Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115870 | XP_024631836.2 | 86.466 | 399 | 13 | 1 | 1 | 358 | 1 | 399 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115870 | A0A396JPB9 | 66.667 | 405 | 87 | 2 | 1 | 357 | 1 | 405 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031420 | Msa1115870 | 0.808153 | 3.562907e-50 | -8.615850e-47 |
| Msa0645300 | Msa1115870 | 0.813945 | 1.979057e-51 | -8.615850e-47 |
| Msa0724310 | Msa1115870 | 0.800614 | 1.327042e-48 | -8.615850e-47 |
| Msa0767730 | Msa1115870 | 0.801579 | 8.425339e-49 | -8.615850e-47 |
| Msa0804800 | Msa1115870 | 0.842378 | 2.681970e-58 | -8.615850e-47 |
| Msa0135660 | Msa1115870 | 0.800739 | 1.251448e-48 | -8.615850e-47 |
| Msa0198910 | Msa1115870 | 0.814525 | 1.473711e-51 | -8.615850e-47 |
| Msa0251640 | Msa1115870 | 0.820248 | 7.581960e-53 | -8.615850e-47 |
| Msa0490140 | Msa1115870 | 0.834559 | 2.794318e-56 | -8.615850e-47 |
| Msa0514310 | Msa1115870 | 0.803242 | 3.827390e-49 | -8.615850e-47 |
| Msa0514320 | Msa1115870 | 0.839410 | 1.611216e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115870 | MtrunA17_Chr1g0172731 | 66.667 | 405 | 87 | 2 | 1 | 357 | 1 | 405 | 0.0 | 558 |
| Msa1115870 | MtrunA17_Chr1g0190171 | 65.926 | 405 | 90 | 2 | 1 | 357 | 1 | 405 | 0.0 | 555 |
| Msa1115870 | MtrunA17_Chr8g0334561 | 60.079 | 253 | 53 | 2 | 1 | 205 | 1 | 253 | 4.85e-103 | 304 |
| Msa1115870 | MtrunA17_Chr2g0321401 | 59.921 | 252 | 54 | 2 | 1 | 205 | 1 | 252 | 2.13e-102 | 302 |
| Msa1115870 | MtrunA17_Chr1g0182341 | 43.373 | 332 | 151 | 6 | 3 | 309 | 15 | 334 | 2.52e-85 | 263 |
| Msa1115870 | MtrunA17_Chr2g0285471 | 59.783 | 184 | 33 | 1 | 63 | 205 | 1 | 184 | 2.35e-69 | 216 |
| Msa1115870 | MtrunA17_Chr6g0478531 | 36.207 | 348 | 171 | 7 | 35 | 339 | 15 | 354 | 2.43e-62 | 204 |
| Msa1115870 | MtrunA17_Chr6g0477141 | 36.196 | 326 | 162 | 4 | 15 | 297 | 96 | 418 | 1.05e-59 | 199 |
| Msa1115870 | MtrunA17_Chr8g0391981 | 32.877 | 365 | 182 | 8 | 18 | 337 | 36 | 382 | 1.37e-49 | 171 |
| Msa1115870 | MtrunA17_Chr7g0226311 | 35.404 | 322 | 156 | 7 | 59 | 336 | 9 | 322 | 3.48e-48 | 166 |
| Msa1115870 | MtrunA17_Chr3g0140031 | 65.179 | 112 | 32 | 1 | 1 | 105 | 1 | 112 | 5.05e-46 | 153 |
| Msa1115870 | MtrunA17_Chr1g0207391 | 33.442 | 308 | 143 | 8 | 45 | 302 | 74 | 369 | 3.55e-44 | 157 |
| Msa1115870 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 301 | 358 | 1 | 58 | 2.93e-28 | 104 |
| Msa1115870 | MtrunA17_Chr1g0211031 | 60.465 | 86 | 32 | 1 | 273 | 358 | 1 | 84 | 2.90e-27 | 102 |
| Msa1115870 | MtrunA17_Chr8g0370251 | 60.465 | 86 | 32 | 1 | 273 | 358 | 1 | 84 | 2.90e-27 | 102 |
| Msa1115870 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 273 | 357 | 1 | 83 | 2.01e-26 | 100 |
| Msa1115870 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 273 | 357 | 1 | 83 | 2.25e-26 | 100 |
| Msa1115870 | MtrunA17_Chr7g0267201 | 42.735 | 117 | 59 | 2 | 66 | 174 | 1 | 117 | 1.07e-23 | 96.3 |
| Msa1115870 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 3.36e-19 | 83.2 |
| Msa1115870 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 205 | 323 | 10 | 126 | 1.20e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115870 | AT5G41980.1 | 33.832 | 334 | 171 | 8 | 33 | 330 | 15 | 334 | 1.68e-51 | 176 |
| Msa1115870 | AT1G43722.1 | 31.310 | 313 | 158 | 7 | 4 | 267 | 16 | 320 | 5.77e-41 | 146 |
| Msa1115870 | AT5G28730.1 | 33.624 | 229 | 121 | 6 | 33 | 242 | 2 | 218 | 3.20e-32 | 122 |
| Msa1115870 | AT5G35695.1 | 40.299 | 134 | 66 | 3 | 174 | 305 | 30 | 151 | 4.27e-25 | 101 |
| Msa1115870 | AT4G10890.3 | 33.684 | 190 | 91 | 2 | 81 | 270 | 6 | 160 | 9.10e-23 | 99.8 |
| Msa1115870 | AT4G10890.1 | 33.684 | 190 | 91 | 2 | 81 | 270 | 6 | 160 | 9.10e-23 | 99.8 |
| Msa1115870 | AT4G10890.2 | 33.684 | 190 | 91 | 2 | 81 | 270 | 6 | 160 | 9.10e-23 | 99.8 |
| Msa1115870 | AT3G30525.1 | 40.870 | 115 | 62 | 2 | 175 | 284 | 45 | 158 | 7.32e-20 | 85.9 |
Find 64 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 7_3:-63397869 | Msa1115870:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 7_3:-63397649 | Msa1115870:CDS |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 7_3:+63397639 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 7_3:-63398811 | None:intergenic |
| CCTTGGGAACGCCGAAAATC+AGG | 0.316313 | 7_3:+63397918 | None:intergenic |
