AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386830 MtrunA17_Chr4g0060811 95.989 374 9 1 5 378 1 368 0.0 731
Msa1386830 MtrunA17_Chr3g0092131 77.807 374 72 3 5 378 1 363 0.0 600
Msa1386830 MtrunA17_Chr5g0434621 45.588 340 177 3 12 351 6 337 4.11e-105 313
Msa1386830 MtrunA17_Chr4g0068441 44.615 325 165 8 32 351 36 350 8.64e-79 246
Msa1386830 MtrunA17_Chr2g0294301 43.077 325 170 8 32 351 36 350 1.55e-78 246
Msa1386830 MtrunA17_Chr4g0017431 39.308 318 181 6 33 347 33 341 4.88e-77 242
Msa1386830 MtrunA17_Chr2g0294311 41.867 332 170 7 33 351 34 355 4.43e-74 234
Msa1386830 MtrunA17_Chr8g0374101 39.634 328 181 9 33 351 39 358 1.40e-73 233
Msa1386830 MtrunA17_Chr3g0131321 37.578 322 188 6 33 349 36 349 6.29e-71 227
Msa1386830 MtrunA17_Chr3g0077571 36.471 340 203 6 8 347 9 335 1.40e-69 222
Msa1386830 MtrunA17_Chr5g0438621 36.599 347 205 9 11 353 11 346 5.10e-68 218
Msa1386830 MtrunA17_Chr1g0189901 34.211 342 215 5 12 351 12 345 2.06e-65 212
Msa1386830 MtrunA17_Chr1g0189931 36.449 321 194 5 33 351 34 346 5.54e-65 211
Msa1386830 MtrunA17_Chr7g0275001 35.942 345 208 6 13 352 5 341 1.79e-64 209
Msa1386830 MtrunA17_Chr8g0380041 36.364 352 203 10 5 347 1 340 4.28e-64 208
Msa1386830 MtrunA17_Chr7g0275011 34.884 344 214 5 11 352 14 349 4.34e-64 209
Msa1386830 MtrunA17_Chr2g0285061 33.819 343 209 9 10 347 13 342 7.16e-64 208
Msa1386830 MtrunA17_Chr7g0275021 35.514 321 197 5 33 351 36 348 4.83e-63 206
Msa1386830 MtrunA17_Chr5g0438631 36.615 325 191 8 34 353 31 345 5.48e-63 205
Msa1386830 MtrunA17_Chr3g0086641 35.535 318 192 6 33 347 40 347 8.51e-63 205
Msa1386830 MtrunA17_Chr4g0008851 35.652 345 209 7 11 351 13 348 1.41e-62 204
Msa1386830 MtrunA17_Chr1g0182811 34.181 354 219 8 1 350 5 348 2.41e-62 204
Msa1386830 MtrunA17_Chr3g0099151 32.722 327 199 8 33 350 89 403 1.14e-61 204
Msa1386830 MtrunA17_Chr7g0274991 35.826 321 196 5 33 351 35 347 4.94e-61 201
Msa1386830 MtrunA17_Chr3g0105401 33.144 353 223 7 5 353 2 345 2.11e-59 196
Msa1386830 MtrunA17_Chr3g0099161 30.595 353 231 5 3 350 64 407 5.60e-59 197
Msa1386830 MtrunA17_Chr5g0444401 30.728 371 231 7 5 367 1 353 1.84e-58 194
Msa1386830 MtrunA17_Chr1g0189891 36.467 351 202 10 5 351 5 338 4.90e-58 192
Msa1386830 MtrunA17_Chr3g0120861 34.365 323 198 8 34 352 41 353 1.86e-56 188
Msa1386830 MtrunA17_Chr3g0077581 39.077 325 175 13 33 347 38 349 4.02e-56 188
Msa1386830 MtrunA17_Chr6g0457921 34.188 351 215 8 7 351 4 344 4.63e-56 187
Msa1386830 MtrunA17_Chr3g0099231 28.857 350 236 6 5 350 2 342 1.36e-55 187
Msa1386830 MtrunA17_Chr5g0396511 32.177 317 205 4 33 347 48 356 3.68e-54 183
Msa1386830 MtrunA17_Chr2g0320671 33.127 323 202 7 33 351 32 344 1.50e-53 181
Msa1386830 MtrunA17_Chr1g0156921 31.385 325 211 6 33 354 44 359 2.12e-52 178
Msa1386830 MtrunA17_Chr1g0156911 31.707 328 211 7 33 357 39 356 6.38e-52 176
Msa1386830 MtrunA17_Chr3g0085881 37.855 317 174 9 33 347 35 330 7.04e-52 176
Msa1386830 MtrunA17_Chr5g0438641 31.006 358 226 11 5 352 1 347 3.09e-51 174
Msa1386830 MtrunA17_Chr8g0370951 30.769 351 221 6 33 376 33 368 4.12e-51 175
Msa1386830 MtrunA17_Chr2g0284921 36.957 322 176 11 33 347 36 337 5.18e-51 174
Msa1386830 MtrunA17_Chr7g0215961 31.214 346 212 7 11 351 10 334 5.48e-51 174
Msa1386830 MtrunA17_Chr8g0341001 33.056 360 218 12 2 351 1 347 5.58e-51 174
Msa1386830 MtrunA17_Chr2g0285001 38.558 319 176 10 33 347 35 337 1.38e-50 174
Msa1386830 MtrunA17_Chr2g0284951 38.080 323 167 12 33 347 35 332 9.32e-50 171
Msa1386830 MtrunA17_Chr5g0432101 32.239 335 209 9 34 359 36 361 1.90e-49 170
Msa1386830 MtrunA17_Chr1g0156931 31.269 323 208 7 35 354 45 356 7.96e-49 168
Msa1386830 MtrunA17_Chr8g0371481 31.595 326 204 9 35 353 45 358 1.33e-48 168
Msa1386830 MtrunA17_Chr2g0284991 33.679 386 222 14 5 374 1 368 1.97e-48 168
Msa1386830 MtrunA17_Chr3g0142921 31.077 325 212 7 33 354 38 353 3.48e-48 167
Msa1386830 MtrunA17_Chr8g0371491 31.385 325 209 8 33 353 38 352 6.77e-48 166
Msa1386830 MtrunA17_Chr5g0405821 31.861 317 202 8 35 346 47 354 1.82e-47 165
Msa1386830 MtrunA17_Chr5g0420811 32.479 351 205 11 5 347 6 332 2.66e-47 164
Msa1386830 MtrunA17_Chr8g0371471 30.960 323 209 9 35 353 45 357 4.18e-47 164
Msa1386830 MtrunA17_Chr8g0380031 34.451 328 174 10 33 348 86 384 5.76e-47 165
Msa1386830 MtrunA17_Chr2g0301641 32.317 328 198 8 33 350 45 358 6.56e-47 164
Msa1386830 MtrunA17_Chr3g0142941 31.077 325 210 8 35 355 51 365 1.86e-46 162
Msa1386830 MtrunA17_Chr3g0085231 33.750 320 186 9 33 348 33 330 2.61e-46 161
Msa1386830 MtrunA17_Chr1g0156891 30.887 327 210 7 33 354 45 360 2.84e-46 162
Msa1386830 MtrunA17_Chr1g0156901 30.462 325 213 7 33 354 52 366 4.42e-46 161
Msa1386830 MtrunA17_Chr8g0344941 31.092 357 217 10 7 350 15 355 7.06e-46 161
Msa1386830 MtrunA17_Chr4g0027521 33.129 326 201 8 33 351 29 344 1.08e-45 160
Msa1386830 MtrunA17_Chr2g0330781 33.746 323 197 10 35 351 35 346 2.52e-45 159
Msa1386830 MtrunA17_Chr5g0405831 30.650 323 209 9 34 351 46 358 2.13e-43 154
Msa1386830 MtrunA17_Chr4g0046151 32.132 333 201 12 33 351 38 359 6.78e-43 153
