AlfalfaGEDB | Msa0403490

M. sativa cultivar zhongmu-4 / Msa0403490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593
PFAM: PF12174.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403490	XP_013457813.1	96.405	306	9	1	1	306	1	304	0.0	608

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403490	sp\|Q9FJJ3\|SRO5_ARATH	41.975	243	122	6	68	301	70	302	2.74e-53	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403490	A0A072UPT7	96.405	306	9	1	1	306	1	304	0.0	608

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0403490	0.843526	1.327098e-58	-8.615850e-47
Msa0003220	Msa0403490	0.817823	2.699669e-52	-8.615850e-47
Msa0003630	Msa0403490	0.829445	5.126671e-55	-8.615850e-47
Msa0005270	Msa0403490	0.819211	1.308451e-52	-8.615850e-47
Msa0008220	Msa0403490	0.815274	1.005339e-51	-8.615850e-47
Msa0009100	Msa0403490	0.817541	3.126277e-52	-8.615850e-47
Msa0010770	Msa0403490	0.843108	1.715800e-58	-8.615850e-47
Msa0010800	Msa0403490	0.837564	4.825171e-57	-8.615850e-47
Msa0012710	Msa0403490	0.863669	2.111145e-64	-8.615850e-47
Msa0015090	Msa0403490	0.837517	4.959756e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403490	MtrunA17_Chr4g0059061	96.405	306	9	1	1	306	1	304	0.0	608
Msa0403490	MtrunA17_Chr3g0117631	48.852	305	139	5	13	306	15	313	1.09e-96	290
Msa0403490	MtrunA17_Chr8g0380321	37.594	266	152	6	43	299	19	279	3.74e-53	177
Msa0403490	MtrunA17_Chr1g0210871	32.698	315	154	11	46	320	273	569	5.93e-41	150
Msa0403490	MtrunA17_Chr5g0412301	31.229	301	159	9	46	305	266	559	4.40e-36	137
Msa0403490	MtrunA17_Chr5g0410781	35.294	187	106	6	43	220	59	239	5.44e-30	115
Msa0403490	MtrunA17_Chr7g0217951	34.946	186	102	7	46	220	249	426	3.94e-26	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403490	AT5G62520.1	41.975	243	122	6	68	301	70	302	2.79e-54	181
Msa0403490	AT1G23550.1	37.407	270	150	5	48	305	56	318	1.02e-53	179
Msa0403490	AT3G47720.1	40.891	247	124	6	68	305	78	311	1.96e-51	173
Msa0403490	AT1G70440.2	31.908	304	174	9	15	303	19	304	1.95e-44	155
Msa0403490	AT1G70440.1	31.908	304	174	9	15	303	19	304	1.95e-44	155
Msa0403490	AT1G32230.1	30.702	342	179	10	11	303	235	567	1.96e-39	147
Msa0403490	AT1G32230.3	30.205	341	181	9	11	303	235	566	6.95e-39	145
Msa0403490	AT1G32230.6	30.205	341	181	9	11	303	235	566	1.01e-38	145
Msa0403490	AT1G32230.4	30.205	341	181	9	11	303	235	566	1.01e-38	145
Msa0403490	AT1G32230.2	30.205	341	181	9	11	303	235	566	1.01e-38	145

