93e-71 | 228 |
| Msa0514310 | MtrunA17_Chr1g0207391 | 39.610 | 308 | 165 | 7 | 45 | 343 | 74 | 369 | 2.50e-67 | 219 |
| Msa0514310 | MtrunA17_Chr7g0267201 | 48.125 | 160 | 75 | 2 | 66 | 217 | 1 | 160 | 3.35e-47 | 159 |
| Msa0514310 | MtrunA17_Chr3g0140031 | 66.071 | 112 | 31 | 1 | 1 | 105 | 1 | 112 | 4.27e-46 | 154 |
| Msa0514310 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 342 | 399 | 1 | 58 | 3.63e-28 | 105 |
| Msa0514310 | MtrunA17_Chr1g0211031 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.57e-27 | 103 |
| Msa0514310 | MtrunA17_Chr8g0370251 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.57e-27 | 103 |
| Msa0514310 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 2.65e-26 | 100 |
| Msa0514310 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 3.03e-26 | 100 |
| Msa0514310 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 1.78e-19 | 84.3 |
| Msa0514310 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 246 | 364 | 10 | 126 | 1.67e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514310 | AT5G41980.1 | 37.059 | 340 | 193 | 6 | 33 | 371 | 15 | 334 | 1.58e-70 | 226 |
| Msa0514310 | AT1G43722.1 | 36.102 | 313 | 184 | 6 | 4 | 308 | 16 | 320 | 8.78e-60 | 197 |
| Msa0514310 | AT5G28730.1 | 33.992 | 253 | 129 | 6 | 33 | 283 | 2 | 218 | 5.90e-40 | 144 |
| Msa0514310 | AT3G30525.1 | 36.686 | 169 | 101 | 2 | 172 | 335 | 1 | 168 | 5.36e-30 | 114 |
| Msa0514310 | AT5G35695.1 | 41.727 | 139 | 67 | 3 | 210 | 346 | 25 | 151 | 2.82e-28 | 110 |
| Msa0514310 | AT5G28950.1 | 44.318 | 88 | 49 | 0 | 154 | 241 | 11 | 98 | 2.25e-20 | 87.4 |
| Msa0514310 | AT4G10890.3 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.30e-16 | 80.9 |
| Msa0514310 | AT4G10890.1 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.30e-16 | 80.9 |
| Msa0514310 | AT4G10890.2 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.30e-16 | 80.9 |
Find 73 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 3_4:-65004024 | Msa0514310:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.196921 | 3_4:-65004406 | Msa0514310:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 3_4:-65003804 | Msa0514310:CDS |
| CCCTGGGAACGCCGAAAATC+AGG | 0.297546 | 3_4:+65004073 | None:intergenic |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 3_4:+65003794 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 3_4:-65004966 | None:intergenic |
| TTCTTTAGTGGCTGCATTGA+TGG | 0.324344 | 3_4:-65004902 | Msa0514310:CDS |
| TTCGTCCAATAAATCTAGTT+TGG | 0.330713 | 3_4:+65004401 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 3_4:+65004132 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 3_4:+65003941 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 3_4:-65004492 | Msa0514310:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 3_4:-65004001 | Msa0514310:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 3_4:-65003879 | Msa0514310:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 3_4:-65003892 | Msa0514310:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 3_4:-65004844 | Msa0514310:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 3_4:+65004702 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 3_4:-65004733 | Msa0514310:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 3_4:-65004124 | Msa0514310:CDS |
| TGTACCATCGATTGCTCCTA+TGG | 0.423826 | 3_4:+65004453 | None:intergenic |
| GCAATGTTCTTACTTGTTGT+TGG | 0.423911 | 3_4:-65004670 | Msa0514310:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 3_4:+65003819 | None:intergenic |
| GCTGCATTGATGGGTGAGTA+TGG | 0.462334 | 3_4:-65004892 | Msa0514310:CDS |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 3_4:+65004241 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 3_4:-65004834 | Msa0514310:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 3_4:+65004124 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 3_4:-65004664 | Msa0514310:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 3_4:+65004546 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 3_4:-65004158 | Msa0514310:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 3_4:-65004151 | Msa0514310:CDS |
| ACTAGATTTATTGGACGAAA+GGG | 0.486947 | 3_4:-65004397 | Msa0514310:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 3_4:-65003855 | Msa0514310:CDS |
| TCTTTAGTGGCTGCATTGAT+GGG | 0.490802 | 3_4:-65004901 | Msa0514310:CDS |
| GATGAATCACGTTCGAAACT+CGG | 0.500586 | 3_4:-65003744 | Msa0514310:CDS |
| ATGTAATGGCTGTATGTGAT+TGG | 0.504425 | 3_4:-65004360 | Msa0514310:CDS |
| AACTAGATTTATTGGACGAA+AGG | 0.514080 | 3_4:-65004398 | Msa0514310:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 3_4:-65004133 | Msa0514310:CDS |
| TTGTTATGAGATGTTTCGAA+TGG | 0.520234 | 3_4:-65004779 | Msa0514310:CDS |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 3_4:+65004100 | None:intergenic |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 3_4:-65004708 | Msa0514310:CDS |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 3_4:+65004703 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 3_4:-65003915 | Msa0514310:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 3_4:+65004272 | None:intergenic |
