AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035930 MtrunA17_Chr1g0198351 94.012 334 20 0 15 348 23 356 0.0 662
Msa0035930 MtrunA17_Chr1g0198381 66.456 316 104 2 34 348 1 315 5.63e-160 450
Msa0035930 MtrunA17_Chr1g0198391 60.511 352 105 3 18 342 16 360 4.29e-154 437
Msa0035930 MtrunA17_Chr1g0198401 63.740 262 94 1 82 342 8 269 3.84e-125 360
Msa0035930 MtrunA17_Chr7g0266061 48.544 309 147 5 35 336 42 345 9.43e-106 314
Msa0035930 MtrunA17_Chr1g0178931 47.403 308 151 4 35 336 37 339 1.41e-102 305
Msa0035930 MtrunA17_Chr1g0178941 43.302 321 163 6 30 336 35 350 2.86e-88 269
Msa0035930 MtrunA17_Chr1g0198361 63.910 133 45 2 141 270 3 135 2.74e-51 168
Msa0035930 MtrunA17_Chr1g0178961 36.279 215 130 3 124 336 1 210 2.80e-45 154
Msa0035930 MtrunA17_Chr8g0349341 28.657 335 206 8 10 327 20 338 4.24e-31 120
Msa0035930 MtrunA17_Chr1g0178951 56.250 96 35 2 30 118 12 107 2.04e-30 112
Msa0035930 MtrunA17_Chr8g0344941 26.444 329 208 10 36 340 42 360 3.01e-30 118
Msa0035930 MtrunA17_Chr8g0344931 29.358 327 184 12 21 325 31 332 1.21e-29 116
Msa0035930 MtrunA17_Chr8g0349321 28.435 313 195 11 34 327 36 338 1.09e-28 114
Msa0035930 MtrunA17_Chr1g0182811 28.750 320 189 11 33 325 31 338 2.41e-28 113
Msa0035930 MtrunA17_Chr5g0432101 27.324 355 219 15 10 336 8 351 3.24e-28 112
Msa0035930 MtrunA17_Chr7g0275021 29.412 323 175 16 36 325 35 337 3.47e-27 110
Msa0035930 MtrunA17_Chr5g0420811 28.923 325 187 13 24 325 22 325 1.62e-26 107
Msa0035930 MtrunA17_Chr3g0099231 28.000 325 178 14 36 325 29 332 1.93e-26 108
Msa0035930 MtrunA17_Chr1g0198411 72.059 68 18 1 18 85 16 82 3.45e-26 100
Msa0035930 MtrunA17_Chr1g0156921 29.912 341 199 15 30 343 37 364 5.52e-26 106
Msa0035930 MtrunA17_Chr1g0189891 30.818 318 172 18 36 325 30 327 2.44e-25 104
Msa0035930 MtrunA17_Chr2g0294301 29.338 317 182 14 37 325 37 339 2.67e-25 104
Msa0035930 MtrunA17_Chr3g0085231 30.449 312 174 9 36 325 32 322 3.35e-25 104
Msa0035930 MtrunA17_Chr1g0189931 27.760 317 192 14 36 327 33 337 6.80e-25 103
Msa0035930 MtrunA17_Chr4g0017431 27.607 326 185 13 36 329 32 338 7.39e-25 103
Msa0035930 MtrunA17_Chr7g0275001 27.273 352 206 17 1 325 1 329 1.80e-24 102
Msa0035930 MtrunA17_Chr7g0275011 26.899 316 192 13 36 325 35 337 2.16e-24 102
Msa0035930 MtrunA17_Chr4g0068441 27.554 323 180 13 37 325 37 339 2.80e-24 102
Msa0035930 MtrunA17_Chr8g0374101 27.673 318 192 13 37 325 39 347 3.09e-24 102
Msa0035930 MtrunA17_Chr2g0301641 25.559 313 202 11 36 325 44 348 3.79e-24 102
Msa0035930 MtrunA17_Chr2g0294311 28.882 322 185 14 36 324 33 343 5.38e-24 101
Msa0035930 MtrunA17_Chr1g0189901 26.266 316 194 13 36 325 32 334 1.62e-23 99.8
Msa0035930 MtrunA17_Chr1g0156931 27.515 338 209 13 30 343 36 361 1.87e-23 99.8
Msa0035930 MtrunA17_Chr2g0283191 24.348 345 209 15 36 343 39 368 4.07e-23 99.0
Msa0035930 MtrunA17_Chr7g0254461 26.727 333 198 11 36 328 44 370 6.64e-23 98.6
Msa0035930 MtrunA17_Chr7g0226911 25.893 336 198 13 36 328 36 363 1.56e-22 97.4
Msa0035930 MtrunA17_Chr1g0156911 29.063 320 191 13 30 325 32 339 1.59e-22 97.1
Msa0035930 MtrunA17_Chr3g0099151 29.412 323 178 16 36 325 88 393 1.68e-22 97.8
Msa0035930 MtrunA17_Chr8g0352901 24.620 329 206 9 36 328 29 351 3.66e-22 96.3
Msa0035930 MtrunA17_Chr8g0370951 29.467 319 185 14 36 325 32 339 4.35e-22 95.9
Msa0035930 MtrunA17_Chr3g0142921 29.321 324 192 14 30 328 31 342 4.72e-22 95.5
Msa0035930 MtrunA17_Chr8g0371491 26.829 328 197 14 29 328 30 342 8.09e-22 95.1
Msa0035930 MtrunA17_Chr5g0434621 27.707 314 192 10 34 324 24 325 8.34e-22 94.7
Msa0035930 MtrunA17_Chr3g0099161 27.950 322 183 15 36 325 93 397 8.64e-22 95.5
Msa0035930 MtrunA17_Chr3g0077571 26.543 324 198 10 26 325 21 328 1.25e-21 94.4
Msa0035930 MtrunA17_Chr2g0285001 25.949 316 194 11 36 328 34 332 1.61e-21 94.4
Msa0035930 MtrunA17_Chr2g0320671 27.187 320 186 12 36 325 31 333 1.86e-21 94.0
Msa0035930 MtrunA17_Chr1g0156901 28.402 338 205 12 30 342 45 370 1.92e-21 94.0
Msa0035930 MtrunA17_Chr3g0131321 26.994 326 182 12 36 325 35 340 2.54e-21 94.0
Msa0035930 MtrunA17_Chr7g0215961 25.000 316 185 12 36 325 34 323 3.13e-21 93.2
Msa0035930 MtrunA17_Chr7g0274991 28.923 325 174 16 35 324 33 335 3.17e-21 93.6
Msa0035930 MtrunA17_Chr1g0160031 25.610 328 206 11 27 322 31 352 3.24e-21 93.6
Msa0035930 MtrunA17_Chr7g0226931 25.648 347 196 14 36 328 39 377 3.37e-21 93.6
Msa0035930 MtrunA17_Chr3g0085881 26.433 314 183 12 36 325 34 323 6.18e-21 92.4
Msa0035930 MtrunA17_Chr3g0077581 28.135 327 177 13 36 325 37 342 1.10e-20 92.0
Msa0035930 MtrunA17_Chr4g0060811 26.115 314 199 9 37 327 29 332 1.82e-20 91.3
