AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122150 MtrunA17_Chr7g0256211 99.558 452 2 0 1 452 1 452 0.0 924
Msa1122150 MtrunA17_Chr8g0353501 67.591 469 132 9 1 452 1 466 0.0 577
Msa1122150 MtrunA17_Chr5g0422771 52.106 451 177 10 31 452 24 464 3.59e-144 420
Msa1122150 MtrunA17_Chr1g0210151 62.739 314 101 4 144 452 38 340 1.86e-131 383
Msa1122150 MtrunA17_Chr7g0258321 58.232 328 124 5 134 452 140 463 2.12e-128 379
Msa1122150 MtrunA17_Chr1g0174701 61.688 308 102 6 156 452 204 506 4.58e-127 377
Msa1122150 MtrunA17_Chr2g0321431 61.458 288 101 2 165 452 192 469 9.50e-122 363
Msa1122150 MtrunA17_Chr3g0124601 59.000 300 110 3 158 452 70 361 8.81e-114 338
Msa1122150 MtrunA17_Chr4g0026401 49.025 359 160 5 101 452 119 461 1.47e-110 335
Msa1122150 MtrunA17_Chr3g0115371 47.076 342 156 5 127 450 13 347 4.75e-96 293
Msa1122150 MtrunA17_Chr8g0382861 51.351 296 130 4 162 452 70 356 1.21e-93 287
Msa1122150 MtrunA17_Chr5g0424861 51.389 288 128 4 167 449 67 347 1.86e-89 276
Msa1122150 MtrunA17_Chr3g0093451 56.061 198 70 4 133 319 18 209 1.13e-71 225
Msa1122150 MtrunA17_Chr5g0424851 46.818 220 109 3 231 449 10 222 3.58e-58 197
Msa1122150 MtrunA17_Chr5g0424851 43.689 206 109 2 235 440 228 426 7.93e-53 183
Msa1122150 MtrunA17_Chr1g0196951 32.367 207 110 5 244 445 59 240 4.99e-21 91.7
Msa1122150 MtrunA17_Chr8g0384821 27.126 247 140 5 228 440 8 248 1.68e-16 79.3
Msa1122150 MtrunA17_Chr2g0315631 22.535 213 124 3 239 431 8 199 7.71e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122150 AT3G12250.6 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1122150 AT3G12250.2 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1122150 AT3G12250.7 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1122150 AT3G12250.1 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1122150 AT5G06950.2 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1122150 AT5G06950.4 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1122150 AT5G06950.1 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1122150 AT5G06950.5 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1122150 AT5G06950.3 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1122150 AT3G12250.5 77.852 298 65 1 155 452 7 303 1.61e-166 471
Msa1122150 AT3G12250.3 77.852 298 65 1 155 452 28 324 4.12e-166 471
Msa1122150 AT3G12250.4 77.852 298 65 1 155 452 59 355 6.01e-165 469
Msa1122150 AT5G06960.2 73.292 322 77 3 139 452 10 330 5.05e-155 442
Msa1122150 AT5G06960.1 73.292 322 77 3 139 452 10 330 5.05e-155 442
Msa1122150 AT5G06960.3 77.083 288 65 1 165 452 24 310 5.15e-155 442
Msa1122150 AT1G68640.1 70.103 291 84 2 164 452 163 452 8.84e-138 403
Msa1122150 AT1G08320.2 58.104 327 124 4 129 452 13 329 7.52e-128 375
Msa1122150 AT1G08320.5 58.104 327 124 4 129 452 13 329 7.52e-128 375
Msa1122150 AT1G08320.1 58.104 327 124 4 129 452 137 453 3.85e-126 375
Msa1122150 AT1G08320.4 58.104 327 124 4 129 452 137 453 3.85e-126 375
Msa1122150 AT1G08320.3 58.104 327 124 4 129 452 137 453 3.85e-126 375
Msa1122150 AT5G06839.2 56.954 302 117 3 164 452 115 416 4.77e-117 349
Msa1122150 AT5G06839.1 57.143 301 117 3 164 452 115 415 1.68e-116 348
Msa1122150 AT5G06839.3 57.143 301 117 3 164 452 158 458 2.08e-116 349
Msa1122150 AT5G10030.5 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1122150 AT5G10030.3 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1122150 AT5G10030.1 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1122150 AT5G10030.4 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1122150 AT5G10030.2 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1122150 AT1G22070.1 56.393 305 124 3 152 452 83 382 5.38e-112 335
Msa1122150 AT5G65210.6 55.667 300 120 3 158 452 5 296 3.19e-109 325
Msa1122150 AT5G65210.5 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1122150 AT5G65210.7 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1122150 AT5G65210.3 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1122150 AT5G65210.1 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1122150 AT5G65210.2 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1122150 AT5G65210.4 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1122150 AT1G77920.1 49.046 367 155 6 88 452 30 366 5.41e-108 324
Msa1122150 AT1G58330.1 26.244 221 145 5 234 442 9 223 6.57e-15 74.3
Msa1122150 AT3G14880.2 24.675 231 131 5 227 431 1 214 2.00e-14 73.2
Msa1122150 AT3G14880.1 23.950 238 131 5 227 431 1 221 2.82e-13 69.7

Find 157 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTCTTGTTTCTTCTTTC+TGG -0.049806 7_3:+72466098 Msa1122150:five_prime_UTR
CCTTCTCGAATTTCTGATTT+TGG 0.114816 7_3:+72467498 Msa1122150:CDS
GTCATTTCTGAAACAAATTA+TGG 0.166302 7_3:-72471218 None:intergenic
ATCAACTGTTGTTCAGTTAA+AGG 0.191657 7_3:-72469890 None:intergenic
AAGGCCTTGTTGTGGATTTA+AGG 0.198913 7_3:+72466546 Msa1122150:intron
AAAAGACGCGCTGCCAAATT+TGG 0.207656 7_3:+72468136 Msa1122150:CDS
CCAAATTTGGCTTCGACATC+TGG 0.240156 7_3:+72468149 Msa1122150:CDS
AGCCATTTGTCCCATGTAAT+TGG 0.245079 7_3:-72470050 None:intergenic
ATCTCTTGTTTCTTCTTTCT+GGG 0.246404 7_3:+72466099 Msa1122150:five_prime_UTR
CCAGATGTCGAAGCCAAATT+TGG 0.252160 7_3:-72468149 None:intergenic
TCTGAAAGCATACAAATATA+TGG 0.259906 7_3:+72471159 Msa1122150:three_prime_UTR
CCCAACCCATCAGGTGCTTC+TGG 0.270597 7_3:+72470019 Msa1122150:CDS
TTAGGTGCTGATATTCAATT+TGG 0.276431 7_3:+72467942 Msa1122150:CDS
TGCATGAAGCTGGTGTCTTT+TGG 0.285414 7_3:+72470677 Msa1122150:three_prime_UTR