| TTCTTTAGTGGCTGCATTGA+TGG | 0.324344 | 7_3:-63398747 | Msa1115870:CDS |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 7_3:+63397977 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 7_3:+63397786 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 7_3:-63398337 | Msa1115870:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 7_3:-63397846 | Msa1115870:CDS |
| GCAATGTTCTTACTTGTGTT+TGG | 0.366646 | 7_3:-63398515 | Msa1115870:CDS |
| CGTACCATCGATTGCTCCTA+TGG | 0.385688 | 7_3:+63398298 | None:intergenic |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 7_3:-63397724 | Msa1115870:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 7_3:-63397737 | Msa1115870:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 7_3:-63398689 | Msa1115870:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 7_3:+63398547 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 7_3:-63398578 | Msa1115870:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 7_3:-63397969 | Msa1115870:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 7_3:+63397664 | None:intergenic |
| GCTGCATTGATGGGTGAGTA+TGG | 0.462334 | 7_3:-63398737 | Msa1115870:CDS |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 7_3:+63398086 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 7_3:-63398679 | Msa1115870:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 7_3:+63397969 | None:intergenic |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 7_3:+63398391 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 7_3:-63398003 | Msa1115870:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 7_3:-63397996 | Msa1115870:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 7_3:-63397700 | Msa1115870:CDS |
| TCTTTAGTGGCTGCATTGAT+GGG | 0.490802 | 7_3:-63398746 | Msa1115870:CDS |
| TTCTTACTTGTGTTTGGACA+TGG | 0.517611 | 7_3:-63398509 | Msa1115870:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 7_3:-63397978 | Msa1115870:CDS |
| TTGTTATGAGATGTTTCGAA+TGG | 0.520234 | 7_3:-63398624 | Msa1115870:CDS |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 7_3:+63397945 | None:intergenic |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 7_3:-63398553 | Msa1115870:CDS |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 7_3:+63398548 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 7_3:-63397760 | Msa1115870:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 7_3:+63398117 | None:intergenic |
| GATGAATCATGTTCGAAACT+CGG | 0.549572 | 7_3:-63397589 | Msa1115870:CDS |
| AACATCTCATAACAACGAGT+TGG | 0.551166 | 7_3:+63398632 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 7_3:-63397979 | Msa1115870:CDS |
| TCACATAGGGGTAGAAGAGA+TGG | 0.556124 | 7_3:-63398540 | Msa1115870:CDS |
| CTTGGGAACGCCGAAAATCA+GGG | 0.556357 | 7_3:+63397919 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 7_3:-63397707 | Msa1115870:CDS |
| TCACAGTTTCTCCTGAGTGT+TGG | 0.566113 | 7_3:+63398456 | None:intergenic |
| GTAATAGAATGATTCAAGAA+AGG | 0.570517 | 7_3:-63398481 | Msa1115870:CDS |
| ACTTGTGTTTGGACATGGAG+TGG | 0.572106 | 7_3:-63398504 | Msa1115870:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.575639 | 7_3:-63398467 | Msa1115870:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 7_3:-63398554 | Msa1115870:CDS |
| CTTGTGTTTGGACATGGAGT+GGG | 0.588147 | 7_3:-63398503 | Msa1115870:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 7_3:+63398692 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 7_3:+63398080 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 7_3:-63398659 | Msa1115870:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 7_3:-63398688 | Msa1115870:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 7_3:-63398678 | Msa1115870:CDS |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 7_3:+63397665 | None:intergenic |
| AACATGATTCATCTCAGATG+AGG | 0.624817 | 7_3:+63397599 | None:intergenic |
| GCATGACTATCACGGAACAA+AGG | 0.635948 | 7_3:+63398365 | None:intergenic |
| TCACGGAACAAAGGATCTTG+AGG | 0.641766 | 7_3:+63398374 | None:intergenic |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 7_3:-63398658 | Msa1115870:CDS |
| AATGCCATAGGAGCAATCGA+TGG | 0.692262 | 7_3:-63398302 | Msa1115870:intron |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 7_3:-63397977 | Msa1115870:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 7_3:+63397963 | None:intergenic |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 7_3:-63398552 | Msa1115870:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 7_3:+63397922 | None:intergenic |
