Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032420 | XP_003590981.1 | 97.679 | 560 | 13 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032420 | sp|Q501D1|Y1490_ARATH | 54.246 | 577 | 242 | 9 | 1 | 560 | 1 | 572 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032420 | Msa0172060 | 0.958046 | 6.181691e-116 | -8.615850e-47 |
| Msa0032420 | Msa0172080 | 0.816333 | 5.836226e-52 | -8.615850e-47 |
| Msa0032420 | Msa0218370 | 0.806074 | 9.814927e-50 | -8.615850e-47 |
| Msa0032420 | Msa0236420 | 0.815481 | 9.044307e-52 | -8.615850e-47 |
| Msa0032420 | Msa0270960 | 0.814284 | 1.666011e-51 | -8.615850e-47 |
| Msa0032420 | Msa0685090 | 0.809293 | 2.032638e-50 | -8.615850e-47 |
| Msa0032420 | Msa1122150 | 0.822341 | 2.494914e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032420 | MtrunA17_Chr1g0190341 | 97.679 | 560 | 13 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1141 |
| Msa0032420 | MtrunA17_Chr1g0190371 | 97.679 | 560 | 13 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1141 |
| Msa0032420 | MtrunA17_Chr5g0395701 | 56.140 | 570 | 233 | 7 | 4 | 558 | 38 | 605 | 0.0 | 663 |
| Msa0032420 | MtrunA17_Chr4g0039581 | 55.536 | 569 | 238 | 8 | 1 | 558 | 3 | 567 | 0.0 | 658 |
| Msa0032420 | MtrunA17_Chr2g0309191 | 46.903 | 565 | 268 | 12 | 6 | 558 | 8 | 552 | 5.74e-174 | 503 |
| Msa0032420 | MtrunA17_Chr2g0310081 | 45.652 | 552 | 263 | 10 | 20 | 558 | 51 | 578 | 1.28e-169 | 493 |
| Msa0032420 | MtrunA17_Chr2g0309181 | 45.833 | 552 | 272 | 10 | 18 | 558 | 50 | 585 | 1.85e-167 | 488 |
| Msa0032420 | MtrunA17_Chr4g0074491 | 44.646 | 551 | 274 | 10 | 23 | 558 | 12 | 546 | 2.01e-160 | 468 |
| Msa0032420 | MtrunA17_Chr2g0309171 | 45.438 | 537 | 264 | 9 | 35 | 558 | 631 | 1151 | 1.86e-152 | 466 |
| Msa0032420 | MtrunA17_Chr2g0309171 | 45.403 | 533 | 261 | 9 | 35 | 554 | 14 | 529 | 1.20e-144 | 446 |
| Msa0032420 | MtrunA17_Chr2g0309131 | 42.435 | 542 | 230 | 8 | 23 | 558 | 20 | 485 | 6.90e-141 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032420 | AT3G04350.1 | 64.336 | 572 | 187 | 7 | 1 | 560 | 1 | 567 | 0.0 | 764 |
| Msa0032420 | AT5G18490.1 | 63.121 | 564 | 188 | 8 | 4 | 560 | 3 | 553 | 0.0 | 736 |
| Msa0032420 | AT3G04350.2 | 64.860 | 535 | 174 | 6 | 35 | 560 | 16 | 545 | 0.0 | 724 |
| Msa0032420 | AT1G04090.1 | 54.246 | 577 | 242 | 9 | 1 | 560 | 1 | 572 | 0.0 | 652 |
| Msa0032420 | AT5G43950.1 | 53.752 | 573 | 241 | 9 | 1 | 558 | 1 | 564 | 0.0 | 635 |
| Msa0032420 | AT2G44260.1 | 45.404 | 544 | 269 | 9 | 23 | 558 | 29 | 552 | 5.35e-167 | 486 |
| Msa0032420 | AT2G44230.1 | 44.973 | 547 | 265 | 10 | 23 | 558 | 20 | 541 | 2.31e-166 | 484 |
| Msa0032420 | AT2G44260.2 | 45.301 | 532 | 263 | 9 | 35 | 558 | 71 | 582 | 6.93e-162 | 474 |
| Msa0032420 | AT3G01870.1 | 40.820 | 561 | 292 | 13 | 15 | 558 | 46 | 583 | 3.21e-138 | 413 |
| Msa0032420 | AT3G01880.1 | 41.103 | 562 | 291 | 14 | 15 | 558 | 50 | 589 | 1.09e-136 | 409 |
Find 185 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1_1:+59517617 | None:intergenic |
| TAAACAAGTTTGAGAAAATT+TGG | 0.134162 | 1_1:-59518566 | Msa0032420:CDS |
| ACTGCGTGAATGCGTAAATT+TGG | 0.163385 | 1_1:+59516906 | None:intergenic |
| ACACTGAAAACAAAAGAATT+TGG | 0.203333 | 1_1:+59516706 | None:intergenic |
| GTAGTTACTTATAGCTTTCT+TGG | 0.219890 | 1_1:-59516598 | Msa0032420:three_prime_UTR |
| CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1_1:-59517498 | Msa0032420:CDS |
| TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1_1:-59517124 | Msa0032420:CDS |
| CACTTAATTACTCATTAATA+TGG | 0.264581 | 1_1:-59518344 | Msa0032420:CDS |
| GGATCAGAGTCAAAGAATTC+AGG | 0.279082 | 1_1:+59519395 | None:intergenic |
| AGAGGTGAAGGAAGAGAAAA+AGG | 0.282917 | 1_1:+59519368 | None:intergenic |
| AAATCTGAAACAAGTAATTA+AGG | 0.292966 | 1_1:-59519593 | None:intergenic |
| ACAAAAGAATTTGGATTGTC+TGG | 0.303145 | 1_1:+59516715 | None:intergenic |
| AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1_1:+59517082 | None:intergenic |
| CGTATTGCTTGTAATGGAAT+AGG | 0.307831 | 1_1:-59516430 | Msa0032420:three_prime_UTR |
| GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1_1:+59517366 | None:intergenic |
| TCCTTTACCATAAGAATGAT+TGG | 0.315404 | 1_1:+59516990 | None:intergenic |
| TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1_1:+59517436 | None:intergenic |
| ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1_1:+59517163 | None:intergenic |
| GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1_1:-59517792 | Msa0032420:CDS |
| CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1_1:+59518222 | None:intergenic |
| TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1_1:+59518231 | None:intergenic |
| ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1_1:-59517479 | Msa0032420:CDS |
| TCTCTCTTCTTTCTAATAAG+AGG | 0.345722 | 1_1:-59519476 | Msa0032420:five_prime_UTR |
| ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1_1:-59518308 | Msa0032420:CDS |
| TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1_1:+59517091 | None:intergenic |
| GACGGACCAGATATCAAGTT+TGG | 0.351841 | 1_1:+59516800 | None:intergenic |
| ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1_1:-59517171 | Msa0032420:CDS |
| CATGCTCTTATTGAGCATTA+CGG | 0.358178 | 1_1:-59517958 | Msa0032420:CDS |
| AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1_1:+59517625 | None:intergenic |
| TTCATTCGTATTGCTTGTAA+TGG | 0.364694 | 1_1:-59516436 | Msa0032420:three_prime_UTR |
| TCATCTTTCTGTCCTAATAA+TGG | 0.365027 | 1_1:-59516959 | Msa0032420:three_prime_UTR |
| TGGAGATGCACAAATTCTAA+TGG | 0.365237 | 1_1:-59518546 | Msa0032420:CDS |
| GCTGGATCCAATCATTCTTA+TGG | 0.369974 | 1_1:-59516997 | Msa0032420:three_prime_UTR |
| ATGCTCTTATTGAGCATTAC+GGG | 0.370883 | 1_1:-59517957 | Msa0032420:CDS |
| TAAGAGGTTGCTTTGTGGTT+TGG | 0.377108 | 1_1:-59519460 | Msa0032420:five_prime_UTR |
| GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1_1:+59517618 | None:intergenic |
| TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1_1:-59517106 | Msa0032420:CDS |
| AAAATTCCAAACTTGATATC+TGG | 0.383640 | 1_1:-59516806 | Msa0032420:three_prime_UTR |
| AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1_1:+59518236 | None:intergenic |
| TTACTCATTAATATGGTGTA+TGG | 0.386638 | 1_1:-59518337 | Msa0032420:CDS |
| CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1_1:+59517134 | None:intergenic |
| CTGCGTGAATGCGTAAATTT+GGG | 0.393049 | 1_1:+59516907 | None:intergenic |
| GTGGTTTGGTAAGGGATGTT+TGG | 0.395720 | 1_1:-59519446 | Msa0032420:exon |
| ATTATTTCTCGCATCTTCAT+TGG | 0.404816 | 1_1:+59517756 | None:intergenic |
| TAAGATAATATTATTGCTAA+AGG | 0.408489 | 1_1:-59516480 | Msa0032420:three_prime_UTR |
| TCATGCAGGGACTTACCTTC+AGG | 0.422603 | 1_1:-59517395 | Msa0032420:CDS |
| CATATTAATGAGTAATTAAG+TGG | 0.423515 | 1_1:+59518345 | None:intergenic |
| CCTTGTGGCCATTGCGGAAG+AGG | 0.425442 | 1_1:+59519350 | None:intergenic |
| AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1_1:+59517637 | None:intergenic |
| GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1_1:-59517697 | Msa0032420:CDS |
| GCTCAATAAGAGCATGAATC+TGG | 0.427486 | 1_1:+59517965 | None:intergenic |
| CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1_1:+59518273 | None:intergenic |
| TGTATGTATAGAAGCTGTAT+AGG | 0.430694 | 1_1:-59516637 | Msa0032420:three_prime_UTR |
| GGTTGCTTTGTGGTTTGGTA+AGG | 0.431847 | 1_1:-59519455 | Msa0032420:five_prime_UTR |
| CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1_1:-59517379 | Msa0032420:CDS |
| CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1_1:-59517578 | Msa0032420:CDS |
| TCCAATCATTCTTATGGTAA+AGG | 0.432784 | 1_1:-59516991 | Msa0032420:three_prime_UTR |
| TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1_1:-59517579 | Msa0032420:CDS |
| GATACATGGCGACGATATCT+TGG | 0.440980 | 1_1:+59516663 | None:intergenic |
| GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1_1:-59517534 | Msa0032420:CDS |
| TCTAATAAGAGGTTGCTTTG+TGG | 0.443374 | 1_1:-59519465 | Msa0032420:five_prime_UTR |
| ATATTATTGCTAAAGGTTGA+TGG | 0.447274 | 1_1:-59516473 | Msa0032420:three_prime_UTR |
| TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1_1:+59518282 | None:intergenic |
| GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1_1:-59517373 | Msa0032420:CDS |
| GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1_1:+59517916 | None:intergenic |
| CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1_1:+59518608 | None:intergenic |
| TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1_1:+59517118 | None:intergenic |
| AGAACATGTATATACATTTG+TGG | 0.463778 | 1_1:-59516511 | Msa0032420:three_prime_UTR |
| ATTAGCCATTTCTCATGAGC+TGG | 0.464452 | 1_1:-59517015 | Msa0032420:three_prime_UTR |
| TGTAGCTCCAATGTTTAAGT+TGG | 0.465838 | 1_1:-59516555 | Msa0032420:three_prime_UTR |
| TATTATTGCTAAAGGTTGAT+GGG | 0.466225 | 1_1:-59516472 | Msa0032420:three_prime_UTR |
| GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1_1:+59517976 | None:intergenic |
| AATACACAACCTTGCGATAG+AGG | 0.468770 | 1_1:-59518114 | Msa0032420:CDS |
| CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1_1:+59518483 | None:intergenic |
| AAACAGAATAAGAGAGAAGA+GGG | 0.469330 | 1_1:-59519529 | Msa0032420:five_prime_UTR |
| GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1_1:-59518428 | Msa0032420:CDS |
| TGGATCCAGCTCATGAGAAA+TGG | 0.475127 | 1_1:+59517010 | None:intergenic |
| TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1_1:-59517497 | Msa0032420:CDS |
| CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1_1:-59517668 | Msa0032420:CDS |
| ATTCGATTTGGAGTTTATTG+AGG | 0.477400 | 1_1:-59517467 | Msa0032420:CDS |
| GAGAAATGGCTAATAGCATA+TGG | 0.480178 | 1_1:+59517024 | None:intergenic |
| TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1_1:-59517746 | Msa0032420:CDS |
| GCAGGCACGTCAGTGGTCAT+TGG | 0.482146 | 1_1:-59516881 | Msa0032420:three_prime_UTR |
| ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1_1:+59518276 | None:intergenic |
| TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1_1:+59518239 | None:intergenic |
| ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1_1:-59517292 | Msa0032420:CDS |
| GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1_1:-59517084 | Msa0032420:CDS |