Msa1386830 MtrunA17_Chr2g0283191 27.920 351 228 11 7 342 12 352 4.48e-40 145
Msa1386830 MtrunA17_Chr8g0349341 28.485 330 208 8 30 350 36 346 4.53e-40 145
Msa1386830 MtrunA17_Chr2g0284941 33.956 321 172 10 33 350 35 318 4.56e-40 145
Msa1386830 MtrunA17_Chr8g0349321 29.052 327 204 8 30 347 36 343 2.38e-39 143
Msa1386830 MtrunA17_Chr8g0344931 29.661 354 214 9 11 347 4 339 1.41e-38 141
Msa1386830 MtrunA17_Chr1g0157001 27.794 349 222 8 36 373 41 370 1.55e-38 141
Msa1386830 MtrunA17_Chr5g0437421 29.518 332 201 8 33 348 34 348 1.72e-38 141
Msa1386830 MtrunA17_Chr8g0370981 29.722 360 200 12 33 347 46 397 2.22e-38 142
Msa1386830 MtrunA17_Chr6g0459921 32.203 236 145 7 123 352 119 345 1.72e-37 138
Msa1386830 MtrunA17_Chr6g0455661 31.667 240 145 7 119 352 230 456 2.22e-36 137
Msa1386830 MtrunA17_Chr6g0455661 51.087 92 40 3 33 124 33 119 6.91e-16 79.0
Msa1386830 MtrunA17_Chr8g0349301 28.425 292 185 7 30 317 36 307 8.79e-33 125
Msa1386830 MtrunA17_Chr8g0349331 29.012 324 172 8 33 347 37 311 2.01e-31 121
Msa1386830 MtrunA17_Chr4g0027571 31.081 222 137 6 136 351 3 214 1.17e-28 111
Msa1386830 MtrunA17_Chr7g0226911 25.000 408 225 14 10 371 9 381 4.11e-28 113
Msa1386830 MtrunA17_Chr8g0370961 28.085 235 150 6 123 351 6 227 2.12e-26 105
Msa1386830 MtrunA17_Chr1g0160101 26.596 376 214 14 10 350 23 371 1.52e-25 106
Msa1386830 MtrunA17_Chr2g0283481 28.099 363 223 14 11 351 27 373 3.95e-25 105
Msa1386830 MtrunA17_Chr7g0226931 25.063 395 220 14 10 351 12 383 5.02e-25 105
Msa1386830 MtrunA17_Chr7g0271551 28.242 347 203 12 25 351 29 349 6.31e-25 104
Msa1386830 MtrunA17_Chr5g0440501 26.222 225 150 5 132 347 10 227 1.51e-24 100
Msa1386830 MtrunA17_Chr8g0381581 25.587 383 224 14 8 354 18 375 3.11e-24 102
Msa1386830 MtrunA17_Chr6g0450731 26.786 336 203 12 35 352 37 347 1.82e-23 100
Msa1386830 MtrunA17_Chr1g0178931 26.048 334 203 13 33 353 39 341 2.83e-22 96.7
Msa1386830 MtrunA17_Chr7g0275291 24.457 368 232 13 10 351 13 360 3.97e-22 96.7
Msa1386830 MtrunA17_Chr3g0104821 25.364 343 217 13 33 352 46 372 8.05e-22 95.9
Msa1386830 MtrunA17_Chr7g0229581 34.459 148 84 4 209 351 8 147 1.96e-21 90.1
Msa1386830 MtrunA17_Chr7g0254461 25.284 352 210 13 33 351 45 376 3.26e-21 94.4
Msa1386830 MtrunA17_Chr1g0198381 24.921 317 206 11 33 342 4 295 9.07e-21 91.7
Msa1386830 MtrunA17_Chr4g0057991 26.686 341 209 14 33 352 41 361 1.14e-20 92.4
Msa1386830 MtrunA17_Chr6g0450721 24.599 374 225 14 5 351 1 344 3.01e-20 90.9
Msa1386830 MtrunA17_Chr2g0283501 25.201 373 238 14 11 357 13 370 4.11e-20 90.9
Msa1386830 MtrunA17_Chr1g0178941 27.108 332 210 11 33 353 42 352 4.68e-20 90.5
Msa1386830 MtrunA17_Chr7g0226941 27.299 348 201 13 35 351 37 363 4.73e-20 90.9
Msa1386830 MtrunA17_Chr1g0159971 26.741 359 203 16 26 350 43 375 6.97e-20 90.5
Msa1386830 MtrunA17_Chr1g0189921 39.062 128 76 2 7 134 7 132 8.81e-20 85.1
Msa1386830 MtrunA17_Chr7g0266061 25.915 328 206 13 33 350 44 344 1.30e-19 89.0
Msa1386830 MtrunA17_Chr7g0273101 26.648 349 206 13 33 351 31 359 2.05e-19 89.0
Msa1386830 MtrunA17_Chr3g0096551 26.882 372 217 15 33 372 31 379 2.13e-19 89.0
Msa1386830 MtrunA17_Chr2g0283531 27.647 340 210 14 33 351 33 357 2.27e-19 88.6
Msa1386830 MtrunA17_Chr3g0093031 27.717 368 211 16 33 373 32 371 4.02e-19 87.8
Msa1386830 MtrunA17_Chr1g0198351 25.000 316 206 10 33 342 45 335 5.11e-19 87.4
Msa1386830 MtrunA17_Chr2g0301581 26.722 363 203 16 33 372 36 358 7.55e-19 87.0
Msa1386830 MtrunA17_Chr3g0112821 27.273 363 214 15 33 373 32 366 1.26e-18 86.3
Msa1386830 MtrunA17_Chr2g0283511 28.402 338 208 15 36 352 36 360 1.70e-18 86.3
Msa1386830 MtrunA17_Chr8g0347751 24.857 350 212 14 33 351 38 367 2.65e-18 85.5
Msa1386830 MtrunA17_Chr6g0450701 26.608 342 205 15 35 351 43 363 3.26e-18 85.1
Msa1386830 MtrunA17_Chr6g0450711 25.360 347 203 12 35 351 126 446 3.78e-18 85.9
Msa1386830 MtrunA17_Chr1g0160031 24.183 306 194 9 71 351 74 366 7.72e-18 84.3
Msa1386830 MtrunA17_Chr7g0229591 33.758 157 101 3 33 188 32 186 1.33e-17 80.9
Msa1386830 MtrunA17_Chr4g0018571 36.301 146 84 4 209 351 31 170 1.77e-17 79.7
Msa1386830 MtrunA17_Chr1g0159981 25.333 375 235 14 3 350 18 374 1.99e-17 83.2
Msa1386830 MtrunA17_Chr1g0160011 25.532 376 234 15 2 350 10 366 2.56e-17 82.8
Msa1386830 MtrunA17_Chr2g0301541 26.171 363 205 16 33 372 36 358 2.65e-17 82.4
Msa1386830 MtrunA17_Chr1g0191461 24.235 392 224 16 5 353 1 362 4.26e-17 82.0
Msa1386830 MtrunA17_Chr8g0370971 45.833 96 47 3 33 124 40 134 6.44e-17 77.8
Msa1386830 MtrunA17_Chr2g0321991 37.405 131 71 4 5 133 6 127 1.18e-16 75.9
Msa1386830 MtrunA17_Chr2g0308211 34.109 129 81 2 82 208 19 145 8.89e-16 73.9
Msa1386830 MtrunA17_Chr8g0352901 23.907 343 218 11 35 351 32 357 1.83e-15 77.0
Msa1386830 MtrunA17_Chr1g0189911 28.358 134 88 3 220 351 1 128 2.00e-14 70.1
Msa1386830 MtrunA17_Chr6g0469521 34.307 137 81 4 199 332 22 152 9.36e-14 68.6
Msa1386830 MtrunA17_Chr6g0469511 36.283 113 70 2 33 145 32 142 5.84e-12 63.2
Msa1386830 MtrunA17_Chr5g0432081 37.681 69 39 1 295 359 8 76 1.14e-11 60.5
