Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724310 | XP_024631836.2 | 96.992 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724310 | A0A396JPB9 | 76.049 | 405 | 90 | 1 | 1 | 398 | 1 | 405 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031420 | Msa0724310 | 0.920150 | 1.842453e-87 | -8.615850e-47 |
| Msa0602990 | Msa0724310 | 0.881102 | 3.172333e-70 | -8.615850e-47 |
| Msa0724310 | Msa0804800 | 0.841165 | 5.605748e-58 | -8.615850e-47 |
| Msa0724310 | Msa1115870 | 0.800614 | 1.327042e-48 | -8.615850e-47 |
| Msa0514310 | Msa0724310 | 0.976988 | 6.864660e-143 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724310 | MtrunA17_Chr1g0172731 | 76.049 | 405 | 90 | 1 | 1 | 398 | 1 | 405 | 0.0 | 664 |
| Msa0724310 | MtrunA17_Chr1g0190171 | 75.309 | 405 | 93 | 1 | 1 | 398 | 1 | 405 | 0.0 | 660 |
| Msa0724310 | MtrunA17_Chr2g0321401 | 75.000 | 252 | 57 | 1 | 1 | 246 | 1 | 252 | 3.61e-143 | 407 |
| Msa0724310 | MtrunA17_Chr8g0334561 | 73.913 | 253 | 59 | 1 | 1 | 246 | 1 | 253 | 1.41e-141 | 404 |
| Msa0724310 | MtrunA17_Chr2g0285471 | 80.435 | 184 | 36 | 0 | 63 | 246 | 1 | 184 | 3.83e-110 | 321 |
| Msa0724310 | MtrunA17_Chr1g0182341 | 42.697 | 356 | 160 | 6 | 3 | 350 | 15 | 334 | 8.20e-91 | 278 |
| Msa0724310 | MtrunA17_Chr6g0478531 | 40.517 | 348 | 197 | 6 | 35 | 380 | 15 | 354 | 1.28e-83 | 260 |
| Msa0724310 | MtrunA17_Chr6g0477141 | 42.025 | 326 | 184 | 3 | 15 | 338 | 96 | 418 | 1.40e-83 | 263 |
| Msa0724310 | MtrunA17_Chr7g0226311 | 42.857 | 322 | 173 | 6 | 59 | 377 | 9 | 322 | 1.27e-74 | 235 |
| Msa0724310 | MtrunA17_Chr8g0391981 | 37.808 | 365 | 205 | 7 | 18 | 378 | 36 | 382 | 7.93e-71 | 228 |
| Msa0724310 | MtrunA17_Chr1g0207391 | 39.610 | 308 | 165 | 7 | 45 | 343 | 74 | 369 | 2.50e-67 | 219 |
| Msa0724310 | MtrunA17_Chr7g0267201 | 48.125 | 160 | 75 | 2 | 66 | 217 | 1 | 160 | 3.35e-47 | 159 |
| Msa0724310 | MtrunA17_Chr3g0140031 | 66.071 | 112 | 31 | 1 | 1 | 105 | 1 | 112 | 4.27e-46 | 154 |
| Msa0724310 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 342 | 399 | 1 | 58 | 3.63e-28 | 105 |
| Msa0724310 | MtrunA17_Chr1g0211031 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.57e-27 | 103 |
| Msa0724310 | MtrunA17_Chr8g0370251 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.57e-27 | 103 |
| Msa0724310 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 2.65e-26 | 100 |
| Msa0724310 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 3.03e-26 | 100 |
| Msa0724310 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 1.78e-19 | 84.3 |
| Msa0724310 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 246 | 364 | 10 | 126 | 1.67e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724310 | AT5G41980.1 | 37.059 | 340 | 193 | 6 | 33 | 371 | 15 | 334 | 1.58e-70 | 226 |
| Msa0724310 | AT1G43722.1 | 36.102 | 313 | 184 | 6 | 4 | 308 | 16 | 320 | 8.78e-60 | 197 |
| Msa0724310 | AT5G28730.1 | 33.992 | 253 | 129 | 6 | 33 | 283 | 2 | 218 | 5.90e-40 | 144 |
| Msa0724310 | AT3G30525.1 | 36.686 | 169 | 101 | 2 | 172 | 335 | 1 | 168 | 5.36e-30 | 114 |
| Msa0724310 | AT5G35695.1 | 41.727 | 139 | 67 | 3 | 210 | 346 | 25 | 151 | 2.82e-28 | 110 |
| Msa0724310 | AT5G28950.1 | 44.318 | 88 | 49 | 0 | 154 | 241 | 11 | 98 | 2.25e-20 | 87.4 |
| Msa0724310 | AT4G10890.3 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.30e-16 | 80.9 |
| Msa0724310 | AT4G10890.1 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.30e-16 | 80.9 |
| Msa0724310 | AT4G10890.2 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.30e-16 | 80.9 |
Find 73 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 5_1:+22607067 | Msa0724310:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.196921 | 5_1:+22606685 | Msa0724310:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 5_1:+22607287 | Msa0724310:CDS |
| CCCTGGGAACGCCGAAAATC+AGG | 0.297546 | 5_1:-22607018 | None:intergenic |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 5_1:-22607297 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 5_1:+22606125 | None:intergenic |
| TTCTTTAGTGGCTGCATTGA+TGG | 0.324344 | 5_1:+22606189 | Msa0724310:CDS |
| TTCGTCCAATAAATCTAGTT+TGG | 0.330713 | 5_1:-22606690 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 5_1:-22606959 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 5_1:-22607150 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 5_1:+22606599 | Msa0724310:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 5_1:+22607090 | Msa0724310:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 5_1:+22607212 | Msa0724310:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 5_1:+22607199 | Msa0724310:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 5_1:+22606247 | Msa0724310:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 5_1:-22606389 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 5_1:+22606358 | Msa0724310:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 5_1:+22606967 | Msa0724310:CDS |