Msa0035930 MtrunA17_Chr8g0349301 30.736 231 139 7 34 247 36 262 1.82e-20 90.5
Msa0035930 MtrunA17_Chr1g0159991 26.506 332 200 12 27 322 28 351 3.25e-20 90.9
Msa0035930 MtrunA17_Chr3g0092131 25.723 311 198 10 37 324 25 325 6.26e-20 89.7
Msa0035930 MtrunA17_Chr2g0284921 26.837 313 187 10 36 324 35 329 8.36e-20 89.4
Msa0035930 MtrunA17_Chr7g0275291 23.765 324 205 12 36 325 34 349 1.46e-19 89.0
Msa0035930 MtrunA17_Chr6g0457921 25.846 325 185 13 36 325 30 333 1.49e-19 88.6
Msa0035930 MtrunA17_Chr8g0349331 28.053 303 175 12 36 327 36 306 2.15e-19 87.8
Msa0035930 MtrunA17_Chr8g0380031 26.923 312 186 12 36 325 85 376 2.36e-19 88.6
Msa0035930 MtrunA17_Chr5g0438621 26.959 319 188 14 36 325 31 333 2.48e-19 87.8
Msa0035930 MtrunA17_Chr2g0285061 26.807 332 174 13 37 327 34 337 2.87e-19 87.8
Msa0035930 MtrunA17_Chr5g0405821 25.994 327 203 14 29 328 37 351 3.40e-19 87.4
Msa0035930 MtrunA17_Chr3g0105401 27.215 316 192 14 36 325 29 332 3.76e-19 87.4
Msa0035930 MtrunA17_Chr1g0159981 25.301 332 204 12 27 322 38 361 4.86e-19 87.4
Msa0035930 MtrunA17_Chr4g0008851 27.329 322 185 16 36 325 33 337 5.32e-19 87.0
Msa0035930 MtrunA17_Chr3g0142941 26.786 336 201 13 36 342 48 367 5.54e-19 87.0
Msa0035930 MtrunA17_Chr1g0160101 23.193 332 216 9 25 322 32 358 6.58e-19 87.0
Msa0035930 MtrunA17_Chr7g0226941 24.398 332 204 11 36 328 34 357 7.40e-19 86.7
Msa0035930 MtrunA17_Chr5g0405831 25.994 327 202 11 29 328 37 350 7.62e-19 86.7
Msa0035930 MtrunA17_Chr1g0157001 24.773 331 209 11 40 348 41 353 7.90e-19 86.7
Msa0035930 MtrunA17_Chr8g0341001 26.899 316 193 13 36 325 33 336 1.49e-18 85.5
Msa0035930 MtrunA17_Chr8g0381581 24.096 332 207 11 36 328 41 366 2.28e-18 85.5
Msa0035930 MtrunA17_Chr2g0284991 26.480 321 185 16 36 328 34 331 2.28e-18 85.5
Msa0035930 MtrunA17_Chr5g0438631 25.767 326 199 13 29 325 21 332 2.70e-18 84.7
Msa0035930 MtrunA17_Chr3g0086641 26.814 317 192 10 37 327 40 342 3.33e-18 84.7
Msa0035930 MtrunA17_Chr1g0160011 24.398 332 205 10 27 322 32 353 3.40e-18 84.7
Msa0035930 MtrunA17_Chr5g0396511 26.101 318 188 14 37 324 48 348 3.45e-18 84.7
Msa0035930 MtrunA17_Chr6g0450731 24.522 314 201 8 36 325 34 335 3.57e-18 84.7
Msa0035930 MtrunA17_Chr5g0437421 25.444 338 208 12 21 328 20 343 4.28e-18 84.3
Msa0035930 MtrunA17_Chr4g0057991 26.036 338 209 13 35 341 39 366 6.30e-18 84.0
Msa0035930 MtrunA17_Chr6g0450701 24.540 326 205 10 36 328 40 357 7.79e-18 83.6
Msa0035930 MtrunA17_Chr6g0450711 23.333 330 213 8 30 325 112 435 1.11e-17 84.0
Msa0035930 MtrunA17_Chr1g0156891 27.385 325 197 12 30 328 38 349 1.71e-17 82.8
Msa0035930 MtrunA17_Chr8g0371481 27.301 326 201 14 28 328 34 348 2.52e-17 82.0
Msa0035930 MtrunA17_Chr2g0284951 24.920 313 191 11 36 325 34 325 4.92e-17 81.3
Msa0035930 MtrunA17_Chr5g0438641 26.498 317 192 15 36 325 33 335 7.20e-17 80.9
Msa0035930 MtrunA17_Chr8g0370981 26.385 379 203 18 36 348 45 413 1.94e-16 80.1
Msa0035930 MtrunA17_Chr7g0271551 23.248 314 213 8 36 328 37 343 5.52e-16 78.2
Msa0035930 MtrunA17_Chr2g0330781 24.771 327 204 12 27 325 23 335 1.18e-15 77.0
Msa0035930 MtrunA17_Chr5g0444401 24.768 323 192 13 36 325 29 333 1.31e-15 77.0
Msa0035930 MtrunA17_Chr3g0120861 24.405 336 214 17 36 344 39 361 1.64e-15 76.6
Msa0035930 MtrunA17_Chr6g0450721 23.659 317 202 8 36 327 34 335 4.65e-15 75.5
Msa0035930 MtrunA17_Chr8g0371471 25.231 325 208 11 28 328 34 347 1.12e-14 74.3
Msa0035930 MtrunA17_Chr8g0339251 23.288 292 199 7 36 308 29 314 1.23e-14 73.9
Msa0035930 MtrunA17_Chr3g0104821 24.924 329 201 16 36 328 45 363 1.02e-12 68.6
Msa0035930 MtrunA17_Chr2g0284941 22.642 318 188 12 36 332 34 314 2.60e-12 67.0
Msa0035930 MtrunA17_Chr2g0301581 22.849 337 202 15 30 331 26 339 1.16e-11 65.1
Msa0035930 MtrunA17_Chr3g0112821 23.529 340 207 13 29 331 21 344 1.56e-11 64.7
Msa0035930 MtrunA17_Chr2g0301541 22.849 337 202 15 30 331 26 339 1.57e-11 64.7
Msa0035930 MtrunA17_Chr1g0189921 42.697 89 44 3 35 116 31 119 6.35e-11 60.1
Msa0035930 MtrunA17_Chr2g0317271 23.438 320 202 13 36 328 31 334 8.26e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035930 AT5G03610.1 44.868 341 180 5 5 339 14 352 3.13e-106 315
Msa0035930 AT3G09930.2 43.544 333 180 5 17 342 21 352 1.68e-97 293
Msa0035930 AT3G09930.1 43.544 333 180 5 17 342 21 352 1.68e-97 293
Msa0035930 AT2G36325.1 40.193 311 169 7 35 335 47 350 1.70e-71 226
Msa0035930 AT5G03600.1 33.542 319 193 8 35 345 14 321 1.59e-62 202
Msa0035930 AT5G03600.2 32.738 336 207 8 18 345 32 356 2.62e-62 203