AACCTCTCTGCTGCAATTGC+TGG 0.307118 7_3:+72468092 Msa1122150:CDS
TTCAACTTTGTCACTTGCTT+AGG 0.309843 7_3:+72466052 Msa1122150:five_prime_UTR
GCTGTAGCTCTTGCTCTAGT+TGG 0.316242 7_3:-72468706 None:intergenic
AGAAACAAGAGATGGGAAAA+TGG 0.316723 7_3:-72466089 None:intergenic
ACAAGTCTTGTTATTGTTGT+TGG 0.319095 7_3:+72466021 Msa1122150:five_prime_UTR
GCAGCTTCTTGTAAGTCATT+TGG 0.321728 7_3:+72469865 Msa1122150:intron
GATGGTTAGAAGAGCATAAT+AGG 0.327313 7_3:+72469483 Msa1122150:CDS
GAGGATGGTTTCCTCTCTCT+TGG 0.334154 7_3:+72470955 Msa1122150:three_prime_UTR
CTGGCGGCCATCGTGAGAAT+TGG 0.336333 7_3:+72468168 Msa1122150:CDS
TATTGCAGCCCTTAGTTCAT+TGG 0.346864 7_3:-72469510 None:intergenic
TCATGTGGATTGGAGGCTTT+CGG 0.349268 7_3:+72469684 Msa1122150:CDS
TGGCGGCCATCGTGAGAATT+GGG 0.354181 7_3:+72468169 Msa1122150:CDS
GTGATAGAAATAGTTAGATT+TGG 0.357389 7_3:+72471251 Msa1122150:three_prime_UTR
GGAATATTTATTTCAAGTAC+TGG 0.364580 7_3:+72468862 Msa1122150:CDS
GAAAAGCCGACTGAGGAAAA+AGG 0.365804 7_3:+72468542 Msa1122150:CDS
GAAATTTACATGGAATTAGA+TGG 0.368926 7_3:-72466675 None:intergenic
TACCATTTCCACTCATTGAA+TGG 0.377090 7_3:-72468894 None:intergenic
TCTCAATAATTTGATTATAT+AGG 0.377920 7_3:+72470837 Msa1122150:three_prime_UTR
CATACTTCTGCTAAGATTCA+TGG 0.378386 7_3:-72467559 None:intergenic
ACACTGTTGTATGTATATAT+TGG 0.384512 7_3:+72471009 Msa1122150:three_prime_UTR
TCGGTCATCTGAACTTCTTA+AGG 0.384806 7_3:+72469703 Msa1122150:CDS
TTTAACTGAACAACAGTTGA+TGG 0.387147 7_3:+72469892 Msa1122150:CDS
TCAACTTTGTCACTTGCTTA+GGG 0.389594 7_3:+72466053 Msa1122150:five_prime_UTR
TCAATTTGGTGCTTTAAGTA+AGG 0.395237 7_3:+72467956 Msa1122150:CDS
TCAGAAATCAAGCTTATTTG+AGG 0.402345 7_3:+72470936 Msa1122150:three_prime_UTR
CTTTCCGAGACATTGGCTAA+TGG 0.402534 7_3:+72469992 Msa1122150:CDS
AGAAAGATAAGATAAGAAAA+TGG 0.403314 7_3:+72466577 Msa1122150:five_prime_UTR
TGTATGATAGATAGAGTTGA+AGG 0.404237 7_3:+72470860 Msa1122150:three_prime_UTR
TGTTGTGGATTTAAGGTTTG+TGG 0.407136 7_3:+72466553 Msa1122150:five_prime_UTR
GATAAGAAAATGGTTATTGA+TGG 0.411169 7_3:+72466587 Msa1122150:exon
CTCAAAATCGTGAAGCTGCC+AGG 0.414559 7_3:+72468520 Msa1122150:CDS
AAAGCAAATAGCCAAGCTTT+AGG 0.415265 7_3:+72467924 Msa1122150:CDS
TGCGAGCTCTGAGTTCTCTA+TGG 0.421587 7_3:+72470603 Msa1122150:CDS
TCATTTCTGAAACAAATTAT+GGG 0.421783 7_3:-72471217 None:intergenic
ACCCATTCAATGAGTGGAAA+TGG 0.422756 7_3:+72468892 Msa1122150:CDS
GGAAAGCTTGGTACTCTTGA+GGG 0.428090 7_3:+72470082 Msa1122150:CDS
CTGTAGCTCTTGCTCTAGTT+GGG 0.432408 7_3:-72468705 None:intergenic
GTTGCAACGTTTGCTGCCTC+AGG 0.435590 7_3:-72470508 None:intergenic
CTGCAATGCGTCCATTCCTT+GGG 0.435984 7_3:-72469963 None:intergenic
AAGAGCTCGAGCTGATTGTC+TGG 0.439976 7_3:-72470552 None:intergenic
CTCTATGGCTTGCACGGCCA+AGG 0.444992 7_3:+72470618 Msa1122150:CDS
TTTGAAACAGTTTACTCCCT+TGG 0.445923 7_3:-72470635 None:intergenic
TGAAAGATCAAAAGACAAAT+CGG 0.446752 7_3:+72468401 Msa1122150:CDS
TATTCTCCTCCACATACTAC+TGG 0.447343 7_3:+72470767 Msa1122150:three_prime_UTR
TGGAAATGTGGCCAATTACA+TGG 0.448525 7_3:+72470039 Msa1122150:CDS
GCTGCAATGCGTCCATTCCT+TGG 0.454033 7_3:-72469964 None:intergenic
ATAGGCAAACCAATGAACTA+AGG 0.455979 7_3:+72469501 Msa1122150:CDS
CCAGAAGCACCTGATGGGTT+GGG 0.456476 7_3:-72470019 None:intergenic
GACACTAACAAGGTTGTTAA+CGG 0.458291 7_3:+72466633 Msa1122150:CDS
ACCATTTCCACTCATTGAAT+GGG 0.458496 7_3:-72468893 None:intergenic
GCTACAGCGAGCACGCCAGC+AGG 0.459908 7_3:+72468721 Msa1122150:CDS
AAAAGACAAATCGGATCAAA+AGG 0.461930 7_3:+72468410 Msa1122150:CDS
CTGAAAGCATACAAATATAT+GGG 0.465059 7_3:+72471160 Msa1122150:three_prime_UTR
TCCAGAAGCACCTGATGGGT+TGG 0.465437 7_3:-72470020 None:intergenic
CTCAATTTGAAGATATCTAC+AGG 0.469063 7_3:+72469585 Msa1122150:CDS
GAAATCCTAGAGATTGTTCA+AGG 0.473552 7_3:-72467524 None:intergenic
ACCTCTCTGCTGCAATTGCT+GGG 0.478042 7_3:+72468093 Msa1122150:CDS
CACATGAAACACCTCTCAGC+TGG 0.482882 7_3:-72469668 None:intergenic
GGGACAAATGGCTATGGCCA+TGG 0.486901 7_3:+72470060 Msa1122150:CDS
GGCCAATTACATGGGACAAA+TGG 0.487544 7_3:+72470048 Msa1122150:CDS
TGCAACAATTAGAGAGCAGC+AGG 0.488377 7_3:+72468672 Msa1122150:CDS
AATGGTTCACCCAACCCATC+AGG 0.491558 7_3:+72470010 Msa1122150:CDS
GAGAACTCAGAGCTCGCAGC+CGG 0.499226 7_3:-72470598 None:intergenic
GGAGCCCTTGAACAATCTCT+AGG 0.499416 7_3:+72467519 Msa1122150:CDS
CTGCAATAAATTCTCATGCT+GGG 0.499442 7_3:+72469525 Msa1122150:CDS
TTGGATTTCAGGGGCATGGA+GGG 0.504205 7_3:+72467462 Msa1122150:intron
ACACTAACAAGGTTGTTAAC+GGG 0.504918 7_3:+72466634 Msa1122150:CDS
AAACGTTGCAACAAATGCTT+CGG 0.506047 7_3:+72470519 Msa1122150:CDS
GAGAGGTGTTTCATGTGGAT+TGG 0.507638 7_3:+72469674 Msa1122150:CDS
ATGTTCTTTCTGCATGAAGC+TGG 0.508217 7_3:+72470667 Msa1122150:three_prime_UTR
TGTTCAGACGTTAAGACGGC+TGG 0.509648 7_3:+72468497 Msa1122150:intron
GGTACAGTCCATTGCAAACT+CGG 0.515997 7_3:+72468064 Msa1122150:intron
GCTGCAATAAATTCTCATGC+TGG 0.516591 7_3:+72469524 Msa1122150:CDS
AGGTGTTTCATGTGGATTGG+AGG 0.518347 7_3:+72469677 Msa1122150:CDS
GAATATCAGCACCTAAAGCT+TGG 0.527661 7_3:-72467935 None:intergenic
GGGAGAGTCCAACATGGCTG+AGG 0.529600 7_3:+72468190 Msa1122150:CDS
GCAATCACTTTCCGAGACAT+TGG 0.530262 7_3:+72469985 Msa1122150:CDS
TGTTTACAAGCACCACAACT+AGG 0.531123 7_3:-72470725 None:intergenic
CAGAAAGAAGAAACAAGAGA+TGG 0.534470 7_3:-72466097 None:intergenic
GCTTTCATTTGATTAAACAC+TGG 0.536527 7_3:-72467906 None:intergenic
TACAGAAGACAAGAATCAAA+TGG 0.538000 7_3:+72468238 Msa1122150:CDS
CAATAAGTGATTATTTCTCC+CGG 0.538111 7_3:+72470579 Msa1122150:CDS
AAATCAAGCTTATTTGAGGA+TGG 0.541729 7_3:+72470940 Msa1122150:three_prime_UTR