| CTCACAAACTTCTGTTAGAT+CGG | 0.493970 | 1_1:+59518191 | None:intergenic |
| TTCCTTCACCTCTTCCGCAA+TGG | 0.497042 | 1_1:-59519358 | Msa0032420:CDS |
| GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1_1:+59517638 | None:intergenic |
| GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1_1:-59518609 | Msa0032420:CDS |
| CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1_1:-59518046 | Msa0032420:CDS |
| GATCAGAGTCAAAGAATTCA+GGG | 0.505738 | 1_1:+59519396 | None:intergenic |
| CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1_1:+59517545 | None:intergenic |
| TACGCATTCACGCAGTCGGC+AGG | 0.512700 | 1_1:-59516899 | Msa0032420:three_prime_UTR |
| CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1_1:+59517669 | None:intergenic |
| CATGCTAGCTACCCTCATGC+AGG | 0.516116 | 1_1:-59517409 | Msa0032420:CDS |
| GGTGGCCGTTGGATCTAGAT+TGG | 0.518329 | 1_1:+59516778 | None:intergenic |
| TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1_1:-59518289 | Msa0032420:CDS |
| GTTGCTTTGTGGTTTGGTAA+GGG | 0.528648 | 1_1:-59519454 | Msa0032420:five_prime_UTR |
| AATTCTAATGGAAAGGCACT+AGG | 0.529623 | 1_1:-59518534 | Msa0032420:CDS |
| CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1_1:-59517394 | Msa0032420:CDS |
| TTTCTCGCATCTTCATTGGT+AGG | 0.535231 | 1_1:+59517760 | None:intergenic |
| AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1_1:-59517116 | Msa0032420:CDS |
| GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1_1:-59517857 | Msa0032420:CDS |
| ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1_1:-59517115 | Msa0032420:CDS |
| GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1_1:+59517685 | None:intergenic |
| CTATACATACAGTTGATACA+TGG | 0.547754 | 1_1:+59516649 | None:intergenic |
| AAGAGCTGGGGATTCTGACT+CGG | 0.549133 | 1_1:+59518374 | None:intergenic |
| AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1_1:-59518427 | Msa0032420:CDS |
| CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1_1:-59518608 | Msa0032420:CDS |
| GGCCATTGCGGAAGAGGTGA+AGG | 0.550905 | 1_1:+59519356 | None:intergenic |
| ATCAGCACATCGGTGGCCGT+TGG | 0.551235 | 1_1:+59516767 | None:intergenic |
| AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1_1:-59518498 | Msa0032420:CDS |
| AAAACAGAATAAGAGAGAAG+AGG | 0.552501 | 1_1:-59519530 | Msa0032420:five_prime_UTR |
| GTGGCAGTAGTAACCAAGAC+AGG | 0.553725 | 1_1:+59518470 | None:intergenic |
| GACTCCATCACCAAGATACT+CGG | 0.556847 | 1_1:+59517282 | None:intergenic |
| CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1_1:+59518277 | None:intergenic |
| GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1_1:+59517546 | None:intergenic |
| GCCGTTGGATCTAGATTGGA+CGG | 0.562927 | 1_1:+59516782 | None:intergenic |
| CGTGAATCATATACAATGGT+AGG | 0.564534 | 1_1:+59517217 | None:intergenic |
| TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1_1:-59517119 | Msa0032420:CDS |
| GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1_1:-59517745 | Msa0032420:CDS |
| GACTCGGAACAATCAGCTTG+AGG | 0.567833 | 1_1:+59518390 | None:intergenic |
| ATGCACAAATTCTAATGGAA+AGG | 0.570132 | 1_1:-59518541 | Msa0032420:CDS |
| AATTTACGCATTCACGCAGT+CGG | 0.570803 | 1_1:-59516903 | Msa0032420:three_prime_UTR |
| TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1_1:-59517856 | Msa0032420:CDS |
| CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1_1:-59517694 | Msa0032420:CDS |
| AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1_1:-59517598 | Msa0032420:CDS |
| TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1_1:-59518288 | Msa0032420:CDS |
| CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1_1:-59517544 | Msa0032420:CDS |
| CCTCTTCCGCAATGGCCACA+AGG | 0.586239 | 1_1:-59519350 | Msa0032420:intron |
| GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1_1:-59517092 | Msa0032420:CDS |
| GCTGTATAGGAGGTGTGCCT+CGG | 0.592929 | 1_1:-59516624 | Msa0032420:three_prime_UTR |
| AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1_1:+59518124 | None:intergenic |
| AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1_1:+59518495 | None:intergenic |
| ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1_1:-59517903 | Msa0032420:CDS |
| TCCGTCCAATCTAGATCCAA+CGG | 0.595498 | 1_1:-59516783 | Msa0032420:three_prime_UTR |
| TATTGAGCATTACGGGCCAA+CGG | 0.595833 | 1_1:-59517950 | Msa0032420:CDS |
| CTGATGATAGTGTGAATGTG+TGG | 0.596339 | 1_1:-59516749 | Msa0032420:three_prime_UTR |
| CTCATATATTGCAACCAACA+TGG | 0.598495 | 1_1:+59517250 | None:intergenic |
| TGAAGGTAAGTCCCTGCATG+AGG | 0.599871 | 1_1:+59517397 | None:intergenic |
| GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1_1:-59517814 | Msa0032420:CDS |
| GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1_1:-59517243 | Msa0032420:CDS |
| TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1_1:-59517911 | Msa0032420:CDS |
| CTAGCTAGAGGTGTATCTGT+CGG | 0.607900 | 1_1:-59518087 | Msa0032420:CDS |
| TAATGGAATAGGAATGTGCT+TGG | 0.609971 | 1_1:-59516419 | Msa0032420:three_prime_UTR |
| TATCACGGCACAAATTTACC+TGG | 0.610377 | 1_1:-59517820 | Msa0032420:CDS |
| AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1_1:-59517079 | Msa0032420:CDS |