Msa0035930 AT5G03590.3 31.987 297 147 8 54 341 7 257 2.19e-47 161
Msa0035930 AT5G03590.1 28.475 295 129 8 54 341 7 226 3.54e-37 134
Msa0035930 AT1G53920.1 26.647 334 216 12 15 328 30 354 3.03e-32 124
Msa0035930 AT5G41890.1 28.125 320 193 11 37 325 33 346 1.42e-30 120
Msa0035930 AT5G03590.2 40.223 179 97 6 17 187 17 193 2.34e-29 112
Msa0035930 AT1G20120.1 28.116 345 183 13 21 328 68 384 3.89e-29 116
Msa0035930 AT2G40250.1 30.312 320 186 12 36 328 37 346 6.03e-29 115
Msa0035930 AT1G06990.1 25.688 327 203 11 36 335 38 351 6.70e-28 112
Msa0035930 AT1G54030.1 25.312 320 215 9 36 347 53 356 8.77e-28 112
Msa0035930 AT2G03980.2 27.300 337 204 15 36 345 44 366 4.50e-27 110
Msa0035930 AT2G03980.3 27.300 337 204 15 36 345 44 366 4.50e-27 110
Msa0035930 AT2G03980.1 27.300 337 204 15 36 345 44 366 4.50e-27 110
Msa0035930 AT2G03980.4 27.300 337 204 15 36 345 44 366 4.50e-27 110
Msa0035930 AT5G18430.1 29.595 321 179 16 36 325 29 333 2.02e-26 108
Msa0035930 AT1G75890.2 29.321 324 193 14 30 328 42 354 6.61e-26 107
Msa0035930 AT1G75890.3 29.321 324 193 14 30 328 71 383 8.40e-26 107
Msa0035930 AT1G20130.2 28.399 331 195 13 36 335 185 504 1.36e-25 107
Msa0035930 AT1G20130.1 28.399 331 195 13 36 335 205 524 1.49e-25 107
Msa0035930 AT1G71120.1 26.266 316 195 10 36 328 32 332 2.20e-25 105
Msa0035930 AT1G71691.2 27.157 313 191 8 36 325 56 354 9.85e-25 103
Msa0035930 AT5G33370.1 27.778 324 189 14 31 325 26 333 1.41e-24 103
Msa0035930 AT1G20132.1 26.769 325 206 12 29 331 55 369 1.98e-24 103
Msa0035930 AT3G50400.1 27.019 322 190 14 37 325 36 345 3.92e-24 102
Msa0035930 AT1G75890.1 28.190 337 193 14 30 328 42 367 5.32e-24 101
Msa0035930 AT4G10950.2 26.923 312 195 11 36 324 72 373 6.64e-24 102
Msa0035930 AT5G45960.1 26.946 334 195 16 36 336 48 365 9.45e-24 100
Msa0035930 AT5G45950.1 26.380 326 189 14 32 328 37 340 1.76e-23 100
Msa0035930 AT1G20135.1 28.213 319 184 13 36 331 30 326 2.21e-23 99.4
Msa0035930 AT1G54000.1 24.925 333 222 11 30 347 31 350 2.62e-23 100
Msa0035930 AT1G54020.2 25.228 329 221 10 30 347 28 342 3.09e-23 99.8
Msa0035930 AT4G28780.1 27.019 322 195 14 31 325 26 334 3.88e-23 99.4
Msa0035930 AT3G14210.1 24.615 325 223 10 33 344 34 349 3.96e-23 99.4
Msa0035930 AT1G59406.1 28.834 326 188 14 30 328 25 333 4.56e-23 98.6
Msa0035930 AT1G59030.1 28.834 326 188 14 30 328 25 333 4.56e-23 98.6
Msa0035930 AT1G58725.1 28.834 326 188 14 30 328 25 333 4.56e-23 98.6
Msa0035930 AT5G42170.1 27.515 338 212 12 12 328 28 353 4.88e-23 99.0
Msa0035930 AT2G23540.1 27.329 322 188 14 37 325 50 358 6.63e-23 99.0
Msa0035930 AT1G54030.2 26.667 255 168 8 36 282 53 296 7.57e-23 97.4
Msa0035930 AT5G33370.2 29.278 263 152 11 31 263 26 284 2.27e-22 96.7
Msa0035930 AT1G71691.3 28.571 252 161 5 35 267 55 306 2.64e-22 95.9
Msa0035930 AT1G54010.1 24.398 332 231 10 27 347 28 350 4.11e-22 96.7
Msa0035930 AT3G14820.1 30.838 334 189 17 21 328 17 334 8.88e-22 95.1
Msa0035930 AT1G58520.3 29.063 320 176 14 36 328 31 326 9.13e-22 95.1
Msa0035930 AT1G58525.1 29.063 320 176 14 36 328 31 326 9.13e-22 95.1
Msa0035930 AT4G10950.1 26.603 312 192 13 36 324 72 369 1.09e-21 95.5
Msa0035930 AT1G71250.1 26.852 324 182 13 36 325 42 344 2.50e-21 94.4
Msa0035930 AT2G04570.1 27.812 320 184 13 36 325 29 331 5.32e-21 92.8
Msa0035930 AT5G37690.1 26.708 322 197 11 31 327 23 330 6.84e-21 92.8
Msa0035930 AT5G55050.1 28.037 321 187 13 36 325 40 347 8.82e-21 92.8
Msa0035930 AT2G19060.1 26.791 321 174 12 37 325 32 323 1.25e-20 92.0
Msa0035930 AT5G45910.1 27.711 332 199 10 36 331 31 357 2.07e-20 91.7
Msa0035930 AT5G08460.1 25.545 321 194 12 36 325 50 356 4.43e-20 90.9
Msa0035930 AT3G04290.1 25.776 322 194 13 33 325 27 332 4.66e-20 90.5
Msa0035930 AT2G04020.2 25.602 332 170 15 36 343 44 322 7.94e-20 89.4
Msa0035930 AT1G75920.2 25.356 351 208 15 4 328 5 327 1.13e-19 89.0
Msa0035930 AT2G19010.1 25.519 337 205 9 36 345 31 348 1.14e-19 89.0
Msa0035930 AT3G16370.1 27.215 316 192 13 36 325 31 334 1.66e-19 88.6
Msa0035930 AT1G75930.1 27.219 338 190 12 24 331 18 329 2.63e-19 88.2
Msa0035930 AT2G04020.1 31.308 214 115 10 36 221 44 253 2.69e-19 86.7
Msa0035930 AT1G73610.1 26.126 333 202 13 21 331 21 331 3.22e-19 87.8
Msa0035930 AT2G19010.2 26.409 337 202 11 36 345 61 378 3.35e-19 88.2
Msa0035930 AT2G42990.1 26.349 315 195 14 36 325 29 331 4.90e-19 87.4
Msa0035930 AT3G27950.1 25.949 316 198 11 36 322 33 341 5.38e-19 87.4
Msa0035930 AT5G40990.1 26.113 337 206 12 31 337 33 356 7.32e-19 87.0
Msa0035930 AT1G67830.1 26.606 327 197 11 36 325 31 351 9.41e-19 86.7
Msa0035930 AT1G75900.1 26.415 318 196 13 36 328 44 348 1.16e-18 86.3