GTATGATAGATAGAGTTGAA+GGG 0.543083 7_3:+72470861 Msa1122150:three_prime_UTR
GCTATGGCCATGGGAAAGCT+TGG 0.544267 7_3:+72470070 Msa1122150:CDS
ATAAGAAAATGGTTATTGAT+GGG 0.544270 7_3:+72466588 Msa1122150:exon
TTAACTGAACAACAGTTGAT+GGG 0.552406 7_3:+72469893 Msa1122150:CDS
CAGTAGAGGTAGAGCTGCTG+AGG 0.554988 7_3:+72466611 Msa1122150:CDS
AGAAAGAAGAAACAAGAGAT+GGG 0.555058 7_3:-72466096 None:intergenic
AGGAAAAGAAACCAAGAGAG+AGG 0.555494 7_3:-72470966 None:intergenic
GGACAAATGGCTATGGCCAT+GGG 0.556028 7_3:+72470061 Msa1122150:CDS
AGACGCTCTTTCCCAAGGAA+TGG 0.556679 7_3:+72469952 Msa1122150:CDS
GTTTATATCCGAGTTTGCAA+TGG 0.558175 7_3:-72468072 None:intergenic
GGGAAAGCTTGGTACTCTTG+AGG 0.558797 7_3:+72470081 Msa1122150:CDS
TTAGATGGAGGTGCGTAGCT+CGG 0.560830 7_3:-72466660 None:intergenic
TATGATAGATAGAGTTGAAG+GGG 0.561298 7_3:+72470862 Msa1122150:three_prime_UTR
ATCTCTAGGATTTCGTGTTG+AGG 0.565350 7_3:+72467533 Msa1122150:CDS
AGCGCTTCCCTCAGCCATGT+TGG 0.566699 7_3:-72468198 None:intergenic
ACATTTCCAGAAGCACCTGA+TGG 0.566763 7_3:-72470025 None:intergenic
GAAGATATCTACAGGCTGAA+AGG 0.567290 7_3:+72469593 Msa1122150:CDS
TCCACATTCTATCAGGAATG+TGG 0.571375 7_3:+72469639 Msa1122150:CDS
TCTTGAGGGATTTCTTCGCC+AGG 0.573076 7_3:+72470096 Msa1122150:CDS
ATCAGGTGCTTCTGGAAATG+TGG 0.573606 7_3:+72470027 Msa1122150:CDS
TGGTTATTGATGGGCAGTAG+AGG 0.574524 7_3:+72466597 Msa1122150:exon
TCTATGGCTTGCACGGCCAA+GGG 0.578391 7_3:+72470619 Msa1122150:CDS
TAGGCAAACCAATGAACTAA+GGG 0.579382 7_3:+72469502 Msa1122150:CDS
CATTTCCAGAAGCACCTGAT+GGG 0.580742 7_3:-72470024 None:intergenic
CAGCTGAGAGGTGTTTCATG+TGG 0.583907 7_3:+72469669 Msa1122150:CDS
TGCAATAAATTCTCATGCTG+GGG 0.590748 7_3:+72469526 Msa1122150:CDS
TCCACATTCCTGATAGAATG+TGG 0.593998 7_3:-72469640 None:intergenic
CAAGAGACATATCAACTGAC+TGG 0.596939 7_3:-72471067 None:intergenic
GCAACCACAAACCATTAAGC+AGG 0.597550 7_3:-72470986 None:intergenic
TTACATGGGACAAATGGCTA+TGG 0.598092 7_3:+72470054 Msa1122150:CDS
AGAACTCAGAGCTCGCAGCC+GGG 0.599159 7_3:-72470597 None:intergenic
TGAAATTGTCGACAATGGTA+CGG 0.603907 7_3:-72469559 None:intergenic
AATTTGGCTTCGACATCTGG+CGG 0.604746 7_3:+72468152 Msa1122150:CDS
TGAGTTCTCTATGGCTTGCA+CGG 0.606772 7_3:+72470612 Msa1122150:CDS
GCTGAAGACGCTCTTTCCCA+AGG 0.608444 7_3:+72469947 Msa1122150:CDS
TGTACTACACCAGTAGTATG+TGG 0.614493 7_3:-72470776 None:intergenic
GAGCAGACCCATTCAATGAG+TGG 0.614912 7_3:+72468886 Msa1122150:CDS
GGAGAGTCCAACATGGCTGA+GGG 0.616774 7_3:+72468191 Msa1122150:CDS
CCAAAATCAGAAATTCGAGA+AGG 0.617363 7_3:-72467498 None:intergenic
TGAACCATTAGCCAATGTCT+CGG 0.617863 7_3:-72469996 None:intergenic
AGCTGCTGAGGACACTAACA+AGG 0.621501 7_3:+72466623 Msa1122150:CDS
GGCGGCCATCGTGAGAATTG+GGG 0.627011 7_3:+72468170 Msa1122150:CDS
AAGAGTACCAAGCTTTCCCA+TGG 0.628858 7_3:-72470077 None:intergenic
GGAAATGTGGCCAATTACAT+GGG 0.630650 7_3:+72470040 Msa1122150:CDS
TTTGGATTTCAGGGGCATGG+AGG 0.641756 7_3:+72467461 Msa1122150:intron
AGTCATGAAATTGTCGACAA+TGG 0.650887 7_3:-72469564 None:intergenic
ACCCAGCAATTGCAGCAGAG+AGG 0.653003 7_3:-72468094 None:intergenic
ATGATAGATAGAGTTGAAGG+GGG 0.653631 7_3:+72470863 Msa1122150:three_prime_UTR
ATTTACATGGAATTAGATGG+AGG 0.655985 7_3:-72466672 None:intergenic
ACTCTCCCCAATTCTCACGA+TGG 0.657176 7_3:-72468175 None:intergenic
CTGCCAGGAAAAGCCGACTG+AGG 0.660519 7_3:+72468535 Msa1122150:CDS
GTTTATAGGCTGATAACCTG+AGG 0.665954 7_3:+72470492 Msa1122150:intron
AAATCCTAGAGATTGTTCAA+GGG 0.671979 7_3:-72467523 None:intergenic
TGTGTTTCAAGGCCTTGTTG+TGG 0.679209 7_3:+72466538 Msa1122150:intron
TGTGGAAGACTCCAGCTGAG+AGG 0.690086 7_3:+72469657 Msa1122150:CDS
GTTGTGAAGAAGCCTAGTTG+TGG 0.701594 7_3:+72470713 Msa1122150:three_prime_UTR
GAATTGGGGAGAGTCCAACA+TGG 0.702168 7_3:+72468184 Msa1122150:CDS
CAAACCTTAAATCCACAACA+AGG 0.707379 7_3:-72466550 None:intergenic
ACTACACCAGTAGTATGTGG+AGG 0.723078 7_3:-72470773 None:intergenic
TTGATGCAGAATACGCACGA+TGG 0.731911 7_3:+72469465 Msa1122150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTTTAAATTTATTGT+AGG + chr7_3:72466766-72466785 Msa1122150:intron 10.0%
!! AAAAAAAACAACAAAAAAAA+GGG - chr7_3:72467616-72467635 None:intergenic 10.0%
!! AAAAAAAAACAACAAAAAAA+AGG - chr7_3:72467617-72467636 None:intergenic 10.0%
!!! TATCATTATTTACTTTTTTA+AGG - chr7_3:72467795-72467814 None:intergenic 10.0%
!!! TGATTTTTATGAGAATTTAA+TGG - chr7_3:72466151-72466170 None:intergenic 15.0%
!!! TTATTTTTTTCTTTCTGTTT+TGG + chr7_3:72466252-72466271 Msa1122150:intron 15.0%
!! AACAAAATAAGAAAAAACAT+TGG - chr7_3:72466374-72466393 None:intergenic 15.0%
!! AAGATTAACTTTAAACAAAA+GGG - chr7_3:72466709-72466728 None:intergenic 15.0%
!! TAAGATTAACTTTAAACAAA+AGG - chr7_3:72466710-72466729 None:intergenic 15.0%
!! AAAAAAACAACAAAAAAAAG+GGG - chr7_3:72467615-72467634 None:intergenic 15.0%
!!! TTGCAATTTATTGATTTTAT+TGG - chr7_3:72467994-72468013 None:intergenic 15.0%
!! ATTTACAATTTAACAGAAAA+AGG - chr7_3:72468573-72468592 None:intergenic 15.0%
!!! TTTGATTATTTATCTTTTCT+AGG + chr7_3:72468840-72468859 Msa1122150:intron 15.0%
!!! TTGATTATTTATCTTTTCTA+GGG + chr7_3:72468841-72468860 Msa1122150:intron 15.0%
!! TCTCAATAATTTGATTATAT+AGG + chr7_3:72470837-72470856 Msa1122150:three_prime_UTR 15.0%
!!! AGAAATAGTATTTGTATTTT+AGG + chr7_3:72470893-72470912 Msa1122150:three_prime_UTR 15.0%
!!! TTTGTTACCAATGTTATTTA+AGG + chr7_3:72466388-72466407 Msa1122150:intron 20.0%
!! AAAACATCCTTAAATAACAT+TGG - chr7_3:72466398-72466417 None:intergenic 20.0%
!!! TTAATTCATGTTTTTCTTTG+TGG + chr7_3:72466478-72466497 Msa1122150:intron 20.0%