| AATAAATCTAGTTTGGTCAC+TGG | 0.549153 | 3_4:+65004408 | None:intergenic |
| AACATCTCATAACAACGAGT+TGG | 0.551166 | 3_4:+65004787 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 3_4:-65004134 | Msa0514310:CDS |
| TCACATAGGGGTAGAAGAGA+TGG | 0.556124 | 3_4:-65004695 | Msa0514310:CDS |
| CCTGGGAACGCCGAAAATCA+GGG | 0.556357 | 3_4:+65004074 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 3_4:-65003862 | Msa0514310:CDS |
| TCACAGTTTCTCCTGAGTGT+TGG | 0.566113 | 3_4:+65004611 | None:intergenic |
| GTAATAGAATGATTCAAGAA+AGG | 0.570517 | 3_4:-65004636 | Msa0514310:CDS |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 3_4:-65004659 | Msa0514310:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 3_4:-65004658 | Msa0514310:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.575639 | 3_4:-65004622 | Msa0514310:CDS |
| ATATCCGACACAAAATGTAA+TGG | 0.578336 | 3_4:-65004374 | Msa0514310:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 3_4:-65004709 | Msa0514310:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 3_4:+65004847 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 3_4:+65004235 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 3_4:-65004814 | Msa0514310:CDS |
| TGGTACACATATTCCTTGTG+TGG | 0.615164 | 3_4:-65004437 | Msa0514310:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 3_4:-65004843 | Msa0514310:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 3_4:-65004833 | Msa0514310:CDS |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 3_4:+65003820 | None:intergenic |
| GCATGACTATCACGGAACAA+AGG | 0.635948 | 3_4:+65004520 | None:intergenic |
| TCACGGAACAAAGGATCTTG+AGG | 0.641766 | 3_4:+65004529 | None:intergenic |
| AACGTGATTCATCTCAGATG+AGG | 0.643146 | 3_4:+65003754 | None:intergenic |
| TCACTGGCACTAACCACACA+AGG | 0.675472 | 3_4:+65004424 | None:intergenic |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 3_4:-65004813 | Msa0514310:CDS |
| AATGCCATAGGAGCAATCGA+TGG | 0.692262 | 3_4:-65004457 | Msa0514310:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 3_4:-65004132 | Msa0514310:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 3_4:+65004118 | None:intergenic |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 3_4:-65004707 | Msa0514310:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 3_4:+65004077 | None:intergenic |
| GGGGTTTGAAAATAACAACG+AGG | 0.822642 | 3_4:-65004053 | Msa0514310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr3_4:65004486-65004505 | Msa0514310:CDS | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr3_4:65004486-65004505 | Msa0514310:CDS | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr3_4:65004452-65004471 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr3_4:65004500-65004519 | Msa0514310:CDS | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr3_4:65004452-65004471 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr3_4:65004500-65004519 | Msa0514310:CDS | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr3_4:65004435-65004454 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr3_4:65004637-65004656 | Msa0514310:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr3_4:65004769-65004788 | Msa0514310:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr3_4:65004435-65004454 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr3_4:65004637-65004656 | Msa0514310:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr3_4:65004769-65004788 | Msa0514310:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr3_4:65003913-65003932 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr3_4:65004025-65004044 | Msa0514310:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr3_4:65004503-65004522 | Msa0514310:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr3_4:65004723-65004742 | None:intergenic | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr3_4:65003913-65003932 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr3_4:65004025-65004044 | Msa0514310:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr3_4:65004503-65004522 | Msa0514310:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr3_4:65004723-65004742 | None:intergenic | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr3_4:65003747-65003766 | Msa0514310:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr3_4:65003882-65003901 | Msa0514310:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr3_4:65003928-65003947 | Msa0514310:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr3_4:65004118-65004137 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | + | chr3_4:65004152-65004171 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr3_4:65004183-65004202 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | + | chr3_4:65004195-65004214 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | - | chr3_4:65004192-65004211 | Msa0514310:intron | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr3_4:65004256-65004275 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr3_4:65004255-65004274 | Msa0514310:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr3_4:65004263-65004282 