Msa0035930 AT1G58430.1 25.868 317 196 10 36 325 36 340 1.23e-18 86.3
Msa0035930 AT2G30310.1 24.375 320 203 11 36 328 35 342 1.23e-18 86.3
Msa0035930 AT5G63170.1 26.708 322 187 14 32 328 25 322 1.35e-18 85.9
Msa0035930 AT1G33811.1 27.523 327 181 14 36 325 35 342 2.41e-18 85.5
Msa0035930 AT3G14220.1 25.228 329 214 13 36 347 33 346 5.36e-18 84.3
Msa0035930 AT3G43570.1 27.726 321 169 13 30 328 25 304 8.37e-18 83.6
Msa0035930 AT2G19050.1 25.246 305 197 9 37 325 33 322 9.25e-18 83.6
Msa0035930 AT3G14225.2 23.030 330 225 11 31 337 33 356 9.43e-18 84.0
Msa0035930 AT1G28600.1 25.231 325 198 10 39 328 35 349 1.09e-17 84.0
Msa0035930 AT1G75880.1 27.864 323 199 13 30 328 47 359 1.32e-17 83.6
Msa0035930 AT3G43550.1 29.323 266 157 10 30 270 25 284 1.76e-17 82.0
Msa0035930 AT1G28650.1 25.157 318 202 10 39 325 41 353 1.80e-17 83.2
Msa0035930 AT2G31540.1 24.340 341 209 13 36 346 36 357 1.98e-17 82.8
Msa0035930 AT1G28570.1 25.617 324 199 14 39 328 38 353 2.17e-17 82.8
Msa0035930 AT5G15720.1 26.364 330 178 14 36 325 31 335 2.50e-17 82.4
Msa0035930 AT3G14225.1 22.754 334 225 11 31 337 33 360 2.89e-17 82.4
Msa0035930 AT2G24560.1 25.000 352 201 15 18 328 13 342 3.95e-17 82.0
Msa0035930 AT2G30220.1 22.812 320 208 10 36 328 34 341 4.77e-17 81.6
Msa0035930 AT4G01130.1 20.772 337 223 9 36 335 35 364 6.72e-17 81.6
Msa0035930 AT4G16230.1 32.663 199 108 8 37 211 32 228 7.70e-17 79.3
Msa0035930 AT1G29660.1 26.562 320 183 13 37 324 34 333 1.05e-16 80.9
Msa0035930 AT1G28640.1 24.138 319 204 10 39 325 39 351 1.06e-16 80.9
Msa0035930 AT1G28670.1 24.534 322 206 9 39 328 39 355 1.56e-16 80.5
Msa0035930 AT2G27360.1 23.602 322 209 9 39 328 37 353 1.58e-16 80.5
Msa0035930 AT3G26430.1 23.494 332 209 9 36 328 32 357 1.70e-16 80.1
Msa0035930 AT1G74460.1 25.714 315 195 10 37 325 25 326 1.78e-16 80.1
Msa0035930 AT5G14450.1 24.085 328 196 13 36 322 42 357 5.08e-16 79.0
Msa0035930 AT5G15720.2 27.675 271 149 11 36 270 31 290 5.62e-16 78.2
Msa0035930 AT2G19050.2 28.033 239 155 7 37 259 33 270 6.40e-16 77.4
Msa0035930 AT1G28580.1 23.602 322 208 11 39 328 41 356 1.01e-15 78.2
Msa0035930 AT4G26790.1 25.610 328 181 12 36 325 30 332 1.69e-15 77.0
Msa0035930 AT4G26790.2 25.610 328 181 12 36 325 30 332 1.69e-15 77.0
Msa0035930 AT1G54790.3 27.329 322 187 15 39 322 36 348 3.93e-15 76.3
Msa0035930 AT5G45670.1 24.611 321 191 12 37 325 31 332 6.50e-15 75.5
Msa0035930 AT1G23500.1 27.129 317 190 11 36 331 36 332 7.33e-15 75.1
Msa0035930 AT2G24560.2 25.342 292 169 10 18 270 13 294 1.52e-14 73.9
Msa0035930 AT1G56670.1 21.672 323 226 6 36 337 41 357 2.50e-14 73.9
Msa0035930 AT1G29670.1 25.625 320 189 13 36 325 33 333 1.63e-13 71.2
Msa0035930 AT1G31550.2 23.824 319 198 11 39 322 40 348 2.20e-13 71.2
Msa0035930 AT4G18970.1 23.839 323 191 11 37 325 30 331 2.38e-13 70.9
Msa0035930 AT1G29670.2 26.168 321 186 14 36 325 101 401 2.42e-13 71.2
Msa0035930 AT3G48460.1 22.006 359 223 13 1 322 9 347 2.43e-13 70.9
Msa0035930 AT4G18970.2 23.839 323 191 11 37 325 30 331 2.67e-13 70.9
Msa0035930 AT4G01130.2 21.479 284 189 7 36 290 35 313 3.32e-13 70.1
Msa0035930 AT5G03810.1 24.768 323 193 15 35 325 30 334 4.60e-13 69.7
Msa0035930 AT1G28590.1 22.936 327 204 10 39 328 40 355 7.90e-13 69.3
Msa0035930 AT1G31550.1 23.446 354 212 12 39 346 40 380 1.33e-12 68.6
Msa0035930 AT1G28610.2 21.605 324 211 9 39 328 35 349 8.27e-12 66.2
Msa0035930 AT1G28600.2 32.394 142 75 5 39 159 35 176 5.76e-11 62.0
Msa0035930 AT1G28660.2 24.224 322 205 11 39 328 39 353 7.66e-11 63.2
Msa0035930 AT1G28660.1 24.924 329 195 14 39 328 39 354 9.30e-11 63.2

Find 68 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACATTTGACTATGGTTT+TGG 0.211646 1_1:-64264433 None:intergenic
ACAGTTCACCCTTCTCAAAA+TGG 0.304025 1_1:+64265583 Msa0035930:CDS
TTCTCAATGCATATGGTGTT+GGG 0.333523 1_1:-64263489 None:intergenic
TTTCTGCATCTTTGCAATTA+CGG 0.339222 1_1:-64264534 None:intergenic
TCTATTTGTACACTCATGTT+TGG 0.364163 1_1:-64263586 None:intergenic
ATTGGTTTATTAGAGCCTAT+TGG 0.366126 1_1:+64264344 Msa0035930:CDS
TGTTTAGTTGTTGCACAGTT+TGG 0.375043 1_1:-64264457 None:intergenic
CTGATTAATGCAAATGTTGC+AGG 0.380823 1_1:+64263123 Msa0035930:CDS
TTTGGAGCAACATTTGACTA+TGG 0.388625 1_1:-64264439 None:intergenic
ACTCAAGAATGGGAGCTTGC+AGG 0.394970 1_1:+64263711 Msa0035930:CDS
TGAAGATTCAAGGTCATGTT+TGG 0.397860 1_1:-64263644 None:intergenic
TGTGGAAGTGTTGATGATAA+AGG 0.408108 1_1:+64265508 Msa0035930:CDS
GGAATAAACAAAATAGCAAT+TGG 0.409749 1_1:+64264326 Msa0035930:CDS
AACCTTCCGGCTGGTTTACC+AGG 0.411061 1_1:-64263285 None:intergenic
