Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172060 | XP_003590981.1 | 97.679 | 560 | 13 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172060 | sp|Q501D1|Y1490_ARATH | 54.246 | 577 | 242 | 9 | 1 | 560 | 1 | 572 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172060 | G7I6T7 | 97.679 | 560 | 13 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1141 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0172060 | 0.821064 | 4.924699e-53 | -8.615850e-47 |
| Msa0032080 | Msa0172060 | 0.833307 | 5.749189e-56 | -8.615850e-47 |
| Msa0032100 | Msa0172060 | 0.820318 | 7.306537e-53 | -8.615850e-47 |
| Msa0032420 | Msa0172060 | 0.958046 | 6.181691e-116 | -8.615850e-47 |
| Msa0043980 | Msa0172060 | 0.813301 | 2.743796e-51 | -8.615850e-47 |
| Msa0079070 | Msa0172060 | 0.809479 | 1.853815e-50 | -8.615850e-47 |
| Msa0079130 | Msa0172060 | 0.814667 | 1.370851e-51 | -8.615850e-47 |
| Msa0079370 | Msa0172060 | 0.824331 | 8.553313e-54 | -8.615850e-47 |
| Msa0115790 | Msa0172060 | 0.805995 | 1.019952e-49 | -8.615850e-47 |
| Msa0124320 | Msa0172060 | 0.807503 | 4.895812e-50 | -8.615850e-47 |
| Msa0143930 | Msa0172060 | 0.803730 | 3.032204e-49 | -8.615850e-47 |
| Msa0172060 | Msa0172080 | 0.857113 | 2.035613e-62 | -8.615850e-47 |
| Msa0172060 | Msa0200850 | 0.802665 | 5.038106e-49 | -8.615850e-47 |
| Msa0172060 | Msa0218370 | 0.828478 | 8.790731e-55 | -8.615850e-47 |
| Msa0172060 | Msa0236420 | 0.808741 | 2.667854e-50 | -8.615850e-47 |
| Msa0172060 | Msa0270960 | 0.809052 | 2.288803e-50 | -8.615850e-47 |
| Msa0172060 | Msa0388730 | 0.802923 | 4.456134e-49 | -8.615850e-47 |
| Msa0172060 | Msa0455760 | 0.805032 | 1.623306e-49 | -8.615850e-47 |
| Msa0172060 | Msa0604290 | 0.802018 | 6.844225e-49 | -8.615850e-47 |
| Msa0172060 | Msa0624060 | 0.809359 | 1.967947e-50 | -8.615850e-47 |
| Msa0172060 | Msa0645530 | 0.802120 | 6.521508e-49 | -8.615850e-47 |
| Msa0172060 | Msa0676130 | 0.809763 | 1.611316e-50 | -8.615850e-47 |
| Msa0172060 | Msa0676180 | 0.813442 | 2.554808e-51 | -8.615850e-47 |
| Msa0172060 | Msa0685090 | 0.821723 | 3.470184e-53 | -8.615850e-47 |
| Msa0172060 | Msa0756320 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0172060 | Msa1122150 | 0.862491 | 4.880254e-64 | -8.615850e-47 |
| Msa0172060 | Msa1160560 | 0.846107 | 2.673272e-59 | -8.615850e-47 |
| Msa0172060 | Msa1257750 | 0.803511 | 3.366330e-49 | -8.615850e-47 |
| Msa0172060 | Msa1305810 | 0.806120 | 9.595770e-50 | -8.615850e-47 |
| Msa0172060 | Msa1329200 | 0.828157 | 1.051014e-54 | -8.615850e-47 |
| Msa0172060 | Msa1378410 | 0.805163 | 1.524031e-49 | -8.615850e-47 |
| Msa0172060 | Msa1419840 | 0.831156 | 1.958328e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172060 | MtrunA17_Chr1g0190341 | 97.679 | 560 | 13 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1141 |
| Msa0172060 | MtrunA17_Chr1g0190371 | 97.679 | 560 | 13 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1141 |
| Msa0172060 | MtrunA17_Chr5g0395701 | 56.140 | 570 | 233 | 7 | 4 | 558 | 38 | 605 | 0.0 | 663 |
| Msa0172060 | MtrunA17_Chr4g0039581 | 55.536 | 569 | 238 | 8 | 1 | 558 | 3 | 567 | 0.0 | 658 |
| Msa0172060 | MtrunA17_Chr2g0309191 | 46.903 | 565 | 268 | 12 | 6 | 558 | 8 | 552 | 5.74e-174 | 503 |
| Msa0172060 | MtrunA17_Chr2g0310081 | 45.652 | 552 | 263 | 10 | 20 | 558 | 51 | 578 | 1.28e-169 | 493 |
| Msa0172060 | MtrunA17_Chr2g0309181 | 45.833 | 552 | 272 | 10 | 18 | 558 | 50 | 585 | 1.85e-167 | 488 |
| Msa0172060 | MtrunA17_Chr4g0074491 | 44.646 | 551 | 274 | 10 | 23 | 558 | 12 | 546 | 2.01e-160 | 468 |
| Msa0172060 | MtrunA17_Chr2g0309171 | 45.438 | 537 | 264 | 9 | 35 | 558 | 631 | 1151 | 1.86e-152 | 466 |
| Msa0172060 | MtrunA17_Chr2g0309171 | 45.403 | 533 | 261 | 9 | 35 | 554 | 14 | 529 | 1.20e-144 | 446 |
| Msa0172060 | MtrunA17_Chr2g0309131 | 42.435 | 542 | 230 | 8 | 23 | 558 | 20 | 485 | 6.90e-141 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172060 | AT3G04350.1 | 64.336 | 572 | 187 | 7 | 1 | 560 | 1 | 567 | 0.0 | 764 |
| Msa0172060 | AT5G18490.1 | 63.121 | 564 | 188 | 8 | 4 | 560 | 3 | 553 | 0.0 | 736 |
| Msa0172060 | AT3G04350.2 | 64.860 | 535 | 174 | 6 | 35 | 560 | 16 | 545 | 0.0 | 724 |
| Msa0172060 | AT1G04090.1 | 54.246 | 577 | 242 | 9 | 1 | 560 | 1 | 572 | 0.0 | 652 |
| Msa0172060 | AT5G43950.1 | 53.752 | 573 | 241 | 9 | 1 | 558 | 1 | 564 | 0.0 | 635 |
| Msa0172060 | AT2G44260.1 | 45.404 | 544 | 269 | 9 | 23 | 558 | 29 | 552 | 5.35e-167 | 486 |
| Msa0172060 | AT2G44230.1 | 44.973 | 547 | 265 | 10 | 23 | 558 | 20 | 541 | 2.31e-166 | 484 |
| Msa0172060 | AT2G44260.2 | 45.301 | 532 | 263 | 9 | 35 | 558 | 71 | 582 | 6.93e-162 | 474 |
| Msa0172060 | AT3G01870.1 | 40.820 | 561 | 292 | 13 | 15 | 558 | 46 | 583 | 3.21e-138 | 413 |
| Msa0172060 | AT3G01880.1 | 41.103 | 562 | 291 | 14 | 15 | 558 | 50 | 589 | 1.09e-136 | 409 |
Find 185 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1_4:+57002374 | None:intergenic |
| TAAACAAGTTTGAGAAAATT+TGG | 0.134162 | 1_4:-57003323 | Msa0172060:CDS |
| ACTGCGTGAATGCGTAAATT+TGG | 0.163385 | 1_4:+57001664 | None:intergenic |
| ACACTGAAAACAAAAGAATT+TGG | 0.203333 | 1_4:+57001464 | None:intergenic |
| GTAGTTACTTATAGCTTTCT+TGG | 0.219890 | 1_4:-57001356 | Msa0172060:three_prime_UTR |
| CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1_4:-57002255 | Msa0172060:CDS |
| AATCTGAAACAAGTAATTAA+AGG | 0.248766 | 1_4:-57004346 | None:intergenic |
| TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1_4:-57001881 | Msa0172060:CDS |
| CACTTAATTACTCATTAATA+TGG | 0.264581 | 1_4:-57003101 | Msa0172060:CDS |
| AGAGGTGAAGGAAGAGAAAA+AGG | 0.271196 | 1_4:+57004125 | None:intergenic |
| GGATCAGAGTCAAAGAATTC+AGG | 0.279082 | 1_4:+57004152 | None:intergenic |
| ACAAAAGAATTTGGATTGTC+TGG | 0.303145 | 1_4:+57001473 | None:intergenic |
| AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1_4:+57001839 | None:intergenic |
| CGTATTGCTTGTAATGGAAT+AGG | 0.307831 | 1_4:-57001187 | Msa0172060:three_prime_UTR |
| GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1_4:+57002123 | None:intergenic |
| TCCTTTACCATAAGAATGAT+TGG | 0.315404 | 1_4:+57001747 | None:intergenic |
| TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1_4:+57002193 | None:intergenic |
| ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1_4:+57001920 | None:intergenic |
| GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1_4:-57002549 | Msa0172060:CDS |
| CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1_4:+57002979 | None:intergenic |
| TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1_4:+57002988 | None:intergenic |
| ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1_4:-57002236 | Msa0172060:CDS |
| TCTCTCTTCTTTCTAATAAG+AGG | 0.345722 | 1_4:-57004233 | Msa0172060:five_prime_UTR |
| ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1_4:-57003065 | Msa0172060:CDS |
| TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1_4:+57001848 | None:intergenic |
| GACGGACCAGATATCAAGTT+TGG | 0.351841 | 1_4:+57001558 | None:intergenic |
| ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1_4:-57001928 | Msa0172060:CDS |
| CATGCTCTTATTGAGCATTA+CGG | 0.358178 | 1_4:-57002715 | Msa0172060:CDS |
| AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1_4:+57002382 | None:intergenic |
| TTCATTCGTATTGCTTGTAA+TGG | 0.364694 | 1_4:-57001193 | Msa0172060:three_prime_UTR |
| TCATCTTTCTGTCCTAATAA+TGG | 0.365027 | 1_4:-57001716 | Msa0172060:three_prime_UTR |
| TGGAGATGCACAAATTCTAA+TGG | 0.365237 | 1_4:-57003303 | Msa0172060:CDS |
| GCTGGATCCAATCATTCTTA+TGG | 0.369974 | 1_4:-57001754 | Msa0172060:three_prime_UTR |
| ATGCTCTTATTGAGCATTAC+GGG | 0.370883 | 1_4:-57002714 | Msa0172060:CDS |
| TAAGAGGTTGCTTTGTGGTT+TGG | 0.377108 | 1_4:-57004217 | Msa0172060:five_prime_UTR |
| GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1_4:+57002375 | None:intergenic |
| TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1_4:-57001863 | Msa0172060:CDS |
| AAAATTCCAAACTTGATATC+TGG | 0.383640 | 1_4:-57001564 | Msa0172060:three_prime_UTR |
| AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1_4:+57002993 | None:intergenic |
| TTACTCATTAATATGGTGTA+TGG | 0.386638 | 1_4:-57003094 | Msa0172060:CDS |
| CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1_4:+57001891 | None:intergenic |
| CTGCGTGAATGCGTAAATTT+GGG | 0.393049 | 1_4:+57001665 | None:intergenic |
| GTGGTTTGGTAAGGGATGTT+TGG | 0.395720 | 1_4:-57004203 | Msa0172060:exon |
| ATTATTTCTCGCATCTTCAT+TGG | 0.404816 | 1_4:+57002513 | None:intergenic |
| TAAGATAATATTATTGCTAA+AGG | 0.408489 | 1_4:-57001237 | Msa0172060:three_prime_UTR |
| TCATGCAGGGACTTACCTTC+AGG | 0.422603 | 1_4:-57002152 | Msa0172060:CDS |
| CATATTAATGAGTAATTAAG+TGG | 0.423515 | 1_4:+57003102 | None:intergenic |
| AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1_4:+57002394 | None:intergenic |
| GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1_4:-57002454 | Msa0172060:CDS |
| GCTCAATAAGAGCATGAATC+TGG | 0.427486 | 1_4:+57002722 | None:intergenic |
| CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1_4:+57003030 | None:intergenic |
| TGTATGTATAGAAGCTGTAT+AGG | 0.430694 | 1_4:-57001395 | Msa0172060:three_prime_UTR |
| GGTTGCTTTGTGGTTTGGTA+AGG | 0.431847 | 1_4:-57004212 | Msa0172060:five_prime_UTR |
| CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1_4:-57002136 | Msa0172060:CDS |
| CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1_4:-57002335 | Msa0172060:CDS |
| TCCAATCATTCTTATGGTAA+AGG | 0.432784 | 1_4:-57001748 | Msa0172060:three_prime_UTR |
| TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1_4:-57002336 | Msa0172060:CDS |
| GATACATGGCGACGATATCT+TGG | 0.440980 | 1_4:+57001421 | None:intergenic |
| GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1_4:-57002291 | Msa0172060:CDS |
| TCTAATAAGAGGTTGCTTTG+TGG | 0.443374 | 1_4:-57004222 | Msa0172060:five_prime_UTR |
| ATATTATTGCTAAAGGTTGA+TGG | 0.447274 | 1_4:-57001230 | Msa0172060:three_prime_UTR |
| TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1_4:+57003039 | None:intergenic |
| GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1_4:-57002130 | Msa0172060:CDS |
| GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1_4:+57002673 | None:intergenic |
| CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1_4:+57003365 | None:intergenic |
| TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1_4:+57001875 | None:intergenic |
| AGAACATGTATATACATTTG+TGG | 0.463778 | 1_4:-57001268 | Msa0172060:three_prime_UTR |
| ATTAGCCATTTCTCATGAGC+TGG | 0.464452 | 1_4:-57001772 | Msa0172060:three_prime_UTR |
| TATTATTGCTAAAGGTTGAT+GGG | 0.466225 | 1_4:-57001229 | Msa0172060:three_prime_UTR |
| GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1_4:+57002733 | None:intergenic |
| AATACACAACCTTGCGATAG+AGG | 0.468770 | 1_4:-57002871 | Msa0172060:CDS |
| CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1_4:+57003240 | None:intergenic |
| AAACAGAATAAGAGAGAAGA+GGG | 0.469330 | 1_4:-57004282 | Msa0172060:five_prime_UTR |
| GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1_4:-57003185 | Msa0172060:CDS |
| TGGATCCAGCTCATGAGAAA+TGG | 0.475127 | 1_4:+57001767 | None:intergenic |
| TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1_4:-57002254 | Msa0172060:CDS |
| CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1_4:-57002425 | Msa0172060:CDS |
| ATTCGATTTGGAGTTTATTG+AGG | 0.477400 | 1_4:-57002224 | Msa0172060:CDS |
| GAGAAATGGCTAATAGCATA+TGG | 0.480178 | 1_4:+57001781 | None:intergenic |
| TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1_4:-57002503 | Msa0172060:CDS |
| GCAGGCACGTCAGTGGTCAT+TGG | 0.482146 | 1_4:-57001639 | Msa0172060:three_prime_UTR |
| ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1_4:+57003033 | None:intergenic |
| GTAGCTCCAAATGTTTAAGT+TGG | 0.487591 | 1_4:-57001312 | Msa0172060:three_prime_UTR |
| TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1_4:+57002996 | None:intergenic |
| ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1_4:-57002049 | Msa0172060:CDS |
| GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1_4:-57001841 | Msa0172060:CDS |
| CTCACAAACTTCTGTTAGAT+CGG | 0.493970 | 1_4:+57002948 | None:intergenic |
| GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1_4:+57002395 | None:intergenic |
| GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1_4:-57003366 | Msa0172060:CDS |
| CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1_4:-57002803 | Msa0172060:CDS |
| GATCAGAGTCAAAGAATTCA+GGG | 0.505738 | 1_4:+57004153 | None:intergenic |
| CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1_4:+57002302 | None:intergenic |
| TACGCATTCACGCAGTCGGC+AGG | 0.512700 | 1_4:-57001657 | Msa0172060:three_prime_UTR |
| CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1_4:+57004107 | None:intergenic |
| CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1_4:+57002426 | None:intergenic |
| CATGCTAGCTACCCTCATGC+AGG | 0.516116 | 1_4:-57002166 | Msa0172060:CDS |
| GGTGGCCGTTGGATCTAGAT+TGG | 0.518329 | 1_4:+57001536 | None:intergenic |
| TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1_4:-57003046 | Msa0172060:CDS |
| GTTGCTTTGTGGTTTGGTAA+GGG | 0.528648 | 1_4:-57004211 | Msa0172060:five_prime_UTR |
| AATTCTAATGGAAAGGCACT+AGG | 0.529623 | 1_4:-57003291 | Msa0172060:CDS |
| CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1_4:-57002151 | Msa0172060:CDS |
| TTTCTCGCATCTTCATTGGT+AGG | 0.535231 | 1_4:+57002517 | None:intergenic |
| AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1_4:-57001873 | Msa0172060:CDS |
| GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1_4:-57002614 | Msa0172060:CDS |
| ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1_4:-57001872 | Msa0172060:CDS |
| GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1_4:+57002442 | None:intergenic |
| CTATACATACAGTTGATACA+TGG | 0.547754 | 1_4:+57001407 | None:intergenic |
| AAGAGCTGGGGATTCTGACT+CGG | 0.549133 | 1_4:+57003131 | None:intergenic |
| AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1_4:-57003184 | Msa0172060:CDS |
| CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1_4:-57003365 | Msa0172060:CDS |
| ATCAGCACATCGGTGGCCGT+TGG | 0.551235 | 1_4:+57001525 | None:intergenic |
| AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1_4:-57003255 | Msa0172060:CDS |
| TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1_4:-57004115 | Msa0172060:CDS |
| AAAACAGAATAAGAGAGAAG+AGG | 0.552501 | 1_4:-57004283 | Msa0172060:five_prime_UTR |
| GTGGCAGTAGTAACCAAGAC+AGG | 0.553725 | 1_4:+57003227 | None:intergenic |
| AGAATACCTTGTGGCCATTG+TGG | 0.555371 | 1_4:+57004101 | None:intergenic |
| GACTCCATCACCAAGATACT+CGG | 0.556847 | 1_4:+57002039 | None:intergenic |
| CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1_4:+57003034 | None:intergenic |
| GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1_4:+57002303 | None:intergenic |
| GCCGTTGGATCTAGATTGGA+CGG | 0.562927 | 1_4:+57001540 | None:intergenic |
| CGTGAATCATATACAATGGT+AGG | 0.564534 | 1_4:+57001974 | None:intergenic |
| TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1_4:-57001876 | Msa0172060:CDS |
| GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1_4:-57002502 | Msa0172060:CDS |
| GACTCGGAACAATCAGCTTG+AGG | 0.567833 | 1_4:+57003147 | None:intergenic |
| ATGCACAAATTCTAATGGAA+AGG | 0.570132 | 1_4:-57003298 | Msa0172060:CDS |
| AATTTACGCATTCACGCAGT+CGG | 0.570803 | 1_4:-57001661 | Msa0172060:three_prime_UTR |
| TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1_4:-57002613 | Msa0172060:CDS |
| CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1_4:-57002451 | Msa0172060:CDS |
| AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1_4:-57002355 | Msa0172060:CDS |
| TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1_4:-57003045 | Msa0172060:CDS |
| CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1_4:-57002301 | Msa0172060:CDS |
| GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1_4:-57001849 | Msa0172060:CDS |
| GCTGTATAGGAGGTGTGCCT+CGG | 0.592929 | 1_4:-57001382 | Msa0172060:three_prime_UTR |
| AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1_4:+57002881 | None:intergenic |
| AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1_4:+57003252 | None:intergenic |
| ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1_4:-57002660 | Msa0172060:CDS |
| TCCGTCCAATCTAGATCCAA+CGG | 0.595498 | 1_4:-57001541 | Msa0172060:three_prime_UTR |
| TATTGAGCATTACGGGCCAA+CGG | 0.595833 | 1_4:-57002707 | Msa0172060:CDS |
| CTGATGATAGTGTGAATGTG+TGG | 0.596339 | 1_4:-57001507 | Msa0172060:three_prime_UTR |
| CTCATATATTGCAACCAACA+TGG | 0.598495 | 1_4:+57002007 | None:intergenic |
| TGAAGGTAAGTCCCTGCATG+AGG | 0.599871 | 1_4:+57002154 | None:intergenic |
| CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1_4:-57004107 | Msa0172060:intron |
| GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1_4:-57002571 | Msa0172060:CDS |
| GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1_4:-57002000 | Msa0172060:CDS |
| TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1_4:-57002668 | Msa0172060:CDS |
| CTAGCTAGAGGTGTATCTGT+CGG | 0.607900 | 1_4:-57002844 | Msa0172060:CDS |
| TAATGGAATAGGAATGTGCT+TGG | 0.609971 | 1_4:-57001176 | Msa0172060:three_prime_UTR |
| TATCACGGCACAAATTTACC+TGG | 0.610377 | 1_4:-57002577 | Msa0172060:CDS |
| AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1_4:-57001836 | Msa0172060:CDS |
| TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1_4:-57002189 | Msa0172060:CDS |
| ATGTATAGAAGCTGTATAGG+AGG | 0.614183 | 1_4:-57001392 | Msa0172060:three_prime_UTR |
| CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1_4:-57003030 | Msa0172060:CDS |
| GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1_4:-57001855 | Msa0172060:CDS |
| CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1_4:-57002559 | Msa0172060:CDS |
| TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1_4:+57002691 | None:intergenic |
| GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1_4:+57003014 | None:intergenic |
| CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1_4:+57002137 | None:intergenic |
| GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1_4:-57002592 | Msa0172060:CDS |
| TCTAATGATCAGCCGTTGCG+AGG | 0.619840 | 1_4:-57003204 | Msa0172060:CDS |
| CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1_4:-57002426 | Msa0172060:CDS |
| CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1_4:-57002574 | Msa0172060:CDS |
| CCATCATTATATCCTCCACC+AGG | 0.627153 | 1_4:+57002559 | None:intergenic |
| GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1_4:-57001999 | Msa0172060:CDS |
| CACTATCATCAGCACATCGG+TGG | 0.627838 | 1_4:+57001518 | None:intergenic |
| GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1_4:+57004113 | None:intergenic |
| GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1_4:-57002043 | Msa0172060:CDS |
| GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1_4:-57002485 | Msa0172060:CDS |
| ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1_4:-57002190 | Msa0172060:CDS |
| ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1_4:+57003192 | None:intergenic |
| GAAGGTAAGTCCCTGCATGA+GGG | 0.646553 | 1_4:+57002155 | None:intergenic |
| TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1_4:-57002829 | Msa0172060:CDS |
| TGATGATAGTGTGAATGTGT+GGG | 0.650642 | 1_4:-57001506 | Msa0172060:three_prime_UTR |
| AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1_4:-57002343 | Msa0172060:CDS |
| CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1_4:+57002804 | None:intergenic |
| AGAACGTGAATCATATACAA+TGG | 0.654517 | 1_4:+57001970 | None:intergenic |
| GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1_4:+57002862 | None:intergenic |
| CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1_4:-57001871 | Msa0172060:CDS |
| GCAACGGCTGATCATTAGAG+TGG | 0.659234 | 1_4:+57003208 | None:intergenic |
| ATGCTAGCTACCCTCATGCA+GGG | 0.662714 | 1_4:-57002165 | Msa0172060:CDS |
| GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1_4:-57002021 | Msa0172060:CDS |
| CTATAAGTAACTACTATCCG+AGG | 0.669559 | 1_4:+57001365 | None:intergenic |
| TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1_4:-57001998 | Msa0172060:CDS |
| GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1_4:-57002856 | Msa0172060:CDS |
| GCAGTCGGCAGGCACGTCAG+TGG | 0.703576 | 1_4:-57001646 | Msa0172060:three_prime_UTR |
| TCACACTATCATCAGCACAT+CGG | 0.710871 | 1_4:+57001515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAAATTTTTTTTGCTAAA+GGG | + | chr1_4:57001765-57001784 | None:intergenic | 15.0% |
| !!! | AAACAAATTTTTTTTGCTAA+AGG | + | chr1_4:57001766-57001785 | None:intergenic | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr1_4:57001813-57001832 | None:intergenic | 15.0% |
| !!! | AAAGTTAAAGTATTTATTGA+GGG | + | chr1_4:57001846-57001865 | None:intergenic | 15.0% |
| !!! | AAAAGTTAAAGTATTTATTG+AGG | + | chr1_4:57001847-57001866 | None:intergenic | 15.0% |
| !! | TAAGATAATATTATTGCTAA+AGG | - | chr1_4:57004247-57004266 | Msa0172060:five_prime_UTR | 15.0% |
| !!! | TTTGAGTTGATGATTAAAAT+TGG | + | chr1_4:57001446-57001465 | None:intergenic | 20.0% |
| !!! | TACTGTTTTCTTTCTATTTT+TGG | - | chr1_4:57001484-57001503 | Msa0172060:three_prime_UTR | 20.0% |
| !!! | GATCTTATTGTCATTAATTT+TGG | - | chr1_4:57001563-57001582 | Msa0172060:three_prime_UTR | 20.0% |
| !!! | GTTTTTATTTTTGCAGATAT+TGG | - | chr1_4:57001594-57001613 | Msa0172060:three_prime_UTR | 20.0% |
| !! | TTCATATTGATGCATTAAAT+AGG | - | chr1_4:57001653-57001672 | Msa0172060:three_prime_UTR | 20.0% |