Msa1386830 MtrunA17_Chr1g0198391 23.464 358 205 10 33 355 35 358 2.32e-11 64.7
Msa1386830 MtrunA17_Chr2g0284931 25.114 219 132 6 131 347 8 196 5.88e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386830 AT1G74460.1 66.755 376 112 4 5 378 1 365 0.0 517
Msa1386830 AT5G37690.1 44.092 347 186 3 5 351 1 339 1.45e-103 310
Msa1386830 AT5G37690.2 42.363 347 184 4 5 351 1 331 8.33e-96 290
Msa1386830 AT3G50400.1 40.549 328 179 8 33 351 36 356 1.25e-75 239
Msa1386830 AT5G15720.1 40.979 327 177 7 33 353 32 348 7.82e-74 234
Msa1386830 AT5G08460.1 39.752 322 180 6 32 347 50 363 3.99e-73 233
Msa1386830 AT2G23540.1 38.602 329 187 7 31 351 48 369 3.04e-72 231
Msa1386830 AT1G71250.1 35.735 347 205 7 12 349 16 353 1.73e-69 223
Msa1386830 AT5G41890.1 35.593 354 193 11 31 367 31 366 5.98e-68 219
Msa1386830 AT4G28780.1 35.465 344 212 4 10 351 10 345 2.44e-67 217
Msa1386830 AT1G71691.2 38.558 319 182 6 33 349 57 363 2.94e-66 215
Msa1386830 AT1G29660.1 37.026 343 199 9 11 347 10 341 6.41e-64 208
Msa1386830 AT1G29670.1 36.023 347 203 10 8 347 6 340 9.26e-64 208
Msa1386830 AT1G33811.1 36.415 357 198 10 10 347 3 349 2.13e-63 207
Msa1386830 AT3G04290.1 36.449 321 194 5 33 351 31 343 2.39e-63 207
Msa1386830 AT1G29670.2 35.920 348 204 10 7 347 73 408 1.05e-62 207
Msa1386830 AT5G33370.1 33.956 321 202 5 33 351 32 344 5.42e-59 196
Msa1386830 AT5G45670.1 34.769 325 198 8 33 353 31 345 2.68e-58 194
Msa1386830 AT4G18970.1 33.231 325 203 7 33 353 30 344 8.79e-58 192
Msa1386830 AT5G18430.1 34.675 323 199 6 33 351 30 344 1.26e-57 192
Msa1386830 AT5G15720.3 38.267 277 158 5 83 353 48 317 2.04e-57 191
Msa1386830 AT4G18970.2 33.231 325 203 7 33 353 30 344 4.55e-57 192
Msa1386830 AT4G10950.2 31.875 320 208 5 33 350 73 384 4.64e-56 189
Msa1386830 AT2G04570.1 32.370 346 218 9 10 351 9 342 4.72e-55 185
Msa1386830 AT4G26790.1 34.431 334 203 9 24 352 22 344 1.40e-54 184
Msa1386830 AT4G26790.2 34.431 334 203 9 24 352 22 344 1.40e-54 184
Msa1386830 AT3G14820.1 34.769 325 194 9 34 354 35 345 6.47e-54 182
Msa1386830 AT5G15720.2 41.379 261 143 6 33 287 32 288 1.40e-53 180
Msa1386830 AT2G42990.1 33.913 345 213 10 14 353 10 344 1.55e-53 181
Msa1386830 AT5G42170.1 32.716 324 201 9 35 354 54 364 4.78e-53 180
Msa1386830 AT4G10950.1 31.875 320 204 6 33 350 73 380 6.96e-53 181
Msa1386830 AT5G55050.1 33.528 343 205 9 22 351 26 358 4.51e-52 178
Msa1386830 AT1G71691.1 34.815 270 164 4 82 349 3 262 8.27e-52 174
Msa1386830 AT1G58430.1 32.515 326 206 7 33 353 37 353 3.13e-51 175
Msa1386830 AT2G19060.1 33.125 320 186 12 33 346 32 329 9.92e-51 173
Msa1386830 AT1G75890.2 31.692 325 209 7 34 354 50 365 1.31e-50 174
Msa1386830 AT2G30220.1 31.153 321 207 7 33 348 35 346 1.41e-50 173
Msa1386830 AT1G75890.3 31.692 325 209 7 34 354 79 394 2.86e-50 174
Msa1386830 AT2G19010.1 34.483 319 183 10 33 347 32 328 2.88e-50 172
Msa1386830 AT1G75890.1 31.454 337 207 9 34 354 50 378 6.28e-50 172
Msa1386830 AT2G19010.2 34.483 319 183 10 33 347 62 358 8.68e-50 172
Msa1386830 AT1G71691.3 39.844 256 146 5 33 286 57 306 2.90e-49 169
Msa1386830 AT4G16230.1 41.150 226 127 4 9 232 9 230 4.13e-49 166
Msa1386830 AT2G30310.1 30.124 322 209 8 33 348 36 347 4.82e-48 167
Msa1386830 AT3G16370.1 33.735 332 202 11 35 360 34 353 5.61e-48 166
Msa1386830 AT2G31540.1 31.056 322 208 7 34 350 38 350 1.25e-47 166
Msa1386830 AT1G59406.1 31.385 325 206 7 34 354 33 344 1.79e-47 165
Msa1386830 AT1G59030.1 31.385 325 206 7 34 354 33 344 1.79e-47 165
Msa1386830 AT1G58725.1 31.385 325 206 7 34 354 33 344 1.79e-47 165
Msa1386830 AT2G19050.1 33.542 319 186 11 33 347 33 329 1.94e-47 165
Msa1386830 AT1G20120.1 30.675 326 208 9 33 352 80 393 4.75e-47 165
Msa1386830 AT5G03810.1 29.944 354 232 9 5 353 5 347 2.16e-46 162
Msa1386830 AT5G22810.1 33.030 330 196 11 33 351 36 351 3.79e-46 162
Msa1386830 AT1G75900.1 31.902 326 203 9 35 354 47 359 5.96e-46 161
Msa1386830 AT1G75880.1 31.077 325 211 7 34 354 55 370 8.76e-46 161
Msa1386830 AT2G24560.1 30.124 322 211 7 34 350 37 349 3.15e-45 159
Msa1386830 AT5G45950.1 31.562 320 205 8 33 351 42 348 3.46e-45 159
Msa1386830 AT1G75880.2 31.385 325 209 8 34 354 55 369 1.24e-44 158
Msa1386830 AT5G03820.1 32.308 325 202 10 34 351 36 349 3.12e-44 157
Msa1386830 AT4G30140.1 34.161 322 180 13 33 348 35 330 3.95e-44 156
Msa1386830 AT5G03820.2 32.308 325 202 10 34 351 64 377 6.29e-44 156
Msa1386830 AT5G33370.2 34.241 257 165 4 33 287 32 286 7.54e-44 155
Msa1386830 AT1G58520.3 30.769 325 201 7 34 354 33 337 7.86e-44 155
Msa1386830 AT1G58525.1 30.769 325 201 7 34 354 33 337 7.86e-44 155
Msa1386830 AT2G03980.2 32.198 323 195 9 33 347 45 351 1.06e-43 155
Msa1386830 AT2G03980.3 32.198 323 195 9 33 347 45 351 1.06e-43 155
Msa1386830 AT2G03980.1 32.198 323 195 9 33 347 45 351 1.06e-43 155
Msa1386830 AT2G03980.4 32.198 323 195 9 33 347 45 351 1.06e-43 155
Msa1386830 AT5G45960.1 31.077 325 204 9 27 342 43 356 1.23e-43 155
Msa1386830 AT2G40250.1 30.816 331 209 7 33 354 38 357 2.27e-43 154
Msa1386830 AT1G06990.1 28.532 361 228 10 12 353 5 354 3.10e-43 154