| TGTACCATCGATTGCTCCTA+TGG | 0.423826 | 5_1:-22606638 | None:intergenic |
| GCAATGTTCTTACTTGTTGT+TGG | 0.423911 | 5_1:+22606421 | Msa0724310:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 5_1:-22607272 | None:intergenic |
| GCTGCATTGATGGGTGAGTA+TGG | 0.462334 | 5_1:+22606199 | Msa0724310:CDS |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 5_1:-22606850 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 5_1:+22606257 | Msa0724310:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 5_1:-22606967 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 5_1:+22606427 | Msa0724310:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 5_1:-22606545 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 5_1:+22606933 | Msa0724310:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 5_1:+22606940 | Msa0724310:CDS |
| ACTAGATTTATTGGACGAAA+GGG | 0.486947 | 5_1:+22606694 | Msa0724310:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 5_1:+22607236 | Msa0724310:CDS |
| TCTTTAGTGGCTGCATTGAT+GGG | 0.490802 | 5_1:+22606190 | Msa0724310:CDS |
| GATGAATCACGTTCGAAACT+CGG | 0.500586 | 5_1:+22607347 | Msa0724310:CDS |
| ATGTAATGGCTGTATGTGAT+TGG | 0.504425 | 5_1:+22606731 | Msa0724310:CDS |
| AACTAGATTTATTGGACGAA+AGG | 0.514080 | 5_1:+22606693 | Msa0724310:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 5_1:+22606958 | Msa0724310:CDS |
| TTGTTATGAGATGTTTCGAA+TGG | 0.520234 | 5_1:+22606312 | Msa0724310:CDS |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 5_1:-22606991 | None:intergenic |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 5_1:+22606383 | Msa0724310:CDS |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 5_1:-22606388 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 5_1:+22607176 | Msa0724310:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 5_1:-22606819 | None:intergenic |
| AATAAATCTAGTTTGGTCAC+TGG | 0.549153 | 5_1:-22606683 | None:intergenic |
| AACATCTCATAACAACGAGT+TGG | 0.551166 | 5_1:-22606304 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 5_1:+22606957 | Msa0724310:CDS |
| TCACATAGGGGTAGAAGAGA+TGG | 0.556124 | 5_1:+22606396 | Msa0724310:CDS |
| CCTGGGAACGCCGAAAATCA+GGG | 0.556357 | 5_1:-22607017 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 5_1:+22607229 | Msa0724310:CDS |
| TCACAGTTTCTCCTGAGTGT+TGG | 0.566113 | 5_1:-22606480 | None:intergenic |
| GTAATAGAATGATTCAAGAA+AGG | 0.570517 | 5_1:+22606455 | Msa0724310:CDS |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 5_1:+22606432 | Msa0724310:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 5_1:+22606433 | Msa0724310:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.575639 | 5_1:+22606469 | Msa0724310:CDS |
| ATATCCGACACAAAATGTAA+TGG | 0.578336 | 5_1:+22606717 | Msa0724310:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 5_1:+22606382 | Msa0724310:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 5_1:-22606244 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 5_1:-22606856 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 5_1:+22606277 | Msa0724310:CDS |
| TGGTACACATATTCCTTGTG+TGG | 0.615164 | 5_1:+22606654 | Msa0724310:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 5_1:+22606248 | Msa0724310:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 5_1:+22606258 | Msa0724310:CDS |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 5_1:-22607271 | None:intergenic |
| GCATGACTATCACGGAACAA+AGG | 0.635948 | 5_1:-22606571 | None:intergenic |
| TCACGGAACAAAGGATCTTG+AGG | 0.641766 | 5_1:-22606562 | None:intergenic |
| AACGTGATTCATCTCAGATG+AGG | 0.643146 | 5_1:-22607337 | None:intergenic |
| TCACTGGCACTAACCACACA+AGG | 0.675472 | 5_1:-22606667 | None:intergenic |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 5_1:+22606278 | Msa0724310:CDS |
| AATGCCATAGGAGCAATCGA+TGG | 0.692262 | 5_1:+22606634 | Msa0724310:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 5_1:+22606959 | Msa0724310:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 5_1:-22606973 | None:intergenic |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 5_1:+22606384 | Msa0724310:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 5_1:-22607014 | None:intergenic |