| !! | AATTAAAGTTGTATTGGAAA+TGG | + | chr1_4:57001807-57001826 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTGTCTTTTTCTT+AGG | - | chr1_4:57001891-57001910 | Msa0172060:CDS | 20.0% |
| !!! | AGTAATTTCTTTTTGGTTAT+TGG | - | chr1_4:57002010-57002029 | Msa0172060:CDS | 20.0% |
| !! | TAAACAAGTTTGAGAAAATT+TGG | - | chr1_4:57002161-57002180 | Msa0172060:CDS | 20.0% |
| !! | CATATTAATGAGTAATTAAG+TGG | + | chr1_4:57002385-57002404 | None:intergenic | 20.0% |
| !! | CACTTAATTACTCATTAATA+TGG | - | chr1_4:57002383-57002402 | Msa0172060:CDS | 20.0% |
| !!! | TGCTAAAAGTAATTTTATTC+TGG | - | chr1_4:57003392-57003411 | Msa0172060:intron | 20.0% |
| !!! | TCCTAATAATGGTATTTTTT+CGG | - | chr1_4:57003779-57003798 | Msa0172060:intron | 20.0% |
| !!! | TTTTAACCAACTTAAACATT+TGG | + | chr1_4:57004181-57004200 | None:intergenic | 20.0% |
| !!! | TTCTTTAATTTGTGTGCAAT+TGG | - | chr1_4:57001956-57001975 | Msa0172060:CDS | 25.0% |
| !! | TTTCACATTTTATAGACCTT+TGG | - | chr1_4:57002216-57002235 | Msa0172060:CDS | 25.0% |
| ! | TTACTCATTAATATGGTGTA+TGG | - | chr1_4:57002390-57002409 | Msa0172060:CDS | 25.0% |
| !! | ATGATGAATGTGTTTACTTT+TGG | - | chr1_4:57002419-57002438 | Msa0172060:CDS | 25.0% |
| ! | GTCAAAGAAAAATTATTTCC+AGG | - | chr1_4:57002585-57002604 | Msa0172060:CDS | 25.0% |
| ! | AGAAAAATTATTTCCAGGTT+TGG | - | chr1_4:57002590-57002609 | Msa0172060:CDS | 25.0% |
| ! | TGTCTTGATGAATAAACTAT+TGG | + | chr1_4:57003294-57003313 | None:intergenic | 25.0% |
| ! | ATAGTTTATTCATCAAGACA+TGG | - | chr1_4:57003294-57003313 | Msa0172060:CDS | 25.0% |
| ! | TAGTTTATTCATCAAGACAT+GGG | - | chr1_4:57003295-57003314 | Msa0172060:CDS | 25.0% |
| ! | ACAGAAAACCTAACAAATAT+TGG | + | chr1_4:57003567-57003586 | None:intergenic | 25.0% |
| !!! | AATATTTGTTAGGTTTTCTG+TGG | - | chr1_4:57003566-57003585 | Msa0172060:intron | 25.0% |
| ! | CTGTTGGAAATAATTCAAAA+AGG | + | chr1_4:57003596-57003615 | None:intergenic | 25.0% |
| ! | TCCGAAAAAATACCATTATT+AGG | + | chr1_4:57003783-57003802 | None:intergenic | 25.0% |
| !!! | GTATTTTTTCGGATTTGATT+TGG | - | chr1_4:57003790-57003809 | Msa0172060:intron | 25.0% |
| !!! | AGCAAACAGATTTTGATTTT+TGG | - | chr1_4:57003890-57003909 | Msa0172060:intron | 25.0% |
| ! | AAAATTCCAAACTTGATATC+TGG | - | chr1_4:57003920-57003939 | Msa0172060:intron | 25.0% |
| ! | ACACTGAAAACAAAAGAATT+TGG | + | chr1_4:57004023-57004042 | None:intergenic | 25.0% |
| ! | AGAACATGTATATACATTTG+TGG | - | chr1_4:57004216-57004235 | Msa0172060:five_prime_UTR | 25.0% |
| ! | ATATTATTGCTAAAGGTTGA+TGG | - | chr1_4:57004254-57004273 | Msa0172060:five_prime_UTR | 25.0% |
| !! | TATTATTGCTAAAGGTTGAT+GGG | - | chr1_4:57004255-57004274 | Msa0172060:five_prime_UTR | 25.0% |
| AAAACAGAATAAGAGAGAAG+AGG | - | chr1_4:57001201-57001220 | Msa0172060:three_prime_UTR | 30.0% | |
| AAACAGAATAAGAGAGAAGA+GGG | - | chr1_4:57001202-57001221 | Msa0172060:three_prime_UTR | 30.0% | |
| TCTCTCTTCTTTCTAATAAG+AGG | - | chr1_4:57001251-57001270 | Msa0172060:three_prime_UTR | 30.0% | |
| AAGAAGAAAAGAATACCTTG+TGG | + | chr1_4:57001395-57001414 | None:intergenic | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | chr1_4:57001837-57001856 | None:intergenic | 30.0% | |
| ! | GAGAGTGAGTAATTTCTTTT+TGG | - | chr1_4:57002003-57002022 | Msa0172060:CDS | 30.0% |
| !! | TGTAACTTGTATTTTCCCAA+GGG | + | chr1_4:57002137-57002156 | None:intergenic | 30.0% |
| !! | TTGTAACTTGTATTTTCCCA+AGG | + | chr1_4:57002138-57002157 | None:intergenic | 30.0% |
| ATGCACAAATTCTAATGGAA+AGG | - | chr1_4:57002186-57002205 | Msa0172060:CDS | 30.0% | |
| GGTAAAGCTATAGATTATCA+CGG | - | chr1_4:57002892-57002911 | Msa0172060:CDS | 30.0% | |
| ! | ATTATTTCTCGCATCTTCAT+TGG | + | chr1_4:57002974-57002993 | None:intergenic | 30.0% |
| TGCGAGAAATAATCTTAAGA+AGG | - | chr1_4:57002981-57003000 | Msa0172060:CDS | 30.0% | |
| GCGAGAAATAATCTTAAGAA+GGG | - | chr1_4:57002982-57003001 | Msa0172060:CDS | 30.0% | |
| CTTTACTGATATTGCAATGT+GGG | - | chr1_4:57003059-57003078 | Msa0172060:CDS | 30.0% | |
| GTTCATCAATGACACTTTAA+GGG | + | chr1_4:57003112-57003131 | None:intergenic | 30.0% | |
| TGTTCATCAATGACACTTTA+AGG | + | chr1_4:57003113-57003132 | None:intergenic | 30.0% | |
| AACATTGAGATGAACAAGAT+CGG | - | chr1_4:57003129-57003148 | Msa0172060:CDS | 30.0% | |
| !! | ATTCGATTTGGAGTTTATTG+AGG | - | chr1_4:57003260-57003279 | Msa0172060:CDS | 30.0% |
| AGAACGTGAATCATATACAA+TGG | + | chr1_4:57003517-57003536 | None:intergenic | 30.0% | |
| ACATGCTTCCAATATTTGTT+AGG | - | chr1_4:57003556-57003575 | Msa0172060:intron | 30.0% | |
| TCCAATCATTCTTATGGTAA+AGG | - | chr1_4:57003736-57003755 | Msa0172060:intron | 30.0% | |
| TCCTTTACCATAAGAATGAT+TGG | + | chr1_4:57003740-57003759 | None:intergenic | 30.0% | |
| TCATCTTTCTGTCCTAATAA+TGG | - | chr1_4:57003768-57003787 | Msa0172060:intron | 30.0% | |
| ACAAAAGAATTTGGATTGTC+TGG | + | chr1_4:57004014-57004033 | None:intergenic | 30.0% | |
| ! | CTATACATACAGTTGATACA+TGG | + | chr1_4:57004080-57004099 | None:intergenic | 30.0% |
| TGTATGTATAGAAGCTGTAT+AGG | - | chr1_4:57004089-57004108 | Msa0172060:intron | 30.0% | |
| GTAGTTACTTATAGCTTTCT+TGG | - | chr1_4:57004128-57004147 | Msa0172060:CDS | 30.0% | |
| TTCATTCGTATTGCTTGTAA+TGG | - | chr1_4:57004291-57004310 | Msa0172060:five_prime_UTR | 30.0% | |
| ! | TCTAATAAGAGGTTGCTTTG+TGG | - | chr1_4:57001262-57001281 | Msa0172060:three_prime_UTR | 35.0% |