| AGGGTTTGAAAATAACAACG+AGG | 0.811296 | 7_3:-63397898 | Msa1115870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr7_3:63398331-63398350 | Msa1115870:CDS | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr7_3:63398331-63398350 | Msa1115870:CDS | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr7_3:63398297-63398316 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr7_3:63398345-63398364 | Msa1115870:CDS | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr7_3:63398297-63398316 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr7_3:63398345-63398364 | Msa1115870:CDS | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr7_3:63398280-63398299 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr7_3:63398482-63398501 | Msa1115870:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr7_3:63398614-63398633 | Msa1115870:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr7_3:63398280-63398299 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr7_3:63398482-63398501 | Msa1115870:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr7_3:63398614-63398633 | Msa1115870:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr7_3:63397758-63397777 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr7_3:63397870-63397889 | Msa1115870:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr7_3:63398348-63398367 | Msa1115870:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr7_3:63398568-63398587 | None:intergenic | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr7_3:63397758-63397777 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr7_3:63397870-63397889 | Msa1115870:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr7_3:63398348-63398367 | Msa1115870:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr7_3:63398568-63398587 | None:intergenic | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr7_3:63397592-63397611 | Msa1115870:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr7_3:63397727-63397746 | Msa1115870:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr7_3:63397773-63397792 | Msa1115870:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr7_3:63397963-63397982 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | + | chr7_3:63397997-63398016 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr7_3:63398028-63398047 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | + | chr7_3:63398040-63398059 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | - | chr7_3:63398037-63398056 | Msa1115870:intron | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr7_3:63398101-63398120 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr7_3:63398100-63398119 | Msa1115870:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr7_3:63398108-63398127 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr7_3:63398108-63398127 | Msa1115870:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr7_3:63398109-63398128 | Msa1115870:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr7_3:63398132-63398151 | Msa1115870:CDS | 30.0% | |
| ! | ACAACCATTACATTTTGTGT+CGG | + | chr7_3:63398139-63398158 | None:intergenic | 30.0% |
| ATGTAATGGTTGTATGTGAT+TGG | - | chr7_3:63398146-63398165 | Msa1115870:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr7_3:63398274-63398293 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr7_3:63398277-63398296 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCTT+GGG | + | chr7_3:63398452-63398471 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr7_3:63398505-63398524 | Msa1115870:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr7_3:63398512-63398531 | Msa1115870:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr7_3:63398627-63398646 | Msa1115870:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr7_3:63398689-63398708 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr7_3:63398690-63398709 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr7_3:63398702-63398721 | Msa1115870:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr7_3:63398715-63398734 | None:intergenic | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr7_3:63397592-63397611 | Msa1115870:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr7_3:63397727-63397746 | Msa1115870:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr7_3:63397773-63397792 | Msa1115870:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr7_3:63397963-63397982 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | + | chr7_3:63397997-63398016 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr7_3:63398028-63398047 