CAAGTGCAATTGAAGATTCA+AGG 0.415114 1_1:-64263654 None:intergenic
GCTACATTTGTACTCAAGAA+TGG 0.423138 1_1:+64263700 Msa0035930:CDS
TCCATTGCAACCGTGTTGTA+AGG 0.424737 1_1:+64265465 Msa0035930:CDS
GCAACAACTAAACAAGCAAA+TGG 0.428731 1_1:+64264466 Msa0035930:CDS
ATAAATACTACCAATGTAAT+CGG 0.430573 1_1:-64263328 None:intergenic
GAAGATCTCATAGTTATCAT+AGG 0.446327 1_1:-64264374 None:intergenic
GTGGAATTTCTCAATGCATA+TGG 0.446801 1_1:-64263496 None:intergenic
TTTCTCAATGCATATGGTGT+TGG 0.450567 1_1:-64263490 None:intergenic
AATTCCACAGAACTACAATA+TGG 0.459972 1_1:+64263511 Msa0035930:CDS
CCCTTACAACACGGTTGCAA+TGG 0.480734 1_1:-64265466 None:intergenic
CTACATTTGTACTCAAGAAT+GGG 0.486179 1_1:+64263701 Msa0035930:CDS
TCAAGTACATTTGCTCTACA+AGG 0.490130 1_1:-64264280 None:intergenic
TCTTAAACGTATTCACGAGC+TGG 0.491037 1_1:+64264304 Msa0035930:CDS
AACTTTGCACATGGAGGGAC+TGG 0.498125 1_1:+64263538 Msa0035930:CDS
ACAGGGAATTTCTTGAACTC+AGG 0.501576 1_1:+64263231 Msa0035930:CDS
ATCATAGGCACACATCCAAT+AGG 0.510466 1_1:-64264359 None:intergenic
GCAAATGTTGCAGGAGTGGA+AGG 0.512815 1_1:+64263132 Msa0035930:CDS
GTGTGATGAGTCTTCCAACT+TGG 0.516033 1_1:+64264406 Msa0035930:CDS
GAAATTCCCTGTGTCAACAT+AGG 0.528038 1_1:-64263220 None:intergenic
TAATTGCAAAGATGCAGAAA+AGG 0.529339 1_1:+64264537 Msa0035930:CDS
GGATCATATAATCCTCCTTA+CGG 0.531178 1_1:+64263252 Msa0035930:CDS
AAGACCGTCGCAGAACCTTC+CGG 0.534466 1_1:-64263298 None:intergenic
CAACAACTAAACAAGCAAAT+GGG 0.538938 1_1:+64264467 Msa0035930:CDS
TCTCAATGCATATGGTGTTG+GGG 0.548431 1_1:-64263488 None:intergenic
TTCACCCTTCTCAAAATGGT+TGG 0.558076 1_1:+64265587 Msa0035930:CDS
CCAGGAAAACTGATTCCGTA+AGG 0.561134 1_1:-64263267 None:intergenic
CTTGTCCTCACCGATTACAT+TGG 0.563351 1_1:+64263318 Msa0035930:CDS
GTATGAACTTTGCACATGGA+GGG 0.571948 1_1:+64263533 Msa0035930:CDS
GGGGACTCCTATGTTGACAC+AGG 0.571992 1_1:+64263213 Msa0035930:CDS
ATGATGCTGCAGTCTTCTCT+CGG 0.572996 1_1:+64265622 Msa0035930:CDS
AAATGTTGCAGGAGTGGAAG+GGG 0.575020 1_1:+64263134 Msa0035930:CDS
CATACCATATTGTAGTTCTG+TGG 0.576053 1_1:-64263515 None:intergenic
CCGTCGCAGAACCTTCCGGC+TGG 0.576768 1_1:-64263294 None:intergenic
TAATGCAAATGTTGCAGGAG+TGG 0.576837 1_1:+64263128 Msa0035930:CDS
AAGATGCAGAAAAGGCGAGC+TGG 0.578632 1_1:+64264545 Msa0035930:CDS
CTTAAACGTATTCACGAGCT+GGG 0.579159 1_1:+64264305 Msa0035930:CDS
CCATTGCAACCGTGTTGTAA+GGG 0.581191 1_1:+64265466 Msa0035930:CDS
TCAATTGCACTTGTGAACGC+TGG 0.587409 1_1:+64263664 Msa0035930:CDS
GCAACCGTGTTGTAAGGGAG+AGG 0.587550 1_1:+64265471 Msa0035930:CDS
GTCGGCTGATAATGGCTACA+AGG 0.588434 1_1:+64262487 None:intergenic
CAAGTACATTTGCTCTACAA+GGG 0.590094 1_1:-64264279 None:intergenic
TCCCAAAAGAGTGAAAACTC+TGG 0.607394 1_1:-64265559 None:intergenic
ATTGCACTTGTGAACGCTGG+CGG 0.620956 1_1:+64263667 Msa0035930:CDS
TTCCTGGTAAACCAGCCGGA+AGG 0.629014 1_1:+64263283 Msa0035930:CDS
CAAATGTTGCAGGAGTGGAA+GGG 0.644838 1_1:+64263133 Msa0035930:CDS
GTGTTGATGATAAAGGAGCA+AGG 0.647737 1_1:+64265515 Msa0035930:CDS
GGAAAACTGATTCCGTAAGG+AGG 0.652653 1_1:-64263264 None:intergenic
GGGACTCCTATGTTGACACA+GGG 0.653629 1_1:+64263214 Msa0035930:CDS
GGTATGAACTTTGCACATGG+AGG 0.654144 1_1:+64263532 Msa0035930:CDS
GCATCTTTGCAATTACGGAG+AGG 0.655395 1_1:-64264529 None:intergenic
TATGGTATGAACTTTGCACA+TGG 0.677670 1_1:+64263529 Msa0035930:CDS
TACTACCAATGTAATCGGTG+AGG 0.680441 1_1:-64263323 None:intergenic
AAATCCTCTCCCTTACAACA+CGG 0.691341 1_1:-64265475 None:intergenic
CCAGCCGGAAGGTTCTGCGA+CGG 0.701370 1_1:+64263294 Msa0035930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTTTTCATTTTAT+AGG + chr1_1:64263085-64263104 Msa0035930:intron 10.0%
!!! AATCTTTTTTATTTTTCAAA+TGG - chr1_1:64263778-64263797 None:intergenic 10.0%
!! TTAAATATGAGATAAAATTA+AGG + chr1_1:64263836-64263855 Msa0035930:intron 10.0%
!! TTATATGACATATTTATAAT+TGG + chr1_1:64263989-64264008 Msa0035930:intron 10.0%
!! TAATAATATTTCATTAACTA+TGG - chr1_1:64264594-64264613 None:intergenic 10.0%
!!! TGATAATTTACATTTTTTTT+AGG - chr1_1:64264665-64264684 None:intergenic 10.0%
!!! ATTTTTTTCATTTTATAGGT+TGG + chr1_1:64263089-64263108 Msa0035930:intron 15.0%
!!! ACATTTTAATTAGTTCTTTA+TGG + chr1_1:64264050-64264069 Msa0035930:intron 15.0%
!! TTCTTTATGGTATATTAATT+TGG + chr1_1:64264063-64264082 Msa0035930:intron 15.0%
!!! ATAATAGACTTGATTTTTAT+TGG - chr1_1:64264706-64264725 None:intergenic 15.0%
!! AAAAAGATAAATTAAATGAG+AGG + chr1_1:64264797-64264816 Msa0035930:intron 15.0%
!!! ATTTTTGTTACATTGTTTCT+CGG - chr1_1:64262653-64262672 None:intergenic 20.0%