| !! | TTGGTTGTGAGTGTTTTTGT+TGG | - | chr1_4:57001300-57001319 | Msa0172060:three_prime_UTR | 35.0% |
| !! | TGGTTGTGAGTGTTTTTGTT+GGG | - | chr1_4:57001301-57001320 | Msa0172060:three_prime_UTR | 35.0% |
| GATCAGAGTCAAAGAATTCA+GGG | + | chr1_4:57001334-57001353 | None:intergenic | 35.0% | |
| !!! | GACACTCATTTTGAAATGGA+GGG | + | chr1_4:57001743-57001762 | None:intergenic | 35.0% |
| !! | AAGGGACACTCATTTTGAAA+TGG | + | chr1_4:57001747-57001766 | None:intergenic | 35.0% |
| TGGAGATGCACAAATTCTAA+TGG | - | chr1_4:57002181-57002200 | Msa0172060:CDS | 35.0% | |
| !! | AATTCTAATGGAAAGGCACT+AGG | - | chr1_4:57002193-57002212 | Msa0172060:CDS | 35.0% |
| !! | TAAGTGGCTTTTTAAGAGCT+GGG | + | chr1_4:57002369-57002388 | None:intergenic | 35.0% |
| !! | TTAAGTGGCTTTTTAAGAGC+TGG | + | chr1_4:57002370-57002389 | None:intergenic | 35.0% |
| CATCGAACTTCTTCAACTTT+CGG | + | chr1_4:57002508-57002527 | None:intergenic | 35.0% | |
| CTCACAAACTTCTGTTAGAT+CGG | + | chr1_4:57002539-57002558 | None:intergenic | 35.0% | |
| CACTTGTTCAGAATCAAAGT+AGG | + | chr1_4:57002683-57002702 | None:intergenic | 35.0% | |
| CTACTTTGATTCTGAACAAG+TGG | - | chr1_4:57002681-57002700 | Msa0172060:CDS | 35.0% | |
| CATGCTCTTATTGAGCATTA+CGG | - | chr1_4:57002769-57002788 | Msa0172060:CDS | 35.0% | |
| ATGCTCTTATTGAGCATTAC+GGG | - | chr1_4:57002770-57002789 | Msa0172060:CDS | 35.0% | |
| TCAGGATGAAAATATACCGT+TGG | + | chr1_4:57002796-57002815 | None:intergenic | 35.0% | |
| TGAGAAATACATGCCATCAT+CGG | - | chr1_4:57002816-57002835 | Msa0172060:CDS | 35.0% | |
| ! | TGGAGCAATTTTGTATACTG+CGG | - | chr1_4:57002858-57002877 | Msa0172060:CDS | 35.0% |
| !! | GATATAATGATGGTGCGTTT+TGG | - | chr1_4:57002935-57002954 | Msa0172060:CDS | 35.0% |
| GTTCATGTAAAACCAGCATT+AGG | - | chr1_4:57003030-57003049 | Msa0172060:CDS | 35.0% | |
| CCACATTGCAATATCAGTAA+AGG | + | chr1_4:57003061-57003080 | None:intergenic | 35.0% | |
| CCTTTACTGATATTGCAATG+TGG | - | chr1_4:57003058-57003077 | Msa0172060:CDS | 35.0% | |
| ! | ATGGGTTAATGCATTCGATT+TGG | - | chr1_4:57003248-57003267 | Msa0172060:CDS | 35.0% |
| CTCATATATTGCAACCAACA+TGG | + | chr1_4:57003480-57003499 | None:intergenic | 35.0% | |
| GTTGCAATATATGAGAGAGT+GGG | - | chr1_4:57003485-57003504 | Msa0172060:intron | 35.0% | |
| TTGCAATATATGAGAGAGTG+GGG | - | chr1_4:57003486-57003505 | Msa0172060:intron | 35.0% | |
| CGTGAATCATATACAATGGT+AGG | + | chr1_4:57003513-57003532 | None:intergenic | 35.0% | |
| TTATTTCCAACAGAGCTTTC+TGG | - | chr1_4:57003603-57003622 | Msa0172060:intron | 35.0% | |
| GAGAAATGGCTAATAGCATA+TGG | + | chr1_4:57003706-57003725 | None:intergenic | 35.0% | |
| ! | TGATGATAGTGTGAATGTGT+GGG | - | chr1_4:57003978-57003997 | Msa0172060:intron | 35.0% |
| !! | TGTTTTCAGTGTGTCATTGA+TGG | - | chr1_4:57004031-57004050 | Msa0172060:intron | 35.0% |
| ATGTATAGAAGCTGTATAGG+AGG | - | chr1_4:57004092-57004111 | Msa0172060:intron | 35.0% | |
| CTATAAGTAACTACTATCCG+AGG | + | chr1_4:57004122-57004141 | None:intergenic | 35.0% | |
| GTAGCTCCAAATGTTTAAGT+TGG | - | chr1_4:57004172-57004191 | Msa0172060:CDS | 35.0% | |
| ! | CGTATTGCTTGTAATGGAAT+AGG | - | chr1_4:57004297-57004316 | Msa0172060:five_prime_UTR | 35.0% |
| TAATGGAATAGGAATGTGCT+TGG | - | chr1_4:57004308-57004327 | Msa0172060:five_prime_UTR | 35.0% | |
| ! | TAAGAGGTTGCTTTGTGGTT+TGG | - | chr1_4:57001267-57001286 | Msa0172060:three_prime_UTR | 40.0% |
| !! | GTTGCTTTGTGGTTTGGTAA+GGG | - | chr1_4:57001273-57001292 | Msa0172060:three_prime_UTR | 40.0% |
| GGATCAGAGTCAAAGAATTC+AGG | + | chr1_4:57001335-57001354 | None:intergenic | 40.0% | |
| GAAGGAAGAGAAAAAGGAAG+TGG | + | chr1_4:57001356-57001375 | None:intergenic | 40.0% | |
| AGAGGTGAAGGAAGAGAAAA+AGG | + | chr1_4:57001362-57001381 | None:intergenic | 40.0% | |
| !!! | GGACACTCATTTTGAAATGG+AGG | + | chr1_4:57001744-57001763 | None:intergenic | 40.0% |
| AGTTTGTGAGTGATCTACTC+AGG | - | chr1_4:57002085-57002104 | Msa0172060:CDS | 40.0% | |
| ! | AATCCATCTGGAATCTCCAA+AGG | + | chr1_4:57002235-57002254 | None:intergenic | 40.0% |
| !! | AAGTGGCTTTTTAAGAGCTG+GGG | + | chr1_4:57002368-57002387 | None:intergenic | 40.0% |
| ! | TTATAACCCTTTGGAGGGTT+AGG | + | chr1_4:57002448-57002467 | None:intergenic | 40.0% |
| AACTTTCGGTTCATCTGGAT+TGG | + | chr1_4:57002494-57002513 | None:intergenic | 40.0% | |
| TCTTCAACTTTCGGTTCATC+TGG | + | chr1_4:57002499-57002518 | None:intergenic | 40.0% | |
| AAGGTTGTGTATTCCAAACC+TGG | + | chr1_4:57002606-57002625 | None:intergenic | 40.0% | |
| AATACACAACCTTGCGATAG+AGG | - | chr1_4:57002613-57002632 | Msa0172060:CDS | 40.0% | |
| GCATGAATCTGGTTGAGATT+CGG | + | chr1_4:57002754-57002773 | None:intergenic | 40.0% | |
| ! | GCTCAATAAGAGCATGAATC+TGG | + | chr1_4:57002765-57002784 | None:intergenic | 40.0% |
| GATGGCATGTATTTCTCATC+AGG | + | chr1_4:57002814-57002833 | None:intergenic | 40.0% | |
| !!! | GTGTCGTGGTTTTTCAAGAA+TGG | - | chr1_4:57002838-57002857 | Msa0172060:CDS | 40.0% |
| ! | GGAGCAATTTTGTATACTGC+GGG | - | chr1_4:57002859-57002878 | Msa0172060:CDS | 40.0% |
| TATACTGCGGGTAATGCAAA+GGG | - | chr1_4:57002871-57002890 | Msa0172060:CDS | 40.0% | |
| TATCACGGCACAAATTTACC+TGG | - | chr1_4:57002907-57002926 | Msa0172060:CDS | 40.0% | |
| TTTCTCGCATCTTCATTGGT+AGG | + | chr1_4:57002970-57002989 | None:intergenic | 40.0% | |
| CATGTAAAACCAGCATTAGG+AGG | - | chr1_4:57003033-57003052 | Msa0172060:CDS | 40.0% | |