Msa1386830 AT3G53100.1 31.481 324 208 8 34 353 32 345 8.01e-43 153
Msa1386830 AT1G71120.1 29.538 325 204 9 33 350 33 339 4.41e-42 151
Msa1386830 AT1G20132.1 30.909 330 206 10 33 354 63 378 5.54e-42 151
Msa1386830 AT1G53920.1 29.012 324 208 8 33 348 50 359 1.61e-40 147
Msa1386830 AT3G43570.1 28.882 322 189 8 34 354 33 315 2.84e-39 142
Msa1386830 AT3G14225.2 30.000 330 206 8 33 351 39 354 1.31e-38 142
Msa1386830 AT3G14225.1 30.120 332 207 8 33 351 39 358 2.23e-38 141
Msa1386830 AT1G73610.1 31.269 323 199 8 33 353 37 338 8.39e-38 139
Msa1386830 AT1G20135.1 28.824 340 220 8 9 346 7 326 1.06e-37 139
Msa1386830 AT5G63170.1 29.738 343 213 11 4 342 3 321 2.15e-37 138
Msa1386830 AT2G19050.2 35.887 248 145 8 33 277 33 269 2.40e-37 136
Msa1386830 AT5G40990.1 28.610 367 228 11 4 351 3 354 1.94e-36 136
Msa1386830 AT1G20130.2 29.552 335 211 11 33 354 186 508 3.45e-36 138
Msa1386830 AT1G20130.1 29.552 335 211 11 33 354 206 528 4.02e-36 138
Msa1386830 AT1G53990.1 28.611 360 218 10 10 351 7 345 1.08e-34 131
Msa1386830 AT2G24560.2 30.916 262 173 6 33 289 36 294 5.43e-34 128
Msa1386830 AT1G23500.1 30.816 331 189 11 33 352 37 338 1.06e-33 128
Msa1386830 AT1G75920.2 27.523 327 205 8 35 352 33 336 1.75e-33 127
Msa1386830 AT1G53940.2 28.182 330 212 8 33 351 41 356 2.81e-33 128
Msa1386830 AT3G43550.1 30.888 259 169 5 34 289 33 284 1.95e-32 123
Msa1386830 AT1G75920.1 26.608 342 204 9 35 352 28 346 1.54e-30 120
Msa1386830 AT1G54030.1 27.937 315 192 13 33 343 54 337 2.78e-29 117
Msa1386830 AT1G75920.4 26.490 302 191 7 60 352 29 308 3.69e-29 115
Msa1386830 AT1G75930.1 29.091 330 198 13 33 351 31 335 6.42e-29 115
Msa1386830 AT2G04020.1 36.683 199 116 4 33 229 45 235 1.16e-28 112
Msa1386830 AT2G04020.2 36.683 199 116 4 33 229 45 235 1.52e-28 114
Msa1386830 AT3G14220.1 28.704 324 202 12 31 348 32 332 1.95e-27 111
Msa1386830 AT2G31550.1 28.241 216 144 4 139 350 1 209 5.14e-27 107
Msa1386830 AT1G75910.1 25.466 322 219 6 35 352 32 336 5.25e-27 110
Msa1386830 AT3G14210.1 27.928 333 201 13 30 350 35 340 7.15e-27 110
Msa1386830 AT1G53940.1 27.675 271 184 5 33 298 41 304 4.65e-25 103
Msa1386830 AT1G54030.2 27.734 256 158 9 33 284 54 286 6.12e-24 101
Msa1386830 AT1G75920.3 25.076 327 182 9 35 352 33 305 9.70e-24 100
Msa1386830 AT2G27360.1 26.844 339 212 11 35 351 37 361 2.45e-23 100
Msa1386830 AT1G54010.1 24.501 351 227 12 7 351 21 339 3.16e-23 100
Msa1386830 AT3G27950.1 26.862 376 225 13 5 351 1 355 4.82e-23 99.8
Msa1386830 AT1G28580.1 28.571 343 200 14 35 351 41 364 1.41e-22 98.6
Msa1386830 AT5G14450.1 24.933 373 234 12 7 351 17 371 2.12e-22 97.8
Msa1386830 AT1G54000.1 24.286 350 233 11 10 351 14 339 2.57e-22 97.8
Msa1386830 AT3G05180.1 27.401 354 197 13 33 351 38 366 4.30e-22 97.1
Msa1386830 AT1G09390.1 25.779 353 206 12 25 351 31 353 7.39e-22 96.3
Msa1386830 AT1G54790.3 25.201 373 225 15 13 351 10 362 3.52e-21 94.4
Msa1386830 AT1G54020.2 24.062 320 213 10 33 348 35 328 3.98e-21 94.0
Msa1386830 AT3G48460.1 23.797 374 241 14 2 351 8 361 5.97e-21 93.6
Msa1386830 AT3G62280.1 25.893 336 205 12 35 351 40 350 7.76e-21 93.2
Msa1386830 AT5G03610.1 23.596 356 234 11 2 340 4 338 2.29e-20 91.7
Msa1386830 AT1G31550.2 26.549 339 213 11 35 352 40 363 3.47e-20 91.7
Msa1386830 AT1G67830.1 26.257 358 209 13 26 350 26 361 7.21e-20 90.5
Msa1386830 AT1G28570.1 26.705 352 215 14 26 352 29 362 1.79e-19 89.4
Msa1386830 AT4G16233.1 37.168 113 64 2 240 351 6 112 3.29e-19 83.6
Msa1386830 AT3G26430.1 26.346 353 202 14 33 350 33 362 4.51e-19 88.2
Msa1386830 AT4G01130.1 24.538 379 230 15 6 351 10 365 4.99e-19 88.2
Msa1386830 AT1G56670.1 24.403 377 232 14 2 351 6 356 7.09e-19 87.4
Msa1386830 AT1G31550.1 25.959 339 212 11 35 352 40 360 7.89e-19 87.8
Msa1386830 AT1G28590.1 25.876 371 231 15 9 352 11 364 1.00e-18 87.4
Msa1386830 AT1G28610.2 26.178 382 221 16 2 352 7 358 1.28e-18 87.0
Msa1386830 AT1G54790.1 25.140 358 200 14 33 351 33 361 3.40e-18 85.9
Msa1386830 AT3G09930.2 25.000 332 212 9 33 352 41 347 8.60e-18 84.3
Msa1386830 AT3G09930.1 25.000 332 212 9 33 352 41 347 8.60e-18 84.3
Msa1386830 AT4G16220.1 38.406 138 81 3 9 146 9 142 1.84e-17 81.6
Msa1386830 AT1G28660.1 23.925 372 236 14 8 351 10 362 2.48e-17 83.2
Msa1386830 AT1G28660.2 23.925 372 235 15 8 351 10 361 5.07e-17 82.4
Msa1386830 AT1G54790.2 25.132 378 201 16 33 351 33 387 1.25e-16 81.3
Msa1386830 AT1G28640.1 22.597 385 248 15 8 366 10 370 5.44e-16 79.3
Msa1386830 AT1G28670.1 22.432 370 245 13 8 351 10 363 4.35e-15 76.6
Msa1386830 AT3G14210.2 27.315 216 140 8 144 350 5 212 2.83e-14 72.8
Msa1386830 AT1G54020.1 21.805 266 180 9 87 348 1 242 2.14e-12 67.4
Msa1386830 AT1G54020.5 21.805 266 180 9 87 348 1 242 2.14e-12 67.4
Msa1386830 AT1G54020.3 21.805 266 180 9 87 348 1 242 2.14e-12 67.4
Msa1386830 AT3G62280.2 26.255 259 158 10 35 279 40 279 7.55e-12 65.9
Msa1386830 AT1G54020.4 21.762 193 140 4 159 348 9 193 2.31e-11 63.5

Find 81 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTTATTAAGAAATT+TGG 0.099606 tig0020872:+43415 Msa1386830:CDS