| AGAATACCTTGTGGCCATTG+CGG | 0.613053 | 1_1:+59519344 | None:intergenic |
| TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1_1:-59517432 | Msa0032420:CDS |
| ATGTATAGAAGCTGTATAGG+AGG | 0.614183 | 1_1:-59516634 | Msa0032420:three_prime_UTR |
| CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1_1:-59518273 | Msa0032420:CDS |
| GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1_1:-59517098 | Msa0032420:CDS |
| CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1_1:-59517802 | Msa0032420:CDS |
| TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1_1:+59517934 | None:intergenic |
| GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1_1:+59518257 | None:intergenic |
| CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1_1:+59517380 | None:intergenic |
| GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1_1:-59517835 | Msa0032420:CDS |
| TCTAATGATCAGCCGTTGCG+AGG | 0.619840 | 1_1:-59518447 | Msa0032420:CDS |
| CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1_1:-59517669 | Msa0032420:CDS |
| CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1_1:-59517817 | Msa0032420:CDS |
| CCATCATTATATCCTCCACC+AGG | 0.627153 | 1_1:+59517802 | None:intergenic |
| GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1_1:-59517242 | Msa0032420:CDS |
| CACTATCATCAGCACATCGG+TGG | 0.627838 | 1_1:+59516760 | None:intergenic |
| GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1_1:-59517286 | Msa0032420:CDS |
| GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1_1:-59517728 | Msa0032420:CDS |
| ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1_1:-59517433 | Msa0032420:CDS |
| ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1_1:+59518435 | None:intergenic |
| GAAGGTAAGTCCCTGCATGA+GGG | 0.646553 | 1_1:+59517398 | None:intergenic |
| TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1_1:-59518072 | Msa0032420:CDS |
| TGATGATAGTGTGAATGTGT+GGG | 0.650642 | 1_1:-59516748 | Msa0032420:three_prime_UTR |
| AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1_1:-59517586 | Msa0032420:CDS |
| CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1_1:+59518047 | None:intergenic |
| AGAACGTGAATCATATACAA+TGG | 0.654517 | 1_1:+59517213 | None:intergenic |
| GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1_1:+59518105 | None:intergenic |
| CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1_1:-59517114 | Msa0032420:CDS |
| GCAACGGCTGATCATTAGAG+TGG | 0.659234 | 1_1:+59518451 | None:intergenic |
| ATGCTAGCTACCCTCATGCA+GGG | 0.662714 | 1_1:-59517408 | Msa0032420:CDS |
| GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1_1:-59517264 | Msa0032420:CDS |
| CTATAAGTAACTACTATCCG+AGG | 0.669559 | 1_1:+59516607 | None:intergenic |
| TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1_1:-59517241 | Msa0032420:CDS |
| GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1_1:-59518099 | Msa0032420:CDS |
| GCAGTCGGCAGGCACGTCAG+TGG | 0.703576 | 1_1:-59516888 | Msa0032420:three_prime_UTR |
| TCACACTATCATCAGCACAT+CGG | 0.710871 | 1_1:+59516757 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAAATTTTTTTTGCTAAA+GGG | + | chr1_1:59517011-59517030 | None:intergenic | 15.0% |
| !!! | AAACAAATTTTTTTTGCTAA+AGG | + | chr1_1:59517012-59517031 | None:intergenic | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr1_1:59517059-59517078 | None:intergenic | 15.0% |
| !!! | AAAGTTAAAGTATTTATTGA+GGG | + | chr1_1:59517092-59517111 | None:intergenic | 15.0% |
| !!! | AAAAGTTAAAGTATTTATTG+AGG | + | chr1_1:59517093-59517112 | None:intergenic | 15.0% |
| !! | TAAGATAATATTATTGCTAA+AGG | - | chr1_1:59519493-59519512 | Msa0032420:five_prime_UTR | 15.0% |
| !!! | TTTGAGTTGATGATTAAAAT+TGG | + | chr1_1:59516692-59516711 | None:intergenic | 20.0% |
| !!! | TACTGTTTTCTTTCTATTTT+TGG | - | chr1_1:59516730-59516749 | Msa0032420:three_prime_UTR | 20.0% |
| !!! | GATCTTATTGTCATTAATTT+TGG | - | chr1_1:59516809-59516828 | Msa0032420:three_prime_UTR | 20.0% |
| !!! | GTTTTTATTTTTGCAGATAT+TGG | - | chr1_1:59516840-59516859 | Msa0032420:three_prime_UTR | 20.0% |
| !! | TTCATATTGATGCATTAAAT+AGG | - | chr1_1:59516899-59516918 | Msa0032420:three_prime_UTR | 20.0% |
| !! | AATTAAAGTTGTATTGGAAA+TGG | + | chr1_1:59517053-59517072 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTGTCTTTTTCTT+AGG | - | chr1_1:59517137-59517156 | Msa0032420:CDS | 20.0% |
| !!! | AGTAATTTCTTTTTGGTTAT+TGG | - | chr1_1:59517256-59517275 | Msa0032420:CDS | 20.0% |
| !! | TAAACAAGTTTGAGAAAATT+TGG | - | chr1_1:59517407-59517426 | Msa0032420:CDS | 20.0% |
| !! | CATATTAATGAGTAATTAAG+TGG | + | chr1_1:59517631-59517650 | None:intergenic | 20.0% |
| !! | CACTTAATTACTCATTAATA+TGG | - | chr1_1:59517629-59517648 | Msa0032420:CDS | 20.0% |
| !!! | TGCTAAAAGTAATTTTATTC+TGG | - | chr1_1:59518638-59518657 | Msa0032420:intron | 20.0% |
| !!! | TCCTAATAATGGTATTTTTT+CGG | - | chr1_1:59519025-59519044 | Msa0032420:intron | 20.0% |
| !!! | TATTTTTTCGGATTTTGATT+TGG | - | chr1_1:59519037-59519056 | Msa0032420:intron | 20.0% |
| !!! | TTTTTAACCAACTTAAACAT+TGG | + | chr1_1:59519428-59519447 | None:intergenic | 20.0% |