| !!! | TGGGTTTTTTGCCCATTCAA+TGG | - | chr1_4:57003078-57003097 | Msa0172060:CDS | 40.0% |
| ! | AATGACACTTTAAGGGTTGC+AGG | + | chr1_4:57003105-57003124 | None:intergenic | 40.0% |
| AACAAGATCGGTGAACATGT+CGG | - | chr1_4:57003141-57003160 | Msa0172060:CDS | 40.0% | |
| AAAAACAGACCAAAGCTCTC+CGG | + | chr1_4:57003205-57003224 | None:intergenic | 40.0% | |
| !!! | GTTTTTTTCTCTGAGCACAG+TGG | - | chr1_4:57003219-57003238 | Msa0172060:CDS | 40.0% |
| GGATCATCCAAACTTGGAAT+AGG | - | chr1_4:57003354-57003373 | Msa0172060:CDS | 40.0% | |
| GAGTCATTACAGAACCATGT+TGG | - | chr1_4:57003463-57003482 | Msa0172060:intron | 40.0% | |
| GGTTGCAATATATGAGAGAG+TGG | - | chr1_4:57003484-57003503 | Msa0172060:intron | 40.0% | |
| ATTAGCCATTTCTCATGAGC+TGG | - | chr1_4:57003712-57003731 | Msa0172060:intron | 40.0% | |
| GCTGGATCCAATCATTCTTA+TGG | - | chr1_4:57003730-57003749 | Msa0172060:intron | 40.0% | |
| CTGCGTGAATGCGTAAATTT+GGG | + | chr1_4:57003822-57003841 | None:intergenic | 40.0% | |
| ACTGCGTGAATGCGTAAATT+TGG | + | chr1_4:57003823-57003842 | None:intergenic | 40.0% | |
| AATTTACGCATTCACGCAGT+CGG | - | chr1_4:57003823-57003842 | Msa0172060:intron | 40.0% | |
| TCACACTATCATCAGCACAT+CGG | + | chr1_4:57003972-57003991 | None:intergenic | 40.0% | |
| ! | CTGATGATAGTGTGAATGTG+TGG | - | chr1_4:57003977-57003996 | Msa0172060:intron | 40.0% |
| !! | GGTTGCTTTGTGGTTTGGTA+AGG | - | chr1_4:57001272-57001291 | Msa0172060:three_prime_UTR | 45.0% |
| !! | GTGGTTTGGTAAGGGATGTT+TGG | - | chr1_4:57001281-57001300 | Msa0172060:three_prime_UTR | 45.0% |
| TTCCTTCACCTCTTCCACAA+TGG | - | chr1_4:57001369-57001388 | Msa0172060:three_prime_UTR | 45.0% | |
| AGAATACCTTGTGGCCATTG+TGG | + | chr1_4:57001386-57001405 | None:intergenic | 45.0% | |
| TTGTGAGTGATCTACTCAGG+TGG | - | chr1_4:57002088-57002107 | Msa0172060:CDS | 45.0% | |
| ! | AGACCTTTGGAGATTCCAGA+TGG | - | chr1_4:57002229-57002248 | Msa0172060:CDS | 45.0% |
| CCAAGACAGGAAAATCCATC+TGG | + | chr1_4:57002247-57002266 | None:intergenic | 45.0% | |
| !! | CCAGATGGATTTTCCTGTCT+TGG | - | chr1_4:57002244-57002263 | Msa0172060:CDS | 45.0% |
| ! | CGGCTTTATAACCCTTTGGA+GGG | + | chr1_4:57002453-57002472 | None:intergenic | 45.0% |
| ! | ACGGCTTTATAACCCTTTGG+AGG | + | chr1_4:57002454-57002473 | None:intergenic | 45.0% |
| CCAAAGGGTTATAAAGCCGT+CGG | - | chr1_4:57002454-57002473 | Msa0172060:CDS | 45.0% | |
| ! | TTTCGGTTCATCTGGATTGG+TGG | + | chr1_4:57002491-57002510 | None:intergenic | 45.0% |
| ! | GATAGAGGTATGCTAGCTAG+AGG | - | chr1_4:57002628-57002647 | Msa0172060:CDS | 45.0% |
| ! | CTAGCTAGAGGTGTATCTGT+CGG | - | chr1_4:57002640-57002659 | Msa0172060:CDS | 45.0% |
| TCTGTCGGAACATTCTTCTG+TGG | - | chr1_4:57002655-57002674 | Msa0172060:CDS | 45.0% | |
| TATTGAGCATTACGGGCCAA+CGG | - | chr1_4:57002777-57002796 | Msa0172060:CDS | 45.0% | |
| AAAAACCACGACACCGATGA+TGG | + | chr1_4:57002832-57002851 | None:intergenic | 45.0% | |
| GTATACTGCGGGTAATGCAA+AGG | - | chr1_4:57002870-57002889 | Msa0172060:CDS | 45.0% | |
| CCATCATTATATCCTCCACC+AGG | + | chr1_4:57002928-57002947 | None:intergenic | 45.0% | |
| CCTGGTGGAGGATATAATGA+TGG | - | chr1_4:57002925-57002944 | Msa0172060:CDS | 45.0% | |
| GAAGGGAAACATAGAGAGTG+CGG | - | chr1_4:57002999-57003018 | Msa0172060:CDS | 45.0% | |
| ! | TTTTTCTCTGAGCACAGTGG+AGG | - | chr1_4:57003222-57003241 | Msa0172060:CDS | 45.0% |
| TGAGCACAGTGGAGGTAAAT+GGG | - | chr1_4:57003230-57003249 | Msa0172060:CDS | 45.0% | |
| CAAGTTTGGATGATCCCTGA+AGG | + | chr1_4:57003350-57003369 | None:intergenic | 45.0% | |
| CTTCAGGGATCATCCAAACT+TGG | - | chr1_4:57003348-57003367 | Msa0172060:CDS | 45.0% | |
| GCGAACTCCTATTCCAAGTT+TGG | + | chr1_4:57003364-57003383 | None:intergenic | 45.0% | |
| ATTGTTGCTGCCGAGTATCT+TGG | - | chr1_4:57003435-57003454 | Msa0172060:intron | 45.0% | |
| GACTCCATCACCAAGATACT+CGG | + | chr1_4:57003448-57003467 | None:intergenic | 45.0% | |
| GTCCAAAGGAGAAGGACAAT+TGG | - | chr1_4:57003643-57003662 | Msa0172060:intron | 45.0% | |
| AGCCAATTGTCCTTCTCCTT+TGG | + | chr1_4:57003648-57003667 | None:intergenic | 45.0% | |
| AAGGAGAAGGACAATTGGCT+AGG | - | chr1_4:57003648-57003667 | Msa0172060:intron | 45.0% | |
| TGGATCCAGCTCATGAGAAA+TGG | + | chr1_4:57003720-57003739 | None:intergenic | 45.0% | |
| GACGGACCAGATATCAAGTT+TGG | + | chr1_4:57003929-57003948 | None:intergenic | 45.0% | |
| TCCGTCCAATCTAGATCCAA+CGG | - | chr1_4:57003943-57003962 | Msa0172060:intron | 45.0% | |
| GATACATGGCGACGATATCT+TGG | + | chr1_4:57004066-57004085 | None:intergenic | 45.0% | |
| TGAGTGATCTACTCAGGTGG+CGG | - | chr1_4:57002091-57002110 | Msa0172060:CDS | 50.0% | |
| CCCAAGGGATATTCTTCCAC+CGG | + | chr1_4:57002122-57002141 | None:intergenic | 50.0% | |
| CCGGTGGAAGAATATCCCTT+GGG | - | chr1_4:57002119-57002138 | Msa0172060:CDS | 50.0% | |
| GTGGCAGTAGTAACCAAGAC+AGG | + | chr1_4:57002260-57002279 | None:intergenic | 50.0% | |
| GCAACGGCTGATCATTAGAG+TGG | + | chr1_4:57002279-57002298 | None:intergenic | 50.0% | |
| TCTAATGATCAGCCGTTGCG+AGG | - | chr1_4:57002280-57002299 | Msa0172060:CDS | 50.0% | |
| ACAAGAACGTGTCCTCGCAA+CGG | + | chr1_4:57002295-57002314 | None:intergenic | 50.0% | |
| GACTCGGAACAATCAGCTTG+AGG | + | chr1_4:57002340-57002359 | None:intergenic | 50.0% | |
| AAGAGCTGGGGATTCTGACT+CGG | + | chr1_4:57002356-57002375 | None:intergenic | 50.0% | |
| TTGGTTGCCTAACCCTCCAA+AGG | - | chr1_4:57002438-57002457 | Msa0172060:CDS | 50.0% | |