TATTATAGTAGCCATCATTT+TGG 0.216688 tig0020872:+40756 Msa1386830:CDS
TTAGAAGCAAAATTGGAAAA+AGG 0.224651 tig0020872:+42164 Msa1386830:CDS
CCAAATCTATAATTTGAATT+AGG 0.231906 tig0020872:-42657 None:intergenic
GACTCACCCTGCTGTTCCTT+TGG 0.240923 tig0020872:+43277 Msa1386830:CDS
ATCTTGAATGATTAATCTTC+TGG 0.245177 tig0020872:-43499 None:intergenic
CCTAATCACATTTGCTTTGT+AGG 0.258131 tig0020872:+43241 Msa1386830:CDS
GAACTAATTAGAAGCAAAAT+TGG 0.258541 tig0020872:+42157 Msa1386830:CDS
ACAGAAGCAAATATGTGTTT+TGG 0.275454 tig0020872:+43350 Msa1386830:CDS
GCTCAATATGTTGTTGCTTT+AGG 0.276115 tig0020872:+42211 Msa1386830:CDS
CCTAATTCAAATTATAGATT+TGG 0.286715 tig0020872:+42657 Msa1386830:CDS
GAGAAAGATATACTAATAAA+TGG 0.293441 tig0020872:+41936 Msa1386830:CDS
AAGGTTGTGCAATTCATATT+TGG 0.300714 tig0020872:+40805 Msa1386830:CDS
AAAGTTGACACTCACAAAAT+AGG 0.330676 tig0020872:-42006 None:intergenic
TGCCTCTTTACACTGATTCA+TGG 0.338743 tig0020872:+42263 Msa1386830:CDS
ACTCACCCTGCTGTTCCTTT+GGG 0.347351 tig0020872:+43278 Msa1386830:CDS
ACCTTCATGGATTACTTGAT+AGG 0.372440 tig0020872:+42301 Msa1386830:CDS
AGCAGGGTGAGTCTGAGTTT+TGG 0.389980 tig0020872:-43267 None:intergenic
CGCACAGTTGCTGATATAAT+AGG 0.392444 tig0020872:+40949 Msa1386830:CDS
CATATTTGGAGACTCTCTTT+CGG 0.399756 tig0020872:+40819 Msa1386830:CDS
CCTACAAAGCAAATGTGATT+AGG 0.400012 tig0020872:-43241 None:intergenic
AATGGATTGAACTATGCTTC+TGG 0.403982 tig0020872:+41954 Msa1386830:CDS
AATTAACATGGAGTTTAGTA+AGG 0.407205 tig0020872:+40726 Msa1386830:CDS
CCATTAGAGAACCTTCCATT+AGG 0.426371 tig0020872:-40925 None:intergenic
ATGGTATAGACATGGGTAAT+GGG 0.431513 tig0020872:+40899 Msa1386830:CDS
TCGTGAAAATGTAAACAAAC+TGG 0.438483 tig0020872:+42578 Msa1386830:CDS
CAAAGGGTACTTACTACAAC+CGG 0.438934 tig0020872:+42549 Msa1386830:CDS
CTAATCACATTTGCTTTGTA+GGG 0.439032 tig0020872:+43242 Msa1386830:CDS
ATACAATGATGAAACCTTCA+TGG 0.447803 tig0020872:+42288 Msa1386830:CDS
AAACAAATTGAGTTGTTTCA+AGG 0.447844 tig0020872:+42127 Msa1386830:CDS
GGAGACTCTCTTTCGGATGT+TGG 0.448034 tig0020872:+40826 Msa1386830:CDS
GGCGGTATCTTGAATGAAAC+TGG 0.450851 tig0020872:+41981 Msa1386830:CDS
ATCTACTTACCGTACTTAAG+TGG 0.453809 tig0020872:-42717 None:intergenic
ATGGGTAATGGGTTACCTAA+TGG 0.453961 tig0020872:+40910 Msa1386830:CDS
TTGAACTATGCTTCTGGTGG+TGG 0.481430 tig0020872:+41960 Msa1386830:CDS
TATGGTATAGACATGGGTAA+TGG 0.488782 tig0020872:+40898 Msa1386830:CDS
CCTAATGGAAGGTTCTCTAA+TGG 0.489722 tig0020872:+40925 Msa1386830:CDS
AATGATTAATCTTCTGGAGA+TGG 0.493565 tig0020872:-43493 None:intergenic
AACAAATTGAGTTGTTTCAA+GGG 0.493665 tig0020872:+42128 Msa1386830:CDS
AACTATGCTTCTGGTGGTGG+CGG 0.499017 tig0020872:+41963 Msa1386830:CDS
AATTCTCCCAAAGGAACAGC+AGG 0.501627 tig0020872:-43284 None:intergenic
TAGCTCAGGCAAGCTTGCCT+TGG 0.502282 tig0020872:+40875 Msa1386830:CDS
CAGGCAAGCTTGCCTTGGTA+TGG 0.506809 tig0020872:+40880 Msa1386830:CDS
GTTAAAGATGTGTCTAGGAC+TGG 0.508135 tig0020872:-41912 None:intergenic
GCTTGAAGGATGCCATTGTA+AGG 0.510195 tig0020872:+40786 Msa1386830:CDS
AACACTAAGAAGACAACTAA+AGG 0.515883 tig0020872:+42324 Msa1386830:CDS
TACTTCATAGTTTAGGAGCA+AGG 0.520215 tig0020872:+42481 Msa1386830:CDS
TGGGATGCATTCCACTTCAA+AGG 0.523034 tig0020872:+42532 Msa1386830:CDS
TGAAGTGGAATGCATCCCAT+TGG 0.531878 tig0020872:-42528 None:intergenic
GGAGCAATAGCAGCAGGTGC+TGG 0.537282 tig0020872:-43472 None:intergenic
TCTCAGTTAAAGATGTGTCT+AGG 0.537954 tig0020872:-41917 None:intergenic
GGGATGCATTCCACTTCAAA+GGG 0.542688 tig0020872:+42533 Msa1386830:CDS
GTCCATGAATCAGTGTAAAG+AGG 0.544547 tig0020872:-42265 None:intergenic
AAGCCCAATACCCAAAATGA+TGG 0.546627 tig0020872:-40767 None:intergenic
TCCTATCAAGTAATCCATGA+AGG 0.551770 tig0020872:-42302 None:intergenic
ATAGCAGCAGGTGCTGGTGA+AGG 0.556239 tig0020872:-43466 None:intergenic
AAGCGATCTAATAGATGACT+TGG 0.558580 tig0020872:+42623 Msa1386830:CDS
GGAGATGGAGCAATAGCAGC+AGG 0.561892 tig0020872:-43478 None:intergenic
TGCTGGTCTAATTCTCCCAA+AGG 0.564566 tig0020872:-43293 None:intergenic
TCTCTCTAGAAGCCTAGCTC+AGG 0.570010 tig0020872:+40861 Msa1386830:CDS
GCCTTGGTATGGTATAGACA+TGG 0.570735 tig0020872:+40891 Msa1386830:CDS
GTAGTAAGTACCCTTTGAAG+TGG 0.581219 tig0020872:-42543 None:intergenic
AAGGCAAGCTTGCCTGAGCT+AGG 0.591810 tig0020872:-40873 None:intergenic
TTGGGACGAGTACCATCCCT+CGG 0.595098 tig0020872:+43369 Msa1386830:CDS
AAAGATGTGTCTAGGACTGG+AGG 0.598576 tig0020872:-41909 None:intergenic
AAGATGTGTCTAGGACTGGA+GGG 0.599327 tig0020872:-41908 None:intergenic
GATGTGTCTAGGACTGGAGG+GGG 0.601710 tig0020872:-41906 None:intergenic
ATCAGACAAATTAATTAACA+TGG 0.603890 tig0020872:+40714 None:intergenic
AGATGTGTCTAGGACTGGAG+GGG 0.611093 tig0020872:-41907 None:intergenic
CATTAGCACTGTCCGAGGGA+TGG 0.613036 tig0020872:-43381 None:intergenic
TCTGAGCATAGTGTTGATGC+AGG 0.615872 tig0020872:-43328 None:intergenic
GAGCTCATTAGCACTGTCCG+AGG 0.619794 tig0020872:-43386 None:intergenic
CCTTGGTATGGTATAGACAT+GGG 0.621837 tig0020872:+40892 Msa1386830:CDS
AGCTCATTAGCACTGTCCGA+GGG 0.635773 tig0020872:-43385 None:intergenic