!! AGAAAGATAAGATAAGAAAA+TGG + chr7_3:72466577-72466596 Msa1122150:five_prime_UTR 20.0%
!! ATAAGAAAATGGTTATTGAT+GGG + chr7_3:72466588-72466607 Msa1122150:exon 20.0%
!!! TTGGGAATTTTTAAATTTAG+AGG + chr7_3:72466957-72466976 Msa1122150:intron 20.0%
!!! ATGAACAAAGTTTTAAATTG+CGG + chr7_3:72466982-72467001 Msa1122150:intron 20.0%
!! AAGATGGTATACAAATAAAT+AGG - chr7_3:72467880-72467899 None:intergenic 20.0%
!! ATTGCTTTACTTTAATCATA+CGG + chr7_3:72468263-72468282 Msa1122150:intron 20.0%
!! CAAAAGCAAAATTTAACATA+TGG - chr7_3:72468479-72468498 None:intergenic 20.0%
!! ATGAAAAAAGAAACATATCA+CGG - chr7_3:72469105-72469124 None:intergenic 20.0%
!!! GATATTTTTAAAGGAAATGT+TGG - chr7_3:72469136-72469155 None:intergenic 20.0%
!!! AAGAGGTTTGATATTTTTAA+AGG - chr7_3:72469145-72469164 None:intergenic 20.0%
!! AAATATCTGTATATGTTAAG+AGG - chr7_3:72469162-72469181 None:intergenic 20.0%
!!! TGTTAGAACTTATTTTTAGT+CGG + chr7_3:72469200-72469219 Msa1122150:intron 20.0%
!!! TCATTTCTGAAACAAATTAT+GGG - chr7_3:72471220-72471239 None:intergenic 20.0%
! GAATTTAATGGAAATTGAAG+AGG - chr7_3:72466139-72466158 None:intergenic 25.0%
! AAAGTTATCTTTGTGTTTCA+AGG + chr7_3:72466527-72466546 Msa1122150:intron 25.0%
! GATAAGAAAATGGTTATTGA+TGG + chr7_3:72466587-72466606 Msa1122150:exon 25.0%
! GAAATTTACATGGAATTAGA+TGG - chr7_3:72466678-72466697 None:intergenic 25.0%
! AAGTTAATCTTACTCTTGAT+TGG + chr7_3:72466718-72466737 Msa1122150:intron 25.0%
!!! ATTGGTCTTGCTATTAATTT+TGG + chr7_3:72466736-72466755 Msa1122150:intron 25.0%
!!! TTGGTCTTGCTATTAATTTT+GGG + chr7_3:72466737-72466756 Msa1122150:intron 25.0%
! GTAGAAATTATGCATGTTAT+TGG + chr7_3:72466847-72466866 Msa1122150:intron 25.0%
!!! TAAACGGAAGTATTTTTACA+GGG - chr7_3:72467127-72467146 None:intergenic 25.0%
! GTTATGTTCTATGAAGTAAA+CGG - chr7_3:72467143-72467162 None:intergenic 25.0%
! AATAGCAATCTTCTATGAAA+AGG - chr7_3:72467280-72467299 None:intergenic 25.0%
! TCAAGTTTCAAAGCTAAAAA+GGG - chr7_3:72467364-72467383 None:intergenic 25.0%
!! TTCAAGTTTCAAAGCTAAAA+AGG - chr7_3:72467365-72467384 None:intergenic 25.0%
! TGAAACTTGAATTTCATCAT+TGG + chr7_3:72467374-72467393 Msa1122150:intron 25.0%
! CAACATGTTAAACATATGTT+GGG - chr7_3:72467434-72467453 None:intergenic 25.0%
! ACAACATGTTAAACATATGT+TGG - chr7_3:72467435-72467454 None:intergenic 25.0%
!! TTAACATGTTGTCATGATTT+TGG + chr7_3:72467443-72467462 Msa1122150:intron 25.0%
!! TTTTTAACACACAACGATTA+AGG - chr7_3:72467721-72467740 None:intergenic 25.0%
! ACAAATAAATAGGTTAATCG+AGG - chr7_3:72467870-72467889 None:intergenic 25.0%
!!! AATGAAGATGGCTATTTTAT+TGG - chr7_3:72468349-72468368 None:intergenic 25.0%
! TGAAAGATCAAAAGACAAAT+CGG + chr7_3:72468401-72468420 Msa1122150:CDS 25.0%
!! GGAATATTTATTTCAAGTAC+TGG + chr7_3:72468862-72468881 Msa1122150:CDS 25.0%
!! TAACATTGAATTTAAAGCTG+TGG + chr7_3:72469022-72469041 Msa1122150:intron 25.0%
!!! GATTAAGTGTTGGATTTTTA+AGG + chr7_3:72469788-72469807 Msa1122150:intron 25.0%
! TATACTCTTTCTCACTTTAT+TGG - chr7_3:72470310-72470329 None:intergenic 25.0%
! AATTAATTGTGTACCTTAGA+GGG + chr7_3:72470334-72470353 Msa1122150:intron 25.0%
! AAAGGAAAACAAAAGTGAAT+TGG - chr7_3:72470464-72470483 None:intergenic 25.0%
! ACACTGTTGTATGTATATAT+TGG + chr7_3:72471009-72471028 Msa1122150:three_prime_UTR 25.0%
! GTTCTTGAGATAAAAATTGT+AGG + chr7_3:72471119-72471138 Msa1122150:three_prime_UTR 25.0%
!! TCTGAAAGCATACAAATATA+TGG + chr7_3:72471159-72471178 Msa1122150:three_prime_UTR 25.0%
!! CTGAAAGCATACAAATATAT+GGG + chr7_3:72471160-72471179 Msa1122150:three_prime_UTR 25.0%
!!! GTCATTTCTGAAACAAATTA+TGG - chr7_3:72471221-72471240 None:intergenic 25.0%
!! ACAAGTCTTGTTATTGTTGT+TGG + chr7_3:72466021-72466040 Msa1122150:five_prime_UTR 30.0%
AGAAAGAAGAAACAAGAGAT+GGG - chr7_3:72466099-72466118 None:intergenic 30.0%
! ATCTCTTGTTTCTTCTTTCT+GGG + chr7_3:72466099-72466118 Msa1122150:five_prime_UTR 30.0%
!!! TGTTCAGCTTTGTTTTTACA+AGG + chr7_3:72466198-72466217 Msa1122150:intron 30.0%
!! CAGTTTTGTACTTTGTTTCT+AGG + chr7_3:72466294-72466313 Msa1122150:intron 30.0%
AAAAACATTGGCAACGAAAT+AGG - chr7_3:72466362-72466381 None:intergenic 30.0%
TAACTACAAGTTCATGAAAC+AGG - chr7_3:72466430-72466449 None:intergenic 30.0%
!! TGTGGTTTAATTTTCTCATG+TGG + chr7_3:72466496-72466515 Msa1122150:intron 30.0%
!! GTGGTTTAATTTTCTCATGT+GGG + chr7_3:72466497-72466516 Msa1122150:intron 30.0%
ATTTACATGGAATTAGATGG+AGG - chr7_3:72466675-72466694 None:intergenic 30.0%
ATTCCATGTAAATTTCTCTG+AGG + chr7_3:72466682-72466701 Msa1122150:intron 30.0%
!!! TGGTCTTGCTATTAATTTTG+GGG + chr7_3:72466738-72466757 Msa1122150:intron 30.0%
TAGTACATGTGTTATGTAAC+TGG + chr7_3:72466825-72466844 Msa1122150:intron 30.0%
TATGACGTTGAATTGAAGTT+AGG + chr7_3:72466875-72466894 Msa1122150:intron 30.0%
ATGACGTTGAATTGAAGTTA+GGG + chr7_3:72466876-72466895 Msa1122150:intron 30.0%
! ATTGAAGTTAGGGTCTATTT+TGG + chr7_3:72466886-72466905 Msa1122150:intron 30.0%
CAAAATTCTCTCCAATATCA+AGG - chr7_3:72467015-72467034 None:intergenic 30.0%
! CTTGATATTGGAGAGAATTT+TGG + chr7_3:72467013-72467032 Msa1122150:intron 30.0%
! AATGCTGTTGATGCTTTTAT+AGG + chr7_3:72467039-72467058 Msa1122150:intron 30.0%
!!! GTAAACGGAAGTATTTTTAC+AGG - chr7_3:72467128-72467147 None:intergenic 30.0%
TTACTTCATAGAACATAACG+CGG + chr7_3:72467144-72467163 Msa1122150:intron 30.0%
! CAAAAAGAAAAGAGCACATA+AGG - chr7_3:72467249-72467268 None:intergenic 30.0%
! TATGTGCTCTTTTCTTTTTG+TGG + chr7_3:72467249-72467268 Msa1122150:intron 30.0%
CTCAAGATCTAACAACAAAT+CGG - chr7_3:72467328-72467347 None:intergenic 30.0%