| GGGGTTTGAAAATAACAACG+AGG | 0.822642 | 5_1:+22607038 | Msa0724310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | + | chr5_1:22606916-22606935 | Msa0724310:intron | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | + | chr5_1:22606916-22606935 | Msa0724310:intron | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | - | chr5_1:22606882-22606901 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | + | chr5_1:22606930-22606949 | Msa0724310:intron | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | - | chr5_1:22606882-22606901 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | + | chr5_1:22606930-22606949 | Msa0724310:intron | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | - | chr5_1:22606865-22606884 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | + | chr5_1:22607067-22607086 | Msa0724310:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | + | chr5_1:22607199-22607218 | Msa0724310:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | - | chr5_1:22606865-22606884 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | + | chr5_1:22607067-22607086 | Msa0724310:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | + | chr5_1:22607199-22607218 | Msa0724310:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | - | chr5_1:22606343-22606362 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | + | chr5_1:22606455-22606474 | Msa0724310:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | + | chr5_1:22606933-22606952 | Msa0724310:intron | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | - | chr5_1:22607153-22607172 | None:intergenic | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | - | chr5_1:22606343-22606362 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | + | chr5_1:22606455-22606474 | Msa0724310:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | + | chr5_1:22606933-22606952 | Msa0724310:intron | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | - | chr5_1:22607153-22607172 | None:intergenic | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | + | chr5_1:22606177-22606196 | Msa0724310:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | + | chr5_1:22606312-22606331 | Msa0724310:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | + | chr5_1:22606358-22606377 | Msa0724310:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | - | chr5_1:22606548-22606567 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | - | chr5_1:22606582-22606601 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | - | chr5_1:22606613-22606632 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | - | chr5_1:22606625-22606644 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | + | chr5_1:22606622-22606641 | Msa0724310:CDS | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | - | chr5_1:22606686-22606705 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | + | chr5_1:22606685-22606704 | Msa0724310:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | - | chr5_1:22606693-22606712 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | + | chr5_1:22606693-22606712 | Msa0724310:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | + | chr5_1:22606694-22606713 | Msa0724310:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | + | chr5_1:22606717-22606736 | Msa0724310:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | - | chr5_1:22606859-22606878 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | - | chr5_1:22606862-22606881 | None:intergenic | 30.0% | |
| ! | TGCACAATAGAAAGAACTTT+TGG | + | chr5_1:22607090-22607109 | Msa0724310:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | + | chr5_1:22607097-22607116 | Msa0724310:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | + | chr5_1:22607212-22607231 | Msa0724310:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | - | chr5_1:22607274-22607293 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | - | chr5_1:22607275-22607294 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | + | chr5_1:22607287-22607306 | Msa0724310:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | - | chr5_1:22607300-22607319 | None:intergenic | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | + | chr5_1:22606177-22606196 | Msa0724310:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | + | chr5_1:22606312-22606331 | Msa0724310:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | + | chr5_1:22606358-22606377 | Msa0724310:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | - | chr5_1:22606548-22606567 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | - | chr5_1:22606582-22606601 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | - | chr5_1:22606613-22606632 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | - | chr5_1:22606625-22606644 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | + | chr5_1:22606622-22606641 | Msa0724310:CDS | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | - | chr5_1:22606686-22606705 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | + | chr5_1:22606685-22606704 | Msa0724310:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | - | chr5_1:22606693-22606712 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | + | chr5_1:22606693-22606712 | Msa0724310:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | + | chr5_1:22606694-22606713 | Msa0724310:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | + | chr5_1:22606717-22606736 | Msa0724310:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | - | chr5_1:22606859-22606878 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | - | chr5_1:22606862-22606881 | None:intergenic | 30.0% | |
| ! | TGCACAATAGAAAGAACTTT+TGG | + | chr5_1:22607090-22607109 | Msa0724310:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | + | chr5_1:22607097-22607116 | Msa0724310:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | + | chr5_1:22607212-22607231 | Msa0724310:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | - | chr5_1:22607274-22607293 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | - | chr5_1:22607275-22607294 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | + | chr5_1:22607287-22607306 | Msa0724310:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | - | chr5_1:22607300-22607319 | None:intergenic | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | - | chr5_1:22606307-22606326 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | + | chr5_1:22606382-22606401 | Msa0724310:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | + | chr5_1:22606383-22606402 | Msa0724310:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | + | chr5_1:22606421-22606440 | Msa0724310:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | + | chr5_1:22606427-22606446 | Msa0724310:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | + | chr5_1:22606599-22606618 | Msa0724310:CDS | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | - | chr5_1:22606724-22606743 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | + | chr5_1:22606731-22606750 | Msa0724310:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | + | chr5_1:22606760-22606779 | Msa0724310:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | + | chr5_1:22606764-22606783 | Msa0724310:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | + | chr5_1:22606765-22606784 | Msa0724310:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | + | chr5_1:22606940-22606959 | Msa0724310:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | - | chr5_1:22606994-22607013 | None:intergenic | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | - | chr5_1:22607037-22607056 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | + | chr5_1:22607229-22607248 | Msa0724310:CDS | 35.0% |
| AACATCTCATAACAACGAGT+TGG | - | chr5_1:22606307-22606326 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | + | chr5_1:22606382-22606401 | Msa0724310:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | + | chr5_1:22606383-22606402 | Msa0724310:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | + | chr5_1:22606421-22606440 | Msa0724310:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | + | chr5_1:22606427-22606446 | Msa0724310:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | + | chr5_1:22606599-22606618 | Msa0724310:CDS | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | - | chr5_1:22606724-22606743 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | + | chr5_1:22606731-22606750 | Msa0724310:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | + | chr5_1:22606760-22606779 | Msa0724310:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | + | chr5_1:22606764-22606783 | Msa0724310:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | + | chr5_1:22606765-22606784 | Msa0724310:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | + | chr5_1:22606940-22606959 | Msa0724310:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | - | chr5_1:22606994-22607013 | None:intergenic | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | - | chr5_1:22607037-22607056 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | + | chr5_1:22607229-22607248 | Msa0724310:CDS | 35.0% |
| TTCTTTAGTGGCTGCATTGA+TGG | + | chr5_1:22606189-22606208 | Msa0724310:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | + | chr5_1:22606190-22606209 | Msa0724310:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | - | chr5_1:22606247-22606266 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | + | chr5_1:22606247-22606266 | Msa0724310:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | + | chr5_1:22606248-22606267 | Msa0724310:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | + | chr5_1:22606277-22606296 | Msa0724310:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | + | chr5_1:22606278-22606297 | Msa0724310:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | + | chr5_1:22606384-22606403 | Msa0724310:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | - | chr5_1:22606391-22606410 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | - | chr5_1:22606392-22606411 | None:intergenic | 40.0% | |
| TGGTACACATATTCCTTGTG+TGG | + | chr5_1:22606654-22606673 | Msa0724310:CDS | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | + | chr5_1:22606769-22606788 | Msa0724310:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | - | chr5_1:22606800-22606819 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | - | chr5_1:22606822-22606841 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | + | chr5_1:22607007-22607026 | Msa0724310:CDS | 40.0% |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | - | chr5_1:22607038-22607057 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | + | chr5_1:22607038-22607057 | Msa0724310:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | + | chr5_1:22607176-22607195 | Msa0724310:CDS | 40.0% | |
| AACGTGATTCATCTCAGATG+AGG | - | chr5_1:22607340-22607359 | None:intergenic | 40.0% | |
| GATGAATCACGTTCGAAACT+CGG | + | chr5_1:22607347-22607366 | Msa0724310:CDS | 40.0% | |
| TTCTTTAGTGGCTGCATTGA+TGG | + | chr5_1:22606189-22606208 | Msa0724310:CDS | 40.0% | |
| ! | TCTTTAGTGGCTGCATTGAT+GGG | + | chr5_1:22606190-22606209 | Msa0724310:CDS | 40.0% |
| !! | GTTAGCTCACTAGTTCTACA+TGG | - | chr5_1:22606247-22606266 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | + | chr5_1:22606247-22606266 | Msa0724310:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | + | chr5_1:22606248-22606267 | Msa0724310:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | + | chr5_1:22606277-22606296 | Msa0724310:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | + | chr5_1:22606278-22606297 | Msa0724310:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | + | chr5_1:22606384-22606403 | Msa0724310:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | - | chr5_1:22606391-22606410 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | - | chr5_1:22606392-22606411 | None:intergenic | 40.0% | |
| TGGTACACATATTCCTTGTG+TGG | + | chr5_1:22606654-22606673 | Msa0724310:CDS | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | + | chr5_1:22606769-22606788 | Msa0724310:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | - | chr5_1:22606800-22606819 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | - | chr5_1:22606822-22606841 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | + | chr5_1:22607007-22607026 | Msa0724310:CDS | 40.0% |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | - | chr5_1:22607038-22607057 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | + | chr5_1:22607038-22607057 | Msa0724310:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | + | chr5_1:22607176-22607195 | Msa0724310:CDS | 40.0% | |
| AACGTGATTCATCTCAGATG+AGG | - | chr5_1:22607340-22607359 | None:intergenic | 40.0% | |
| GATGAATCACGTTCGAAACT+CGG | + | chr5_1:22607347-22607366 | Msa0724310:CDS | 40.0% | |
| TCACATAGGGGTAGAAGAGA+TGG | + | chr5_1:22606396-22606415 | Msa0724310:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | + | chr5_1:22606432-22606451 | Msa0724310:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | + | chr5_1:22606433-22606452 | Msa0724310:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | + | chr5_1:22606469-22606488 | Msa0724310:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | - | chr5_1:22606483-22606502 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | - | chr5_1:22606565-22606584 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | - | chr5_1:22606574-22606593 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | + | chr5_1:22606634-22606653 | Msa0724310:CDS | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | - | chr5_1:22606641-22606660 | None:intergenic | 45.0% |
| GGTCAAAAACACGAGCATCA+TGG | - | chr5_1:22606801-22606820 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | + | chr5_1:22606844-22606863 | Msa0724310:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | - | chr5_1:22606853-22606872 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | - | chr5_1:22606976-22606995 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | + | chr5_1:22607236-22607255 | Msa0724310:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | + | chr5_1:22606396-22606415 | Msa0724310:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | + | chr5_1:22606432-22606451 | Msa0724310:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | + | chr5_1:22606433-22606452 | Msa0724310:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | + | chr5_1:22606469-22606488 | Msa0724310:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | - | chr5_1:22606483-22606502 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | - | chr5_1:22606565-22606584 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | - | chr5_1:22606574-22606593 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | + | chr5_1:22606634-22606653 | Msa0724310:CDS | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | - | chr5_1:22606641-22606660 | None:intergenic | 45.0% |
| GGTCAAAAACACGAGCATCA+TGG | - | chr5_1:22606801-22606820 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | + | chr5_1:22606844-22606863 | Msa0724310:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | - | chr5_1:22606853-22606872 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | - | chr5_1:22606976-22606995 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | + | chr5_1:22607236-22607255 | Msa0724310:CDS | 45.0% |
| ! | GCTGCATTGATGGGTGAGTA+TGG | + | chr5_1:22606199-22606218 | Msa0724310:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | + | chr5_1:22606258-22606277 | Msa0724310:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+AGG | - | chr5_1:22606670-22606689 | None:intergenic | 50.0% | |
| ! | GCTGCATTGATGGGTGAGTA+TGG | + | chr5_1:22606199-22606218 | Msa0724310:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | + | chr5_1:22606258-22606277 | Msa0724310:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+AGG | - | chr5_1:22606670-22606689 | None:intergenic | 50.0% | |
| GTGAGCTAACAGGGCATGCA+TGG | + | chr5_1:22606257-22606276 | Msa0724310:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | + | chr5_1:22606957-22606976 | Msa0724310:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | + | chr5_1:22606958-22606977 | Msa0724310:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | - | chr5_1:22606962-22606981 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | + | chr5_1:22606959-22606978 | Msa0724310:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | - | chr5_1:22606970-22606989 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | + | chr5_1:22606967-22606986 | Msa0724310:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | - | chr5_1:22607020-22607039 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | + | chr5_1:22607018-22607037 | Msa0724310:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | + | chr5_1:22607019-22607038 | Msa0724310:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | + | chr5_1:22606257-22606276 | Msa0724310:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | + | chr5_1:22606957-22606976 | Msa0724310:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | + | chr5_1:22606958-22606977 | Msa0724310:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | - | chr5_1:22606962-22606981 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | + | chr5_1:22606959-22606978 | Msa0724310:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | - | chr5_1:22606970-22606989 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | + | chr5_1:22606967-22606986 | Msa0724310:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | - | chr5_1:22607020-22607039 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | + | chr5_1:22607018-22607037 | Msa0724310:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | + | chr5_1:22607019-22607038 | Msa0724310:CDS | 55.0% |
| GGGAACGCCGAAAATCAGGG+AGG | - | chr5_1:22607017-22607036 | None:intergenic | 60.0% | |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | + | chr5_1:22607017-22607036 | Msa0724310:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | - | chr5_1:22607021-22607040 | None:intergenic | 60.0% | |
| GGGAACGCCGAAAATCAGGG+AGG | - | chr5_1:22607017-22607036 | None:intergenic | 60.0% | |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | + | chr5_1:22607017-22607036 | Msa0724310:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | - | chr5_1:22607021-22607040 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 22606136 | 22607407 | 22606136 | ID=Msa0724310;Name=Msa0724310 |
| chr5_1 | mRNA | 22606136 | 22607407 | 22606136 | ID=Msa0724310-mRNA-1;Parent=Msa0724310;Name=Msa0724310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0|1|1|1|2|0|399 |
| chr5_1 | exon | 22606136 | 22606865 | 22606136 | ID=Msa0724310-mRNA-1:exon:8558;Parent=Msa0724310-mRNA-1 |
| chr5_1 | exon | 22606938 | 22607407 | 22606938 | ID=Msa0724310-mRNA-1:exon:8559;Parent=Msa0724310-mRNA-1 |
| chr5_1 | CDS | 22606136 | 22606865 | 22606136 | ID=Msa0724310-mRNA-1:cds;Parent=Msa0724310-mRNA-1 |
| chr5_1 | CDS | 22606938 | 22607407 | 22606938 | ID=Msa0724310-mRNA-1:cds;Parent=Msa0724310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