TGAATTGCACAACCTTACAA+TGG 0.641191 tig0020872:-40798 None:intergenic
GCAGGTACACATGTAAGTGC+TGG 0.643973 tig0020872:-43310 None:intergenic
GTAATGGGTTACCTAATGGA+AGG 0.648858 tig0020872:+40914 Msa1386830:CDS
GTGACAGTTTAGGCCTACCT+AGG 0.652728 tig0020872:+41883 Msa1386830:CDS
CCCATGTCTATACCATACCA+AGG 0.684296 tig0020872:-40892 None:intergenic
ATTCTCCCAAAGGAACAGCA+GGG 0.701343 tig0020872:-43283 None:intergenic
GGATTGAACTATGCTTCTGG+TGG 0.704487 tig0020872:+41957 Msa1386830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTTTTTTTTTTTTG+AGG + tig0020872:42407-42426 Msa1386830:intron 10.0%
!!! TTCACTAATATTTATTTTAT+AGG + tig0020872:43093-43112 Msa1386830:intron 10.0%
!!! ATAAAAATAGATTTTTGTCA+TGG - tig0020872:41058-41077 None:intergenic 15.0%
!! AATTAAAATAAGTTGTTTAG+CGG + tig0020872:41240-41259 Msa1386830:intron 15.0%
!! AATGAACTTATTAAGAAATT+TGG + tig0020872:43415-43434 Msa1386830:CDS 15.0%
!!! TAGGTAATTTTTTCACTTAT+TGG + tig0020872:40968-40987 Msa1386830:intron 20.0%
!!! TAACTTCTAAAAATCATGAT+GGG - tig0020872:41370-41389 None:intergenic 20.0%
!!! AAAATAGTAAGCTTATGTTT+TGG - tig0020872:41683-41702 None:intergenic 20.0%
!! GAGAAAGATATACTAATAAA+TGG + tig0020872:41936-41955 Msa1386830:CDS 20.0%
!! CCAAATCTATAATTTGAATT+AGG - tig0020872:42660-42679 None:intergenic 20.0%
!! CCTAATTCAAATTATAGATT+TGG + tig0020872:42657-42676 Msa1386830:CDS 20.0%
!!! ATTGATTATTGATTTGAGAT+CGG + tig0020872:42840-42859 Msa1386830:intron 20.0%
!! TTTCACCAAATTATCTTTAA+TGG + tig0020872:42879-42898 Msa1386830:intron 20.0%
!! TAGATCCATTAAAGATAATT+TGG - tig0020872:42887-42906 None:intergenic 20.0%
!! TTAAATAACACCAATAGTAA+TGG + tig0020872:43069-43088 Msa1386830:intron 20.0%
! AATTAACATGGAGTTTAGTA+AGG + tig0020872:40726-40745 Msa1386830:CDS 25.0%
!! TATTATAGTAGCCATCATTT+TGG + tig0020872:40756-40775 Msa1386830:CDS 25.0%
!! ATTATAGTAGCCATCATTTT+GGG + tig0020872:40757-40776 Msa1386830:CDS 25.0%
!! GTAACTTCTAAAAATCATGA+TGG - tig0020872:41371-41390 None:intergenic 25.0%
! AATCTACATTAGATTATGAG+AGG + tig0020872:41413-41432 Msa1386830:intron 25.0%
! TCAATAACCTTAAAAAGTCA+GGG - tig0020872:41779-41798 None:intergenic 25.0%
! ATCAATAACCTTAAAAAGTC+AGG - tig0020872:41780-41799 None:intergenic 25.0%
!! ATAGCAACACTGAAATATTT+TGG + tig0020872:42057-42076 Msa1386830:intron 25.0%
!! GTTTGTCTAGTGATAATTTT+TGG - tig0020872:42111-42130 None:intergenic 25.0%
!! AAACAAATTGAGTTGTTTCA+AGG + tig0020872:42127-42146 Msa1386830:CDS 25.0%
!! AACAAATTGAGTTGTTTCAA+GGG + tig0020872:42128-42147 Msa1386830:CDS 25.0%
! GAACTAATTAGAAGCAAAAT+TGG + tig0020872:42157-42176 Msa1386830:CDS 25.0%
! TTAGAAGCAAAATTGGAAAA+AGG + tig0020872:42164-42183 Msa1386830:CDS 25.0%
! TAGAAGCAAAATTGGAAAAA+GGG + tig0020872:42165-42184 Msa1386830:CDS 25.0%
!!! TTTTAGCTACTTCATAGTTT+AGG + tig0020872:42474-42493 Msa1386830:intron 25.0%
! TTTAATCACATGCATGTAAT+AGG + tig0020872:42766-42785 Msa1386830:intron 25.0%
!! GTAAATACTTGCATTTGTTA+AGG - tig0020872:42806-42825 None:intergenic 25.0%
! ATTCAGCTACAAAATTATCT+AGG + tig0020872:43158-43177 Msa1386830:intron 25.0%
! CAAAATTCTCTGTCTTAAAA+AGG + tig0020872:43194-43213 Msa1386830:intron 25.0%
AAGGTTGTGCAATTCATATT+TGG + tig0020872:40805-40824 Msa1386830:CDS 30.0%
! AAAGTAAAGTGCTCTATGTT+TGG + tig0020872:41122-41141 Msa1386830:intron 30.0%
! GCATTTGTTAATGAAGTGTT+TGG + tig0020872:41315-41334 Msa1386830:intron 30.0%
! AATTTTTCACGACAGACATT+TGG + tig0020872:41514-41533 Msa1386830:intron 30.0%
AAATAGTAAGTTGTGTGCTT+AGG - tig0020872:41563-41582 None:intergenic 30.0%
! CATAGATCTTATGCATTTTC+AGG + tig0020872:41861-41880 Msa1386830:intron 30.0%
AAAGTTGACACTCACAAAAT+AGG - tig0020872:42009-42028 None:intergenic 30.0%
! AACTTTTCTACTGTGTCTTA+AGG + tig0020872:42023-42042 Msa1386830:intron 30.0%
! ACTTTTCTACTGTGTCTTAA+GGG + tig0020872:42024-42043 Msa1386830:intron 30.0%
ATACAATGATGAAACCTTCA+TGG + tig0020872:42288-42307 Msa1386830:CDS 30.0%
AACACTAAGAAGACAACTAA+AGG + tig0020872:42324-42343 Msa1386830:CDS 30.0%
! TACATTTTCACGACAATTTC+CGG - tig0020872:42571-42590 None:intergenic 30.0%
TCGTGAAAATGTAAACAAAC+TGG + tig0020872:42578-42597 Msa1386830:CDS 30.0%
ATTAGCAATCCACTTAAGTA+CGG + tig0020872:42708-42727 Msa1386830:intron 30.0%
! TACTTGCATTTGTTAAGGTA+GGG - tig0020872:42801-42820 None:intergenic 30.0%
! ATACTTGCATTTGTTAAGGT+AGG - tig0020872:42802-42821 None:intergenic 30.0%
!! GTTTTAGGCGCAAATATTTT+TGG + tig0020872:43030-43049 Msa1386830:intron 30.0%
ATTAGTGAAGCCATTACTAT+TGG - tig0020872:43082-43101 None:intergenic 30.0%
!! GAGAATTTTGACACTTTTTG+AGG - tig0020872:43184-43203 None:intergenic 30.0%
!! AAAAGGTGTCACTTAAAAGT+TGG + tig0020872:43211-43230 Msa1386830:intron 30.0%
CTAATCACATTTGCTTTGTA+GGG + tig0020872:43242-43261 Msa1386830:CDS 30.0%
! ACAGAAGCAAATATGTGTTT+TGG + tig0020872:43350-43369 Msa1386830:CDS 30.0%
! CAGAAGCAAATATGTGTTTT+GGG + tig0020872:43351-43370 Msa1386830:CDS 30.0%
! AAATTTGGATTTTCACGTGA+CGG + tig0020872:43430-43449 Msa1386830:CDS 30.0%
!! TAGCCATCATTTTGGGTATT+GGG + tig0020872:40764-40783 Msa1386830:CDS 35.0%
TGAATTGCACAACCTTACAA+TGG - tig0020872:40801-40820 None:intergenic 35.0%