! TTGTCATGATTTTGGATTTC+AGG + chr7_3:72467451-72467470 Msa1122150:intron 30.0%
! TGTCATGATTTTGGATTTCA+GGG + chr7_3:72467452-72467471 Msa1122150:intron 30.0%
AAATCCTAGAGATTGTTCAA+GGG - chr7_3:72467526-72467545 None:intergenic 30.0%
TACAAACAAATGCAACAAGT+TGG - chr7_3:72467754-72467773 None:intergenic 30.0%
!!! TACTTTTTTAAGGACTTCTC+TGG - chr7_3:72467785-72467804 None:intergenic 30.0%
GCTTTCATTTGATTAAACAC+TGG - chr7_3:72467909-72467928 None:intergenic 30.0%
!! TTAGGTGCTGATATTCAATT+TGG + chr7_3:72467942-72467961 Msa1122150:CDS 30.0%
!! TCAATTTGGTGCTTTAAGTA+AGG + chr7_3:72467956-72467975 Msa1122150:CDS 30.0%
TACAGAAGACAAGAATCAAA+TGG + chr7_3:72468238-72468257 Msa1122150:CDS 30.0%
CTGCAAAACAAAAATGAAGA+TGG - chr7_3:72468361-72468380 None:intergenic 30.0%
! TTTGTCTTTTGATCTTTCAC+TGG - chr7_3:72468400-72468419 None:intergenic 30.0%
AAAAGACAAATCGGATCAAA+AGG + chr7_3:72468410-72468429 Msa1122150:CDS 30.0%
ATTCTTCTTTCCATTCATTC+AGG + chr7_3:72468643-72468662 Msa1122150:intron 30.0%
!! TCTTTGTTGCTATTTCATTC+TGG + chr7_3:72468793-72468812 Msa1122150:intron 30.0%
AAAAATTCCTCCAAGTAGAA+GGG - chr7_3:72468983-72469002 None:intergenic 30.0%
! TTCTACTTGGAGGAATTTTT+CGG + chr7_3:72468983-72469002 Msa1122150:intron 30.0%
!!! AGAGTTAATGGATTTTGCAT+TGG - chr7_3:72469054-72469073 None:intergenic 30.0%
ATGCAAAATCCATTAACTCT+TGG + chr7_3:72469054-72469073 Msa1122150:intron 30.0%
GTCTTTAATCACACATATGA+TGG - chr7_3:72469294-72469313 None:intergenic 30.0%
CAAAAACGTCAACACAATTT+AGG - chr7_3:72469425-72469444 None:intergenic 30.0%
!! CTAAATTGTGTTGACGTTTT+TGG + chr7_3:72469423-72469442 Msa1122150:intron 30.0%
CTCAATTTGAAGATATCTAC+AGG + chr7_3:72469585-72469604 Msa1122150:CDS 30.0%
CCATAGAGAATAAACAAATG+AGG - chr7_3:72469738-72469757 None:intergenic 30.0%
CCTCATTTGTTTATTCTCTA+TGG + chr7_3:72469735-72469754 Msa1122150:intron 30.0%
GATAACGATTGATTAAGTGT+TGG + chr7_3:72469778-72469797 Msa1122150:intron 30.0%
! GTTATTCGTACATCTAAAAC+TGG + chr7_3:72469830-72469849 Msa1122150:intron 30.0%
ATCAACTGTTGTTCAGTTAA+AGG - chr7_3:72469893-72469912 None:intergenic 30.0%
TTTAACTGAACAACAGTTGA+TGG + chr7_3:72469892-72469911 Msa1122150:CDS 30.0%
TTAACTGAACAACAGTTGAT+GGG + chr7_3:72469893-72469912 Msa1122150:CDS 30.0%
GAAATAGACAGTTAATTACC+TGG - chr7_3:72470117-72470136 None:intergenic 30.0%
! TATCTCAACTTCCTTCTTTT+TGG + chr7_3:72470139-72470158 Msa1122150:intron 30.0%
GTTATTGAATGAAACTGTGT+CGG - chr7_3:72470203-72470222 None:intergenic 30.0%
GAATTAATTGTGTACCTTAG+AGG + chr7_3:72470333-72470352 Msa1122150:intron 30.0%
! TCCTTTTCCTTCATGTTTAT+AGG + chr7_3:72470478-72470497 Msa1122150:intron 30.0%
TTATCAGCCTATAAACATGA+AGG - chr7_3:72470488-72470507 None:intergenic 30.0%
! CAATAAGTGATTATTTCTCC+CGG + chr7_3:72470579-72470598 Msa1122150:CDS 30.0%
TGTATGATAGATAGAGTTGA+AGG + chr7_3:72470860-72470879 Msa1122150:three_prime_UTR 30.0%
GTATGATAGATAGAGTTGAA+GGG + chr7_3:72470861-72470880 Msa1122150:three_prime_UTR 30.0%
TATGATAGATAGAGTTGAAG+GGG + chr7_3:72470862-72470881 Msa1122150:three_prime_UTR 30.0%
TCAGAAATCAAGCTTATTTG+AGG + chr7_3:72470936-72470955 Msa1122150:three_prime_UTR 30.0%
AAATCAAGCTTATTTGAGGA+TGG + chr7_3:72470940-72470959 Msa1122150:three_prime_UTR 30.0%
! TTCAACTTTGTCACTTGCTT+AGG + chr7_3:72466052-72466071 Msa1122150:five_prime_UTR 35.0%
! TCAACTTTGTCACTTGCTTA+GGG + chr7_3:72466053-72466072 Msa1122150:five_prime_UTR 35.0%
AGAAACAAGAGATGGGAAAA+TGG - chr7_3:72466092-72466111 None:intergenic 35.0%
CAGAAAGAAGAAACAAGAGA+TGG - chr7_3:72466100-72466119 None:intergenic 35.0%
! CATCTCTTGTTTCTTCTTTC+TGG + chr7_3:72466098-72466117 Msa1122150:five_prime_UTR 35.0%
!!! TCAGCTTTGTTTTTACAAGG+TGG + chr7_3:72466201-72466220 Msa1122150:intron 35.0%
!!! CAGCTTTGTTTTTACAAGGT+GGG + chr7_3:72466202-72466221 Msa1122150:intron 35.0%
!! TTTGTTTCTAGGCAGTTGTA+CGG + chr7_3:72466305-72466324 Msa1122150:intron 35.0%
CAAACCTTAAATCCACAACA+AGG - chr7_3:72466553-72466572 None:intergenic 35.0%
! TGTTGTGGATTTAAGGTTTG+TGG + chr7_3:72466553-72466572 Msa1122150:five_prime_UTR 35.0%
GACACTAACAAGGTTGTTAA+CGG + chr7_3:72466633-72466652 Msa1122150:CDS 35.0%
ACACTAACAAGGTTGTTAAC+GGG + chr7_3:72466634-72466653 Msa1122150:CDS 35.0%
!!! GGTCTTGCTATTAATTTTGG+GGG + chr7_3:72466739-72466758 Msa1122150:intron 35.0%
TTATTGTAGGTGCTTCTAGA+TGG + chr7_3:72466779-72466798 Msa1122150:intron 35.0%
CATGAAAAAAATTGATGCCG+TGG + chr7_3:72467066-72467085 Msa1122150:intron 35.0%
! GTCATGATTTTGGATTTCAG+GGG + chr7_3:72467453-72467472 Msa1122150:intron 35.0%
CCAAAATCAGAAATTCGAGA+AGG - chr7_3:72467501-72467520 None:intergenic 35.0%
! CCTTCTCGAATTTCTGATTT+TGG + chr7_3:72467498-72467517 Msa1122150:CDS 35.0%
GAAATCCTAGAGATTGTTCA+AGG - chr7_3:72467527-72467546 None:intergenic 35.0%
CATACTTCTGCTAAGATTCA+TGG - chr7_3:72467562-72467581 None:intergenic 35.0%
AGTATAAGCACTAAGAACAC+AGG - chr7_3:72467683-72467702 None:intergenic 35.0%
AGGTTAATCGAGGATTCATA+AGG - chr7_3:72467860-72467879 None:intergenic 35.0%
TAAACACTGGATCTGAAAGA+TGG - chr7_3:72467896-72467915 None:intergenic 35.0%
AAAGCAAATAGCCAAGCTTT+AGG + chr7_3:72467924-72467943 Msa1122150:CDS 35.0%
TCTTCACTTGCATGAATGTA+CGG + chr7_3:72468043-72468062 Msa1122150:intron 35.0%
GTTTATATCCGAGTTTGCAA+TGG - chr7_3:72468075-72468094 None:intergenic 35.0%
CATACGGTTTATTCTGAATC+TGG + chr7_3:72468279-72468298 Msa1122150:intron 35.0%
!!! TTTTTGTTTTGCAGCCTGAA+AGG + chr7_3:72468367-72468386 Msa1122150:intron 35.0%
!!! TTTTGTTTTGCAGCCTGAAA+GGG + chr7_3:72468368-72468387 Msa1122150:intron 35.0%