!! TTGTTTCATCATATTATGAT+CGG - chr1_1:64262960-64262979 None:intergenic 20.0%
!!! ATTCTTTTCTTCATTATAAC+AGG + chr1_1:64263019-64263038 Msa0035930:intron 20.0%
!! AATGAAAAAAATTGAAAACC+AGG - chr1_1:64263081-64263100 None:intergenic 20.0%
!!! TCTTTAAAACTGTTTGTTTT+TGG + chr1_1:64263192-64263211 Msa0035930:CDS 20.0%
!!! CTTTAAAACTGTTTGTTTTT+GGG + chr1_1:64263193-64263212 Msa0035930:CDS 20.0%
!!! TTTAAAACTGTTTGTTTTTG+GGG + chr1_1:64263194-64263213 Msa0035930:CDS 20.0%
!! ATAAATACTACCAATGTAAT+CGG - chr1_1:64263331-64263350 None:intergenic 20.0%
!! ATATGAGATAAAATTAAGGA+AGG + chr1_1:64263840-64263859 Msa0035930:intron 20.0%
!!! GAAATCAAACTCAAATTTTT+CGG - chr1_1:64264168-64264187 None:intergenic 20.0%
!!! AAAATTTGAGTTTGATTTCT+AGG + chr1_1:64264169-64264188 Msa0035930:intron 20.0%
!! AATATGAGACAGTTATAAAA+TGG - chr1_1:64264894-64264913 None:intergenic 20.0%
!! GAAATATAAACTTCAATGTT+GGG - chr1_1:64265214-64265233 None:intergenic 20.0%
!! AGAAATATAAACTTCAATGT+TGG - chr1_1:64265215-64265234 None:intergenic 20.0%
!! TTCTAAACAAAGGATAAAAA+AGG - chr1_1:64265428-64265447 None:intergenic 20.0%
! ACACCAATTCAATATATAGT+TGG + chr1_1:64262833-64262852 Msa0035930:intron 25.0%
! TGAAGAAAAGAATAAACCAA+GGG - chr1_1:64263012-64263031 None:intergenic 25.0%
! ATGAAGAAAAGAATAAACCA+AGG - chr1_1:64263013-64263032 None:intergenic 25.0%
! ATCTCATCAAATTAAATACC+TGG + chr1_1:64263060-64263079 Msa0035930:intron 25.0%
!!! TGGGGATTTTATTTTCAAAA+AGG - chr1_1:64263473-64263492 None:intergenic 25.0%
!! ATTTTCAATACTTTGGTTGA+TGG + chr1_1:64263562-64263581 Msa0035930:CDS 25.0%
!!! AGTTTGTAGTTTTATGATAG+AGG - chr1_1:64264094-64264113 None:intergenic 25.0%
! GGAATAAACAAAATAGCAAT+TGG + chr1_1:64264326-64264345 Msa0035930:CDS 25.0%
!! CAATTTAGATAGTAGACTTT+TGG - chr1_1:64264746-64264765 None:intergenic 25.0%
! TAGAGATTCTATCATCAAAT+AGG + chr1_1:64264825-64264844 Msa0035930:intron 25.0%
! TTCTATCATCAAATAGGAAA+AGG + chr1_1:64264831-64264850 Msa0035930:intron 25.0%
! TCTATCATCAAATAGGAAAA+GGG + chr1_1:64264832-64264851 Msa0035930:intron 25.0%
! TGATCAATCTCATATAAGAT+TGG + chr1_1:64264944-64264963 Msa0035930:intron 25.0%
! TTATGCATTGTGTATATAAG+AGG + chr1_1:64265068-64265087 Msa0035930:intron 25.0%
! AAAGTGAATTATGAAACAAG+TGG - chr1_1:64265163-64265182 None:intergenic 25.0%
! ACAACAAAAAACGACAATAA+AGG + chr1_1:64265343-64265362 Msa0035930:intron 25.0%
CATTGTATAGATTGTCACAT+TGG - chr1_1:64262630-64262649 None:intergenic 30.0%
TGTCGAGAACTATTGTAAAT+CGG - chr1_1:64262733-64262752 None:intergenic 30.0%
AGGCCAACTATATATTGAAT+TGG - chr1_1:64262839-64262858 None:intergenic 30.0%
TATAAATACTCTACCAAGGT+TGG - chr1_1:64262887-64262906 None:intergenic 30.0%
AGTGTATAAATACTCTACCA+AGG - chr1_1:64262891-64262910 None:intergenic 30.0%
TTTCATCATATTATGATCGG+TGG - chr1_1:64262957-64262976 None:intergenic 30.0%
AATTCCACAGAACTACAATA+TGG + chr1_1:64263511-64263530 Msa0035930:CDS 30.0%
! GACTGGTATTTTCAATACTT+TGG + chr1_1:64263555-64263574 Msa0035930:CDS 30.0%
TCTATTTGTACACTCATGTT+TGG - chr1_1:64263589-64263608 None:intergenic 30.0%
CTACATTTGTACTCAAGAAT+GGG + chr1_1:64263701-64263720 Msa0035930:CDS 30.0%
!!! TTGTAGTTTTATGATAGAGG+TGG - chr1_1:64264091-64264110 None:intergenic 30.0%
AAATCAACTATGCATTCAAG+TGG + chr1_1:64264124-64264143 Msa0035930:intron 30.0%
! ATTGGTTTATTAGAGCCTAT+TGG + chr1_1:64264344-64264363 Msa0035930:CDS 30.0%
GAAGATCTCATAGTTATCAT+AGG - chr1_1:64264377-64264396 None:intergenic 30.0%
! CAACATTTGACTATGGTTTT+GGG - chr1_1:64264435-64264454 None:intergenic 30.0%
CAACAACTAAACAAGCAAAT+GGG + chr1_1:64264467-64264486 Msa0035930:CDS 30.0%
! AAAATCAGTTTTCATGACAC+TGG + chr1_1:64264490-64264509 Msa0035930:CDS 30.0%
TTTCTGCATCTTTGCAATTA+CGG - chr1_1:64264537-64264556 None:intergenic 30.0%
TAATTGCAAAGATGCAGAAA+AGG + chr1_1:64264537-64264556 Msa0035930:CDS 30.0%
TCAAATAGGAAAAGGGAAAT+AGG + chr1_1:64264839-64264858 Msa0035930:intron 30.0%
! CTGTTGAGTTTTCTAAACAA+AGG - chr1_1:64265438-64265457 None:intergenic 30.0%
!! GAGGATTTGAAGTATTTTTG+TGG + chr1_1:64265490-64265509 Msa0035930:CDS 30.0%
GATTGTCACATTGGTATTCA+AGG - chr1_1:64262621-64262640 None:intergenic 35.0%
GACTTGTAACACATTGAACA+CGG - chr1_1:64262696-64262715 None:intergenic 35.0%
! TATAGTTGGCCTAATCAGAT+TGG + chr1_1:64262847-64262866 Msa0035930:intron 35.0%
GGTAGATTACCAATCTGATT+AGG - chr1_1:64262859-64262878 None:intergenic 35.0%
! ATATGTGATGTACTGATGTC+AGG - chr1_1:64262926-64262945 None:intergenic 35.0%
CTGATTAATGCAAATGTTGC+AGG + chr1_1:64263123-64263142 Msa0035930:CDS 35.0%
GGATCATATAATCCTCCTTA+CGG + chr1_1:64263252-64263271 Msa0035930:CDS 35.0%