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | + | chr7_3:63398040-63398059 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | - | chr7_3:63398037-63398056 | Msa1115870:intron | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr7_3:63398101-63398120 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr7_3:63398100-63398119 | Msa1115870:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr7_3:63398108-63398127 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr7_3:63398108-63398127 | Msa1115870:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr7_3:63398109-63398128 | Msa1115870:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr7_3:63398132-63398151 | Msa1115870:CDS | 30.0% | |
| ! | ACAACCATTACATTTTGTGT+CGG | + | chr7_3:63398139-63398158 | None:intergenic | 30.0% |
| ATGTAATGGTTGTATGTGAT+TGG | - | chr7_3:63398146-63398165 | Msa1115870:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr7_3:63398274-63398293 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr7_3:63398277-63398296 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCTT+GGG | + | chr7_3:63398452-63398471 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr7_3:63398505-63398524 | Msa1115870:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr7_3:63398512-63398531 | Msa1115870:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr7_3:63398627-63398646 | Msa1115870:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr7_3:63398689-63398708 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr7_3:63398690-63398709 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr7_3:63398702-63398721 | Msa1115870:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr7_3:63398715-63398734 | None:intergenic | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr7_3:63397722-63397741 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr7_3:63397797-63397816 | Msa1115870:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr7_3:63397798-63397817 | Msa1115870:CDS | 35.0% | |
| GCAATGTTCTTACTTGTGTT+TGG | - | chr7_3:63397836-63397855 | Msa1115870:CDS | 35.0% | |
| TTCTTACTTGTGTTTGGACA+TGG | - | chr7_3:63397842-63397861 | Msa1115870:CDS | 35.0% | |
| TTCAAAGTGATCCACGATAT+TGG | - | chr7_3:63398014-63398033 | Msa1115870:intron | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr7_3:63398175-63398194 | Msa1115870:intron | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr7_3:63398179-63398198 | Msa1115870:intron | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr7_3:63398180-63398199 | Msa1115870:intron | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr7_3:63398355-63398374 | Msa1115870:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr7_3:63398409-63398428 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCT+TGG | + | chr7_3:63398453-63398472 | None:intergenic | 35.0% |
| AGGGTTTGAAAATAACAACG+AGG | - | chr7_3:63398453-63398472 | Msa1115870:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr7_3:63398644-63398663 | Msa1115870:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr7_3:63398755-63398774 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr7_3:63398762-63398781 | Msa1115870:CDS | 35.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr7_3:63397722-63397741 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr7_3:63397797-63397816 | Msa1115870:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr7_3:63397798-63397817 | Msa1115870:CDS | 35.0% | |
| GCAATGTTCTTACTTGTGTT+TGG | - | chr7_3:63397836-63397855 | Msa1115870:CDS | 35.0% | |
| TTCTTACTTGTGTTTGGACA+TGG | - | chr7_3:63397842-63397861 | Msa1115870:CDS | 35.0% | |
| TTCAAAGTGATCCACGATAT+TGG | - | chr7_3:63398014-63398033 | Msa1115870:intron | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr7_3:63398175-63398194 | Msa1115870:intron | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr7_3:63398179-63398198 | Msa1115870:intron | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr7_3:63398180-63398199 | Msa1115870:intron | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr7_3:63398355-63398374 | Msa1115870:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr7_3:63398409-63398428 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCT+TGG | + | chr7_3:63398453-63398472 | None:intergenic | 35.0% |
| AGGGTTTGAAAATAACAACG+AGG | - | chr7_3:63398453-63398472 | Msa1115870:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr7_3:63398644-63398663 | Msa1115870:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr7_3:63398755-63398774 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr7_3:63398762-63398781 | Msa1115870:CDS | 35.0% | |