! CTTTTGTTCAGACGTTAAGA+CGG + chr7_3:72468493-72468512 Msa1122150:intron 35.0%
AAATAGCAAAACAAACCTGC+TGG - chr7_3:72468739-72468758 None:intergenic 35.0%
ACCATTTCCACTCATTGAAT+GGG - chr7_3:72468896-72468915 None:intergenic 35.0%
TACCATTTCCACTCATTGAA+TGG - chr7_3:72468897-72468916 None:intergenic 35.0%
GAAAAATTCCTCCAAGTAGA+AGG - chr7_3:72468984-72469003 None:intergenic 35.0%
TTTGTCAAGCCAAGAGTTAA+TGG - chr7_3:72469066-72469085 None:intergenic 35.0%
GAAAATAGTAGTCTGTAGCA+TGG + chr7_3:72469359-72469378 Msa1122150:intron 35.0%
! GATGGTTAGAAGAGCATAAT+AGG + chr7_3:72469483-72469502 Msa1122150:CDS 35.0%
ATAGGCAAACCAATGAACTA+AGG + chr7_3:72469501-72469520 Msa1122150:CDS 35.0%
TAGGCAAACCAATGAACTAA+GGG + chr7_3:72469502-72469521 Msa1122150:CDS 35.0%
CTGCAATAAATTCTCATGCT+GGG + chr7_3:72469525-72469544 Msa1122150:CDS 35.0%
TGCAATAAATTCTCATGCTG+GGG + chr7_3:72469526-72469545 Msa1122150:CDS 35.0%
TGAAATTGTCGACAATGGTA+CGG - chr7_3:72469562-72469581 None:intergenic 35.0%
AGTCATGAAATTGTCGACAA+TGG - chr7_3:72469567-72469586 None:intergenic 35.0%
! GATGTTTTCCACATTCTATC+AGG + chr7_3:72469632-72469651 Msa1122150:CDS 35.0%
TACAGACACAAACACAACAA+CGG - chr7_3:72470259-72470278 None:intergenic 35.0%
GCCTATAAACATGAAGGAAA+AGG - chr7_3:72470482-72470501 None:intergenic 35.0%
AAACGTTGCAACAAATGCTT+CGG + chr7_3:72470519-72470538 Msa1122150:CDS 35.0%
! TTTGAAACAGTTTACTCCCT+TGG - chr7_3:72470638-72470657 None:intergenic 35.0%
ATGATAGATAGAGTTGAAGG+GGG + chr7_3:72470863-72470882 Msa1122150:three_prime_UTR 35.0%
! TGGTTTCTTTTCCTGCTTAA+TGG + chr7_3:72470975-72470994 Msa1122150:three_prime_UTR 35.0%
! TTTTCCTGCTTAATGGTTTG+TGG + chr7_3:72470982-72471001 Msa1122150:three_prime_UTR 35.0%
ATTGGCAACGAAATAGGTGT+CGG - chr7_3:72466356-72466375 None:intergenic 40.0%
!! AAGGCCTTGTTGTGGATTTA+AGG + chr7_3:72466546-72466565 Msa1122150:intron 40.0%
GGTCCTCAGAGAAATTTACA+TGG - chr7_3:72466688-72466707 None:intergenic 40.0%
!! GAAGTTAGGGTCTATTTTGG+TGG + chr7_3:72466889-72466908 Msa1122150:intron 40.0%
GCGGATACTAACCTTGATAT+TGG + chr7_3:72467001-72467020 Msa1122150:intron 40.0%
GAAAAAAATTGATGCCGTGG+TGG + chr7_3:72467069-72467088 Msa1122150:intron 40.0%
TAGATCTTGAGCATCCATGT+TGG + chr7_3:72467337-72467356 Msa1122150:intron 40.0%
AAGCTAAAAAGGGTCCAACA+TGG - chr7_3:72467354-72467373 None:intergenic 40.0%
!! ATCTCTAGGATTTCGTGTTG+AGG + chr7_3:72467533-72467552 Msa1122150:CDS 40.0%
! AGAAGTATGTCGCTCACATT+TGG + chr7_3:72467573-72467592 Msa1122150:intron 40.0%
GAATATCAGCACCTAAAGCT+TGG - chr7_3:72467938-72467957 None:intergenic 40.0%
! TCATGCAAGTGAAGAGTGTA+AGG - chr7_3:72468038-72468057 None:intergenic 40.0%
!!! TTTGTTTTGCAGCCTGAAAG+GGG + chr7_3:72468369-72468388 Msa1122150:intron 40.0%
TGTTTCTTCTGCATGCAATC+TGG + chr7_3:72468605-72468624 Msa1122150:intron 40.0%
TGCACATATGCCTGAATGAA+TGG - chr7_3:72468656-72468675 None:intergenic 40.0%
ACCCATTCAATGAGTGGAAA+TGG + chr7_3:72468892-72468911 Msa1122150:CDS 40.0%
ACATATCACGGCAAATGTCA+TGG - chr7_3:72469093-72469112 None:intergenic 40.0%
ATAGTAGTCTGTAGCATGGA+TGG + chr7_3:72469363-72469382 Msa1122150:intron 40.0%
TATTGCAGCCCTTAGTTCAT+TGG - chr7_3:72469513-72469532 None:intergenic 40.0%
GCTGCAATAAATTCTCATGC+TGG + chr7_3:72469524-72469543 Msa1122150:CDS 40.0%
GAAGATATCTACAGGCTGAA+AGG + chr7_3:72469593-72469612 Msa1122150:CDS 40.0%
TCCACATTCTATCAGGAATG+TGG + chr7_3:72469639-72469658 Msa1122150:CDS 40.0%
TCCACATTCCTGATAGAATG+TGG - chr7_3:72469643-72469662 None:intergenic 40.0%
TCGGTCATCTGAACTTCTTA+AGG + chr7_3:72469703-72469722 Msa1122150:CDS 40.0%
GCAGCTTCTTGTAAGTCATT+TGG + chr7_3:72469865-72469884 Msa1122150:intron 40.0%
TGAACCATTAGCCAATGTCT+CGG - chr7_3:72469999-72470018 None:intergenic 40.0%
TGGAAATGTGGCCAATTACA+TGG + chr7_3:72470039-72470058 Msa1122150:CDS 40.0%
GGAAATGTGGCCAATTACAT+GGG + chr7_3:72470040-72470059 Msa1122150:CDS 40.0%
AGCCATTTGTCCCATGTAAT+TGG - chr7_3:72470053-72470072 None:intergenic 40.0%
TTACATGGGACAAATGGCTA+TGG + chr7_3:72470054-72470073 Msa1122150:CDS 40.0%
! CTCAACTTCCTTCTTTTTGG+AGG + chr7_3:72470142-72470161 Msa1122150:intron 40.0%
GGATACACGGTATACAACAA+CGG - chr7_3:72470233-72470252 None:intergenic 40.0%
ACAACAACGGAATGGATACA+CGG - chr7_3:72470246-72470265 None:intergenic 40.0%
ACACAAACACAACAACGGAA+TGG - chr7_3:72470254-72470273 None:intergenic 40.0%
GTTTATAGGCTGATAACCTG+AGG + chr7_3:72470492-72470511 Msa1122150:intron 40.0%
ATGTTCTTTCTGCATGAAGC+TGG + chr7_3:72470667-72470686 Msa1122150:three_prime_UTR 40.0%
TGTTTACAAGCACCACAACT+AGG - chr7_3:72470728-72470747 None:intergenic 40.0%
TATTCTCCTCCACATACTAC+TGG + chr7_3:72470767-72470786 Msa1122150:three_prime_UTR 40.0%
TGTACTACACCAGTAGTATG+TGG - chr7_3:72470779-72470798 None:intergenic 40.0%
AGGAAAAGAAACCAAGAGAG+AGG - chr7_3:72470969-72470988 None:intergenic 40.0%
CAAGAGACATATCAACTGAC+TGG - chr7_3:72471070-72471089 None:intergenic 40.0%
!! TGTGTTTCAAGGCCTTGTTG+TGG + chr7_3:72466538-72466557 Msa1122150:intron 45.0%
! TGGTTATTGATGGGCAGTAG+AGG + chr7_3:72466597-72466616 Msa1122150:exon 45.0%
! GATTTTGGATTTCAGGGGCA+TGG + chr7_3:72467458-72467477 Msa1122150:intron 45.0%
AATAGTTGTTCCCCTCTCGA+TGG + chr7_3:72467832-72467851 Msa1122150:intron 45.0%
TTCATAAGGCTCCATCGAGA+GGG - chr7_3:72467846-72467865 None:intergenic 45.0%
ATTCATAAGGCTCCATCGAG+AGG - chr7_3:72467847-72467866 None:intergenic 45.0%
GGTACAGTCCATTGCAAACT+CGG + chr7_3:72468064-72468083 Msa1122150:intron 45.0%
AAAAGACGCGCTGCCAAATT+TGG + chr7_3:72468136-72468155 Msa1122150:CDS 45.0%
CCAGATGTCGAAGCCAAATT+TGG - chr7_3:72468152-72468171 None:intergenic 45.0%