AGAAAATTAGCTCGTTCGAA+AGG + chr1_1:64263361-64263380 Msa0035930:intron 35.0%
TTCTCAATGCATATGGTGTT+GGG - chr1_1:64263492-64263511 None:intergenic 35.0%
TTTCTCAATGCATATGGTGT+TGG - chr1_1:64263493-64263512 None:intergenic 35.0%
GTGGAATTTCTCAATGCATA+TGG - chr1_1:64263499-64263518 None:intergenic 35.0%
! CATACCATATTGTAGTTCTG+TGG - chr1_1:64263518-64263537 None:intergenic 35.0%
TATGGTATGAACTTTGCACA+TGG + chr1_1:64263529-64263548 Msa0035930:CDS 35.0%
TGAAGATTCAAGGTCATGTT+TGG - chr1_1:64263647-64263666 None:intergenic 35.0%
CAAGTGCAATTGAAGATTCA+AGG - chr1_1:64263657-64263676 None:intergenic 35.0%
GCTACATTTGTACTCAAGAA+TGG + chr1_1:64263700-64263719 Msa0035930:CDS 35.0%
!!! TCGCCTTTTGTTTTTCTTTG+TGG + chr1_1:64264231-64264250 Msa0035930:intron 35.0%
CTGCCACAAAGAAAAACAAA+AGG - chr1_1:64264237-64264256 None:intergenic 35.0%
!!! CTTTTGTTTTTCTTTGTGGC+AGG + chr1_1:64264235-64264254 Msa0035930:intron 35.0%
CAAGTACATTTGCTCTACAA+GGG - chr1_1:64264282-64264301 None:intergenic 35.0%
TCAAGTACATTTGCTCTACA+AGG - chr1_1:64264283-64264302 None:intergenic 35.0%
! GCAACATTTGACTATGGTTT+TGG - chr1_1:64264436-64264455 None:intergenic 35.0%
! TTTGGAGCAACATTTGACTA+TGG - chr1_1:64264442-64264461 None:intergenic 35.0%
TGTTTAGTTGTTGCACAGTT+TGG - chr1_1:64264460-64264479 None:intergenic 35.0%
GCAACAACTAAACAAGCAAA+TGG + chr1_1:64264466-64264485 Msa0035930:CDS 35.0%
AAAAAAGGAAGTCAGCATCA+AGG - chr1_1:64265413-64265432 None:intergenic 35.0%
!! TGTGGAAGTGTTGATGATAA+AGG + chr1_1:64265508-64265527 Msa0035930:CDS 35.0%
!! CATACCAACCATTTTGAGAA+GGG - chr1_1:64265594-64265613 None:intergenic 35.0%
!! TCATACCAACCATTTTGAGA+AGG - chr1_1:64265595-64265614 None:intergenic 35.0%
ATTAGTGATCGACCTCACTT+TGG + chr1_1:64262538-64262557 Msa0035930:intron 40.0%
TGTAGAACACAACCAAAGTG+AGG - chr1_1:64262553-64262572 None:intergenic 40.0%
CACATTGGTATTCAAGGAGT+CGG - chr1_1:64262615-64262634 None:intergenic 40.0%
! TTCCCATTTTGCACTAGTGA+TGG + chr1_1:64262801-64262820 Msa0035930:intron 40.0%
! TCCCATTTTGCACTAGTGAT+GGG + chr1_1:64262802-64262821 Msa0035930:intron 40.0%
AATCTACCATATGCCAACCT+TGG + chr1_1:64262871-64262890 Msa0035930:intron 40.0%
! TGTACTGATGTCAGGATGAA+TGG - chr1_1:64262918-64262937 None:intergenic 40.0%
AAGTAATCACTCTTCTCCCT+TGG + chr1_1:64262993-64263012 Msa0035930:intron 40.0%
TAATGCAAATGTTGCAGGAG+TGG + chr1_1:64263128-64263147 Msa0035930:CDS 40.0%
GAAGGGGTAAAAAAGTCACA+TGG + chr1_1:64263150-64263169 Msa0035930:CDS 40.0%
GAAATTCCCTGTGTCAACAT+AGG - chr1_1:64263223-64263242 None:intergenic 40.0%
ACAGGGAATTTCTTGAACTC+AGG + chr1_1:64263231-64263250 Msa0035930:CDS 40.0%
TACTACCAATGTAATCGGTG+AGG - chr1_1:64263326-64263345 None:intergenic 40.0%
! TCTCAATGCATATGGTGTTG+GGG - chr1_1:64263491-64263510 None:intergenic 40.0%
GTATGAACTTTGCACATGGA+GGG + chr1_1:64263533-64263552 Msa0035930:CDS 40.0%
TCTTAAACGTATTCACGAGC+TGG + chr1_1:64264304-64264323 Msa0035930:CDS 40.0%
CTTAAACGTATTCACGAGCT+GGG + chr1_1:64264305-64264324 Msa0035930:CDS 40.0%
ATCATAGGCACACATCCAAT+AGG - chr1_1:64264362-64264381 None:intergenic 40.0%
!!! ATGGTTTTGGGAAACCAAGT+TGG - chr1_1:64264423-64264442 None:intergenic 40.0%
AAATCCTCTCCCTTACAACA+CGG - chr1_1:64265478-64265497 None:intergenic 40.0%
!! GTGTTGATGATAAAGGAGCA+AGG + chr1_1:64265515-64265534 Msa0035930:CDS 40.0%
! AGCCAGAGTTTTCACTCTTT+TGG + chr1_1:64265557-64265576 Msa0035930:CDS 40.0%
! GCCAGAGTTTTCACTCTTTT+GGG + chr1_1:64265558-64265577 Msa0035930:CDS 40.0%
TCCCAAAAGAGTGAAAACTC+TGG - chr1_1:64265562-64265581 None:intergenic 40.0%
ACAGTTCACCCTTCTCAAAA+TGG + chr1_1:64265583-64265602 Msa0035930:CDS 40.0%
TTCACCCTTCTCAAAATGGT+TGG + chr1_1:64265587-64265606 Msa0035930:CDS 40.0%
GCCCATCACTAGTGCAAAAT+GGG - chr1_1:64262806-64262825 None:intergenic 45.0%
ACTCTACCAAGGTTGGCATA+TGG - chr1_1:64262880-64262899 None:intergenic 45.0%
CAAATGTTGCAGGAGTGGAA+GGG + chr1_1:64263133-64263152 Msa0035930:CDS 45.0%
AAATGTTGCAGGAGTGGAAG+GGG + chr1_1:64263134-64263153 Msa0035930:CDS 45.0%
! GGAAAACTGATTCCGTAAGG+AGG - chr1_1:64263267-64263286 None:intergenic 45.0%
! CCAGGAAAACTGATTCCGTA+AGG - chr1_1:64263270-64263289 None:intergenic 45.0%
! CCTTACGGAATCAGTTTTCC+TGG + chr1_1:64263267-64263286 Msa0035930:CDS 45.0%
! AGTTTTCCTGGTAAACCAGC+CGG + chr1_1:64263279-64263298 Msa0035930:CDS 45.0%
! CTTGTCCTCACCGATTACAT+TGG + chr1_1:64263318-64263337 Msa0035930:CDS 45.0%
GGTATGAACTTTGCACATGG+AGG + chr1_1:64263532-64263551 Msa0035930:CDS 45.0%
TCAATTGCACTTGTGAACGC+TGG + chr1_1:64263664-64263683 Msa0035930:CDS 45.0%