| !!! | TTCTTTAATTTGTGTGCAAT+TGG | - | chr1_1:59517202-59517221 | Msa0032420:CDS | 25.0% |
| !! | TTTCACATTTTATAGACCTT+TGG | - | chr1_1:59517462-59517481 | Msa0032420:CDS | 25.0% |
| ! | TTACTCATTAATATGGTGTA+TGG | - | chr1_1:59517636-59517655 | Msa0032420:CDS | 25.0% |
| !! | ATGATGAATGTGTTTACTTT+TGG | - | chr1_1:59517665-59517684 | Msa0032420:CDS | 25.0% |
| ! | GTCAAAGAAAAATTATTTCC+AGG | - | chr1_1:59517831-59517850 | Msa0032420:CDS | 25.0% |
| ! | AGAAAAATTATTTCCAGGTT+TGG | - | chr1_1:59517836-59517855 | Msa0032420:CDS | 25.0% |
| ! | TGTCTTGATGAATAAACTAT+TGG | + | chr1_1:59518540-59518559 | None:intergenic | 25.0% |
| ! | ATAGTTTATTCATCAAGACA+TGG | - | chr1_1:59518540-59518559 | Msa0032420:CDS | 25.0% |
| ! | TAGTTTATTCATCAAGACAT+GGG | - | chr1_1:59518541-59518560 | Msa0032420:CDS | 25.0% |
| ! | ACAGAAAACCTAACAAATAT+TGG | + | chr1_1:59518813-59518832 | None:intergenic | 25.0% |
| !!! | AATATTTGTTAGGTTTTCTG+TGG | - | chr1_1:59518812-59518831 | Msa0032420:intron | 25.0% |
| ! | CTGTTGGAAATAATTCAAAA+AGG | + | chr1_1:59518842-59518861 | None:intergenic | 25.0% |
| ! | TCCGAAAAAATACCATTATT+AGG | + | chr1_1:59519029-59519048 | None:intergenic | 25.0% |
| !!! | AGCAAACAGATTTTGATTTT+TGG | - | chr1_1:59519137-59519156 | Msa0032420:intron | 25.0% |
| ! | AAAATTCCAAACTTGATATC+TGG | - | chr1_1:59519167-59519186 | Msa0032420:intron | 25.0% |
| ! | ACACTGAAAACAAAAGAATT+TGG | + | chr1_1:59519270-59519289 | None:intergenic | 25.0% |
| ! | AGAACATGTATATACATTTG+TGG | - | chr1_1:59519462-59519481 | Msa0032420:five_prime_UTR | 25.0% |
| ! | ATATTATTGCTAAAGGTTGA+TGG | - | chr1_1:59519500-59519519 | Msa0032420:five_prime_UTR | 25.0% |
| !! | TATTATTGCTAAAGGTTGAT+GGG | - | chr1_1:59519501-59519520 | Msa0032420:five_prime_UTR | 25.0% |
| AAAACAGAATAAGAGAGAAG+AGG | - | chr1_1:59516443-59516462 | Msa0032420:three_prime_UTR | 30.0% | |
| AAACAGAATAAGAGAGAAGA+GGG | - | chr1_1:59516444-59516463 | Msa0032420:three_prime_UTR | 30.0% | |
| TCTCTCTTCTTTCTAATAAG+AGG | - | chr1_1:59516497-59516516 | Msa0032420:three_prime_UTR | 30.0% | |
| AAGAAGAAAAGAATACCTTG+TGG | + | chr1_1:59516641-59516660 | None:intergenic | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | chr1_1:59517083-59517102 | None:intergenic | 30.0% | |
| ! | GAGAGTGAGTAATTTCTTTT+TGG | - | chr1_1:59517249-59517268 | Msa0032420:CDS | 30.0% |
| !! | TGTAACTTGTATTTTCCCAA+GGG | + | chr1_1:59517383-59517402 | None:intergenic | 30.0% |
| !! | TTGTAACTTGTATTTTCCCA+AGG | + | chr1_1:59517384-59517403 | None:intergenic | 30.0% |
| ATGCACAAATTCTAATGGAA+AGG | - | chr1_1:59517432-59517451 | Msa0032420:CDS | 30.0% | |
| GGTAAAGCTATAGATTATCA+CGG | - | chr1_1:59518138-59518157 | Msa0032420:CDS | 30.0% | |
| ! | ATTATTTCTCGCATCTTCAT+TGG | + | chr1_1:59518220-59518239 | None:intergenic | 30.0% |
| TGCGAGAAATAATCTTAAGA+AGG | - | chr1_1:59518227-59518246 | Msa0032420:CDS | 30.0% | |
| GCGAGAAATAATCTTAAGAA+GGG | - | chr1_1:59518228-59518247 | Msa0032420:CDS | 30.0% | |
| CTTTACTGATATTGCAATGT+GGG | - | chr1_1:59518305-59518324 | Msa0032420:CDS | 30.0% | |
| GTTCATCAATGACACTTTAA+GGG | + | chr1_1:59518358-59518377 | None:intergenic | 30.0% | |
| TGTTCATCAATGACACTTTA+AGG | + | chr1_1:59518359-59518378 | None:intergenic | 30.0% | |
| AACATTGAGATGAACAAGAT+CGG | - | chr1_1:59518375-59518394 | Msa0032420:CDS | 30.0% | |
| !! | ATTCGATTTGGAGTTTATTG+AGG | - | chr1_1:59518506-59518525 | Msa0032420:CDS | 30.0% |
| AGAACGTGAATCATATACAA+TGG | + | chr1_1:59518763-59518782 | None:intergenic | 30.0% | |
| ACATGCTTCCAATATTTGTT+AGG | - | chr1_1:59518802-59518821 | Msa0032420:intron | 30.0% | |
| TCCAATCATTCTTATGGTAA+AGG | - | chr1_1:59518982-59519001 | Msa0032420:intron | 30.0% | |
| TCCTTTACCATAAGAATGAT+TGG | + | chr1_1:59518986-59519005 | None:intergenic | 30.0% | |
| TCATCTTTCTGTCCTAATAA+TGG | - | chr1_1:59519014-59519033 | Msa0032420:intron | 30.0% | |
| ACAAAAGAATTTGGATTGTC+TGG | + | chr1_1:59519261-59519280 | None:intergenic | 30.0% | |
| ! | CTATACATACAGTTGATACA+TGG | + | chr1_1:59519327-59519346 | None:intergenic | 30.0% |
| TGTATGTATAGAAGCTGTAT+AGG | - | chr1_1:59519336-59519355 | Msa0032420:intron | 30.0% | |
| GTAGTTACTTATAGCTTTCT+TGG | - | chr1_1:59519375-59519394 | Msa0032420:CDS | 30.0% | |
| TTCATTCGTATTGCTTGTAA+TGG | - | chr1_1:59519537-59519556 | Msa0032420:five_prime_UTR | 30.0% | |
| ! | TCTAATAAGAGGTTGCTTTG+TGG | - | chr1_1:59516508-59516527 | Msa0032420:three_prime_UTR | 35.0% |
| !! | TTGGTTGTGAGTGTTTTTGT+TGG | - | chr1_1:59516546-59516565 | Msa0032420:three_prime_UTR | 35.0% |
| !! | TGGTTGTGAGTGTTTTTGTT+GGG | - | chr1_1:59516547-59516566 | Msa0032420:three_prime_UTR | 35.0% |
| GATCAGAGTCAAAGAATTCA+GGG | + | chr1_1:59516580-59516599 | None:intergenic | 35.0% | |
| !!! | GACACTCATTTTGAAATGGA+GGG | + | chr1_1:59516989-59517008 | None:intergenic | 35.0% |
| !! | AAGGGACACTCATTTTGAAA+TGG | + | chr1_1:59516993-59517012 | None:intergenic | 35.0% |
| TGGAGATGCACAAATTCTAA+TGG | - | chr1_1:59517427-59517446 | Msa0032420:CDS | 35.0% | |
| !! | AATTCTAATGGAAAGGCACT+AGG | - | chr1_1:59517439-59517458 | Msa0032420:CDS | 35.0% |
| !! | TAAGTGGCTTTTTAAGAGCT+GGG | + | chr1_1:59517615-59517634 | None:intergenic | 35.0% |