! CCAAATTTGGCTTCGACATC+TGG + chr7_3:72468149-72468168 Msa1122150:CDS 45.0%
! AATTTGGCTTCGACATCTGG+CGG + chr7_3:72468152-72468171 Msa1122150:CDS 45.0%
!! TTGTTTTGCAGCCTGAAAGG+GGG + chr7_3:72468370-72468389 Msa1122150:intron 45.0%
GAAAAGCCGACTGAGGAAAA+AGG + chr7_3:72468542-72468561 Msa1122150:CDS 45.0%
! GCTGTACCTTTTTCCTCAGT+CGG - chr7_3:72468551-72468570 None:intergenic 45.0%
TGCAACAATTAGAGAGCAGC+AGG + chr7_3:72468672-72468691 Msa1122150:CDS 45.0%
CTGTAGCTCTTGCTCTAGTT+GGG - chr7_3:72468708-72468727 None:intergenic 45.0%
TCAAGCTTGCGTCACACAAT+TGG - chr7_3:72468938-72468957 None:intergenic 45.0%
GCATCAAAGTCCCTTCTACT+TGG + chr7_3:72468970-72468989 Msa1122150:intron 45.0%
TCAAAGTCCCTTCTACTTGG+AGG + chr7_3:72468973-72468992 Msa1122150:intron 45.0%
!!! TGTTGACGTTTTTGGTGTGC+AGG + chr7_3:72469431-72469450 Msa1122150:intron 45.0%
!! TTTTTGGTGTGCAGGTGCAA+TGG + chr7_3:72469439-72469458 Msa1122150:intron 45.0%
TTGATGCAGAATACGCACGA+TGG + chr7_3:72469465-72469484 Msa1122150:CDS 45.0%
!! GAGAGGTGTTTCATGTGGAT+TGG + chr7_3:72469674-72469693 Msa1122150:CDS 45.0%
!! AGGTGTTTCATGTGGATTGG+AGG + chr7_3:72469677-72469696 Msa1122150:CDS 45.0%
!! TCATGTGGATTGGAGGCTTT+CGG + chr7_3:72469684-72469703 Msa1122150:CDS 45.0%
GCAATCACTTTCCGAGACAT+TGG + chr7_3:72469985-72470004 Msa1122150:CDS 45.0%
! CTTTCCGAGACATTGGCTAA+TGG + chr7_3:72469992-72470011 Msa1122150:CDS 45.0%
!! CATTTCCAGAAGCACCTGAT+GGG - chr7_3:72470027-72470046 None:intergenic 45.0%
!! ACATTTCCAGAAGCACCTGA+TGG - chr7_3:72470028-72470047 None:intergenic 45.0%
! ATCAGGTGCTTCTGGAAATG+TGG + chr7_3:72470027-72470046 Msa1122150:CDS 45.0%
GGCCAATTACATGGGACAAA+TGG + chr7_3:72470048-72470067 Msa1122150:CDS 45.0%
!! AAGAGTACCAAGCTTTCCCA+TGG - chr7_3:72470080-72470099 None:intergenic 45.0%
GGAAAGCTTGGTACTCTTGA+GGG + chr7_3:72470082-72470101 Msa1122150:CDS 45.0%
GTAATGCATCTCACCCTCTA+AGG - chr7_3:72470350-72470369 None:intergenic 45.0%
! TGAGTTCTCTATGGCTTGCA+CGG + chr7_3:72470612-72470631 Msa1122150:CDS 45.0%
! TGCATGAAGCTGGTGTCTTT+TGG + chr7_3:72470677-72470696 Msa1122150:three_prime_UTR 45.0%
GTTGTGAAGAAGCCTAGTTG+TGG + chr7_3:72470713-72470732 Msa1122150:three_prime_UTR 45.0%
ACTACACCAGTAGTATGTGG+AGG - chr7_3:72470776-72470795 None:intergenic 45.0%
GCAACCACAAACCATTAAGC+AGG - chr7_3:72470989-72471008 None:intergenic 45.0%
!!! ATTTTGAAAATAAAAATAAA+AGG - chr7_3:72466228-72466247 None:intergenic 5.0%
!!! TTTTATTGTTTATTAATTAT+TGG + chr7_3:72466938-72466957 Msa1122150:intron 5.0%
!! TTTATTGTTTATTAATTATT+GGG + chr7_3:72466939-72466958 Msa1122150:intron 5.0%
AGCTGCTGAGGACACTAACA+AGG + chr7_3:72466623-72466642 Msa1122150:CDS 50.0%
! TTAGATGGAGGTGCGTAGCT+CGG - chr7_3:72466663-72466682 None:intergenic 50.0%
! TTTGGATTTCAGGGGCATGG+AGG + chr7_3:72467461-72467480 Msa1122150:intron 50.0%
! TTGGATTTCAGGGGCATGGA+GGG + chr7_3:72467462-72467481 Msa1122150:intron 50.0%
GGAGCCCTTGAACAATCTCT+AGG + chr7_3:72467519-72467538 Msa1122150:CDS 50.0%
TCATAAGGCTCCATCGAGAG+GGG - chr7_3:72467845-72467864 None:intergenic 50.0%
AACCTCTCTGCTGCAATTGC+TGG + chr7_3:72468092-72468111 Msa1122150:CDS 50.0%
ACCTCTCTGCTGCAATTGCT+GGG + chr7_3:72468093-72468112 Msa1122150:CDS 50.0%
ACTCTCCCCAATTCTCACGA+TGG - chr7_3:72468178-72468197 None:intergenic 50.0%
GAATTGGGGAGAGTCCAACA+TGG + chr7_3:72468184-72468203 Msa1122150:CDS 50.0%
! TGTTTTGCAGCCTGAAAGGG+GGG + chr7_3:72468371-72468390 Msa1122150:intron 50.0%
TGTTCAGACGTTAAGACGGC+TGG + chr7_3:72468497-72468516 Msa1122150:intron 50.0%
CTCAAAATCGTGAAGCTGCC+AGG + chr7_3:72468520-72468539 Msa1122150:CDS 50.0%
!! TTTCCTCAGTCGGCTTTTCC+TGG - chr7_3:72468541-72468560 None:intergenic 50.0%
GCTGTAGCTCTTGCTCTAGT+TGG - chr7_3:72468709-72468728 None:intergenic 50.0%
GAGCAGACCCATTCAATGAG+TGG + chr7_3:72468886-72468905 Msa1122150:CDS 50.0%
AGCTTGCGTCACACAATTGG+AGG - chr7_3:72468935-72468954 None:intergenic 50.0%
CACATGAAACACCTCTCAGC+TGG - chr7_3:72469671-72469690 None:intergenic 50.0%
!! CAGCTGAGAGGTGTTTCATG+TGG + chr7_3:72469669-72469688 Msa1122150:CDS 50.0%
AGACGCTCTTTCCCAAGGAA+TGG + chr7_3:72469952-72469971 Msa1122150:CDS 50.0%
CTGCAATGCGTCCATTCCTT+GGG - chr7_3:72469966-72469985 None:intergenic 50.0%
GGACAAATGGCTATGGCCAT+GGG + chr7_3:72470061-72470080 Msa1122150:CDS 50.0%
GGGAAAGCTTGGTACTCTTG+AGG + chr7_3:72470081-72470100 Msa1122150:CDS 50.0%
TCTTGAGGGATTTCTTCGCC+AGG + chr7_3:72470096-72470115 Msa1122150:CDS 50.0%
!! CTTCTTTTTGGAGGCGTGTC+CGG + chr7_3:72470151-72470170 Msa1122150:intron 50.0%
CACTCACACATGTCGAACAC+CGG - chr7_3:72470173-72470192 None:intergenic 50.0%
AAGAGCTCGAGCTGATTGTC+TGG - chr7_3:72470555-72470574 None:intergenic 50.0%
!! TGCGAGCTCTGAGTTCTCTA+TGG + chr7_3:72470603-72470622 Msa1122150:CDS 50.0%
GAGGATGGTTTCCTCTCTCT+TGG + chr7_3:72470955-72470974 Msa1122150:three_prime_UTR 50.0%
CAGTAGAGGTAGAGCTGCTG+AGG + chr7_3:72466611-72466630 Msa1122150:CDS 55.0%
TGCCGTGGTGGCACAAATCA+CGG + chr7_3:72467081-72467100 Msa1122150:intron 55.0%
! GACCGTGATTTGTGCCACCA+CGG - chr7_3:72467086-72467105 None:intergenic 55.0%
ACTGACAATTCGCGTCAGCG+AGG - chr7_3:72467183-72467202 None:intergenic 55.0%
ACCCAGCAATTGCAGCAGAG+AGG - chr7_3:72468097-72468116 None:intergenic 55.0%
TGGCGGCCATCGTGAGAATT+GGG + chr7_3:72468169-72468188 Msa1122150:CDS 55.0%
GGAGAGTCCAACATGGCTGA+GGG + chr7_3:72468191-72468210 Msa1122150:CDS 55.0%
TCACTGGATTCCCCCCTTTC+AGG - chr7_3:72468384-72468403 None:intergenic 55.0%
TGTGGAAGACTCCAGCTGAG+AGG + chr7_3:72469657-72469676 Msa1122150:CDS 55.0%
GCTGAAGACGCTCTTTCCCA+AGG + chr7_3:72469947-72469966 Msa1122150:CDS 55.0%