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr3_4:65004263-65004282 | Msa0514310:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr3_4:65004264-65004283 | Msa0514310:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr3_4:65004287-65004306 | Msa0514310:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr3_4:65004429-65004448 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr3_4:65004432-65004451 | None:intergenic | 30.0% | |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr3_4:65004660-65004679 | Msa0514310:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr3_4:65004667-65004686 | Msa0514310:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr3_4:65004782-65004801 | Msa0514310:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr3_4:65004844-65004863 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr3_4:65004845-65004864 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr3_4:65004857-65004876 | Msa0514310:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr3_4:65004870-65004889 | None:intergenic | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr3_4:65003747-65003766 | Msa0514310:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr3_4:65003882-65003901 | Msa0514310:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr3_4:65003928-65003947 | Msa0514310:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr3_4:65004118-65004137 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | + | chr3_4:65004152-65004171 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr3_4:65004183-65004202 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | + | chr3_4:65004195-65004214 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | - | chr3_4:65004192-65004211 | Msa0514310:intron | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr3_4:65004256-65004275 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr3_4:65004255-65004274 | Msa0514310:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr3_4:65004263-65004282 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr3_4:65004263-65004282 | Msa0514310:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr3_4:65004264-65004283 | Msa0514310:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr3_4:65004287-65004306 | Msa0514310:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr3_4:65004429-65004448 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr3_4:65004432-65004451 | None:intergenic | 30.0% | |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr3_4:65004660-65004679 | Msa0514310:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr3_4:65004667-65004686 | Msa0514310:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr3_4:65004782-65004801 | Msa0514310:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr3_4:65004844-65004863 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr3_4:65004845-65004864 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr3_4:65004857-65004876 | Msa0514310:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr3_4:65004870-65004889 | None:intergenic | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr3_4:65003877-65003896 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr3_4:65003952-65003971 | Msa0514310:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr3_4:65003953-65003972 | Msa0514310:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr3_4:65003991-65004010 | Msa0514310:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr3_4:65003997-65004016 | Msa0514310:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr3_4:65004169-65004188 | Msa0514310:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr3_4:65004294-65004313 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr3_4:65004301-65004320 | Msa0514310:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr3_4:65004330-65004349 | Msa0514310:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr3_4:65004334-65004353 | Msa0514310:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr3_4:65004335-65004354 | Msa0514310:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr3_4:65004510-65004529 | Msa0514310:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr3_4:65004564-65004583 | None:intergenic | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | + | chr3_4:65004607-65004626 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr3_4:65004799-65004818 | Msa0514310:CDS | 35.0% |
| AACATCTCATAACAACGAGT+TGG | + | chr3_4:65003877-65003896 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr3_4:65003952-65003971 | Msa0514310:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr3_4:65003953-65003972 | Msa0514310:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr3_4:65003991-65004010 | Msa0514310:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr3_4:65003997-65004016 | Msa0514310:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr3_4:65004169-65004188 | Msa0514310:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr3_4:65004294-65004313 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr3_4:65004301-65004320 | Msa0514310:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr3_4:65004330-65004349 | Msa0514310:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr3_4:65004334-65004353 | Msa0514310:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr3_4:65004335-65004354 | Msa0514310:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr3_4:65004510-65004529 | Msa0514310:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr3_4:65004564-65004583 | None:intergenic | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | + | chr3_4:65004607-65004626 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr3_4:65004799-65004818 | Msa0514310:CDS | 35.0% |