CATATTTGGAGACTCTCTTT+CGG + tig0020872:40819-40838 Msa1386830:CDS 35.0%
TATGGTATAGACATGGGTAA+TGG + tig0020872:40898-40917 Msa1386830:CDS 35.0%
ATGGTATAGACATGGGTAAT+GGG + tig0020872:40899-40918 Msa1386830:CDS 35.0%
CTCTATGTTTGGACTTTGTT+TGG + tig0020872:41133-41152 Msa1386830:intron 35.0%
! GTTAATGAAGTGTTTGGTTG+AGG + tig0020872:41321-41340 Msa1386830:intron 35.0%
TTGAGGATGAACAATGAGTT+TGG + tig0020872:41338-41357 Msa1386830:intron 35.0%
CTCAAAAGATCATCACATTG+AGG + tig0020872:41438-41457 Msa1386830:intron 35.0%
TTTCCACAATAGACAATGTC+CGG + tig0020872:41638-41657 Msa1386830:intron 35.0%
! GAATTAGCCCTGACTTTTTA+AGG + tig0020872:41769-41788 Msa1386830:intron 35.0%
CTAATTTCAAACCTGTTCAC+AGG - tig0020872:41817-41836 None:intergenic 35.0%
TCTCAGTTAAAGATGTGTCT+AGG - tig0020872:41920-41939 None:intergenic 35.0%
!! AATGGATTGAACTATGCTTC+TGG + tig0020872:41954-41973 Msa1386830:CDS 35.0%
!! GCTCAATATGTTGTTGCTTT+AGG + tig0020872:42211-42230 Msa1386830:CDS 35.0%
! ACCTTCATGGATTACTTGAT+AGG + tig0020872:42301-42320 Msa1386830:CDS 35.0%
TCCTATCAAGTAATCCATGA+AGG - tig0020872:42305-42324 None:intergenic 35.0%
TACTTCATAGTTTAGGAGCA+AGG + tig0020872:42481-42500 Msa1386830:CDS 35.0%
!! CAAGGCAATTGATGCTTTTT+GGG + tig0020872:42499-42518 Msa1386830:CDS 35.0%
AAGCGATCTAATAGATGACT+TGG + tig0020872:42623-42642 Msa1386830:CDS 35.0%
ATCTACTTACCGTACTTAAG+TGG - tig0020872:42720-42739 None:intergenic 35.0%
AAGTGTCAATAGCATGGATT+TGG - tig0020872:42967-42986 None:intergenic 35.0%
TTGGTTAAGTGTCAATAGCA+TGG - tig0020872:42973-42992 None:intergenic 35.0%
! GTGACAAAAGCAAGAGTTTT+AGG + tig0020872:43015-43034 Msa1386830:intron 35.0%
CCTACAAAGCAAATGTGATT+AGG - tig0020872:43244-43263 None:intergenic 35.0%
CCTAATCACATTTGCTTTGT+AGG + tig0020872:43241-43260 Msa1386830:CDS 35.0%
!! GTAGCCATCATTTTGGGTAT+TGG + tig0020872:40763-40782 Msa1386830:CDS 40.0%
AAGCCCAATACCCAAAATGA+TGG - tig0020872:40770-40789 None:intergenic 40.0%
!!! ATTTTGGGTATTGGGCTTGA+AGG + tig0020872:40772-40791 Msa1386830:CDS 40.0%
CCTTGGTATGGTATAGACAT+GGG + tig0020872:40892-40911 Msa1386830:CDS 40.0%
!! ATGGGTAATGGGTTACCTAA+TGG + tig0020872:40910-40929 Msa1386830:CDS 40.0%
!! GTAATGGGTTACCTAATGGA+AGG + tig0020872:40914-40933 Msa1386830:CDS 40.0%
CCATTAGAGAACCTTCCATT+AGG - tig0020872:40928-40947 None:intergenic 40.0%
CCTAATGGAAGGTTCTCTAA+TGG + tig0020872:40925-40944 Msa1386830:CDS 40.0%
CGCACAGTTGCTGATATAAT+AGG + tig0020872:40949-40968 Msa1386830:CDS 40.0%
!! ATTATTTTGTGTCCGAGACG+CGG + tig0020872:41271-41290 Msa1386830:intron 40.0%
AGCAATCACACAAGTGAAGT+TGG + tig0020872:41465-41484 Msa1386830:intron 40.0%
! TTTTCACGACAGACATTTGG+CGG + tig0020872:41517-41536 Msa1386830:intron 40.0%
!! TTTTGGAGAGATTCGCTTAC+CGG - tig0020872:41666-41685 None:intergenic 40.0%
TTGTGAATCAACCTGTGAAC+AGG + tig0020872:41803-41822 Msa1386830:intron 40.0%
!!! GCATTTTCAGGTGACAGTTT+AGG + tig0020872:41873-41892 Msa1386830:intron 40.0%
! GTTAAAGATGTGTCTAGGAC+TGG - tig0020872:41915-41934 None:intergenic 40.0%
CAAAATTGGAAAAAGGGCTG+CGG + tig0020872:42171-42190 Msa1386830:CDS 40.0%
!! TGCCTCTTTACACTGATTCA+TGG + tig0020872:42263-42282 Msa1386830:CDS 40.0%
GTCCATGAATCAGTGTAAAG+AGG - tig0020872:42268-42287 None:intergenic 40.0%
! GCAAGGCAATTGATGCTTTT+TGG + tig0020872:42498-42517 Msa1386830:CDS 40.0%
!! CAATTGATGCTTTTTGGGCT+GGG + tig0020872:42504-42523 Msa1386830:CDS 40.0%
! GTAGTAAGTACCCTTTGAAG+TGG - tig0020872:42546-42565 None:intergenic 40.0%
!! CAAAGGGTACTTACTACAAC+CGG + tig0020872:42549-42568 Msa1386830:CDS 40.0%
ACCAAATGATGCTCATACCA+AGG + tig0020872:42988-43007 Msa1386830:intron 40.0%
CCAAATGATGCTCATACCAA+GGG + tig0020872:42989-43008 Msa1386830:intron 40.0%
!! TTGCTTTTGTCACAAACCCT+TGG - tig0020872:43008-43027 None:intergenic 40.0%
GCTTGAAGGATGCCATTGTA+AGG + tig0020872:40786-40805 Msa1386830:CDS 45.0%
GCCTTGGTATGGTATAGACA+TGG + tig0020872:40891-40910 Msa1386830:CDS 45.0%
CCCATGTCTATACCATACCA+AGG - tig0020872:40895-40914 None:intergenic 45.0%
TTTGGAGAGATTCGCTTACC+GGG - tig0020872:41665-41684 None:intergenic 45.0%
! AAGATGTGTCTAGGACTGGA+GGG - tig0020872:41911-41930 None:intergenic 45.0%
! AAAGATGTGTCTAGGACTGG+AGG - tig0020872:41912-41931 None:intergenic 45.0%
GGATTGAACTATGCTTCTGG+TGG + tig0020872:41957-41976 Msa1386830:CDS 45.0%
TTGAACTATGCTTCTGGTGG+TGG + tig0020872:41960-41979 Msa1386830:CDS 45.0%
GGCGGTATCTTGAATGAAAC+TGG + tig0020872:41981-42000 Msa1386830:CDS 45.0%
!! GCAATTGATGCTTTTTGGGC+TGG + tig0020872:42503-42522 Msa1386830:CDS 45.0%
TGAAGTGGAATGCATCCCAT+TGG - tig0020872:42531-42550 None:intergenic 45.0%
TGGGATGCATTCCACTTCAA+AGG + tig0020872:42532-42551 Msa1386830:CDS 45.0%
GGGATGCATTCCACTTCAAA+GGG + tig0020872:42533-42552 Msa1386830:CDS 45.0%
CCCTTGGTATGAGCATCATT+TGG - tig0020872:42992-43011 None:intergenic 45.0%
ATTCTCCCAAAGGAACAGCA+GGG - tig0020872:43286-43305 None:intergenic 45.0%
AATTCTCCCAAAGGAACAGC+AGG - tig0020872:43287-43306 None:intergenic 45.0%
! TGCTGGTCTAATTCTCCCAA+AGG - tig0020872:43296-43315 None:intergenic 45.0%