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Find 83 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAATCTGCTTCGGATT+AGG	0.308031	3_2:+33741821	None:intergenic
AAACGGTAATGGCACAAGCG+AGG	0.659734	3_2:-33741738	Msa0403490:CDS
AAAGCGCAGAAATCAGAGTC+GGG	0.547882	3_2:+33740976	None:intergenic
AAATTGGAGGCTGTGCCTGC+AGG	0.495226	3_2:-33741300	Msa0403490:CDS
AACCACAAACGAATCTGCTT+CGG	0.446185	3_2:+33741815	None:intergenic
AAGGATAGTTCGGAAGACGA+CGG	0.711418	3_2:-33741860	Msa0403490:CDS
AATCGCTGATTCATCTTCGC+CGG	0.558062	3_2:+33741924	None:intergenic
AATGTGAAACACGTGTGGTA+CGG	0.653048	3_2:-33741658	Msa0403490:CDS
AATTGCATAAAAGGCGAAGA+CGG	0.562424	3_2:+33740999	None:intergenic
ACGATTCCCGAAGGATAGTT+CGG	0.498656	3_2:-33741870	Msa0403490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTCGGTAAATTGTAGAT+TGG	+	chr3_2:33737972-33737991	None:intergenic	30.0%
TTTCAGGAATCCTTGTAAAA+CGG	-	chr3_2:33738169-33738188	Msa0403490:intron	30.0%
TTTGGTTATGTTCATAGCAA+TGG	-	chr3_2:33738332-33738351	Msa0403490:intron	30.0%
GAATCATATTCTTCTGAACT+CGG	+	chr3_2:33738666-33738685	None:intergenic	30.0%
AGTTCAGAAGAATATGATTC+TGG	-	chr3_2:33738666-33738685	Msa0403490:intron	30.0%
CAAAAAGTTAGAAAAGTTGC+AGG	-	chr3_2:33739162-33739181	Msa0403490:intron	30.0%
TATCAAATCTTTCAGAGCAA+AGG	-	chr3_2:33739206-33739225	Msa0403490:intron	30.0%
TGTTAAGAATTTAGACATGC+TGG	-	chr3_2:33739269-33739288	Msa0403490:intron	30.0%
TTTCAATAGAATTTAGGGGA+GGG	+	chr3_2:33739369-33739388	None:intergenic	30.0%
ATTTCAATAGAATTTAGGGG+AGG	+	chr3_2:33739370-33739389	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	33737960	33741986	33737960	ID=Msa0403490;Name=Msa0403490
chr3_2	mRNA	33737960	33741986	33737960	ID=Msa0403490-mRNA-1;Parent=Msa0403490;Name=Msa0403490-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0.5\|0.6\|0.8\|1\|1\|5\|0\|347
chr3_2	exon	33741550	33741986	33741550	ID=Msa0403490-mRNA-1:exon:6641;Parent=Msa0403490-mRNA-1
chr3_2	exon	33741151	33741389	33741151	ID=Msa0403490-mRNA-1:exon:6640;Parent=Msa0403490-mRNA-1
chr3_2	exon	33740917	33741059	33740917	ID=Msa0403490-mRNA-1:exon:6639;Parent=Msa0403490-mRNA-1
chr3_2	exon	33740719	33740814	33740719	ID=Msa0403490-mRNA-1:exon:6638;Parent=Msa0403490-mRNA-1
chr3_2	exon	33737960	33738088	33737960	ID=Msa0403490-mRNA-1:exon:6637;Parent=Msa0403490-mRNA-1
chr3_2	CDS	33741550	33741986	33741550	ID=Msa0403490-mRNA-1:cds;Parent=Msa0403490-mRNA-1
chr3_2	CDS	33741151	33741389	33741151	ID=Msa0403490-mRNA-1:cds;Parent=Msa0403490-mRNA-1
chr3_2	CDS	33740917	33741059	33740917	ID=Msa0403490-mRNA-1:cds;Parent=Msa0403490-mRNA-1
chr3_2	CDS	33740719	33740814	33740719	ID=Msa0403490-mRNA-1:cds;Parent=Msa0403490-mRNA-1
chr3_2	CDS	33737960	33738088	33737960	ID=Msa0403490-mRNA-1:cds;Parent=Msa0403490-mRNA-1

Gene Sequence

>Msa0403490

ATGGAACAACCAATCTACAATTTACCGAAACATGATTCCGCCGGCGAAGATGAATCAGCGATTTCCGATTGCGAGAGTGTCGCATCCGGCGGCCACGATTCCCGAAGGATAGTTCGGAAGACGACGGAGGGTGCAGATATCAACCTAATCCGAAGCAGATTCGTTTGTGGTTTAAGTGCGCAAGGGTTGAAACCCTATGGAGTAGCGATTTTCAGGAATCCTTGTAAAACGGTAATGGCACAAGCGAGGATTCAATCGTTTGAGATCTTCGCACGTGCGGTGGCTAAAATGCGCGGTGGGAATGCTAATGTGAAACACGTGTGGTACGGTGCTTCGAGTAGAGAAGAGATTGTTGATATTATTCAACACGGTTTTGGTTATGTTCATAGCAATGGATTGCGTCTTTCTCCAAACGATTCTCCACTTGAAAGGCACGATGTGAAAAGAACTGTTGTTGACGAACAAGGTTTTAGGCACTTGTTGCTTTGTCGTGTGATCATGGGAAAATTGGAGGCTGTGCCTGCAGGTTCTGATCAACGCAGACCGAGTTCAGAAGAATATGATTCTGGAGTGGATAGTTTTTCATCTCCCAAAGAGTTCATTGTTTGGAGTAACAAGATCAACACGCATGTCTTGCCTGAATATGTTATGAGTTTCAAACTTGCTTCCGACAAAGGACATGAGAAGGTTGGAGTTGGAGGGCAACATGTGAGACCGTCTTCGCCTTTTATGCAATTCCCGACTCTGATTTCTGCGCTTTCGAAGATATTGCCTCCATCTGATATTGTTTCCATTGCCAAGTTTCACAAGGAGTATAGGGATAAGAAGATTTCGCGACATGAAATGATACAAAAAGTTAGAAAAGTTGCAGGTGACAAATTGTTGTTTTCTGTTATCAAATCTTTCAGAGCAAAGAGGGGTGGCAAGATTGACGGCGTGAAGAGGAGGAAGTTGAGTAGCAAGAAAGTTGATGGAGCGTATTATAATGAGTCATCAAGAGTAAGACCCAAAAGGGCTATGGATTCCATGAGTCGAATGCAATGA

Protein sequence

>Msa0403490

MEQPIYNLPKHDSAGEDESAISDCESVASGGHDSRRIVRKTTEGADINLIRSRFVCGLSAQGLKPYGVAIFRNPCKTVMAQARIQSFEIFARAVAKMRGGNANVKHVWYGASSREEIVDIIQHGFGYVHSNGLRLSPNDSPLERHDVKRTVVDEQGFRHLLLCRVIMGKLEAVPAGSDQRRPSSEEYDSGVDSFSSPKEFIVWSNKINTHVLPEYVMSFKLASDKGHEKVGVGGQHVRPSSPFMQFPTLISALSKILPPSDIVSIAKFHKEYRDKKISRHEMIQKVRKVAGDKLLFSVIKSFRAKRGGKIDGVKRRKLSSKKVDGAYYNESSRVRPKRAMDSMSRMQ*