| !! | TTAAGTGGCTTTTTAAGAGC+TGG | + | chr1_1:59517616-59517635 | None:intergenic | 35.0% |
| CATCGAACTTCTTCAACTTT+CGG | + | chr1_1:59517754-59517773 | None:intergenic | 35.0% | |
| CTCACAAACTTCTGTTAGAT+CGG | + | chr1_1:59517785-59517804 | None:intergenic | 35.0% | |
| CACTTGTTCAGAATCAAAGT+AGG | + | chr1_1:59517929-59517948 | None:intergenic | 35.0% | |
| CTACTTTGATTCTGAACAAG+TGG | - | chr1_1:59517927-59517946 | Msa0032420:CDS | 35.0% | |
| CATGCTCTTATTGAGCATTA+CGG | - | chr1_1:59518015-59518034 | Msa0032420:CDS | 35.0% | |
| ATGCTCTTATTGAGCATTAC+GGG | - | chr1_1:59518016-59518035 | Msa0032420:CDS | 35.0% | |
| TCAGGATGAAAATATACCGT+TGG | + | chr1_1:59518042-59518061 | None:intergenic | 35.0% | |
| TGAGAAATACATGCCATCAT+CGG | - | chr1_1:59518062-59518081 | Msa0032420:CDS | 35.0% | |
| ! | TGGAGCAATTTTGTATACTG+CGG | - | chr1_1:59518104-59518123 | Msa0032420:CDS | 35.0% |
| !! | GATATAATGATGGTGCGTTT+TGG | - | chr1_1:59518181-59518200 | Msa0032420:CDS | 35.0% |
| GTTCATGTAAAACCAGCATT+AGG | - | chr1_1:59518276-59518295 | Msa0032420:CDS | 35.0% | |
| CCACATTGCAATATCAGTAA+AGG | + | chr1_1:59518307-59518326 | None:intergenic | 35.0% | |
| CCTTTACTGATATTGCAATG+TGG | - | chr1_1:59518304-59518323 | Msa0032420:CDS | 35.0% | |
| ! | ATGGGTTAATGCATTCGATT+TGG | - | chr1_1:59518494-59518513 | Msa0032420:CDS | 35.0% |
| CTCATATATTGCAACCAACA+TGG | + | chr1_1:59518726-59518745 | None:intergenic | 35.0% | |
| GTTGCAATATATGAGAGAGT+GGG | - | chr1_1:59518731-59518750 | Msa0032420:intron | 35.0% | |
| TTGCAATATATGAGAGAGTG+GGG | - | chr1_1:59518732-59518751 | Msa0032420:intron | 35.0% | |
| CGTGAATCATATACAATGGT+AGG | + | chr1_1:59518759-59518778 | None:intergenic | 35.0% | |
| TTATTTCCAACAGAGCTTTC+TGG | - | chr1_1:59518849-59518868 | Msa0032420:intron | 35.0% | |
| GAGAAATGGCTAATAGCATA+TGG | + | chr1_1:59518952-59518971 | None:intergenic | 35.0% | |
| ! | TGATGATAGTGTGAATGTGT+GGG | - | chr1_1:59519225-59519244 | Msa0032420:intron | 35.0% |
| !! | TGTTTTCAGTGTGTCATTGA+TGG | - | chr1_1:59519278-59519297 | Msa0032420:intron | 35.0% |
| ATGTATAGAAGCTGTATAGG+AGG | - | chr1_1:59519339-59519358 | Msa0032420:intron | 35.0% | |
| CTATAAGTAACTACTATCCG+AGG | + | chr1_1:59519369-59519388 | None:intergenic | 35.0% | |
| TGTAGCTCCAATGTTTAAGT+TGG | - | chr1_1:59519418-59519437 | Msa0032420:CDS | 35.0% | |
| ! | CGTATTGCTTGTAATGGAAT+AGG | - | chr1_1:59519543-59519562 | Msa0032420:five_prime_UTR | 35.0% |
| TAATGGAATAGGAATGTGCT+TGG | - | chr1_1:59519554-59519573 | Msa0032420:five_prime_UTR | 35.0% | |
| ! | TAAGAGGTTGCTTTGTGGTT+TGG | - | chr1_1:59516513-59516532 | Msa0032420:three_prime_UTR | 40.0% |
| !! | GTTGCTTTGTGGTTTGGTAA+GGG | - | chr1_1:59516519-59516538 | Msa0032420:three_prime_UTR | 40.0% |
| GGATCAGAGTCAAAGAATTC+AGG | + | chr1_1:59516581-59516600 | None:intergenic | 40.0% | |
| GAAGGAAGAGAAAAAGGAAG+TGG | + | chr1_1:59516602-59516621 | None:intergenic | 40.0% | |
| AGAGGTGAAGGAAGAGAAAA+AGG | + | chr1_1:59516608-59516627 | None:intergenic | 40.0% | |
| !!! | GGACACTCATTTTGAAATGG+AGG | + | chr1_1:59516990-59517009 | None:intergenic | 40.0% |
| AGTTTGTGAGTGATCTACTC+AGG | - | chr1_1:59517331-59517350 | Msa0032420:CDS | 40.0% | |
| ! | AATCCATCTGGAATCTCCAA+AGG | + | chr1_1:59517481-59517500 | None:intergenic | 40.0% |
| !! | AAGTGGCTTTTTAAGAGCTG+GGG | + | chr1_1:59517614-59517633 | None:intergenic | 40.0% |
| ! | TTATAACCCTTTGGAGGGTT+AGG | + | chr1_1:59517694-59517713 | None:intergenic | 40.0% |
| AACTTTCGGTTCATCTGGAT+TGG | + | chr1_1:59517740-59517759 | None:intergenic | 40.0% | |
| TCTTCAACTTTCGGTTCATC+TGG | + | chr1_1:59517745-59517764 | None:intergenic | 40.0% | |
| AAGGTTGTGTATTCCAAACC+TGG | + | chr1_1:59517852-59517871 | None:intergenic | 40.0% | |
| AATACACAACCTTGCGATAG+AGG | - | chr1_1:59517859-59517878 | Msa0032420:CDS | 40.0% | |
| GCATGAATCTGGTTGAGATT+CGG | + | chr1_1:59518000-59518019 | None:intergenic | 40.0% | |
| ! | GCTCAATAAGAGCATGAATC+TGG | + | chr1_1:59518011-59518030 | None:intergenic | 40.0% |
| GATGGCATGTATTTCTCATC+AGG | + | chr1_1:59518060-59518079 | None:intergenic | 40.0% | |
| !!! | GTGTCGTGGTTTTTCAAGAA+TGG | - | chr1_1:59518084-59518103 | Msa0032420:CDS | 40.0% |
| ! | GGAGCAATTTTGTATACTGC+GGG | - | chr1_1:59518105-59518124 | Msa0032420:CDS | 40.0% |
| TATACTGCGGGTAATGCAAA+GGG | - | chr1_1:59518117-59518136 | Msa0032420:CDS | 40.0% | |
| TATCACGGCACAAATTTACC+TGG | - | chr1_1:59518153-59518172 | Msa0032420:CDS | 40.0% | |
| TTTCTCGCATCTTCATTGGT+AGG | + | chr1_1:59518216-59518235 | None:intergenic | 40.0% | |
| CATGTAAAACCAGCATTAGG+AGG | - | chr1_1:59518279-59518298 | Msa0032420:CDS | 40.0% | |
| !!! | TGGGTTTTTTGCCCATTCAA+TGG | - | chr1_1:59518324-59518343 | Msa0032420:CDS | 40.0% |
| ! | AATGACACTTTAAGGGTTGC+AGG | + | chr1_1:59518351-59518370 | None:intergenic | 40.0% |
| AACAAGATCGGTGAACATGT+CGG | - | chr1_1:59518387-59518406 | Msa0032420:CDS | 40.0% | |
| AAAAACAGACCAAAGCTCTC+CGG | + | chr1_1:59518451-59518470 | None:intergenic | 40.0% | |
| !!! | GTTTTTTTCTCTGAGCACAG+TGG | - | chr1_1:59518465-59518484 | Msa0032420:CDS | 40.0% |
| GGATCATCCAAACTTGGAAT+AGG | - | chr1_1:59518600-59518619 | Msa0032420:CDS | 40.0% | |