!! TCTGAGCATAGTGTTGATGC+AGG - tig0020872:43331-43350 None:intergenic 45.0%
!!! TTATTTAAAATATAAATTTC+GGG - tig0020872:43057-43076 None:intergenic 5.0%
!!! GTTATTTAAAATATAAATTT+CGG - tig0020872:43058-43077 None:intergenic 5.0%
GGAGACTCTCTTTCGGATGT+TGG + tig0020872:40826-40845 Msa1386830:CDS 50.0%
! TCTCTCTAGAAGCCTAGCTC+AGG + tig0020872:40861-40880 Msa1386830:CDS 50.0%
GGACCGGACATTGTCTATTG+TGG - tig0020872:41644-41663 None:intergenic 50.0%
CAATAGACAATGTCCGGTCC+CGG + tig0020872:41644-41663 Msa1386830:intron 50.0%
GTGACAGTTTAGGCCTACCT+AGG + tig0020872:41883-41902 Msa1386830:CDS 50.0%
! AGATGTGTCTAGGACTGGAG+GGG - tig0020872:41910-41929 None:intergenic 50.0%
!! AACTATGCTTCTGGTGGTGG+CGG + tig0020872:41963-41982 Msa1386830:CDS 50.0%
!! CTTTTTGGGCTGGGTCCAAT+GGG + tig0020872:42513-42532 Msa1386830:CDS 50.0%
! AGCAGGGTGAGTCTGAGTTT+TGG - tig0020872:43270-43289 None:intergenic 50.0%
ACTCACCCTGCTGTTCCTTT+GGG + tig0020872:43278-43297 Msa1386830:CDS 50.0%
GCAGGTACACATGTAAGTGC+TGG - tig0020872:43313-43332 None:intergenic 50.0%
AGCTCATTAGCACTGTCCGA+GGG - tig0020872:43388-43407 None:intergenic 50.0%
AAGGCAAGCTTGCCTGAGCT+AGG - tig0020872:40876-40895 None:intergenic 55.0%
TAGCTCAGGCAAGCTTGCCT+TGG + tig0020872:40875-40894 Msa1386830:CDS 55.0%
CAGGCAAGCTTGCCTTGGTA+TGG + tig0020872:40880-40899 Msa1386830:CDS 55.0%
GCTTCTCAATTGCCGCGTCT+CGG - tig0020872:41286-41305 None:intergenic 55.0%
AGAGATTCGCTTACCGGGAC+CGG - tig0020872:41660-41679 None:intergenic 55.0%
! GATGTGTCTAGGACTGGAGG+GGG - tig0020872:41909-41928 None:intergenic 55.0%
!! GCTTTTTGGGCTGGGTCCAA+TGG + tig0020872:42512-42531 Msa1386830:CDS 55.0%
GACTCACCCTGCTGTTCCTT+TGG + tig0020872:43277-43296 Msa1386830:CDS 55.0%
TTGGGACGAGTACCATCCCT+CGG + tig0020872:43369-43388 Msa1386830:CDS 55.0%
CATTAGCACTGTCCGAGGGA+TGG - tig0020872:43384-43403 None:intergenic 55.0%
GAGCTCATTAGCACTGTCCG+AGG - tig0020872:43389-43408 None:intergenic 55.0%
!! ATAGCAGCAGGTGCTGGTGA+AGG - tig0020872:43469-43488 None:intergenic 55.0%
GGAGATGGAGCAATAGCAGC+AGG - tig0020872:43481-43500 None:intergenic 55.0%
GGAGCAATAGCAGCAGGTGC+TGG - tig0020872:43475-43494 None:intergenic 60.0%
! TCTAGGACTGGAGGGGGCCT+AGG - tig0020872:41903-41922 None:intergenic 65.0%
GGACTGGAGGGGGCCTAGGT+AGG - tig0020872:41899-41918 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020872 gene 40721 43510 40721 ID=Msa1386830;Name=Msa1386830
tig0020872 mRNA 40721 43510 40721 ID=Msa1386830-mRNA-1;Parent=Msa1386830;Name=Msa1386830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.75|0.4|1|0.75|0.8|5|0|378
tig0020872 exon 40721 40970 40721 ID=Msa1386830-mRNA-1:exon:10371;Parent=Msa1386830-mRNA-1
tig0020872 exon 41883 42013 41883 ID=Msa1386830-mRNA-1:exon:10372;Parent=Msa1386830-mRNA-1
tig0020872 exon 42106 42345 42106 ID=Msa1386830-mRNA-1:exon:10373;Parent=Msa1386830-mRNA-1
tig0020872 exon 42480 42724 42480 ID=Msa1386830-mRNA-1:exon:10374;Parent=Msa1386830-mRNA-1
tig0020872 exon 43240 43510 43240 ID=Msa1386830-mRNA-1:exon:10375;Parent=Msa1386830-mRNA-1
tig0020872 CDS 40721 40970 40721 ID=Msa1386830-mRNA-1:cds;Parent=Msa1386830-mRNA-1
tig0020872 CDS 41883 42013 41883 ID=Msa1386830-mRNA-1:cds;Parent=Msa1386830-mRNA-1
tig0020872 CDS 42106 42345 42106 ID=Msa1386830-mRNA-1:cds;Parent=Msa1386830-mRNA-1
tig0020872 CDS 42480 42724 42480 ID=Msa1386830-mRNA-1:cds;Parent=Msa1386830-mRNA-1
tig0020872 CDS 43240 43510 43240 ID=Msa1386830-mRNA-1:cds;Parent=Msa1386830-mRNA-1
Gene Sequence

>Msa1386830

AAATTAATTAACATGGAGTTTAGTAAGGTGATAGTTATTATAGTAGCCATCATTTTGGGTATTGGGCTTGAAGGATGCCATTGTAAGGTTGTGCAATTCATATTTGGAGACTCTCTTTCGGATGTTGGAAACAACATGCATCTCTCTAGAAGCCTAGCTCAGGCAAGCTTGCCTTGGTATGGTATAGACATGGGTAATGGGTTACCTAATGGAAGGTTCTCTAATGGACGCACAGTTGCTGATATAATAGGTGACAGTTTAGGCCTACCTAGGCCCCCTCCAGTCCTAGACACATCTTTAACTGAGAAAGATATACTAATAAATGGATTGAACTATGCTTCTGGTGGTGGCGGTATCTTGAATGAAACTGGCACCTATTTTATCCAAAAATTATCACTAGACAAACAAATTGAGTTGTTTCAAGGGACACAAGAACTAATTAGAAGCAAAATTGGAAAAAGGGCTGCGGACAAATTCTTTAGAGAAGCTCAATATGTTGTTGCTTTAGGTAGCAATGACTTTATCAACAACTACTTGATGCCTCTTTACACTGATTCATGGACATACAATGATGAAACCTTCATGGATTACTTGATAGGAACACTAAGAAGACAACTAAAGCTACTTCATAGTTTAGGAGCAAGGCAATTGATGCTTTTTGGGCTGGGTCCAATGGGATGCATTCCACTTCAAAGGGTACTTACTACAACCGGAAATTGTCGTGAAAATGTAAACAAACTGGCTCTTAGCTTTAATAAAGCTTCAAGCGATCTAATAGATGACTTGGTTAAGCAACTTCCTAATTCAAATTATAGATTTGGAGATGCATATGATGTTGTCTCTGATTTGATTAGCAATCCACTTAAACCTAATCACATTTGCTTTGTAGGGTTCCAAAACTCAGACTCACCCTGCTGTTCCTTTGGGAGAATTAGACCAGCACTTACATGTGTACCTGCATCAACACTATGCTCAGACAGAAGCAAATATGTGTTTTGGGACGAGTACCATCCCTCGGACAGTGCTAATGAGCTCATTGCAAATGAACTTATTAAGAAATTTGGATTTTCACGTGACGGTCAAAATGCTGCTCCTTCACCAGCACCTGCTGCTATTGCTCCATCTCCAGAAGATTAA

Protein sequence

>Msa1386830

KLINMEFSKVIVIIVAIILGIGLEGCHCKVVQFIFGDSLSDVGNNMHLSRSLAQASLPWYGIDMGNGLPNGRFSNGRTVADIIGDSLGLPRPPPVLDTSLTEKDILINGLNYASGGGGILNETGTYFIQKLSLDKQIELFQGTQELIRSKIGKRAADKFFREAQYVVALGSNDFINNYLMPLYTDSWTYNDETFMDYLIGTLRRQLKLLHSLGARQLMLFGLGPMGCIPLQRVLTTTGNCRENVNKLALSFNKASSDLIDDLVKQLPNSNYRFGDAYDVVSDLISNPLKPNHICFVGFQNSDSPCCSFGRIRPALTCVPASTLCSDRSKYVFWDEYHPSDSANELIANELIKKFGFSRDGQNAAPSPAPAAIAPSPED*