| TGGTTGCCTAACCCTCCAAA+GGG | - | chr1_4:57002439-57002458 | Msa0172060:CDS | 50.0% | |
| ! | CCGACGGCTTTATAACCCTT+TGG | + | chr1_4:57002457-57002476 | None:intergenic | 50.0% |
| GGTGGTAACTACTATGCCGA+CGG | + | chr1_4:57002473-57002492 | None:intergenic | 50.0% | |
| GCTAGCATACCTCTATCGCA+AGG | + | chr1_4:57002625-57002644 | None:intergenic | 50.0% | |
| CACGGCACAAATTTACCTGG+TGG | - | chr1_4:57002910-57002929 | Msa0172060:CDS | 50.0% | |
| GGCACAAATTTACCTGGTGG+AGG | - | chr1_4:57002913-57002932 | Msa0172060:CDS | 50.0% | |
| GTAAAGGCTCCTCCTAATGC+TGG | + | chr1_4:57003045-57003064 | None:intergenic | 50.0% | |
| GGGTTGCAGGTCCATTGAAT+GGG | + | chr1_4:57003092-57003111 | None:intergenic | 50.0% | |
| AGGGTTGCAGGTCCATTGAA+TGG | + | chr1_4:57003093-57003112 | None:intergenic | 50.0% | |
| TCGGTGAACATGTCGGTGAT+TGG | - | chr1_4:57003148-57003167 | Msa0172060:CDS | 50.0% | |
| CGGTGAACATGTCGGTGATT+GGG | - | chr1_4:57003149-57003168 | Msa0172060:CDS | 50.0% | |
| CTGAGCACAGTGGAGGTAAA+TGG | - | chr1_4:57003229-57003248 | Msa0172060:CDS | 50.0% | |
| ATGCTAGCTACCCTCATGCA+GGG | - | chr1_4:57003319-57003338 | Msa0172060:CDS | 50.0% | |
| GAAGGTAAGTCCCTGCATGA+GGG | + | chr1_4:57003332-57003351 | None:intergenic | 50.0% | |
| TGAAGGTAAGTCCCTGCATG+AGG | + | chr1_4:57003333-57003352 | None:intergenic | 50.0% | |
| TCATGCAGGGACTTACCTTC+AGG | - | chr1_4:57003332-57003351 | Msa0172060:CDS | 50.0% | |
| CATGCAGGGACTTACCTTCA+GGG | - | chr1_4:57003333-57003352 | Msa0172060:CDS | 50.0% | |
| ! | TCCAACAGAGCTTTCTGGTG+AGG | - | chr1_4:57003608-57003627 | Msa0172060:intron | 50.0% |
| TCCTCACCAGAAAGCTCTGT+TGG | + | chr1_4:57003612-57003631 | None:intergenic | 50.0% | |
| ! | AACAGAGCTTTCTGGTGAGG+AGG | - | chr1_4:57003611-57003630 | Msa0172060:intron | 50.0% |
| ! | ACAGAGCTTTCTGGTGAGGA+GGG | - | chr1_4:57003612-57003631 | Msa0172060:intron | 50.0% |
| TCCTTCTCCTTTGGACCAGT+TGG | + | chr1_4:57003639-57003658 | None:intergenic | 50.0% | |
| GCCGTTGGATCTAGATTGGA+CGG | + | chr1_4:57003947-57003966 | None:intergenic | 50.0% | |
| CACTATCATCAGCACATCGG+TGG | + | chr1_4:57003969-57003988 | None:intergenic | 50.0% | |
| GGCCATTGTGGAAGAGGTGA+AGG | + | chr1_4:57001374-57001393 | None:intergenic | 55.0% | |
| CCTTGTGGCCATTGTGGAAG+AGG | + | chr1_4:57001380-57001399 | None:intergenic | 55.0% | |
| CCTCTTCCACAATGGCCACA+AGG | - | chr1_4:57001377-57001396 | Msa0172060:three_prime_UTR | 55.0% | |
| !! | TACTCAGGTGGCGGTTTTGC+CGG | - | chr1_4:57002100-57002119 | Msa0172060:CDS | 55.0% |
| GCCGGTGGAAGAATATCCCT+TGG | - | chr1_4:57002118-57002137 | Msa0172060:CDS | 55.0% | |
| GAGGACACGTTCTTGTCGCT+CGG | - | chr1_4:57002299-57002318 | Msa0172060:CDS | 55.0% | |
| AGGACACGTTCTTGTCGCTC+GGG | - | chr1_4:57002300-57002319 | Msa0172060:CDS | 55.0% | |
| !! | ACATGCCATCATCGGTGTCG+TGG | - | chr1_4:57002824-57002843 | Msa0172060:CDS | 55.0% |
| GGTGAAGTTGCTCACGCGAA+GGG | + | chr1_4:57003184-57003203 | None:intergenic | 55.0% | |
| CTTCGCGTGAGCAACTTCAC+CGG | - | chr1_4:57003183-57003202 | Msa0172060:CDS | 55.0% | |
| GCAACTTCACCGGAGAGCTT+TGG | - | chr1_4:57003193-57003212 | Msa0172060:CDS | 55.0% | |
| CATGCTAGCTACCCTCATGC+AGG | - | chr1_4:57003318-57003337 | Msa0172060:CDS | 55.0% | |
| GCTGCCGAGTATCTTGGTGA+TGG | - | chr1_4:57003441-57003460 | Msa0172060:intron | 55.0% | |
| ! | CAGAGCTTTCTGGTGAGGAG+GGG | - | chr1_4:57003613-57003632 | Msa0172060:intron | 55.0% |
| GCCAACTGGTCCAAAGGAGA+AGG | - | chr1_4:57003635-57003654 | Msa0172060:intron | 55.0% | |
| GGTGGCCGTTGGATCTAGAT+TGG | + | chr1_4:57003951-57003970 | None:intergenic | 55.0% | |
| ! | GCTGTATAGGAGGTGTGCCT+CGG | - | chr1_4:57004102-57004121 | Msa0172060:intron | 55.0% |
| CGGTGAAGTTGCTCACGCGA+AGG | + | chr1_4:57003185-57003204 | None:intergenic | 60.0% | |
| TACGCATTCACGCAGTCGGC+AGG | - | chr1_4:57003827-57003846 | Msa0172060:intron | 60.0% | |
| GCAGGCACGTCAGTGGTCAT+TGG | - | chr1_4:57003845-57003864 | Msa0172060:intron | 60.0% | |
| ATCAGCACATCGGTGGCCGT+TGG | + | chr1_4:57003962-57003981 | None:intergenic | 60.0% | |
| !! | TCAGGTGGCGGTTTTGCCGG+TGG | - | chr1_4:57002103-57002122 | Msa0172060:CDS | 65.0% |
| TCTGGTGAGGAGGGGCCAAC+TGG | - | chr1_4:57003621-57003640 | Msa0172060:intron | 65.0% | |
| GGAGGGGCCAACTGGTCCAA+AGG | - | chr1_4:57003629-57003648 | Msa0172060:intron | 65.0% | |
| GCAGTCGGCAGGCACGTCAG+TGG | - | chr1_4:57003838-57003857 | Msa0172060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 57001143 | 57004363 | 57001143 | ID=Msa0172060;Name=Msa0172060 |
| chr1_4 | mRNA | 57001143 | 57004363 | 57001143 | ID=Msa0172060-mRNA-1;Parent=Msa0172060;Name=Msa0172060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=153|1|1|1|1|1|2|677|560 |
| chr1_4 | exon | 57001143 | 57003399 | 57001143 | ID=Msa0172060-mRNA-1:exon:17397;Parent=Msa0172060-mRNA-1 |
| chr1_4 | exon | 57004108 | 57004363 | 57004108 | ID=Msa0172060-mRNA-1:exon:17396;Parent=Msa0172060-mRNA-1 |
| chr1_4 | five_prime_UTR | 57004211 | 57004363 | 57004211 | ID=Msa0172060-mRNA-1:five_prime_utr;Parent=Msa0172060-mRNA-1 |
| chr1_4 | CDS | 57004108 | 57004210 | 57004108 | ID=Msa0172060-mRNA-1:cds;Parent=Msa0172060-mRNA-1 |
| chr1_4 | CDS | 57001820 | 57003399 | 57001820 | ID=Msa0172060-mRNA-1:cds;Parent=Msa0172060-mRNA-1 |
| chr1_4 | three_prime_UTR | 57001143 | 57001819 | 57001143 | ID=Msa0172060-mRNA-1:three_prime_utr;Parent=Msa0172060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