| GAGTCATTACAGAACCATGT+TGG | - | chr1_1:59518709-59518728 | Msa0032420:intron | 40.0% | |
| GGTTGCAATATATGAGAGAG+TGG | - | chr1_1:59518730-59518749 | Msa0032420:intron | 40.0% | |
| ATTAGCCATTTCTCATGAGC+TGG | - | chr1_1:59518958-59518977 | Msa0032420:intron | 40.0% | |
| GCTGGATCCAATCATTCTTA+TGG | - | chr1_1:59518976-59518995 | Msa0032420:intron | 40.0% | |
| CTGCGTGAATGCGTAAATTT+GGG | + | chr1_1:59519069-59519088 | None:intergenic | 40.0% | |
| ACTGCGTGAATGCGTAAATT+TGG | + | chr1_1:59519070-59519089 | None:intergenic | 40.0% | |
| AATTTACGCATTCACGCAGT+CGG | - | chr1_1:59519070-59519089 | Msa0032420:intron | 40.0% | |
| TCACACTATCATCAGCACAT+CGG | + | chr1_1:59519219-59519238 | None:intergenic | 40.0% | |
| ! | CTGATGATAGTGTGAATGTG+TGG | - | chr1_1:59519224-59519243 | Msa0032420:intron | 40.0% |
| !! | GGTTGCTTTGTGGTTTGGTA+AGG | - | chr1_1:59516518-59516537 | Msa0032420:three_prime_UTR | 45.0% |
| !! | GTGGTTTGGTAAGGGATGTT+TGG | - | chr1_1:59516527-59516546 | Msa0032420:three_prime_UTR | 45.0% |
| AGAATACCTTGTGGCCATTG+CGG | + | chr1_1:59516632-59516651 | None:intergenic | 45.0% | |
| TTGTGAGTGATCTACTCAGG+TGG | - | chr1_1:59517334-59517353 | Msa0032420:CDS | 45.0% | |
| ! | AGACCTTTGGAGATTCCAGA+TGG | - | chr1_1:59517475-59517494 | Msa0032420:CDS | 45.0% |
| CCAAGACAGGAAAATCCATC+TGG | + | chr1_1:59517493-59517512 | None:intergenic | 45.0% | |
| !! | CCAGATGGATTTTCCTGTCT+TGG | - | chr1_1:59517490-59517509 | Msa0032420:CDS | 45.0% |
| ! | CGGCTTTATAACCCTTTGGA+GGG | + | chr1_1:59517699-59517718 | None:intergenic | 45.0% |
| ! | ACGGCTTTATAACCCTTTGG+AGG | + | chr1_1:59517700-59517719 | None:intergenic | 45.0% |
| CCAAAGGGTTATAAAGCCGT+CGG | - | chr1_1:59517700-59517719 | Msa0032420:CDS | 45.0% | |
| ! | TTTCGGTTCATCTGGATTGG+TGG | + | chr1_1:59517737-59517756 | None:intergenic | 45.0% |
| ! | GATAGAGGTATGCTAGCTAG+AGG | - | chr1_1:59517874-59517893 | Msa0032420:CDS | 45.0% |
| ! | CTAGCTAGAGGTGTATCTGT+CGG | - | chr1_1:59517886-59517905 | Msa0032420:CDS | 45.0% |
| TCTGTCGGAACATTCTTCTG+TGG | - | chr1_1:59517901-59517920 | Msa0032420:CDS | 45.0% | |
| TATTGAGCATTACGGGCCAA+CGG | - | chr1_1:59518023-59518042 | Msa0032420:CDS | 45.0% | |
| AAAAACCACGACACCGATGA+TGG | + | chr1_1:59518078-59518097 | None:intergenic | 45.0% | |
| GTATACTGCGGGTAATGCAA+AGG | - | chr1_1:59518116-59518135 | Msa0032420:CDS | 45.0% | |
| CCATCATTATATCCTCCACC+AGG | + | chr1_1:59518174-59518193 | None:intergenic | 45.0% | |
| CCTGGTGGAGGATATAATGA+TGG | - | chr1_1:59518171-59518190 | Msa0032420:CDS | 45.0% | |
| GAAGGGAAACATAGAGAGTG+CGG | - | chr1_1:59518245-59518264 | Msa0032420:CDS | 45.0% | |
| ! | TTTTTCTCTGAGCACAGTGG+AGG | - | chr1_1:59518468-59518487 | Msa0032420:CDS | 45.0% |
| TGAGCACAGTGGAGGTAAAT+GGG | - | chr1_1:59518476-59518495 | Msa0032420:CDS | 45.0% | |
| CAAGTTTGGATGATCCCTGA+AGG | + | chr1_1:59518596-59518615 | None:intergenic | 45.0% | |
| CTTCAGGGATCATCCAAACT+TGG | - | chr1_1:59518594-59518613 | Msa0032420:CDS | 45.0% | |
| GCGAACTCCTATTCCAAGTT+TGG | + | chr1_1:59518610-59518629 | None:intergenic | 45.0% | |
| ATTGTTGCTGCCGAGTATCT+TGG | - | chr1_1:59518681-59518700 | Msa0032420:intron | 45.0% | |
| GACTCCATCACCAAGATACT+CGG | + | chr1_1:59518694-59518713 | None:intergenic | 45.0% | |
| GTCCAAAGGAGAAGGACAAT+TGG | - | chr1_1:59518889-59518908 | Msa0032420:intron | 45.0% | |
| AGCCAATTGTCCTTCTCCTT+TGG | + | chr1_1:59518894-59518913 | None:intergenic | 45.0% | |
| AAGGAGAAGGACAATTGGCT+AGG | - | chr1_1:59518894-59518913 | Msa0032420:intron | 45.0% | |
| TGGATCCAGCTCATGAGAAA+TGG | + | chr1_1:59518966-59518985 | None:intergenic | 45.0% | |
| GACGGACCAGATATCAAGTT+TGG | + | chr1_1:59519176-59519195 | None:intergenic | 45.0% | |
| TCCGTCCAATCTAGATCCAA+CGG | - | chr1_1:59519190-59519209 | Msa0032420:intron | 45.0% | |
| GATACATGGCGACGATATCT+TGG | + | chr1_1:59519313-59519332 | None:intergenic | 45.0% | |
| TTCCTTCACCTCTTCCGCAA+TGG | - | chr1_1:59516615-59516634 | Msa0032420:three_prime_UTR | 50.0% | |
| TGAGTGATCTACTCAGGTGG+CGG | - | chr1_1:59517337-59517356 | Msa0032420:CDS | 50.0% | |
| CCCAAGGGATATTCTTCCAC+CGG | + | chr1_1:59517368-59517387 | None:intergenic | 50.0% | |
| CCGGTGGAAGAATATCCCTT+GGG | - | chr1_1:59517365-59517384 | Msa0032420:CDS | 50.0% | |
| GTGGCAGTAGTAACCAAGAC+AGG | + | chr1_1:59517506-59517525 | None:intergenic | 50.0% | |
| GCAACGGCTGATCATTAGAG+TGG | + | chr1_1:59517525-59517544 | None:intergenic | 50.0% | |
| TCTAATGATCAGCCGTTGCG+AGG | - | chr1_1:59517526-59517545 | Msa0032420:CDS | 50.0% | |
| ACAAGAACGTGTCCTCGCAA+CGG | + | chr1_1:59517541-59517560 | None:intergenic | 50.0% | |
| GACTCGGAACAATCAGCTTG+AGG | + | chr1_1:59517586-59517605 | None:intergenic | 50.0% | |
| AAGAGCTGGGGATTCTGACT+CGG | + | chr1_1:59517602-59517621 | None:intergenic | 50.0% | |
| TTGGTTGCCTAACCCTCCAA+AGG | - | chr1_1:59517684-59517703 | Msa0032420:CDS | 50.0% | |
| TGGTTGCCTAACCCTCCAAA+GGG | - | chr1_1:59517685-59517704 | Msa0032420:CDS | 50.0% | |
| ! | CCGACGGCTTTATAACCCTT+TGG | + | chr1_1:59517703-59517722 | None:intergenic | 50.0% |
| GGTGGTAACTACTATGCCGA+CGG | + | chr1_1:59517719-59517738 | None:intergenic | 50.0% | |
