Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177140 | sp|Q921I1|TRFE_MOUSE | 32.229 | 332 | 179 | 18 | 112 | 425 | 354 | 657 | 3.30e-29 | 125 |
| Msa0177140 | sp|Q921I1|TRFE_MOUSE | 27.838 | 370 | 223 | 15 | 115 | 463 | 22 | 368 | 4.46e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177140 | G7I3C5 | 94.865 | 370 | 14 | 1 | 90 | 454 | 3 | 372 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0177140 | 0.810304 | 1.232247e-50 | -8.615850e-47 |
| Msa0029990 | Msa0177140 | 0.804087 | 2.556538e-49 | -8.615850e-47 |
| Msa0037030 | Msa0177140 | 0.824481 | 7.886350e-54 | -8.615850e-47 |
| Msa0071840 | Msa0177140 | 0.802648 | 5.078884e-49 | -8.615850e-47 |
| Msa0155180 | Msa0177140 | 0.809902 | 1.504112e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177140 | MtrunA17_Chr1g0199911 | 94.769 | 325 | 12 | 1 | 90 | 409 | 3 | 327 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 148 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAAGTGGCTTTGGCTTC+TGG | 0.139532 | 1_4:-64006746 | None:intergenic |
| CATGGTCAACAAAGTCTCTT+AGG | 0.218867 | 1_4:+64005930 | Msa0177140:CDS |
| AAACAACAAAGTCTCTATTT+TGG | 0.233000 | 1_4:-64006981 | None:intergenic |
| TGTCATTAGCTCATCATATT+AGG | 0.236916 | 1_4:-64007097 | None:intergenic |
| TGCAACAGCTTCATAGGTTT+TGG | 0.237405 | 1_4:-64005525 | None:intergenic |
| AAGGACTAGACATGATTAAA+AGG | 0.238659 | 1_4:+64006660 | Msa0177140:CDS |
| GCGGCTCCAATATCGGAAAA+TGG | 0.240046 | 1_4:+64004894 | Msa0177140:CDS |
| GGCAATGGTGGGTCTATTTC+CGG | 0.269331 | 1_4:+64004810 | Msa0177140:CDS |
| AAGGGTCACGAGGTTGTATC+TGG | 0.269966 | 1_4:+64006679 | Msa0177140:CDS |
| GTCATCCGTCGCCGGATCAT+TGG | 0.270158 | 1_4:-64004937 | None:intergenic |
| TACTGCCTTGTTCTATTCTA+TGG | 0.274106 | 1_4:+64005889 | Msa0177140:CDS |
| AATGAAACCTGCAATGAAAT+AGG | 0.296785 | 1_4:+64005791 | Msa0177140:CDS |
| GTGAAGTGGCTTTGGCTTCT+GGG | 0.302414 | 1_4:-64006745 | None:intergenic |
| TGTGCCATTATCACATTTGC+AGG | 0.322187 | 1_4:-64006276 | None:intergenic |
| ATACAAGCCTATTTCATTGC+AGG | 0.329472 | 1_4:-64005798 | None:intergenic |
| CGATATTGGAGCCGCAGCTT+TGG | 0.332174 | 1_4:-64004886 | None:intergenic |
| CAAGAATGGAGAAGCAGATT+TGG | 0.336001 | 1_4:+64005418 | Msa0177140:CDS |
| TTTAATCATGTCTAGTCCTT+GGG | 0.353400 | 1_4:-64006657 | None:intergenic |
| GTGCTTGATTTCTTTATAGT+AGG | 0.358155 | 1_4:+64007138 | Msa0177140:three_prime_UTR |
| CAAAGCTGCGGCTCCAATAT+CGG | 0.360232 | 1_4:+64004887 | Msa0177140:CDS |
| TGTTGTATGTGAAGTGGCTT+TGG | 0.366669 | 1_4:-64006753 | None:intergenic |
| GATATTGGAGCCGCAGCTTT+GGG | 0.373212 | 1_4:-64004885 | None:intergenic |
| GAGACTTTGTTGACCATGAT+TGG | 0.374237 | 1_4:-64005925 | None:intergenic |
| TACAACTGCAACAGCTTCAT+AGG | 0.375227 | 1_4:-64005531 | None:intergenic |
| TTAGGTATCTTTGCCCTAAA+GGG | 0.379845 | 1_4:+64006043 | Msa0177140:intron |
| AACATTGACGAATACTAGTT+TGG | 0.381344 | 1_4:+64006338 | Msa0177140:CDS |
| GACATGCATTCTCTTCTTGT+TGG | 0.385917 | 1_4:-64006310 | None:intergenic |