GTGTGATGAGTCTTCCAACT+TGG + chr1_1:64264406-64264425 Msa0035930:CDS 45.0%
GCATCTTTGCAATTACGGAG+AGG - chr1_1:64264532-64264551 None:intergenic 45.0%
TCCATTGCAACCGTGTTGTA+AGG + chr1_1:64265465-64265484 Msa0035930:CDS 45.0%
CCATTGCAACCGTGTTGTAA+GGG + chr1_1:64265466-64265485 Msa0035930:CDS 45.0%
ATGATGCTGCAGTCTTCTCT+CGG + chr1_1:64265622-64265641 Msa0035930:CDS 45.0%
!! TATAATTATTAAATTGTTAA+AGG + chr1_1:64265377-64265396 Msa0035930:intron 5.0%
GGTATTCAAGGAGTCGGCTA+AGG - chr1_1:64262609-64262628 None:intergenic 50.0%
CGCCCATCACTAGTGCAAAA+TGG - chr1_1:64262807-64262826 None:intergenic 50.0%
!! TTTGCACTAGTGATGGGCGA+TGG + chr1_1:64262808-64262827 Msa0035930:intron 50.0%
GCAAATGTTGCAGGAGTGGA+AGG + chr1_1:64263132-64263151 Msa0035930:CDS 50.0%
GGGACTCCTATGTTGACACA+GGG + chr1_1:64263214-64263233 Msa0035930:CDS 50.0%
AACTTTGCACATGGAGGGAC+TGG + chr1_1:64263538-64263557 Msa0035930:CDS 50.0%
ATTGCACTTGTGAACGCTGG+CGG + chr1_1:64263667-64263686 Msa0035930:CDS 50.0%
ACTCAAGAATGGGAGCTTGC+AGG + chr1_1:64263711-64263730 Msa0035930:CDS 50.0%
AAGATGCAGAAAAGGCGAGC+TGG + chr1_1:64264545-64264564 Msa0035930:CDS 50.0%
CCCTTACAACACGGTTGCAA+TGG - chr1_1:64265469-64265488 None:intergenic 50.0%
TCAAGGAGTCGGCTAAGGCA+AGG - chr1_1:64262604-64262623 None:intergenic 55.0%
GGGGACTCCTATGTTGACAC+AGG + chr1_1:64263213-64263232 Msa0035930:CDS 55.0%
TTCCTGGTAAACCAGCCGGA+AGG + chr1_1:64263283-64263302 Msa0035930:CDS 55.0%
!! AACCTTCCGGCTGGTTTACC+AGG - chr1_1:64263288-64263307 None:intergenic 55.0%
AAGACCGTCGCAGAACCTTC+CGG - chr1_1:64263301-64263320 None:intergenic 55.0%
AATGGGAGCTTGCAGGTGAG+TGG + chr1_1:64263718-64263737 Msa0035930:intron 55.0%
GCAACCGTGTTGTAAGGGAG+AGG + chr1_1:64265471-64265490 Msa0035930:CDS 55.0%
CCAGCCGGAAGGTTCTGCGA+CGG + chr1_1:64263294-64263313 Msa0035930:CDS 65.0%
CCGTCGCAGAACCTTCCGGC+TGG - chr1_1:64263297-64263316 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 64262498 64265672 64262498 ID=Msa0035930;Name=Msa0035930
chr1_1 mRNA 64262498 64265672 64262498 ID=Msa0035930-mRNA-1;Parent=Msa0035930;Name=Msa0035930-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.25|0|0.8|1|1|5|0|348
chr1_1 exon 64262498 64262508 64262498 ID=Msa0035930-mRNA-1:exon:20559;Parent=Msa0035930-mRNA-1
chr1_1 exon 64263107 64263339 64263107 ID=Msa0035930-mRNA-1:exon:20560;Parent=Msa0035930-mRNA-1
chr1_1 exon 64263467 64263732 64263467 ID=Msa0035930-mRNA-1:exon:20561;Parent=Msa0035930-mRNA-1
chr1_1 exon 64264257 64264566 64264257 ID=Msa0035930-mRNA-1:exon:20562;Parent=Msa0035930-mRNA-1
chr1_1 exon 64265446 64265672 64265446 ID=Msa0035930-mRNA-1:exon:20563;Parent=Msa0035930-mRNA-1
chr1_1 CDS 64262498 64262508 64262498 ID=Msa0035930-mRNA-1:cds;Parent=Msa0035930-mRNA-1
chr1_1 CDS 64263107 64263339 64263107 ID=Msa0035930-mRNA-1:cds;Parent=Msa0035930-mRNA-1
chr1_1 CDS 64263467 64263732 64263467 ID=Msa0035930-mRNA-1:cds;Parent=Msa0035930-mRNA-1
chr1_1 CDS 64264257 64264566 64264257 ID=Msa0035930-mRNA-1:cds;Parent=Msa0035930-mRNA-1
chr1_1 CDS 64265446 64265672 64265446 ID=Msa0035930-mRNA-1:cds;Parent=Msa0035930-mRNA-1
Gene Sequence

>Msa0035930

ATGGCTACAAGGTTGGTAATTGTAGAACTGATTAATGCAAATGTTGCAGGAGTGGAAGGGGTAAAAAAGTCACATGGAGCATACAACAATACAAACTCTTTAAAACTGTTTGTTTTTGGGGACTCCTATGTTGACACAGGGAATTTCTTGAACTCAGGATCATATAATCCTCCTTACGGAATCAGTTTTCCTGGTAAACCAGCCGGAAGGTTCTGCGACGGTCTTGTCCTCACCGATTACATTGCTTCCTTTTTGAAAATAAAATCCCCAACACCATATGCATTGAGAAATTCCACAGAACTACAATATGGTATGAACTTTGCACATGGAGGGACTGGTATTTTCAATACTTTGGTTGATGGACCAAACATGAGTGTACAAATAGACTCATTTGAGAAGTTAATACAACAAAATGTCTATACCAAACATGACCTTGAATCTTCAATTGCACTTGTGAACGCTGGCGGTAATGACTATGCTACATTTGTACTCAAGAATGGGAGCTTGCAGGATATATCTGTCTTCACAAAATCCCTTGTAGAGCAAATGTACTTGAATCTTAAACGTATTCACGAGCTGGGAATAAACAAAATAGCAATTGGTTTATTAGAGCCTATTGGATGTGTGCCTATGATAACTATGAGATCTTCTTATGAAAAGTGTGATGAGTCTTCCAACTTGGTTTCCCAAAACCATAGTCAAATGTTGCTCCAAACTGTGCAACAACTAAACAAGCAAATGGGAAAATCAGTTTTCATGACACTGGATCTCTACAGCTCTTTCCTCTCCGTAATTGCAAAGATGCAGAAAAGGCGAGCTGAAAACTCAACAGTGATGAATCCATTGCAACCGTGTTGTAAGGGAGAGGATTTGAAGTATTTTTGTGGAAGTGTTGATGATAAAGGAGCAAGGAAATATAGTATATGTGAGAAGCCAGAGTTTTCACTCTTTTGGGACACAGTTCACCCTTCTCAAAATGGTTGGTATGAAGTTTATATGATGCTGCAGTCTTCTCTCGGTCAACTAATTCAAGAGAAAAACTTTTGA
Protein sequence

>Msa0035930

MATRLVIVELINANVAGVEGVKKSHGAYNNTNSLKLFVFGDSYVDTGNFLNSGSYNPPYGISFPGKPAGRFCDGLVLTDYIASFLKIKSPTPYALRNSTELQYGMNFAHGGTGIFNTLVDGPNMSVQIDSFEKLIQQNVYTKHDLESSIALVNAGGNDYATFVLKNGSLQDISVFTKSLVEQMYLNLKRIHELGINKIAIGLLEPIGCVPMITMRSSYEKCDESSNLVSQNHSQMLLQTVQQLNKQMGKSVFMTLDLYSSFLSVIAKMQKRRAENSTVMNPLQPCCKGEDLKYFCGSVDDKGARKYSICEKPEFSLFWDTVHPSQNGWYEVYMMLQSSLGQLIQEKNF*