| TTCTTTAGTGGCTGCATTGA+TGG | - | chr3_4:65003759-65003778 | Msa0514310:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | - | chr3_4:65003760-65003779 | Msa0514310:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr3_4:65003817-65003836 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr3_4:65003817-65003836 | Msa0514310:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr3_4:65003818-65003837 | Msa0514310:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr3_4:65003847-65003866 | Msa0514310:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr3_4:65003848-65003867 | Msa0514310:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr3_4:65003954-65003973 | Msa0514310:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr3_4:65003961-65003980 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr3_4:65003962-65003981 | None:intergenic | 40.0% | |
| TGGTACACATATTCCTTGTG+TGG | - | chr3_4:65004224-65004243 | Msa0514310:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr3_4:65004339-65004358 | Msa0514310:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr3_4:65004370-65004389 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr3_4:65004392-65004411 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr3_4:65004577-65004596 | Msa0514310:CDS | 40.0% |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | + | chr3_4:65004608-65004627 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | - | chr3_4:65004608-65004627 | Msa0514310:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr3_4:65004746-65004765 | Msa0514310:CDS | 40.0% | |
| AACGTGATTCATCTCAGATG+AGG | + | chr3_4:65004910-65004929 | None:intergenic | 40.0% | |
| GATGAATCACGTTCGAAACT+CGG | - | chr3_4:65004917-65004936 | Msa0514310:CDS | 40.0% | |
| TTCTTTAGTGGCTGCATTGA+TGG | - | chr3_4:65003759-65003778 | Msa0514310:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | - | chr3_4:65003760-65003779 | Msa0514310:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr3_4:65003817-65003836 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr3_4:65003817-65003836 | Msa0514310:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr3_4:65003818-65003837 | Msa0514310:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr3_4:65003847-65003866 | Msa0514310:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr3_4:65003848-65003867 | Msa0514310:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr3_4:65003954-65003973 | Msa0514310:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr3_4:65003961-65003980 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr3_4:65003962-65003981 | None:intergenic | 40.0% | |
| TGGTACACATATTCCTTGTG+TGG | - | chr3_4:65004224-65004243 | Msa0514310:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr3_4:65004339-65004358 | Msa0514310:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr3_4:65004370-65004389 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr3_4:65004392-65004411 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr3_4:65004577-65004596 | Msa0514310:CDS | 40.0% |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | + | chr3_4:65004608-65004627 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | - | chr3_4:65004608-65004627 | Msa0514310:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr3_4:65004746-65004765 | Msa0514310:CDS | 40.0% | |
| AACGTGATTCATCTCAGATG+AGG | + | chr3_4:65004910-65004929 | None:intergenic | 40.0% | |
| GATGAATCACGTTCGAAACT+CGG | - | chr3_4:65004917-65004936 | Msa0514310:CDS | 40.0% | |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr3_4:65003966-65003985 | Msa0514310:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr3_4:65004002-65004021 | Msa0514310:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr3_4:65004003-65004022 | Msa0514310:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr3_4:65004039-65004058 | Msa0514310:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr3_4:65004053-65004072 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | + | chr3_4:65004135-65004154 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | + | chr3_4:65004144-65004163 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | - | chr3_4:65004204-65004223 | Msa0514310:intron | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | + | chr3_4:65004211-65004230 | None:intergenic | 45.0% |