| CGGCTCCAATATCGGAAAAT+GGG | 0.387560 | 1_4:+64004895 | Msa0177140:CDS |
| TTGTCTGATGTGTGCAGAAT+TGG | 0.390343 | 1_4:+64007068 | Msa0177140:three_prime_UTR |
| TTGGTCAAAAGAGAACAAAA+TGG | 0.399291 | 1_4:-64004453 | None:intergenic |
| CATACAACAGATAACGTTCC+AGG | 0.403749 | 1_4:+64006767 | Msa0177140:CDS |
| ACATGCATTCTCTTCTTGTT+GGG | 0.406977 | 1_4:-64006309 | None:intergenic |
| TAACGGGCTACGTGTGGAAA+TGG | 0.408628 | 1_4:+64005033 | Msa0177140:CDS |
| AAGAAGAGAAACAGTGTTGT+TGG | 0.411460 | 1_4:-64004486 | None:intergenic |
| AGGTGTCTAGTAGAGGAGTT+GGG | 0.413895 | 1_4:+64005842 | Msa0177140:CDS |
| CTGTCATCACTCTCCATTCA+AGG | 0.418562 | 1_4:+64004528 | Msa0177140:CDS |
| TAGGTGTCTAGTAGAGGAGT+TGG | 0.421638 | 1_4:+64005841 | Msa0177140:CDS |
| AATAAAGTAGTCCGGTTTGT+TGG | 0.428525 | 1_4:+64007177 | Msa0177140:three_prime_UTR |
| CTCACCCCTGATGCTACTAT+TGG | 0.428861 | 1_4:+64006941 | Msa0177140:CDS |
| TGTTCCTGCAAATGTGATAA+TGG | 0.432281 | 1_4:+64006272 | Msa0177140:CDS |
| GAAAATGGGGTGGGAGGCCA+TGG | 0.434127 | 1_4:+64004909 | Msa0177140:CDS |
| TAAGTACCAATAGTAGCATC+AGG | 0.438718 | 1_4:-64006947 | None:intergenic |
| TCATCCGTCGCCGGATCATT+GGG | 0.443613 | 1_4:-64004936 | None:intergenic |
| CCTCCATCACCACTGGCGAC+GGG | 0.445644 | 1_4:-64004845 | None:intergenic |
| AATGAAATAGGCTTGTATTC+TGG | 0.456061 | 1_4:+64005803 | Msa0177140:CDS |
| CCATGGCACACCCAATGATC+CGG | 0.457452 | 1_4:+64004926 | Msa0177140:CDS |
| TCCTCCATCACCACTGGCGA+CGG | 0.457816 | 1_4:-64004846 | None:intergenic |
| TTTAGGTATCTTTGCCCTAA+AGG | 0.460465 | 1_4:+64006042 | Msa0177140:intron |
| GGTTGTTGCGAATATCGATT+GGG | 0.462387 | 1_4:-64006377 | None:intergenic |
| GTTGACCATGATTGGTTATG+AGG | 0.462653 | 1_4:-64005917 | None:intergenic |
| TGATGGAGGAGTGGCACAAT+AGG | 0.464742 | 1_4:+64004859 | Msa0177140:CDS |
| CGACGGATGACGGCGGAGTA+AGG | 0.464895 | 1_4:+64004949 | Msa0177140:CDS |
| GCATCCACTGGAGGAAGTGC+TGG | 0.476671 | 1_4:-64004777 | None:intergenic |
| AGAAGAGAAACAGTGTTGTT+GGG | 0.479019 | 1_4:-64004485 | None:intergenic |
| TGATTGACTCTAGACAATCC+TGG | 0.479542 | 1_4:-64005397 | None:intergenic |
| GCCTTGTTCTATTCTATGGA+GGG | 0.487961 | 1_4:+64005893 | Msa0177140:CDS |
| AGCTTGGTGATGGCAATGGC+TGG | 0.489751 | 1_4:-64004692 | None:intergenic |
| CATATTGTTGTTGATGTCAA+CGG | 0.492151 | 1_4:-64004408 | None:intergenic |
| TGGTCAAAAGAGAACAAAAT+GGG | 0.498456 | 1_4:-64004452 | None:intergenic |
| GGAGGTTACTCCACAGCAGC+AGG | 0.505464 | 1_4:+64005623 | Msa0177140:CDS |
| CTCCATCACCACTGGCGACG+GGG | 0.508711 | 1_4:-64004844 | None:intergenic |
| AAGGAGTGTCAGTCCTTTGT+CGG | 0.509813 | 1_4:+64004996 | Msa0177140:CDS |
| CCGGATCATTGGGTGTGCCA+TGG | 0.510588 | 1_4:-64004926 | None:intergenic |
| AATGATCCGGCGACGGATGA+CGG | 0.511835 | 1_4:+64004939 | Msa0177140:CDS |
| TGTTGTTGGGATCTGCATCT+TGG | 0.513681 | 1_4:-64004472 | None:intergenic |
| GGTGTCATTAACCAACTAAC+GGG | 0.514807 | 1_4:+64005017 | Msa0177140:CDS |
| ATGATCATAATATATCTCAT+TGG | 0.514942 | 1_4:-64005501 | None:intergenic |