GCTGCAATGCGTCCATTCCT+TGG - chr7_3:72469967-72469986 None:intergenic 55.0%
GGGACAAATGGCTATGGCCA+TGG + chr7_3:72470060-72470079 Msa1122150:CDS 55.0%
GCTATGGCCATGGGAAAGCT+TGG + chr7_3:72470070-72470089 Msa1122150:CDS 55.0%
CGGACACGCCTCCAAAAAGA+AGG - chr7_3:72470153-72470172 None:intergenic 55.0%
! GTTGCAACGTTTGCTGCCTC+AGG - chr7_3:72470511-72470530 None:intergenic 55.0%
! TCTATGGCTTGCACGGCCAA+GGG + chr7_3:72470619-72470638 Msa1122150:CDS 55.0%
CTGGCGGCCATCGTGAGAAT+TGG + chr7_3:72468168-72468187 Msa1122150:CDS 60.0%
GGCGGCCATCGTGAGAATTG+GGG + chr7_3:72468170-72468189 Msa1122150:CDS 60.0%
GGGAGAGTCCAACATGGCTG+AGG + chr7_3:72468190-72468209 Msa1122150:CDS 60.0%
AGCGCTTCCCTCAGCCATGT+TGG - chr7_3:72468201-72468220 None:intergenic 60.0%
CTGCCAGGAAAAGCCGACTG+AGG + chr7_3:72468535-72468554 Msa1122150:CDS 60.0%
AGAACTCAGAGCTCGCAGCC+GGG - chr7_3:72470600-72470619 None:intergenic 60.0%
GAGAACTCAGAGCTCGCAGC+CGG - chr7_3:72470601-72470620 None:intergenic 60.0%
! CTCTATGGCTTGCACGGCCA+AGG + chr7_3:72470618-72470637 Msa1122150:CDS 60.0%
GCTACAGCGAGCACGCCAGC+AGG + chr7_3:72468721-72468740 Msa1122150:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 72466021 72471273 72466021 ID=Msa1122150;Name=Msa1122150
chr7_3 mRNA 72466021 72471273 72466021 ID=Msa1122150-mRNA-1;Parent=Msa1122150;Name=Msa1122150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=157|1|1|1|0.90|0.83|12|627|452
chr7_3 exon 72466021 72466120 72466021 ID=Msa1122150-mRNA-1:exon:18788;Parent=Msa1122150-mRNA-1
chr7_3 exon 72466549 72466688 72466549 ID=Msa1122150-mRNA-1:exon:18789;Parent=Msa1122150-mRNA-1
chr7_3 exon 72467473 72467576 72467473 ID=Msa1122150-mRNA-1:exon:18790;Parent=Msa1122150-mRNA-1
chr7_3 exon 72467904 72467977 72467904 ID=Msa1122150-mRNA-1:exon:18791;Parent=Msa1122150-mRNA-1
chr7_3 exon 72468071 72468259 72468071 ID=Msa1122150-mRNA-1:exon:18792;Parent=Msa1122150-mRNA-1
chr7_3 exon 72468381 72468431 72468381 ID=Msa1122150-mRNA-1:exon:18793;Parent=Msa1122150-mRNA-1
chr7_3 exon 72468504 72468563 72468504 ID=Msa1122150-mRNA-1:exon:18794;Parent=Msa1122150-mRNA-1
chr7_3 exon 72468665 72468742 72468665 ID=Msa1122150-mRNA-1:exon:18795;Parent=Msa1122150-mRNA-1
chr7_3 exon 72468862 72468913 72468862 ID=Msa1122150-mRNA-1:exon:18796;Parent=Msa1122150-mRNA-1
chr7_3 exon 72469453 72469724 72469453 ID=Msa1122150-mRNA-1:exon:18797;Parent=Msa1122150-mRNA-1
chr7_3 exon 72469869 72470117 72469869 ID=Msa1122150-mRNA-1:exon:18798;Parent=Msa1122150-mRNA-1
chr7_3 exon 72470500 72471273 72470500 ID=Msa1122150-mRNA-1:exon:18799;Parent=Msa1122150-mRNA-1
chr7_3 five_prime_UTR 72466021 72466120 72466021 ID=Msa1122150-mRNA-1:five_prime_utr;Parent=Msa1122150-mRNA-1
chr7_3 five_prime_UTR 72466549 72466605 72466549 ID=Msa1122150-mRNA-1:five_prime_utr;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72466606 72466688 72466606 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72467473 72467576 72467473 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72467904 72467977 72467904 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72468071 72468259 72468071 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72468381 72468431 72468381 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72468504 72468563 72468504 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72468665 72468742 72468665 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72468862 72468913 72468862 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72469453 72469724 72469453 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72469869 72470117 72469869 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 CDS 72470500 72470646 72470500 ID=Msa1122150-mRNA-1:cds;Parent=Msa1122150-mRNA-1
chr7_3 three_prime_UTR 72470647 72471273 72470647 ID=Msa1122150-mRNA-1:three_prime_utr;Parent=Msa1122150-mRNA-1
Gene Sequence

>Msa1122150

ATGGGCAGTAGAGGTAGAGCTGCTGAGGACACTAACAAGGTTGTTAACGGGATGCCGAGCTACGCACCTCCATCTAATTCCATGGGCATGGAGGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTTGAGGATGCCATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTTTAAGTAAGTCCATTGCAAACTCGGATATAAACCTCTCTGCTGCAATTGCTGGGTCTCAGACATTGCAATTACAAAAAGACGCGCTGCCAAATTTGGCTTCGACATCTGGCGGCCATCGTGAGAATTGGGGAGAGTCCAACATGGCTGAGGGAAGCGCTGATACTTCAACAGATGATACAGAAGACAAGAATCAAATGCCTGAAAGGGGGGAATCCAGTGAAAGATCAAAAGACAAATCGGATCAAAAGACGTTAAGACGGCTGGCTCAAAATCGTGAAGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGCAGGCTGAAACTAACCCAACTAGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGAATATTTATTTCAAGTACTGGAGAGCAGACCCATTCAATGAGTGGAAATGGTGCAATGGCATTTGATGCAGAATACGCACGATGGTTAGAAGAGCATAATAGGCAAACCAATGAACTAAGGGCTGCAATAAATTCTCATGCTGGGGATATTGAACTCCGTACCATTGTCGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCTGAACTTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACTGAACAACAGTTGATGGGTATCTACAACTTGCAACAGTCATCTCAACAAGCTGAAGACGCTCTTTCCCAAGGAATGGACGCATTGCAGCAATCACTTTCCGAGACATTGGCTAATGGTTCACCCAACCCATCAGGTGCTTCTGGAAATGTGGCCAATTACATGGGACAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGATTTCTTCGCCAGGCTGATAACCTGAGGCAGCAAACGTTGCAACAAATGCTTCGGATATTAACAACCAGACAATCAGCTCGAGCTCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCTCTGAGTTCTCTATGGCTTGCACGGCCAAGGGAGTAA

Protein sequence

>Msa1122150

MGSRGRAAEDTNKVVNGMPSYAPPSNSMGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQLQKDALPNLASTSGGHRENWGESNMAEGSADTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGASGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE*