AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0769540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0769540 MtrunA17_Chr5g0421411 97.902 286 6 0 53 338 1 286 0.0 586
Msa0769540 MtrunA17_Chr5g0404721 48.000 300 152 3 38 337 35 330 7.88e-98 292
Msa0769540 MtrunA17_Chr7g0244461 46.405 306 152 4 32 337 19 312 8.81e-98 291
Msa0769540 MtrunA17_Chr3g0106921 46.084 332 155 7 11 337 8 320 1.13e-96 289
Msa0769540 MtrunA17_Chr5g0432441 47.904 334 149 9 10 337 12 326 5.85e-96 287
Msa0769540 MtrunA17_Chr5g0400331 47.267 311 153 4 33 337 26 331 1.08e-94 284
Msa0769540 MtrunA17_Chr8g0372601 46.205 303 155 5 38 338 35 331 3.54e-93 280
Msa0769540 MtrunA17_Chr2g0292091 45.397 315 163 4 26 337 17 325 4.91e-93 281
Msa0769540 MtrunA17_Chr2g0320051 44.073 329 166 5 9 337 8 318 6.02e-93 280
Msa0769540 MtrunA17_Chr3g0104101 92.199 141 11 0 198 338 10 150 6.05e-93 273
Msa0769540 MtrunA17_Chr2g0320071 43.243 333 170 6 5 337 4 317 6.65e-93 279
Msa0769540 MtrunA17_Chr7g0244451 43.865 326 166 5 12 337 8 316 1.24e-92 278
Msa0769540 MtrunA17_Chr3g0114451 45.955 309 155 4 29 337 22 318 2.22e-92 278
Msa0769540 MtrunA17_Chr4g0068621 48.220 309 146 7 33 337 38 336 4.48e-92 278
Msa0769540 MtrunA17_Chr2g0320101 44.516 310 160 5 28 337 20 317 4.80e-92 277
Msa0769540 MtrunA17_Chr7g0224371 43.844 333 161 8 9 337 12 322 6.63e-92 277
Msa0769540 MtrunA17_Chr5g0438021 43.558 326 172 4 13 337 11 325 7.54e-92 277
Msa0769540 MtrunA17_Chr4g0013171 48.710 310 139 8 33 337 27 321 9.81e-92 276
Msa0769540 MtrunA17_Chr2g0320061 44.839 310 160 5 28 337 20 318 1.02e-91 276
Msa0769540 MtrunA17_Chr3g0129051 43.373 332 171 6 7 337 7 322 4.79e-91 275
Msa0769540 MtrunA17_Chr1g0155611 45.574 305 163 3 33 337 46 347 1.61e-90 274
Msa0769540 MtrunA17_Chr2g0292251 44.728 313 168 5 27 338 22 330 1.21e-89 272
Msa0769540 MtrunA17_Chr2g0292181 44.785 326 171 6 14 338 23 340 2.44e-89 272
Msa0769540 MtrunA17_Chr4g0070951 43.505 331 174 5 9 338 12 330 7.90e-89 269
Msa0769540 MtrunA17_Chr2g0292151 45.231 325 169 6 14 337 14 330 4.43e-88 268
Msa0769540 MtrunA17_Chr4g0013191 46.128 297 148 4 42 337 55 340 5.26e-88 268
Msa0769540 MtrunA17_Chr2g0320091 44.695 311 159 6 28 337 20 318 1.39e-87 266
Msa0769540 MtrunA17_Chr2g0299691 45.062 324 172 4 17 338 40 359 1.72e-87 267
Msa0769540 MtrunA17_Chr5g0402571 45.603 307 160 5 32 337 26 326 1.83e-87 266
Msa0769540 MtrunA17_Chr2g0292211 44.681 329 167 7 14 338 25 342 2.31e-87 267
Msa0769540 MtrunA17_Chr4g0038161 44.345 336 164 7 5 337 5 320 3.41e-87 265
Msa0769540 MtrunA17_Chr5g0402581 45.928 307 159 5 32 337 26 326 3.82e-87 265
Msa0769540 MtrunA17_Chr2g0292111 44.000 325 173 6 14 337 14 330 5.70e-87 265
Msa0769540 MtrunA17_Chr5g0432351 44.611 334 167 9 7 337 3 321 2.34e-86 263
Msa0769540 MtrunA17_Chr4g0013201 45.098 306 156 5 32 337 45 338 5.47e-86 262
Msa0769540 MtrunA17_Chr4g0038151 44.268 314 155 6 30 337 22 321 9.22e-86 261
Msa0769540 MtrunA17_Chr4g0013181 46.382 304 149 6 36 337 62 353 1.25e-85 262
Msa0769540 MtrunA17_Chr5g0432341 45.210 334 165 9 7 337 3 321 1.33e-85 261
Msa0769540 MtrunA17_Chr2g0292241 43.865 326 174 6 14 338 14 331 2.17e-85 261
Msa0769540 MtrunA17_Chr4g0043391 43.226 310 165 4 30 337 24 324 2.23e-85 260
Msa0769540 MtrunA17_Chr3g0106901 44.479 326 167 5 13 337 11 323 4.06e-85 259
Msa0769540 MtrunA17_Chr7g0258811 41.593 339 183 8 3 337 44 371 1.09e-84 260
Msa0769540 MtrunA17_Chr2g0292291 42.331 326 179 5 14 338 16 333 1.62e-84 259
Msa0769540 MtrunA17_Chr5g0432331 46.278 309 152 8 32 337 55 352 2.02e-84 259
Msa0769540 MtrunA17_Chr2g0320031 43.137 306 163 3 32 337 25 319 2.44e-84 258
Msa0769540 MtrunA17_Chr4g0013721 45.016 311 161 5 28 337 95 396 4.08e-84 260
Msa0769540 MtrunA17_Chr4g0038171 42.903 310 166 4 30 337 21 321 4.33e-84 257
Msa0769540 MtrunA17_Chr3g0129041 42.470 332 174 6 7 337 7 322 5.26e-84 257
Msa0769540 MtrunA17_Chr4g0013821 44.371 302 158 5 37 337 32 324 5.85e-84 257
Msa0769540 MtrunA17_Chr3g0129061 41.867 332 176 6 7 337 7 322 1.49e-83 256
Msa0769540 MtrunA17_Chr2g0291751 42.769 325 177 6 14 337 14 330 2.54e-83 256
Msa0769540 MtrunA17_Chr2g0292101 43.030 330 177 6 12 337 4 326 1.13e-82 254
Msa0769540 MtrunA17_Chr2g0292261 41.056 341 186 7 1 337 1 330 2.28e-82 254
Msa0769540 MtrunA17_Chr1g0175561 42.357 314 175 6 26 337 17 326 2.58e-82 253
Msa0769540 MtrunA17_Chr1g0213061 41.033 329 176 8 11 337 9 321 2.89e-82 253
Msa0769540 MtrunA17_Chr2g0292271 42.388 335 180 6 6 337 6 330 5.29e-82 253
Msa0769540 MtrunA17_Chr3g0107881 45.048 313 157 8 29 337 23 324 2.73e-80 247
Msa0769540 MtrunA17_Chr6g0477071 42.623 305 159 7 33 337 54 342 2.61e-78 243
Msa0769540 MtrunA17_Chr8g0371381 42.997 307 160 8 33 337 26 319 5.87e-77 239
Msa0769540 MtrunA17_Chr1g0188431 42.295 305 160 7 33 337 39 327 1.45e-76 238
Msa0769540 MtrunA17_Chr5g0405991 40.122 329 178 8 10 337 6 316 1.58e-76 238
Msa0769540 MtrunA17_Chr1g0204011 39.583 336 187 8 3 337 2 322 2.14e-75 235
Msa0769540 MtrunA17_Chr4g0024121 39.264 326 184 8 14 337 13 326 2.01e-74 232
Msa0769540 MtrunA17_Chr1g0157051 40.789 304 170 5 33 336 24 317 4.94e-72 226
Msa0769540 MtrunA17_Chr1g0194151 41.325 317 171 7 28 337 25 333 5.14e-69 219
Msa0769540 MtrunA17_Chr3g0128061 38.554 332 194 5 8 338 5 327 9.47e-69 218
Msa0769540 MtrunA17_Chr4g0063671 40.190 316 172 9 28 337 16 320 3.38e-68 216
Msa0769540 MtrunA17_Chr2g0279041 41.311 305 163 9 38 337 32 325 4.60e-68 216
Msa0769540 MtrunA17_Chr2g0322861 37.700 313 184 9 28 337 82 386 6.07e-68 218
Msa0769540 MtrunA17_Chr4g0076211 38.689 305 173 6 34 337 42 333 2.03e-67 214
Msa0769540 MtrunA17_Chr4g0046131 37.908 306 182 5 32 333 41 342 5.16e-65 209
Msa0769540 MtrunA17_Chr1g0197411 37.662 308 184 6 29 333 24 326 8.07e-65 208
Msa0769540 MtrunA17_Chr5g0432401 37.462 331 148 8 9 336 11 285 3.75e-64 204
Msa0769540 MtrunA17_Chr1g0194271 39.077 325 174 8 28 337 25 340 4.08e-64 206
Msa0769540 MtrunA17_Chr1g0164891 40.461 304 172 7 38 337 94 392 6.68e-64 207
Msa0769540 MtrunA17_Chr2g0296621 38.889 306 172 7 33 337 50 341 4.00e-63 204
Msa0769540 MtrunA17_Chr4g0075241 32.432 333 211 4 5 337 9 327 6.15e-62 200
Msa0769540 MtrunA17_Chr2g0329641 36.909 317 177 10 30 337 33 335 5.69e-61 198
Msa0769540 MtrunA17_Chr7g0254231 35.065 308 181 8 33 338 22 312 1.88e-60 196
Msa0769540 MtrunA17_Chr6g0451571 36.336 333 192 8 9 337 18 334 2.19e-60 196
Msa0769540 MtrunA17_Chr7g0268501 36.119 335 191 11 8 337 4 320 3.87e-60 195
Msa0769540 MtrunA17_Chr7g0268521 36.119 335 191 11 8 337 4 320 3.87e-60 195
Msa0769540 MtrunA17_Chr6g0467161 35.328 351 190 11 1 338 11 337 1.09e-59 195
Msa0769540 MtrunA17_Chr8g0364291 35.577 312 192 7 29 337 19 324 2.94e-59 193
Msa0769540 MtrunA17_Chr2g0316791 36.336 333 174 9 33 333 76 402 1.35e-58 194
Msa0769540 MtrunA17_Chr1g0148021 36.624 314 180 9 32 337 26 328 7.92e-58 190
Msa0769540 MtrunA17_Chr2g0316481 36.036 333 175 9 33 333 76 402 1.25e-57 191
Msa0769540 MtrunA17_Chr5g0401431 33.634 333 206 9 9 336 6 328 1.95e-57 189
Msa0769540 MtrunA17_Chr6g0467121 35.522 335 193 9 9 337 46 363 3.10e-57 190
Msa0769540 MtrunA17_Chr6g0467251 36.254 331 194 7 7 333 7 324 2.45e-56 186
Msa0769540 MtrunA17_Chr2g0316831 36.036 333 175 9 33 333 112 438 2.82e-56 189
Msa0769540 MtrunA17_Chr7g0225221 35.435 333 195 9 8 337 5 320 3.61e-56 185
Msa0769540 MtrunA17_Chr6g0460711 35.780 327 189 8 14 337 6 314 3.99e-56 185
Msa0769540 MtrunA17_Chr2g0316191 35.928 334 175 10 33 333 76 403 3.99e-56 187
Msa0769540 MtrunA17_Chr7g0254201 34.295 312 179 9 33 337 20 312 7.10e-56 184
Msa0769540 MtrunA17_Chr2g0278671 38.006 321 172 11 28 337 19 323 3.77e-55 182
Msa0769540 MtrunA17_Chr2g0279061 41.353 266 140 9 77 337 12 266 1.18e-54 179
Msa0769540 MtrunA17_Chr4g0072091 35.294 306 185 8 32 333 23 319 1.04e-51 174
Msa0769540 MtrunA17_Chr2g0311251 34.226 336 182 10 33 336 11 339 1.22e-51 174
Msa0769540 MtrunA17_Chr1g0181431 32.362 309 197 5 32 338 26 324 1.84e-51 173
Msa0769540 MtrunA17_Chr4g0053871 33.762 311 191 7 27 333 21 320 2.79e-50 170
Msa0769540 MtrunA17_Chr1g0181481 32.143 308 197 5 32 337 26 323 7.18e-50 169
Msa0769540 MtrunA17_Chr1g0181511 32.903 310 194 7 32 338 26 324 9.98e-50 169
Msa0769540 MtrunA17_Chr4g0074851 31.429 315 198 6 28 337 27 328 1.40e-49 168
Msa0769540 MtrunA17_Chr5g0413051 35.275 309 182 10 38 337 78 377 2.80e-49 169
Msa0769540 MtrunA17_Chr2g0311241 31.733 375 174 12 33 333 60 426 1.42e-48 168
Msa0769540 MtrunA17_Chr3g0136751 33.631 336 199 8 7 337 6 322 1.87e-48 165
Msa0769540 MtrunA17_Chr3g0114461 42.211 199 104 5 139 337 5 192 2.26e-43 148
Msa0769540 MtrunA17_Chr2g0316811 37.603 242 129 6 33 256 50 287 3.99e-42 149
Msa0769540 MtrunA17_Chr2g0292281 39.352 216 114 7 125 338 17 217 7.60e-40 140
Msa0769540 MtrunA17_Chr4g0004591 29.595 321 161 7 33 333 77 352 2.60e-36 134
Msa0769540 MtrunA17_Chr3g0114491 51.754 114 55 0 30 143 15 128 1.20e-35 126
Msa0769540 MtrunA17_Chr2g0316141 33.333 276 162 10 79 338 11 280 1.02e-34 128
Msa0769540 MtrunA17_Chr2g0316181 33.333 276 162 10 79 338 11 280 1.02e-34 128
Msa0769540 MtrunA17_Chr5g0432321 46.032 126 57 5 154 278 17 132 6.10e-25 97.8
Msa0769540 MtrunA17_Chr6g0468731 56.944 72 27 2 72 143 22 89 3.98e-20 83.6
Msa0769540 MtrunA17_Chr1g0181491 36.207 116 68 3 30 143 9 120 3.33e-19 83.2
Msa0769540 MtrunA17_Chr7g0254181 38.095 105 61 2 95 199 22 122 3.07e-17 77.8
Msa0769540 MtrunA17_Chr1g0181501 29.126 206 118 7 143 338 3 190 3.26e-16 75.9
Msa0769540 MtrunA17_Chr4g0013811 43.421 76 43 0 140 215 2 77 1.39e-15 70.9
Msa0769540 MtrunA17_Chr1g0196191 51.429 70 33 1 71 140 23 91 1.11e-14 70.9
Msa0769540 MtrunA17_Chr5g0432361 40.217 92 52 3 245 336 20 108 1.31e-13 66.2
Msa0769540 MtrunA17_Chr7g0254171 33.654 104 65 2 78 178 3 105 8.73e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0769540 AT1G68850.1 71.987 307 85 1 33 338 30 336 5.97e-172 481
Msa0769540 AT4G36430.1 48.344 302 152 3 37 338 34 331 2.50e-102 304
Msa0769540 AT2G18150.1 48.333 300 151 3 38 337 41 336 5.72e-101 301
Msa0769540 AT2G18140.1 48.013 302 153 3 36 337 38 335 2.79e-97 291
Msa0769540 AT1G44970.1 47.667 300 154 3 38 337 50 346 1.31e-94 285
Msa0769540 AT5G19890.1 47.284 313 148 8 30 337 27 327 1.67e-94 284
Msa0769540 AT4G16270.1 49.502 301 144 5 38 337 55 348 1.82e-94 285
Msa0769540 AT3G50990.1 44.516 310 168 3 28 337 36 341 2.64e-93 281
Msa0769540 AT5G05340.1 45.110 317 161 6 22 337 20 324 8.38e-93 280
Msa0769540 AT5G06720.1 41.212 330 184 6 9 337 13 333 8.70e-88 267
Msa0769540 AT2G38380.1 45.338 311 164 6 29 337 27 333 9.10e-88 268
Msa0769540 AT5G66390.1 42.038 314 178 3 24 337 24 333 1.03e-87 267
Msa0769540 AT5G58400.1 43.544 333 168 7 7 337 11 325 2.10e-87 266
Msa0769540 AT3G32980.1 45.513 312 165 5 29 338 27 335 2.77e-87 266
Msa0769540 AT2G22420.1 45.333 300 156 3 38 337 28 319 3.67e-87 265
Msa0769540 AT5G06730.1 40.303 330 187 6 9 337 14 334 6.95e-87 266
Msa0769540 AT2G38390.1 43.730 311 169 6 29 337 27 333 1.08e-86 265
Msa0769540 AT5G58390.1 43.373 332 168 7 8 337 3 316 5.73e-86 262
Msa0769540 AT2G35380.1 42.941 340 174 6 8 337 6 335 7.10e-86 262
Msa0769540 AT3G49120.1 43.910 312 170 5 29 338 28 336 7.97e-85 260
Msa0769540 AT3G49110.1 43.269 312 172 5 29 338 29 337 1.53e-82 254
Msa0769540 AT1G14540.1 41.987 312 165 4 29 337 17 315 4.00e-82 252
Msa0769540 AT4G08770.1 42.308 312 175 5 29 338 20 328 5.08e-82 253
Msa0769540 AT4G08780.1 41.667 312 177 5 29 338 20 328 2.72e-81 251
Msa0769540 AT1G14550.1 42.949 312 161 7 30 337 23 321 1.13e-80 248
Msa0769540 AT1G49570.1 42.581 310 164 5 32 335 47 348 2.91e-80 248
Msa0769540 AT5G19880.1 43.109 341 171 9 6 337 3 329 4.93e-77 239
Msa0769540 AT2G41480.1 39.823 339 184 9 5 337 4 328 2.15e-74 233
Msa0769540 AT4G11290.1 39.103 312 181 7 29 337 21 326 5.70e-73 229
Msa0769540 AT5G51890.1 40.968 310 173 6 29 337 22 322 3.10e-72 227
Msa0769540 AT4G33420.1 38.739 333 178 9 6 337 18 325 1.92e-70 223
Msa0769540 AT1G05260.1 37.097 310 188 6 30 338 23 326 4.89e-70 221
Msa0769540 AT4G33420.2 38.739 333 178 9 6 337 65 372 7.24e-70 223
Msa0769540 AT5G64120.1 41.860 301 162 8 38 337 40 328 3.25e-69 219
Msa0769540 AT1G71695.1 38.387 310 174 7 33 338 44 340 1.75e-67 216
Msa0769540 AT5G42180.1 39.145 304 175 5 33 336 23 316 8.37e-67 213
Msa0769540 AT3G03670.1 39.355 310 174 7 32 337 22 321 7.60e-66 211
Msa0769540 AT5G40150.1 37.267 322 172 9 27 337 26 328 3.34e-65 209
Msa0769540 AT3G21770.1 36.452 310 188 7 26 333 22 324 4.45e-65 209
Msa0769540 AT2G34060.1 37.419 310 180 5 32 334 41 343 1.31e-64 208
Msa0769540 AT3G28200.1 37.621 311 181 5 29 337 17 316 3.07e-64 206
Msa0769540 AT5G39580.1 41.060 302 164 9 38 337 30 319 3.10e-64 206
Msa0769540 AT4G17690.1 36.909 317 178 6 28 337 21 322 1.55e-62 202
Msa0769540 AT5G17820.1 38.436 307 172 9 32 337 23 313 1.97e-62 201
Msa0769540 AT2G35380.2 43.373 249 130 3 95 337 4 247 4.20e-62 198
Msa0769540 AT1G05240.1 37.580 314 178 9 31 337 23 325 1.32e-61 200
Msa0769540 AT1G05250.1 37.580 314 178 9 31 337 23 325 1.32e-61 200
Msa0769540 AT5G47000.1 37.987 308 178 7 33 337 33 330 3.58e-61 199
Msa0769540 AT5G17820.2 38.436 307 172 9 32 337 76 366 4.20e-61 200
Msa0769540 AT5G15180.1 36.391 338 193 11 6 337 8 329 6.26e-61 198
Msa0769540 AT4G33870.1 33.060 366 194 9 3 333 48 397 4.98e-60 198
Msa0769540 AT5G64110.1 37.942 311 177 8 31 337 32 330 1.85e-59 194
Msa0769540 AT3G01190.1 37.273 330 183 11 12 337 12 321 2.96e-59 194
Msa0769540 AT5G14130.1 34.146 328 202 8 14 337 13 330 3.87e-58 191
Msa0769540 AT5G14130.2 34.146 328 202 8 14 337 54 371 1.04e-57 191
Msa0769540 AT5G64100.1 38.158 304 170 9 38 337 42 331 2.38e-57 189
Msa0769540 AT1G30870.1 38.387 310 173 9 33 338 51 346 3.14e-57 189
Msa0769540 AT1G24110.1 36.039 308 185 6 30 333 19 318 9.20e-57 187
Msa0769540 AT4G25980.1 35.897 312 182 9 33 337 26 326 1.14e-56 187
Msa0769540 AT4G37530.1 36.102 313 182 6 29 333 23 325 1.28e-56 187
Msa0769540 AT1G77100.1 35.629 334 191 12 10 337 4 319 6.26e-56 185
Msa0769540 AT4G21960.1 33.439 314 191 6 29 337 27 327 1.60e-55 184
Msa0769540 AT4G37520.1 34.839 310 184 6 32 333 26 325 2.12e-55 184
Msa0769540 AT2G24800.1 36.218 312 181 6 32 337 30 329 4.25e-55 183
Msa0769540 AT4G31760.1 34.347 329 200 7 11 337 12 326 5.77e-55 182
Msa0769540 AT4G26010.1 34.154 325 191 8 14 337 7 309 2.71e-54 180
Msa0769540 AT4G26010.2 34.154 325 191 8 14 337 35 337 8.03e-54 180
Msa0769540 AT2G39040.1 36.278 317 184 7 30 337 43 350 9.02e-54 180
Msa0769540 AT2G43480.1 34.870 347 196 11 9 337 1 335 2.04e-53 179
Msa0769540 AT4G37520.2 34.194 310 183 7 32 333 26 322 8.53e-53 177
Msa0769540 AT2G18980.1 35.202 321 172 9 32 337 24 323 4.83e-52 175
Msa0769540 AT3G49960.1 33.742 326 204 7 14 333 6 325 2.41e-51 173
Msa0769540 AT4G37530.2 38.023 263 149 4 29 283 23 279 3.19e-51 171
Msa0769540 AT4G30170.1 33.861 316 183 6 32 337 26 325 4.20e-51 172
Msa0769540 AT5G22410.1 35.484 310 179 9 32 334 27 322 4.90e-51 172
Msa0769540 AT2G37130.1 32.903 310 193 7 32 337 29 327 2.70e-50 171
Msa0769540 AT3G17070.1 31.940 335 209 7 11 337 16 339 4.67e-50 170
Msa0769540 AT2G37130.2 32.899 307 191 7 35 337 1 296 9.17e-50 168
Msa0769540 AT5G24070.1 34.194 310 183 10 37 337 38 335 7.41e-49 167
Msa0769540 AT1G34510.1 35.065 308 179 8 32 337 21 309 1.64e-48 165
Msa0769540 AT5G67400.1 32.026 306 198 7 32 333 26 325 2.47e-48 166
Msa0769540 AT5G39580.2 46.341 164 83 3 38 201 30 188 4.58e-41 144
Msa0769540 AT4G25980.2 39.535 172 100 2 29 200 67 234 1.48e-39 141
Msa0769540 AT2G24800.2 41.667 168 94 1 32 199 30 193 5.04e-36 130
Msa0769540 AT3G17070.2 31.734 271 165 8 75 337 18 276 6.61e-35 129
Msa0769540 AT3G42570.1 36.842 95 59 1 105 198 53 147 2.64e-13 67.0

Find 67 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGATTCAATGGTCAAAA+TGG 0.150346 5_2:+38153045 Msa0769540:CDS
TAGGCCTTGATAAAGAAATT+TGG 0.197512 5_2:-38151929 None:intergenic
GATGATACATACACACTTAA+AGG 0.209734 5_2:+38151554 Msa0769540:CDS
CTTCCATGACTGCTTTATTC+AGG 0.245006 5_2:+38151047 Msa0769540:CDS
TTGGTGGACAAATAGATTTC+AGG 0.248040 5_2:-38152823 None:intergenic
TTCTACCAGTTACTATTAAA+AGG 0.260627 5_2:+38152911 Msa0769540:CDS
ACCAACATCCACTCTTTAAA+AGG 0.265822 5_2:+38151593 Msa0769540:CDS
TCTTGACAAGCTCTCTTGTT+TGG 0.295784 5_2:-38152985 None:intergenic
GCTTCATCACTGGAGAAATT+AGG 0.312437 5_2:+38153089 Msa0769540:CDS
AAATCTATTTGTCCACCAAT+TGG 0.335126 5_2:+38152827 Msa0769540:CDS
TTCATCAGGTGTTGGAAGAT+TGG 0.344913 5_2:-38151887 None:intergenic
CCATTGAATCAGAGAATTGC+TGG 0.348685 5_2:-38153036 None:intergenic
AGGCCTTGATAAAGAAATTT+GGG 0.352606 5_2:-38151928 None:intergenic
GGCTAGAGATGCTGTGATTC+TGG 0.356640 5_2:+38151700 Msa0769540:CDS
AATCTATTTGTCCACCAATT+GGG 0.367894 5_2:+38152828 Msa0769540:CDS
TGTAGGTTGGTGGACCATAT+TGG 0.380526 5_2:+38151809 Msa0769540:intron
TTGAACTGATTATCTGAGAT+TGG 0.386428 5_2:-38152797 None:intergenic
ATTCCCAAATTTCTTTATCA+AGG 0.393262 5_2:+38151925 Msa0769540:CDS
CTACTGTGTTTGACATTGTT+AGG 0.395693 5_2:+38150962 Msa0769540:CDS
TTTGATTTCTTGTAGGTTGG+TGG 0.396539 5_2:+38151799 Msa0769540:intron
GTAGGTTGGTGGACCATATT+GGG 0.409865 5_2:+38151810 Msa0769540:intron
CCAGCAATTCTCTGATTCAA+TGG 0.417000 5_2:+38153036 Msa0769540:CDS
AGGCCTATCAGTCACGGATA+TGG 0.421834 5_2:+38151945 Msa0769540:CDS
CAACCATATCCGTGACTGAT+AGG 0.423843 5_2:-38151948 None:intergenic
ACGGATATGGTTGCCCTTGT+CGG 0.453404 5_2:+38151958 Msa0769540:CDS
GTAACGCAGCCTCGGTTGTT+CGG 0.456843 5_2:+38151019 Msa0769540:CDS
CCCACAGGAACATCCCAATA+TGG 0.467663 5_2:-38151823 None:intergenic
TCTGATTCAATGGTCAAAAT+GGG 0.468708 5_2:+38153046 Msa0769540:CDS
TGACATTGTTAGGAAGCAAA+TGG 0.473769 5_2:+38150972 Msa0769540:CDS
ATCTATTTGTCCACCAATTG+GGG 0.476877 5_2:+38152829 Msa0769540:CDS
GAAATGTACTCGAGTGTGTT+CGG 0.477719 5_2:+38152959 Msa0769540:CDS
TAGGAAGCAAATGGAATGTT+CGG 0.486422 5_2:+38150981 Msa0769540:CDS
AAAGAATTATCGAAGAGATT+AGG 0.486671 5_2:-38152890 None:intergenic
ATAGAAACAAGGCTTTCATC+AGG 0.515660 5_2:-38151901 None:intergenic
ACAAGGCTTTCATCAGGTGT+TGG 0.523953 5_2:-38151895 None:intergenic
AATTCAGAAAGCTTCATCAC+TGG 0.525241 5_2:+38153079 Msa0769540:CDS
ATCAGGTGTTGGAAGATTGG+TGG 0.526275 5_2:-38151884 None:intergenic
CTCTAATAATACACTAACAA+TGG 0.528798 5_2:+38150816 Msa0769540:exon
TCAGCACAAGAAACAACTCC+AGG 0.529028 5_2:-38151662 None:intergenic
TGAACCTCGTAACGCAGCCT+CGG 0.534467 5_2:+38151011 Msa0769540:CDS
AGACCTGAATAAAGCAGTCA+TGG 0.539942 5_2:-38151050 None:intergenic
TTTGTTGAATCAGAGTGCCC+TGG 0.544131 5_2:+38151644 Msa0769540:CDS
TGCTGATATTCTCACAATTG+CGG 0.553704 5_2:+38151679 Msa0769540:CDS
TTGACACCTTGCCATACCAA+TGG 0.555332 5_2:-38152723 None:intergenic
TTATGTGTTCAGGGTTGCGA+TGG 0.568814 5_2:+38151518 Msa0769540:intron
CATGCAGGATCCCACACCAT+TGG 0.575994 5_2:+38152707 Msa0769540:intron
AGGATCCCACACCATTGGTA+TGG 0.577138 5_2:+38152712 Msa0769540:intron
ATTGGGATGTTCCTGTGGGA+AGG 0.579787 5_2:+38151827 Msa0769540:CDS
AGACAATAACATAACAGCAA+TGG 0.581171 5_2:+38152856 Msa0769540:CDS
ACCATATTGGGATGTTCCTG+TGG 0.584136 5_2:+38151822 Msa0769540:CDS
TTATCAAGGCCTATCAGTCA+CGG 0.585184 5_2:+38151939 Msa0769540:CDS
ACAGAATCTTTCCTTCCCAC+AGG 0.589625 5_2:-38151838 None:intergenic
CCAGTTACTATTAAAAGGCG+AGG 0.591560 5_2:+38152916 Msa0769540:CDS
CCCACACCATTGGTATGGCA+AGG 0.602364 5_2:+38152717 Msa0769540:CDS
CCTTGCCATACCAATGGTGT+GGG 0.603799 5_2:-38152717 None:intergenic
CTAACAATGTCAAACACAGT+AGG 0.608651 5_2:-38150961 None:intergenic
CAGTTACTATTAAAAGGCGA+GGG 0.614959 5_2:+38152917 Msa0769540:CDS
TGATAAGAACATACCGACAA+GGG 0.630605 5_2:-38151971 None:intergenic
ACCTTGCCATACCAATGGTG+TGG 0.635221 5_2:-38152718 None:intergenic
ATTTGGGAATGATAGAAACA+AGG 0.637153 5_2:-38151912 None:intergenic
ACAACCGAGGCTGCGTTACG+AGG 0.637956 5_2:-38151015 None:intergenic
TAGTGATCAAGTGTTAGTTG+AGG 0.665046 5_2:-38150925 None:intergenic
GAAGTGAAGCCGAACAACCG+AGG 0.665422 5_2:-38151028 None:intergenic
ATGATAAGAACATACCGACA+AGG 0.669642 5_2:-38151972 None:intergenic
TCTATTTGTCCACCAATTGG+GGG 0.671500 5_2:+38152830 Msa0769540:CDS
CCATATTGGGATGTTCCTGT+GGG 0.672124 5_2:+38151823 Msa0769540:CDS
CAGCACAAGAAACAACTCCA+GGG 0.694829 5_2:-38151661 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTATCTTATATAAGTTAT+TGG + chr5_2:38151755-38151774 Msa0769540:intron 15.0%
!! CTTTATCTTATATAAGTTAT+TGG + chr5_2:38151755-38151774 Msa0769540:intron 15.0%
!!! AAAACAAATTTTGACAGAAA+TGG - chr5_2:38150847-38150866 None:intergenic 20.0%
!!! TTACATATTGTTCTTTTGTT+TGG + chr5_2:38150868-38150887 Msa0769540:CDS 20.0%
!!! AATATGTCTAACTTTGAAAT+GGG - chr5_2:38151144-38151163 None:intergenic 20.0%
!!! AAATATGTCTAACTTTGAAA+TGG - chr5_2:38151145-38151164 None:intergenic 20.0%
!! CAAATTTATCTCTCAATTAA+AGG - chr5_2:38151272-38151291 None:intergenic 20.0%
!! CTTTAATTGAGAGATAAATT+TGG + chr5_2:38151270-38151289 Msa0769540:intron 20.0%
!! AAAAATTTCAGAAGCTAATA+TGG + chr5_2:38151302-38151321 Msa0769540:intron 20.0%
!!! TAATGTAGCTTTACTATATT+TGG - chr5_2:38151427-38151446 None:intergenic 20.0%
!!! ATTTTCTTTATATCCTCAAT+AGG - chr5_2:38151477-38151496 None:intergenic 20.0%
!! TTAGTTCGGAAAAAAAAAAA+TGG + chr5_2:38152181-38152200 Msa0769540:intron 20.0%
!!! AATTTTCGATCAAGAATATA+CGG + chr5_2:38152746-38152765 Msa0769540:CDS 20.0%
!!! AAAACAAATTTTGACAGAAA+TGG - chr5_2:38150847-38150866 None:intergenic 20.0%
!!! TTACATATTGTTCTTTTGTT+TGG + chr5_2:38150868-38150887 Msa0769540:CDS 20.0%
!!! AATATGTCTAACTTTGAAAT+GGG - chr5_2:38151144-38151163 None:intergenic 20.0%
!!! AAATATGTCTAACTTTGAAA+TGG - chr5_2:38151145-38151164 None:intergenic 20.0%
!! CAAATTTATCTCTCAATTAA+AGG - chr5_2:38151272-38151291 None:intergenic 20.0%
!! CTTTAATTGAGAGATAAATT+TGG + chr5_2:38151270-38151289 Msa0769540:intron 20.0%
!! AAAAATTTCAGAAGCTAATA+TGG + chr5_2:38151302-38151321 Msa0769540:intron 20.0%
!!! TAATGTAGCTTTACTATATT+TGG - chr5_2:38151427-38151446 None:intergenic 20.0%
!!! ATTTTCTTTATATCCTCAAT+AGG - chr5_2:38151477-38151496 None:intergenic 20.0%
!! TTAGTTCGGAAAAAAAAAAA+TGG + chr5_2:38152181-38152200 Msa0769540:intron 20.0%
!!! AATTTTCGATCAAGAATATA+CGG + chr5_2:38152746-38152765 Msa0769540:CDS 20.0%
! CTCTAATAATACACTAACAA+TGG + chr5_2:38150816-38150835 Msa0769540:exon 25.0%
! GCAATAATTACAAGGAAAAA+AGG - chr5_2:38151086-38151105 None:intergenic 25.0%
! AAACAGAAGCAATAATTACA+AGG - chr5_2:38151094-38151113 None:intergenic 25.0%
!!! AGCTAACATTTTAGTAGAAT+CGG - chr5_2:38151180-38151199 None:intergenic 25.0%
!! TTGGTTCTTAGATATACATT+TGG - chr5_2:38151233-38151252 None:intergenic 25.0%
!! GTTGTGATTTAGATTTTTGA+AGG + chr5_2:38151324-38151343 Msa0769540:intron 25.0%
! ATCAAAATGTTGAATGAAAC+AGG + chr5_2:38151359-38151378 Msa0769540:intron 25.0%
!! CTATATTTGGAGTAAAACTT+AGG - chr5_2:38151414-38151433 None:intergenic 25.0%
! ATTCCCAAATTTCTTTATCA+AGG + chr5_2:38151925-38151944 Msa0769540:CDS 25.0%
!!! CATTGATTTACAACTTAGAT+AGG + chr5_2:38151992-38152011 Msa0769540:intron 25.0%
! ATCATAGGAAAATTATATCG+TGG + chr5_2:38152028-38152047 Msa0769540:intron 25.0%
! TGTTTGTTCTACAAAAACAA+AGG - chr5_2:38152248-38152267 None:intergenic 25.0%
! GAATGATCATAAATCAAAGA+AGG - chr5_2:38152398-38152417 None:intergenic 25.0%
! AAATAACAAACCAAATTGCA+TGG + chr5_2:38152530-38152549 Msa0769540:intron 25.0%
! ATTATTTATGCCATGCAATT+TGG - chr5_2:38152543-38152562 None:intergenic 25.0%
!!! AATTACTTTTACAACTACCT+AGG - chr5_2:38152641-38152660 None:intergenic 25.0%
! AAAGAATTATCGAAGAGATT+AGG - chr5_2:38152893-38152912 None:intergenic 25.0%
! TTCTACCAGTTACTATTAAA+AGG + chr5_2:38152911-38152930 Msa0769540:CDS 25.0%
! CTCTAATAATACACTAACAA+TGG + chr5_2:38150816-38150835 Msa0769540:exon 25.0%
! GCAATAATTACAAGGAAAAA+AGG - chr5_2:38151086-38151105 None:intergenic 25.0%
! AAACAGAAGCAATAATTACA+AGG - chr5_2:38151094-38151113 None:intergenic 25.0%
!!! AGCTAACATTTTAGTAGAAT+CGG - chr5_2:38151180-38151199 None:intergenic 25.0%
!! TTGGTTCTTAGATATACATT+TGG - chr5_2:38151233-38151252 None:intergenic 25.0%
!! GTTGTGATTTAGATTTTTGA+AGG + chr5_2:38151324-38151343 Msa0769540:intron 25.0%
! ATCAAAATGTTGAATGAAAC+AGG + chr5_2:38151359-38151378 Msa0769540:intron 25.0%
!! CTATATTTGGAGTAAAACTT+AGG - chr5_2:38151414-38151433 None:intergenic 25.0%
! ATTCCCAAATTTCTTTATCA+AGG + chr5_2:38151925-38151944 Msa0769540:CDS 25.0%
!!! CATTGATTTACAACTTAGAT+AGG + chr5_2:38151992-38152011 Msa0769540:intron 25.0%
! ATCATAGGAAAATTATATCG+TGG + chr5_2:38152028-38152047 Msa0769540:intron 25.0%
! TGTTTGTTCTACAAAAACAA+AGG - chr5_2:38152248-38152267 None:intergenic 25.0%
! GAATGATCATAAATCAAAGA+AGG - chr5_2:38152398-38152417 None:intergenic 25.0%
! AAATAACAAACCAAATTGCA+TGG + chr5_2:38152530-38152549 Msa0769540:intron 25.0%
! ATTATTTATGCCATGCAATT+TGG - chr5_2:38152543-38152562 None:intergenic 25.0%
!!! AATTACTTTTACAACTACCT+AGG - chr5_2:38152641-38152660 None:intergenic 25.0%
! AAAGAATTATCGAAGAGATT+AGG - chr5_2:38152893-38152912 None:intergenic 25.0%
! TTCTACCAGTTACTATTAAA+AGG + chr5_2:38152911-38152930 Msa0769540:CDS 25.0%
TGTATATCTAAGAACCAATG+TGG + chr5_2:38151235-38151254 Msa0769540:intron 30.0%
!! AGGTATTTTTATCACCACAT+TGG - chr5_2:38151252-38151271 None:intergenic 30.0%
GGTTCATCTAATACTTTGAA+TGG - chr5_2:38151456-38151475 None:intergenic 30.0%
AGTATTAGATGAACCTATTG+AGG + chr5_2:38151461-38151480 Msa0769540:intron 30.0%
AAACTTGATGTTATGTGTTC+AGG + chr5_2:38151508-38151527 Msa0769540:intron 30.0%
AACTTGATGTTATGTGTTCA+GGG + chr5_2:38151509-38151528 Msa0769540:intron 30.0%
GATGATACATACACACTTAA+AGG + chr5_2:38151554-38151573 Msa0769540:CDS 30.0%
!! TTTCAAAGCCTTTTAAAGAG+TGG - chr5_2:38151604-38151623 None:intergenic 30.0%
! TTTGTCCTTTGATTTCTTGT+AGG + chr5_2:38151792-38151811 Msa0769540:intron 30.0%
ATTTGGGAATGATAGAAACA+AGG - chr5_2:38151915-38151934 None:intergenic 30.0%
AGGCCTTGATAAAGAAATTT+GGG - chr5_2:38151931-38151950 None:intergenic 30.0%
TAGGCCTTGATAAAGAAATT+TGG - chr5_2:38151932-38151951 None:intergenic 30.0%
! TCACTGAGTTTCTATTTTCA+AGG + chr5_2:38152308-38152327 Msa0769540:intron 30.0%
! CACTGAGTTTCTATTTTCAA+GGG + chr5_2:38152309-38152328 Msa0769540:intron 30.0%
!! ACTGAGTTTCTATTTTCAAG+GGG + chr5_2:38152310-38152329 Msa0769540:intron 30.0%
AATTACACAAAACACACCAA+TGG - chr5_2:38152348-38152367 None:intergenic 30.0%
TGATCATAAATCAAAGAAGG+CGG - chr5_2:38152395-38152414 None:intergenic 30.0%
TGTACAAAACAATCTGTGTA+AGG - chr5_2:38152450-38152469 None:intergenic 30.0%
TACCAAAATAATCCTCATCT+CGG + chr5_2:38152490-38152509 Msa0769540:intron 30.0%
!!! AGCTATTGACTTTTATTGCA+AGG - chr5_2:38152601-38152620 None:intergenic 30.0%
TTGCAATAAAAGTCAATAGC+TGG + chr5_2:38152600-38152619 Msa0769540:intron 30.0%
AATTTATATCGCACGCAATA+AGG - chr5_2:38152673-38152692 None:intergenic 30.0%
! TTGAACTGATTATCTGAGAT+TGG - chr5_2:38152800-38152819 None:intergenic 30.0%
AAATCTATTTGTCCACCAAT+TGG + chr5_2:38152827-38152846 Msa0769540:CDS 30.0%
AATCTATTTGTCCACCAATT+GGG + chr5_2:38152828-38152847 Msa0769540:CDS 30.0%
AGACAATAACATAACAGCAA+TGG + chr5_2:38152856-38152875 Msa0769540:CDS 30.0%
TCTGATTCAATGGTCAAAAT+GGG + chr5_2:38153046-38153065 Msa0769540:CDS 30.0%
TGTATATCTAAGAACCAATG+TGG + chr5_2:38151235-38151254 Msa0769540:intron 30.0%
!! AGGTATTTTTATCACCACAT+TGG - chr5_2:38151252-38151271 None:intergenic 30.0%
GGTTCATCTAATACTTTGAA+TGG - chr5_2:38151456-38151475 None:intergenic 30.0%
AGTATTAGATGAACCTATTG+AGG + chr5_2:38151461-38151480 Msa0769540:intron 30.0%
AAACTTGATGTTATGTGTTC+AGG + chr5_2:38151508-38151527 Msa0769540:intron 30.0%
AACTTGATGTTATGTGTTCA+GGG + chr5_2:38151509-38151528 Msa0769540:intron 30.0%
GATGATACATACACACTTAA+AGG + chr5_2:38151554-38151573 Msa0769540:CDS 30.0%
!! TTTCAAAGCCTTTTAAAGAG+TGG - chr5_2:38151604-38151623 None:intergenic 30.0%
! TTTGTCCTTTGATTTCTTGT+AGG + chr5_2:38151792-38151811 Msa0769540:intron 30.0%
ATTTGGGAATGATAGAAACA+AGG - chr5_2:38151915-38151934 None:intergenic 30.0%
AGGCCTTGATAAAGAAATTT+GGG - chr5_2:38151931-38151950 None:intergenic 30.0%
TAGGCCTTGATAAAGAAATT+TGG - chr5_2:38151932-38151951 None:intergenic 30.0%
! TCACTGAGTTTCTATTTTCA+AGG + chr5_2:38152308-38152327 Msa0769540:intron 30.0%
! CACTGAGTTTCTATTTTCAA+GGG + chr5_2:38152309-38152328 Msa0769540:intron 30.0%
!! ACTGAGTTTCTATTTTCAAG+GGG + chr5_2:38152310-38152329 Msa0769540:intron 30.0%
AATTACACAAAACACACCAA+TGG - chr5_2:38152348-38152367 None:intergenic 30.0%
TGATCATAAATCAAAGAAGG+CGG - chr5_2:38152395-38152414 None:intergenic 30.0%
TGTACAAAACAATCTGTGTA+AGG - chr5_2:38152450-38152469 None:intergenic 30.0%
TACCAAAATAATCCTCATCT+CGG + chr5_2:38152490-38152509 Msa0769540:intron 30.0%
!!! AGCTATTGACTTTTATTGCA+AGG - chr5_2:38152601-38152620 None:intergenic 30.0%
TTGCAATAAAAGTCAATAGC+TGG + chr5_2:38152600-38152619 Msa0769540:intron 30.0%
AATTTATATCGCACGCAATA+AGG - chr5_2:38152673-38152692 None:intergenic 30.0%
! TTGAACTGATTATCTGAGAT+TGG - chr5_2:38152800-38152819 None:intergenic 30.0%
AAATCTATTTGTCCACCAAT+TGG + chr5_2:38152827-38152846 Msa0769540:CDS 30.0%
AATCTATTTGTCCACCAATT+GGG + chr5_2:38152828-38152847 Msa0769540:CDS 30.0%
AGACAATAACATAACAGCAA+TGG + chr5_2:38152856-38152875 Msa0769540:CDS 30.0%
TCTGATTCAATGGTCAAAAT+GGG + chr5_2:38153046-38153065 Msa0769540:CDS 30.0%
!!! GTTCTTTTGTTTGGCTTTCT+TGG + chr5_2:38150877-38150896 Msa0769540:CDS 35.0%
TAGTGATCAAGTGTTAGTTG+AGG - chr5_2:38150928-38150947 None:intergenic 35.0%
CTAACAATGTCAAACACAGT+AGG - chr5_2:38150964-38150983 None:intergenic 35.0%
CTACTGTGTTTGACATTGTT+AGG + chr5_2:38150962-38150981 Msa0769540:CDS 35.0%
TGACATTGTTAGGAAGCAAA+TGG + chr5_2:38150972-38150991 Msa0769540:CDS 35.0%
TAGGAAGCAAATGGAATGTT+CGG + chr5_2:38150981-38151000 Msa0769540:CDS 35.0%
!! ACATTTTAGTAGAATCGGTG+TGG - chr5_2:38151175-38151194 None:intergenic 35.0%
ACCAACATCCACTCTTTAAA+AGG + chr5_2:38151593-38151612 Msa0769540:CDS 35.0%
TGCTGATATTCTCACAATTG+CGG + chr5_2:38151679-38151698 Msa0769540:CDS 35.0%
! TCCTTTGATTTCTTGTAGGT+TGG + chr5_2:38151796-38151815 Msa0769540:intron 35.0%
ACCAACCTACAAGAAATCAA+AGG - chr5_2:38151800-38151819 None:intergenic 35.0%
! TTTGATTTCTTGTAGGTTGG+TGG + chr5_2:38151799-38151818 Msa0769540:intron 35.0%
ATAGAAACAAGGCTTTCATC+AGG - chr5_2:38151904-38151923 None:intergenic 35.0%
TGATAAGAACATACCGACAA+GGG - chr5_2:38151974-38151993 None:intergenic 35.0%
ATGATAAGAACATACCGACA+AGG - chr5_2:38151975-38151994 None:intergenic 35.0%
! GGAGAAGTGTATCTTATCAT+AGG + chr5_2:38152013-38152032 Msa0769540:intron 35.0%
! ATATCGTGGACTGTTTAGAT+AGG + chr5_2:38152042-38152061 Msa0769540:intron 35.0%
!!! TTCGGGTGATTTTCAAGTAT+TGG - chr5_2:38152082-38152101 None:intergenic 35.0%
TAACCTGATCGCTATTAGTT+CGG + chr5_2:38152167-38152186 Msa0769540:intron 35.0%
TTGTAGAACAAACATCCATC+AGG + chr5_2:38152254-38152273 Msa0769540:intron 35.0%
CTCACATATGAATGAGAACA+AGG + chr5_2:38152284-38152303 Msa0769540:intron 35.0%
GATCATAAATCAAAGAAGGC+GGG - chr5_2:38152394-38152413 None:intergenic 35.0%
AACTACCTAGGAATCTTATG+AGG - chr5_2:38152629-38152648 None:intergenic 35.0%
! TTGGTGGACAAATAGATTTC+AGG - chr5_2:38152826-38152845 None:intergenic 35.0%
ATCTATTTGTCCACCAATTG+GGG + chr5_2:38152829-38152848 Msa0769540:CDS 35.0%
CAGTTACTATTAAAAGGCGA+GGG + chr5_2:38152917-38152936 Msa0769540:CDS 35.0%
CTCTGATTCAATGGTCAAAA+TGG + chr5_2:38153045-38153064 Msa0769540:CDS 35.0%
AATTCAGAAAGCTTCATCAC+TGG + chr5_2:38153079-38153098 Msa0769540:CDS 35.0%
!!! GTTCTTTTGTTTGGCTTTCT+TGG + chr5_2:38150877-38150896 Msa0769540:CDS 35.0%
TAGTGATCAAGTGTTAGTTG+AGG - chr5_2:38150928-38150947 None:intergenic 35.0%
CTAACAATGTCAAACACAGT+AGG - chr5_2:38150964-38150983 None:intergenic 35.0%
CTACTGTGTTTGACATTGTT+AGG + chr5_2:38150962-38150981 Msa0769540:CDS 35.0%
TGACATTGTTAGGAAGCAAA+TGG + chr5_2:38150972-38150991 Msa0769540:CDS 35.0%
TAGGAAGCAAATGGAATGTT+CGG + chr5_2:38150981-38151000 Msa0769540:CDS 35.0%
!! ACATTTTAGTAGAATCGGTG+TGG - chr5_2:38151175-38151194 None:intergenic 35.0%
ACCAACATCCACTCTTTAAA+AGG + chr5_2:38151593-38151612 Msa0769540:CDS 35.0%
TGCTGATATTCTCACAATTG+CGG + chr5_2:38151679-38151698 Msa0769540:CDS 35.0%
! TCCTTTGATTTCTTGTAGGT+TGG + chr5_2:38151796-38151815 Msa0769540:intron 35.0%
ACCAACCTACAAGAAATCAA+AGG - chr5_2:38151800-38151819 None:intergenic 35.0%
! TTTGATTTCTTGTAGGTTGG+TGG + chr5_2:38151799-38151818 Msa0769540:intron 35.0%
ATAGAAACAAGGCTTTCATC+AGG - chr5_2:38151904-38151923 None:intergenic 35.0%
TGATAAGAACATACCGACAA+GGG - chr5_2:38151974-38151993 None:intergenic 35.0%
ATGATAAGAACATACCGACA+AGG - chr5_2:38151975-38151994 None:intergenic 35.0%
! GGAGAAGTGTATCTTATCAT+AGG + chr5_2:38152013-38152032 Msa0769540:intron 35.0%
! ATATCGTGGACTGTTTAGAT+AGG + chr5_2:38152042-38152061 Msa0769540:intron 35.0%
!!! TTCGGGTGATTTTCAAGTAT+TGG - chr5_2:38152082-38152101 None:intergenic 35.0%
TAACCTGATCGCTATTAGTT+CGG + chr5_2:38152167-38152186 Msa0769540:intron 35.0%
TTGTAGAACAAACATCCATC+AGG + chr5_2:38152254-38152273 Msa0769540:intron 35.0%
CTCACATATGAATGAGAACA+AGG + chr5_2:38152284-38152303 Msa0769540:intron 35.0%
GATCATAAATCAAAGAAGGC+GGG - chr5_2:38152394-38152413 None:intergenic 35.0%
AACTACCTAGGAATCTTATG+AGG - chr5_2:38152629-38152648 None:intergenic 35.0%
! TTGGTGGACAAATAGATTTC+AGG - chr5_2:38152826-38152845 None:intergenic 35.0%
ATCTATTTGTCCACCAATTG+GGG + chr5_2:38152829-38152848 Msa0769540:CDS 35.0%
CAGTTACTATTAAAAGGCGA+GGG + chr5_2:38152917-38152936 Msa0769540:CDS 35.0%
CTCTGATTCAATGGTCAAAA+TGG + chr5_2:38153045-38153064 Msa0769540:CDS 35.0%
AATTCAGAAAGCTTCATCAC+TGG + chr5_2:38153079-38153098 Msa0769540:CDS 35.0%
! CTTCCATGACTGCTTTATTC+AGG + chr5_2:38151047-38151066 Msa0769540:CDS 40.0%
AGACCTGAATAAAGCAGTCA+TGG - chr5_2:38151053-38151072 None:intergenic 40.0%
AGTAGAATCGGTGTGGTAAA+TGG - chr5_2:38151168-38151187 None:intergenic 40.0%
!! GCCTTTTAAAGAGTGGATGT+TGG - chr5_2:38151597-38151616 None:intergenic 40.0%
!! TTCATCAGGTGTTGGAAGAT+TGG - chr5_2:38151890-38151909 None:intergenic 40.0%
TTATCAAGGCCTATCAGTCA+CGG + chr5_2:38151939-38151958 Msa0769540:CDS 40.0%
AATCACCCGAAACTACAACA+AGG + chr5_2:38152091-38152110 Msa0769540:intron 40.0%
! TGAGTCCTTGTTGTAGTTTC+GGG - chr5_2:38152099-38152118 None:intergenic 40.0%
! CTGAGTCCTTGTTGTAGTTT+CGG - chr5_2:38152100-38152119 None:intergenic 40.0%
TGTCTCACTCATTAAGACAG+AGG - chr5_2:38152146-38152165 None:intergenic 40.0%
TTTCCGAACTAATAGCGATC+AGG - chr5_2:38152173-38152192 None:intergenic 40.0%
!! GAGTTTCTATTTTCAAGGGG+CGG + chr5_2:38152313-38152332 Msa0769540:intron 40.0%
! AGCCGAGATGAGGATTATTT+TGG - chr5_2:38152495-38152514 None:intergenic 40.0%
ATTTCATTTGAGCCGAGATG+AGG - chr5_2:38152505-38152524 None:intergenic 40.0%
TGCAAGGCAATGTGAAGAAA+TGG - chr5_2:38152585-38152604 None:intergenic 40.0%
GGTTTCCTCATAAGATTCCT+AGG + chr5_2:38152621-38152640 Msa0769540:intron 40.0%
TTTCTGATCACAACACATGC+AGG + chr5_2:38152692-38152711 Msa0769540:intron 40.0%
TCTATTTGTCCACCAATTGG+GGG + chr5_2:38152830-38152849 Msa0769540:CDS 40.0%
! CCTCGCCTTTTAATAGTAAC+TGG - chr5_2:38152919-38152938 None:intergenic 40.0%
CCAGTTACTATTAAAAGGCG+AGG + chr5_2:38152916-38152935 Msa0769540:CDS 40.0%
GAAATGTACTCGAGTGTGTT+CGG + chr5_2:38152959-38152978 Msa0769540:CDS 40.0%
TCTTGACAAGCTCTCTTGTT+TGG - chr5_2:38152988-38153007 None:intergenic 40.0%
CCATTGAATCAGAGAATTGC+TGG - chr5_2:38153039-38153058 None:intergenic 40.0%
CCAGCAATTCTCTGATTCAA+TGG + chr5_2:38153036-38153055 Msa0769540:CDS 40.0%
GCTTCATCACTGGAGAAATT+AGG + chr5_2:38153089-38153108 Msa0769540:CDS 40.0%
! CTTCCATGACTGCTTTATTC+AGG + chr5_2:38151047-38151066 Msa0769540:CDS 40.0%
AGACCTGAATAAAGCAGTCA+TGG - chr5_2:38151053-38151072 None:intergenic 40.0%
AGTAGAATCGGTGTGGTAAA+TGG - chr5_2:38151168-38151187 None:intergenic 40.0%
!! GCCTTTTAAAGAGTGGATGT+TGG - chr5_2:38151597-38151616 None:intergenic 40.0%
!! TTCATCAGGTGTTGGAAGAT+TGG - chr5_2:38151890-38151909 None:intergenic 40.0%
TTATCAAGGCCTATCAGTCA+CGG + chr5_2:38151939-38151958 Msa0769540:CDS 40.0%
AATCACCCGAAACTACAACA+AGG + chr5_2:38152091-38152110 Msa0769540:intron 40.0%
! TGAGTCCTTGTTGTAGTTTC+GGG - chr5_2:38152099-38152118 None:intergenic 40.0%
! CTGAGTCCTTGTTGTAGTTT+CGG - chr5_2:38152100-38152119 None:intergenic 40.0%
TGTCTCACTCATTAAGACAG+AGG - chr5_2:38152146-38152165 None:intergenic 40.0%
TTTCCGAACTAATAGCGATC+AGG - chr5_2:38152173-38152192 None:intergenic 40.0%
!! GAGTTTCTATTTTCAAGGGG+CGG + chr5_2:38152313-38152332 Msa0769540:intron 40.0%
! AGCCGAGATGAGGATTATTT+TGG - chr5_2:38152495-38152514 None:intergenic 40.0%
ATTTCATTTGAGCCGAGATG+AGG - chr5_2:38152505-38152524 None:intergenic 40.0%
TGCAAGGCAATGTGAAGAAA+TGG - chr5_2:38152585-38152604 None:intergenic 40.0%
GGTTTCCTCATAAGATTCCT+AGG + chr5_2:38152621-38152640 Msa0769540:intron 40.0%
TTTCTGATCACAACACATGC+AGG + chr5_2:38152692-38152711 Msa0769540:intron 40.0%
TCTATTTGTCCACCAATTGG+GGG + chr5_2:38152830-38152849 Msa0769540:CDS 40.0%
! CCTCGCCTTTTAATAGTAAC+TGG - chr5_2:38152919-38152938 None:intergenic 40.0%
CCAGTTACTATTAAAAGGCG+AGG + chr5_2:38152916-38152935 Msa0769540:CDS 40.0%
GAAATGTACTCGAGTGTGTT+CGG + chr5_2:38152959-38152978 Msa0769540:CDS 40.0%
TCTTGACAAGCTCTCTTGTT+TGG - chr5_2:38152988-38153007 None:intergenic 40.0%
CCATTGAATCAGAGAATTGC+TGG - chr5_2:38153039-38153058 None:intergenic 40.0%
CCAGCAATTCTCTGATTCAA+TGG + chr5_2:38153036-38153055 Msa0769540:CDS 40.0%
GCTTCATCACTGGAGAAATT+AGG + chr5_2:38153089-38153108 Msa0769540:CDS 40.0%
TTATGTGTTCAGGGTTGCGA+TGG + chr5_2:38151518-38151537 Msa0769540:intron 45.0%
! TTTGTTGAATCAGAGTGCCC+TGG + chr5_2:38151644-38151663 Msa0769540:CDS 45.0%
CAGCACAAGAAACAACTCCA+GGG - chr5_2:38151664-38151683 None:intergenic 45.0%
TCAGCACAAGAAACAACTCC+AGG - chr5_2:38151665-38151684 None:intergenic 45.0%
!! TGTAGGTTGGTGGACCATAT+TGG + chr5_2:38151809-38151828 Msa0769540:intron 45.0%
!! GTAGGTTGGTGGACCATATT+GGG + chr5_2:38151810-38151829 Msa0769540:intron 45.0%
ACCATATTGGGATGTTCCTG+TGG + chr5_2:38151822-38151841 Msa0769540:CDS 45.0%
CCATATTGGGATGTTCCTGT+GGG + chr5_2:38151823-38151842 Msa0769540:CDS 45.0%
ACAGAATCTTTCCTTCCCAC+AGG - chr5_2:38151841-38151860 None:intergenic 45.0%
!! ATCAGGTGTTGGAAGATTGG+TGG - chr5_2:38151887-38151906 None:intergenic 45.0%
ACAAGGCTTTCATCAGGTGT+TGG - chr5_2:38151898-38151917 None:intergenic 45.0%
CAACCATATCCGTGACTGAT+AGG - chr5_2:38151951-38151970 None:intergenic 45.0%
! TCGTGGACTGTTTAGATAGG+TGG + chr5_2:38152045-38152064 Msa0769540:intron 45.0%
TATGTGAGACAGTGACCTGA+TGG - chr5_2:38152272-38152291 None:intergenic 45.0%
TTGACACCTTGCCATACCAA+TGG - chr5_2:38152726-38152745 None:intergenic 45.0%
TTATTGTCTCCTCCCCCAAT+TGG - chr5_2:38152845-38152864 None:intergenic 45.0%
TTATGTGTTCAGGGTTGCGA+TGG + chr5_2:38151518-38151537 Msa0769540:intron 45.0%
! TTTGTTGAATCAGAGTGCCC+TGG + chr5_2:38151644-38151663 Msa0769540:CDS 45.0%
CAGCACAAGAAACAACTCCA+GGG - chr5_2:38151664-38151683 None:intergenic 45.0%
TCAGCACAAGAAACAACTCC+AGG - chr5_2:38151665-38151684 None:intergenic 45.0%
!! TGTAGGTTGGTGGACCATAT+TGG + chr5_2:38151809-38151828 Msa0769540:intron 45.0%
!! GTAGGTTGGTGGACCATATT+GGG + chr5_2:38151810-38151829 Msa0769540:intron 45.0%
ACCATATTGGGATGTTCCTG+TGG + chr5_2:38151822-38151841 Msa0769540:CDS 45.0%
CCATATTGGGATGTTCCTGT+GGG + chr5_2:38151823-38151842 Msa0769540:CDS 45.0%
ACAGAATCTTTCCTTCCCAC+AGG - chr5_2:38151841-38151860 None:intergenic 45.0%
!! ATCAGGTGTTGGAAGATTGG+TGG - chr5_2:38151887-38151906 None:intergenic 45.0%
ACAAGGCTTTCATCAGGTGT+TGG - chr5_2:38151898-38151917 None:intergenic 45.0%
CAACCATATCCGTGACTGAT+AGG - chr5_2:38151951-38151970 None:intergenic 45.0%
! TCGTGGACTGTTTAGATAGG+TGG + chr5_2:38152045-38152064 Msa0769540:intron 45.0%
TATGTGAGACAGTGACCTGA+TGG - chr5_2:38152272-38152291 None:intergenic 45.0%
TTGACACCTTGCCATACCAA+TGG - chr5_2:38152726-38152745 None:intergenic 45.0%
TTATTGTCTCCTCCCCCAAT+TGG - chr5_2:38152845-38152864 None:intergenic 45.0%
GGCTAGAGATGCTGTGATTC+TGG + chr5_2:38151700-38151719 Msa0769540:CDS 50.0%
CCCACAGGAACATCCCAATA+TGG - chr5_2:38151826-38151845 None:intergenic 50.0%
ATTGGGATGTTCCTGTGGGA+AGG + chr5_2:38151827-38151846 Msa0769540:CDS 50.0%
AGGCCTATCAGTCACGGATA+TGG + chr5_2:38151945-38151964 Msa0769540:CDS 50.0%
ACGGATATGGTTGCCCTTGT+CGG + chr5_2:38151958-38151977 Msa0769540:CDS 50.0%
GTACTTGCCGAAGAAGCTCA+TGG + chr5_2:38152119-38152138 Msa0769540:intron 50.0%
CAGAGGACCATGAGCTTCTT+CGG - chr5_2:38152129-38152148 None:intergenic 50.0%
AGGATCCCACACCATTGGTA+TGG + chr5_2:38152712-38152731 Msa0769540:intron 50.0%
CCTTGCCATACCAATGGTGT+GGG - chr5_2:38152720-38152739 None:intergenic 50.0%
ACCTTGCCATACCAATGGTG+TGG - chr5_2:38152721-38152740 None:intergenic 50.0%
ATTTGTCCACCAATTGGGGG+AGG + chr5_2:38152833-38152852 Msa0769540:CDS 50.0%
GGCTAGAGATGCTGTGATTC+TGG + chr5_2:38151700-38151719 Msa0769540:CDS 50.0%
CCCACAGGAACATCCCAATA+TGG - chr5_2:38151826-38151845 None:intergenic 50.0%
ATTGGGATGTTCCTGTGGGA+AGG + chr5_2:38151827-38151846 Msa0769540:CDS 50.0%
AGGCCTATCAGTCACGGATA+TGG + chr5_2:38151945-38151964 Msa0769540:CDS 50.0%
ACGGATATGGTTGCCCTTGT+CGG + chr5_2:38151958-38151977 Msa0769540:CDS 50.0%
GTACTTGCCGAAGAAGCTCA+TGG + chr5_2:38152119-38152138 Msa0769540:intron 50.0%
CAGAGGACCATGAGCTTCTT+CGG - chr5_2:38152129-38152148 None:intergenic 50.0%
AGGATCCCACACCATTGGTA+TGG + chr5_2:38152712-38152731 Msa0769540:intron 50.0%
CCTTGCCATACCAATGGTGT+GGG - chr5_2:38152720-38152739 None:intergenic 50.0%
ACCTTGCCATACCAATGGTG+TGG - chr5_2:38152721-38152740 None:intergenic 50.0%
ATTTGTCCACCAATTGGGGG+AGG + chr5_2:38152833-38152852 Msa0769540:CDS 50.0%
TGAACCTCGTAACGCAGCCT+CGG + chr5_2:38151011-38151030 Msa0769540:CDS 55.0%
GTAACGCAGCCTCGGTTGTT+CGG + chr5_2:38151019-38151038 Msa0769540:CDS 55.0%
GAAGTGAAGCCGAACAACCG+AGG - chr5_2:38151031-38151050 None:intergenic 55.0%
GGGGCGGCATTATTCACCAT+TGG + chr5_2:38152329-38152348 Msa0769540:intron 55.0%
CATGCAGGATCCCACACCAT+TGG + chr5_2:38152707-38152726 Msa0769540:intron 55.0%
CCCACACCATTGGTATGGCA+AGG + chr5_2:38152717-38152736 Msa0769540:CDS 55.0%
TTGTCTCCTCCCCCAATTGG+TGG - chr5_2:38152842-38152861 None:intergenic 55.0%
TGAACCTCGTAACGCAGCCT+CGG + chr5_2:38151011-38151030 Msa0769540:CDS 55.0%
GTAACGCAGCCTCGGTTGTT+CGG + chr5_2:38151019-38151038 Msa0769540:CDS 55.0%
GAAGTGAAGCCGAACAACCG+AGG - chr5_2:38151031-38151050 None:intergenic 55.0%
GGGGCGGCATTATTCACCAT+TGG + chr5_2:38152329-38152348 Msa0769540:intron 55.0%
CATGCAGGATCCCACACCAT+TGG + chr5_2:38152707-38152726 Msa0769540:intron 55.0%
CCCACACCATTGGTATGGCA+AGG + chr5_2:38152717-38152736 Msa0769540:CDS 55.0%
TTGTCTCCTCCCCCAATTGG+TGG - chr5_2:38152842-38152861 None:intergenic 55.0%
ACAACCGAGGCTGCGTTACG+AGG - chr5_2:38151018-38151037 None:intergenic 60.0%
ACAACCGAGGCTGCGTTACG+AGG - chr5_2:38151018-38151037 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 38150796 38153138 38150796 ID=Msa0769540;Name=Msa0769540
chr5_2 mRNA 38150796 38153138 38150796 ID=Msa0769540-mRNA-1;Parent=Msa0769540;Name=Msa0769540-mRNA-1;_AED=0.09;_eAED=0.09;_QI=39|1|0.75|1|1|1|4|0|338
chr5_2 exon 38150796 38151068 38150796 ID=Msa0769540-mRNA-1:exon:12434;Parent=Msa0769540-mRNA-1
chr5_2 exon 38151530 38151721 38151530 ID=Msa0769540-mRNA-1:exon:12435;Parent=Msa0769540-mRNA-1
chr5_2 exon 38151814 38151979 38151814 ID=Msa0769540-mRNA-1:exon:12436;Parent=Msa0769540-mRNA-1
chr5_2 exon 38152714 38153138 38152714 ID=Msa0769540-mRNA-1:exon:12437;Parent=Msa0769540-mRNA-1
chr5_2 five_prime_UTR 38150796 38150834 38150796 ID=Msa0769540-mRNA-1:five_prime_utr;Parent=Msa0769540-mRNA-1
chr5_2 CDS 38150835 38151068 38150835 ID=Msa0769540-mRNA-1:cds;Parent=Msa0769540-mRNA-1
chr5_2 CDS 38151530 38151721 38151530 ID=Msa0769540-mRNA-1:cds;Parent=Msa0769540-mRNA-1
chr5_2 CDS 38151814 38151979 38151814 ID=Msa0769540-mRNA-1:cds;Parent=Msa0769540-mRNA-1
chr5_2 CDS 38152714 38153138 38152714 ID=Msa0769540-mRNA-1:cds;Parent=Msa0769540-mRNA-1
Gene Sequence

>Msa0769540

ATGGATACTCCATTTCTGTCAAAATTTGTTTTTTTACATATTGTTCTTTTGTTTGGCTTTCTTGGTGACAATAGATTGTATGCAAGTGAGCCTCAACTAACACTTGATCACTATGCATCAACTTGTCCTACTGTGTTTGACATTGTTAGGAAGCAAATGGAATGTTCGGTGCTTTCTGAACCTCGTAACGCAGCCTCGGTTGTTCGGCTTCACTTCCATGACTGCTTTATTCAGGGTTGCGATGGATCAGTCTTGCTCGATGATACATACACACTTAAAGGTGAAAAGAAAGCAGCTACCAACATCCACTCTTTAAAAGGCTTTGAAATTATCGATCAAATCAAGAACTTTGTTGAATCAGAGTGCCCTGGAGTTGTTTCTTGTGCTGATATTCTCACAATTGCGGCTAGAGATGCTGTGATTCTGGTTGGTGGACCATATTGGGATGTTCCTGTGGGAAGGAAAGATTCTGTGACTGCAAGTTTTGAACTTGCTACCACCAATCTTCCAACACCTGATGAAAGCCTTGTTTCTATCATTCCCAAATTTCTTTATCAAGGCCTATCAGTCACGGATATGGTTGCCCTTGTCGGATCCCACACCATTGGTATGGCAAGGTGTCAAAATTTTCGATCAAGAATATACGGAGACTATGAATCAACTTCAGTGAAAAATCCAATCTCAGATAATCAGTTCAACAACCTGAAATCTATTTGTCCACCAATTGGGGGAGGAGACAATAACATAACAGCAATGGACTATGTGACGCCTAATCTCTTCGATAATTCTTTCTACCAGTTACTATTAAAAGGCGAGGGAGTTCTTAACTCAGATCAAGAAATGTACTCGAGTGTGTTCGGAATCCAAACAAGAGAGCTTGTCAAGAAGTATGCAGCAGACACTCTTGCTTTCTTCCAGCAATTCTCTGATTCAATGGTCAAAATGGGAAATATCACAAATTCAGAAAGCTTCATCACTGGAGAAATTAGGAAGAACTGCAGATTTGTTAACACATAA
Protein sequence

>Msa0769540

MDTPFLSKFVFLHIVLLFGFLGDNRLYASEPQLTLDHYASTCPTVFDIVRKQMECSVLSEPRNAASVVRLHFHDCFIQGCDGSVLLDDTYTLKGEKKAATNIHSLKGFEIIDQIKNFVESECPGVVSCADILTIAARDAVILVGGPYWDVPVGRKDSVTASFELATTNLPTPDESLVSIIPKFLYQGLSVTDMVALVGSHTIGMARCQNFRSRIYGDYESTSVKNPISDNQFNNLKSICPPIGGGDNNITAMDYVTPNLFDNSFYQLLLKGEGVLNSDQEMYSSVFGIQTRELVKKYAADTLAFFQQFSDSMVKMGNITNSESFITGEIRKNCRFVNT*