| GCTAGCATACCTCTATCGCA+AGG | + | chr1_1:59517871-59517890 | None:intergenic | 50.0% | |
| CACGGCACAAATTTACCTGG+TGG | - | chr1_1:59518156-59518175 | Msa0032420:CDS | 50.0% | |
| GGCACAAATTTACCTGGTGG+AGG | - | chr1_1:59518159-59518178 | Msa0032420:CDS | 50.0% | |
| GTAAAGGCTCCTCCTAATGC+TGG | + | chr1_1:59518291-59518310 | None:intergenic | 50.0% | |
| GGGTTGCAGGTCCATTGAAT+GGG | + | chr1_1:59518338-59518357 | None:intergenic | 50.0% | |
| AGGGTTGCAGGTCCATTGAA+TGG | + | chr1_1:59518339-59518358 | None:intergenic | 50.0% | |
| TCGGTGAACATGTCGGTGAT+TGG | - | chr1_1:59518394-59518413 | Msa0032420:CDS | 50.0% | |
| CGGTGAACATGTCGGTGATT+GGG | - | chr1_1:59518395-59518414 | Msa0032420:CDS | 50.0% | |
| CTGAGCACAGTGGAGGTAAA+TGG | - | chr1_1:59518475-59518494 | Msa0032420:CDS | 50.0% | |
| ATGCTAGCTACCCTCATGCA+GGG | - | chr1_1:59518565-59518584 | Msa0032420:CDS | 50.0% | |
| GAAGGTAAGTCCCTGCATGA+GGG | + | chr1_1:59518578-59518597 | None:intergenic | 50.0% | |
| TGAAGGTAAGTCCCTGCATG+AGG | + | chr1_1:59518579-59518598 | None:intergenic | 50.0% | |
| TCATGCAGGGACTTACCTTC+AGG | - | chr1_1:59518578-59518597 | Msa0032420:CDS | 50.0% | |
| CATGCAGGGACTTACCTTCA+GGG | - | chr1_1:59518579-59518598 | Msa0032420:CDS | 50.0% | |
| ! | TCCAACAGAGCTTTCTGGTG+AGG | - | chr1_1:59518854-59518873 | Msa0032420:intron | 50.0% |
| TCCTCACCAGAAAGCTCTGT+TGG | + | chr1_1:59518858-59518877 | None:intergenic | 50.0% | |
| ! | AACAGAGCTTTCTGGTGAGG+AGG | - | chr1_1:59518857-59518876 | Msa0032420:intron | 50.0% |
| ! | ACAGAGCTTTCTGGTGAGGA+GGG | - | chr1_1:59518858-59518877 | Msa0032420:intron | 50.0% |
| TCCTTCTCCTTTGGACCAGT+TGG | + | chr1_1:59518885-59518904 | None:intergenic | 50.0% | |
| GCCGTTGGATCTAGATTGGA+CGG | + | chr1_1:59519194-59519213 | None:intergenic | 50.0% | |
| CACTATCATCAGCACATCGG+TGG | + | chr1_1:59519216-59519235 | None:intergenic | 50.0% | |
| !! | TACTCAGGTGGCGGTTTTGC+CGG | - | chr1_1:59517346-59517365 | Msa0032420:CDS | 55.0% |
| GCCGGTGGAAGAATATCCCT+TGG | - | chr1_1:59517364-59517383 | Msa0032420:CDS | 55.0% | |
| GAGGACACGTTCTTGTCGCT+CGG | - | chr1_1:59517545-59517564 | Msa0032420:CDS | 55.0% | |
| AGGACACGTTCTTGTCGCTC+GGG | - | chr1_1:59517546-59517565 | Msa0032420:CDS | 55.0% | |
| !! | ACATGCCATCATCGGTGTCG+TGG | - | chr1_1:59518070-59518089 | Msa0032420:CDS | 55.0% |
| GGTGAAGTTGCTCACGCGAA+GGG | + | chr1_1:59518430-59518449 | None:intergenic | 55.0% | |
| CTTCGCGTGAGCAACTTCAC+CGG | - | chr1_1:59518429-59518448 | Msa0032420:CDS | 55.0% | |
| GCAACTTCACCGGAGAGCTT+TGG | - | chr1_1:59518439-59518458 | Msa0032420:CDS | 55.0% | |
| CATGCTAGCTACCCTCATGC+AGG | - | chr1_1:59518564-59518583 | Msa0032420:CDS | 55.0% | |
| GCTGCCGAGTATCTTGGTGA+TGG | - | chr1_1:59518687-59518706 | Msa0032420:intron | 55.0% | |
| ! | CAGAGCTTTCTGGTGAGGAG+GGG | - | chr1_1:59518859-59518878 | Msa0032420:intron | 55.0% |
| GCCAACTGGTCCAAAGGAGA+AGG | - | chr1_1:59518881-59518900 | Msa0032420:intron | 55.0% | |
| GGTGGCCGTTGGATCTAGAT+TGG | + | chr1_1:59519198-59519217 | None:intergenic | 55.0% | |
| ! | GCTGTATAGGAGGTGTGCCT+CGG | - | chr1_1:59519349-59519368 | Msa0032420:intron | 55.0% |
| GGCCATTGCGGAAGAGGTGA+AGG | + | chr1_1:59516620-59516639 | None:intergenic | 60.0% | |
| CCTTGTGGCCATTGCGGAAG+AGG | + | chr1_1:59516626-59516645 | None:intergenic | 60.0% | |
| CCTCTTCCGCAATGGCCACA+AGG | - | chr1_1:59516623-59516642 | Msa0032420:three_prime_UTR | 60.0% | |
| CGGTGAAGTTGCTCACGCGA+AGG | + | chr1_1:59518431-59518450 | None:intergenic | 60.0% | |
| TACGCATTCACGCAGTCGGC+AGG | - | chr1_1:59519074-59519093 | Msa0032420:intron | 60.0% | |
| GCAGGCACGTCAGTGGTCAT+TGG | - | chr1_1:59519092-59519111 | Msa0032420:intron | 60.0% | |
| ATCAGCACATCGGTGGCCGT+TGG | + | chr1_1:59519209-59519228 | None:intergenic | 60.0% | |
| !! | TCAGGTGGCGGTTTTGCCGG+TGG | - | chr1_1:59517349-59517368 | Msa0032420:CDS | 65.0% |
| TCTGGTGAGGAGGGGCCAAC+TGG | - | chr1_1:59518867-59518886 | Msa0032420:intron | 65.0% | |
| GGAGGGGCCAACTGGTCCAA+AGG | - | chr1_1:59518875-59518894 | Msa0032420:intron | 65.0% | |
| GCAGTCGGCAGGCACGTCAG+TGG | - | chr1_1:59519085-59519104 | Msa0032420:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59516386 | 59519609 | 59516386 | ID=Msa0032420;Name=Msa0032420 |
| chr1_1 | mRNA | 59516386 | 59519609 | 59516386 | ID=Msa0032420-mRNA-1;Parent=Msa0032420;Name=Msa0032420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|1|1|2|677|560 |
| chr1_1 | exon | 59516386 | 59518642 | 59516386 | ID=Msa0032420-mRNA-1:exon:18397;Parent=Msa0032420-mRNA-1 |
| chr1_1 | exon | 59519351 | 59519609 | 59519351 | ID=Msa0032420-mRNA-1:exon:18396;Parent=Msa0032420-mRNA-1 |
| chr1_1 | five_prime_UTR | 59519454 | 59519609 | 59519454 | ID=Msa0032420-mRNA-1:five_prime_utr;Parent=Msa0032420-mRNA-1 |
| chr1_1 | CDS | 59519351 | 59519453 | 59519351 | ID=Msa0032420-mRNA-1:cds;Parent=Msa0032420-mRNA-1 |
| chr1_1 | CDS | 59517063 | 59518642 | 59517063 | ID=Msa0032420-mRNA-1:cds;Parent=Msa0032420-mRNA-1 |
| chr1_1 | three_prime_UTR | 59516386 | 59517062 | 59516386 | ID=Msa0032420-mRNA-1:three_prime_utr;Parent=Msa0032420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