| GGTCAAAAACACGAGCATCA+TGG | + | chr3_4:65004371-65004390 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr3_4:65004414-65004433 | Msa0514310:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr3_4:65004423-65004442 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr3_4:65004546-65004565 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr3_4:65004806-65004825 | Msa0514310:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr3_4:65003966-65003985 | Msa0514310:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr3_4:65004002-65004021 | Msa0514310:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr3_4:65004003-65004022 | Msa0514310:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr3_4:65004039-65004058 | Msa0514310:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr3_4:65004053-65004072 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | + | chr3_4:65004135-65004154 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | + | chr3_4:65004144-65004163 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | - | chr3_4:65004204-65004223 | Msa0514310:intron | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | + | chr3_4:65004211-65004230 | None:intergenic | 45.0% |
| GGTCAAAAACACGAGCATCA+TGG | + | chr3_4:65004371-65004390 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr3_4:65004414-65004433 | Msa0514310:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr3_4:65004423-65004442 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr3_4:65004546-65004565 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr3_4:65004806-65004825 | Msa0514310:CDS | 45.0% |
| ! | GCTGCATTGATGGGTGAGTA+TGG | - | chr3_4:65003769-65003788 | Msa0514310:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr3_4:65003828-65003847 | Msa0514310:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+AGG | + | chr3_4:65004240-65004259 | None:intergenic | 50.0% | |
| ! | GCTGCATTGATGGGTGAGTA+TGG | - | chr3_4:65003769-65003788 | Msa0514310:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr3_4:65003828-65003847 | Msa0514310:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+AGG | + | chr3_4:65004240-65004259 | None:intergenic | 50.0% | |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr3_4:65003827-65003846 | Msa0514310:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr3_4:65004527-65004546 | Msa0514310:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr3_4:65004528-65004547 | Msa0514310:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr3_4:65004532-65004551 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr3_4:65004529-65004548 | Msa0514310:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr3_4:65004540-65004559 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr3_4:65004537-65004556 | Msa0514310:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | + | chr3_4:65004590-65004609 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | - | chr3_4:65004588-65004607 | Msa0514310:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | - | chr3_4:65004589-65004608 | Msa0514310:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr3_4:65003827-65003846 | Msa0514310:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr3_4:65004527-65004546 | Msa0514310:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr3_4:65004528-65004547 | Msa0514310:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr3_4:65004532-65004551 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr3_4:65004529-65004548 | Msa0514310:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr3_4:65004540-65004559 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr3_4:65004537-65004556 | Msa0514310:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | + | chr3_4:65004590-65004609 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | - | chr3_4:65004588-65004607 | Msa0514310:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | - | chr3_4:65004589-65004608 | Msa0514310:CDS | 55.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr3_4:65004587-65004606 | None:intergenic | 60.0% | |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | - | chr3_4:65004587-65004606 | Msa0514310:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | + | chr3_4:65004591-65004610 | None:intergenic | 60.0% | |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr3_4:65004587-65004606 | None:intergenic | 60.0% | |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | - | chr3_4:65004587-65004606 | Msa0514310:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | + | chr3_4:65004591-65004610 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65003706 | 65004977 | 65003706 | ID=Msa0514310;Name=Msa0514310 |
| chr3_4 | mRNA | 65003706 | 65004977 | 65003706 | ID=Msa0514310-mRNA-1;Parent=Msa0514310;Name=Msa0514310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0|1|1|1|2|0|399 |
| chr3_4 | exon | 65004248 | 65004977 | 65004248 | ID=Msa0514310-mRNA-1:exon:16493;Parent=Msa0514310-mRNA-1 |
| chr3_4 | exon | 65003706 | 65004175 | 65003706 | ID=Msa0514310-mRNA-1:exon:16492;Parent=Msa0514310-mRNA-1 |
| chr3_4 | CDS | 65004248 | 65004977 | 65004248 | ID=Msa0514310-mRNA-1:cds;Parent=Msa0514310-mRNA-1 |
| chr3_4 | CDS | 65003706 | 65004175 | 65003706 | ID=Msa0514310-mRNA-1:cds;Parent=Msa0514310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