| TTCTTTAGTGGCTGCATTGA+TGG | - | chr7_3:63397604-63397623 | Msa1115870:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | - | chr7_3:63397605-63397624 | Msa1115870:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr7_3:63397662-63397681 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr7_3:63397662-63397681 | Msa1115870:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr7_3:63397663-63397682 | Msa1115870:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr7_3:63397692-63397711 | Msa1115870:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr7_3:63397693-63397712 | Msa1115870:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr7_3:63397799-63397818 | Msa1115870:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr7_3:63397806-63397825 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr7_3:63397807-63397826 | None:intergenic | 40.0% | |
| GTCAAAAACACGAGCATCAT+GGG | + | chr7_3:63398215-63398234 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr7_3:63398237-63398256 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr7_3:63398422-63398441 | Msa1115870:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr7_3:63398591-63398610 | Msa1115870:CDS | 40.0% | |
| TTCTTTAGTGGCTGCATTGA+TGG | - | chr7_3:63397604-63397623 | Msa1115870:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | - | chr7_3:63397605-63397624 | Msa1115870:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr7_3:63397662-63397681 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr7_3:63397662-63397681 | Msa1115870:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr7_3:63397663-63397682 | Msa1115870:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr7_3:63397692-63397711 | Msa1115870:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr7_3:63397693-63397712 | Msa1115870:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr7_3:63397799-63397818 | Msa1115870:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr7_3:63397806-63397825 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr7_3:63397807-63397826 | None:intergenic | 40.0% | |
| GTCAAAAACACGAGCATCAT+GGG | + | chr7_3:63398215-63398234 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr7_3:63398237-63398256 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr7_3:63398422-63398441 | Msa1115870:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr7_3:63398591-63398610 | Msa1115870:CDS | 40.0% | |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr7_3:63397811-63397830 | Msa1115870:CDS | 45.0% | |
| ACTTGTGTTTGGACATGGAG+TGG | - | chr7_3:63397847-63397866 | Msa1115870:CDS | 45.0% | |
| CTTGTGTTTGGACATGGAGT+GGG | - | chr7_3:63397848-63397867 | Msa1115870:CDS | 45.0% | |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr7_3:63397884-63397903 | Msa1115870:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr7_3:63397898-63397917 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | + | chr7_3:63397980-63397999 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | + | chr7_3:63397989-63398008 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | - | chr7_3:63398049-63398068 | Msa1115870:intron | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr7_3:63398216-63398235 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr7_3:63398259-63398278 | Msa1115870:intron | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr7_3:63398268-63398287 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr7_3:63398391-63398410 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr7_3:63398651-63398670 | Msa1115870:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr7_3:63397811-63397830 | Msa1115870:CDS | 45.0% | |
| ACTTGTGTTTGGACATGGAG+TGG | - | chr7_3:63397847-63397866 | Msa1115870:CDS | 45.0% | |
| CTTGTGTTTGGACATGGAGT+GGG | - | chr7_3:63397848-63397867 | Msa1115870:CDS | 45.0% | |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr7_3:63397884-63397903 | Msa1115870:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr7_3:63397898-63397917 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | + | chr7_3:63397980-63397999 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | + | chr7_3:63397989-63398008 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | - | chr7_3:63398049-63398068 | Msa1115870:intron | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr7_3:63398216-63398235 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr7_3:63398259-63398278 | Msa1115870:intron | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr7_3:63398268-63398287 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr7_3:63398391-63398410 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr7_3:63398651-63398670 | Msa1115870:CDS | 45.0% |
| ! | GCTGCATTGATGGGTGAGTA+TGG | - | chr7_3:63397614-63397633 | Msa1115870:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr7_3:63397673-63397692 | Msa1115870:CDS | 50.0% | |
| ! | CGTACCATCGATTGCTCCTA+TGG | + | chr7_3:63398056-63398075 | None:intergenic | 50.0% |
| TGGTACGCATATTCCCTGTG+TGG | - | chr7_3:63398069-63398088 | Msa1115870:intron | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr7_3:63398085-63398104 | None:intergenic | 50.0% | |
| CTTGGGAACGCCGAAAATCA+GGG | + | chr7_3:63398435-63398454 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAA+GGG | - | chr7_3:63398434-63398453 | Msa1115870:CDS | 50.0% |
| ! | GCTGCATTGATGGGTGAGTA+TGG | - | chr7_3:63397614-63397633 | Msa1115870:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr7_3:63397673-63397692 | Msa1115870:CDS | 50.0% | |
| ! | CGTACCATCGATTGCTCCTA+TGG | + | chr7_3:63398056-63398075 | None:intergenic | 50.0% |
| TGGTACGCATATTCCCTGTG+TGG | - | chr7_3:63398069-63398088 | Msa1115870:intron | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr7_3:63398085-63398104 | None:intergenic | 50.0% | |
| CTTGGGAACGCCGAAAATCA+GGG | + | chr7_3:63398435-63398454 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAA+GGG | - | chr7_3:63398434-63398453 | Msa1115870:CDS | 50.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr7_3:63397672-63397691 | Msa1115870:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr7_3:63398086-63398105 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr7_3:63398372-63398391 | Msa1115870:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr7_3:63398373-63398392 | Msa1115870:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr7_3:63398377-63398396 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr7_3:63398374-63398393 | Msa1115870:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr7_3:63398385-63398404 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr7_3:63398382-63398401 | Msa1115870:CDS | 55.0% |
| CCTTGGGAACGCCGAAAATC+AGG | + | chr7_3:63398436-63398455 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+AGG | - | chr7_3:63398433-63398452 | Msa1115870:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr7_3:63397672-63397691 | Msa1115870:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr7_3:63398086-63398105 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr7_3:63398372-63398391 | Msa1115870:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr7_3:63398373-63398392 | Msa1115870:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr7_3:63398377-63398396 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr7_3:63398374-63398393 | Msa1115870:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr7_3:63398385-63398404 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr7_3:63398382-63398401 | Msa1115870:CDS | 55.0% |
| CCTTGGGAACGCCGAAAATC+AGG | + | chr7_3:63398436-63398455 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+AGG | - | chr7_3:63398433-63398452 | Msa1115870:CDS | 55.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr7_3:63398432-63398451 | None:intergenic | 60.0% | |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr7_3:63398432-63398451 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63397551 | 63398822 | 63397551 | ID=Msa1115870;Name=Msa1115870 |
| chr7_3 | mRNA | 63397551 | 63398822 | 63397551 | ID=Msa1115870-mRNA-1;Parent=Msa1115870;Name=Msa1115870-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.5|0|1|1|1|3|0|358 |
| chr7_3 | exon | 63398303 | 63398822 | 63398303 | ID=Msa1115870-mRNA-1:exon:14902;Parent=Msa1115870-mRNA-1 |
| chr7_3 | exon | 63398093 | 63398179 | 63398093 | ID=Msa1115870-mRNA-1:exon:14901;Parent=Msa1115870-mRNA-1 |
| chr7_3 | exon | 63397551 | 63398020 | 63397551 | ID=Msa1115870-mRNA-1:exon:14900;Parent=Msa1115870-mRNA-1 |
| chr7_3 | CDS | 63398303 | 63398822 | 63398303 | ID=Msa1115870-mRNA-1:cds;Parent=Msa1115870-mRNA-1 |
| chr7_3 | CDS | 63398093 | 63398179 | 63398093 | ID=Msa1115870-mRNA-1:cds;Parent=Msa1115870-mRNA-1 |
| chr7_3 | CDS | 63397551 | 63398020 | 63397551 | ID=Msa1115870-mRNA-1:cds;Parent=Msa1115870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