| ATAATATATCTCATTGGCTA+TGG | 0.515079 | 1_4:-64005495 | None:intergenic |
| GAGTGATGACAGAAGAAGAG+AGG | 0.516282 | 1_4:-64004517 | None:intergenic |
| TCCATCACCACTGGCGACGG+GGG | 0.521238 | 1_4:-64004843 | None:intergenic |
| TCCACACGTAGCCCGTTAGT+TGG | 0.521998 | 1_4:-64005028 | None:intergenic |
| CACCTTTGTTGCAGTACCCA+AGG | 0.523484 | 1_4:+64006641 | Msa0177140:intron |
| ACTCCGCCGTCATCCGTCGC+CGG | 0.530133 | 1_4:-64004945 | None:intergenic |
| CCACTACCTTCTGCATCCAC+TGG | 0.530575 | 1_4:-64004789 | None:intergenic |
| TGTCTAGAGTCAATCAAGAA+TGG | 0.532295 | 1_4:+64005404 | Msa0177140:CDS |
| AGGTCTAGAATCCAACAAAC+CGG | 0.533196 | 1_4:-64007188 | None:intergenic |
| AGGTTGTTGCGAATATCGAT+TGG | 0.533382 | 1_4:-64006378 | None:intergenic |
| GCCACCAGCACTTCCTCCAG+TGG | 0.534678 | 1_4:+64004773 | Msa0177140:CDS |
| TCCAATATCGGAAAATGGGG+TGG | 0.535404 | 1_4:+64004899 | Msa0177140:CDS |
| ATGGTCAACAAAGTCTCTTA+GGG | 0.536352 | 1_4:+64005931 | Msa0177140:CDS |
| GATTGACTCTAGACAATCCT+GGG | 0.539227 | 1_4:-64005396 | None:intergenic |
| AGGGTCACGAGGTTGTATCT+GGG | 0.539966 | 1_4:+64006680 | Msa0177140:CDS |
| GTAGTTCCATCCTGCTGCTG+TGG | 0.542388 | 1_4:-64005633 | None:intergenic |
| AAAACTTACGAACAATCTGC+AGG | 0.544949 | 1_4:-64006090 | None:intergenic |
| CCATTGCCATCACCAAGCTC+TGG | 0.546468 | 1_4:+64004696 | Msa0177140:CDS |
| TGCCACTCCTCCATCACCAC+TGG | 0.547171 | 1_4:-64004852 | None:intergenic |
| CTGTTGCAGTTGTAAACAGA+AGG | 0.548368 | 1_4:+64005540 | Msa0177140:CDS |
| AGGACTAGACATGATTAAAA+GGG | 0.550810 | 1_4:+64006661 | Msa0177140:CDS |
| ATTGACGAATACTAGTTTGG+TGG | 0.551045 | 1_4:+64006341 | Msa0177140:CDS |
| GGAAGTGCTGGTGGCAGAAG+AGG | 0.551309 | 1_4:-64004765 | None:intergenic |
| TGCCTTGTTCTATTCTATGG+AGG | 0.553128 | 1_4:+64005892 | Msa0177140:CDS |
| AGGGACCTCATAACCAATCA+TGG | 0.554719 | 1_4:+64005912 | Msa0177140:CDS |
| TACTTTCATAGTTTCATATG+CGG | 0.555190 | 1_4:+64007018 | Msa0177140:three_prime_UTR |
| TCAAAACCTTCAACCTCTGA+TGG | 0.557623 | 1_4:-64005743 | None:intergenic |
| TAAAGAGTAATAAAGTAGTC+CGG | 0.558650 | 1_4:+64007169 | Msa0177140:three_prime_UTR |
| ATCAGTTTAATGGACTTCAA+AGG | 0.562705 | 1_4:+64005584 | Msa0177140:CDS |
| ATGCATGTGTATACCTTGAA+TGG | 0.563332 | 1_4:-64004541 | None:intergenic |
| GCAGAAGGTAGTGGCAATGG+TGG | 0.564571 | 1_4:+64004798 | Msa0177140:CDS |
| CACAGTGAGGGACGAAGTGA+AGG | 0.565435 | 1_4:+64004977 | Msa0177140:CDS |
| CGCCAGTGGTGATGGAGGAG+TGG | 0.565858 | 1_4:+64004850 | Msa0177140:CDS |
| GCAACAACCTATTTAGTCCA+AGG | 0.567581 | 1_4:+64006391 | Msa0177140:CDS |
| CCCGTCGCCAGTGGTGATGG+AGG | 0.572332 | 1_4:+64004845 | Msa0177140:CDS |
| TGTGCACCATCAGAGGTTGA+AGG | 0.574026 | 1_4:+64005737 | Msa0177140:CDS |
| GGCTTGTATTCTGGTCACTC+AGG | 0.574907 | 1_4:+64005812 | Msa0177140:CDS |
| CGGTGTCATTAACCAACTAA+CGG | 0.576040 | 1_4:+64005016 | Msa0177140:CDS |
| TTTGATACATGTAATGTATG+TGG | 0.576499 | 1_4:+64005761 | Msa0177140:CDS |
| AGGTATCTTTGCCCTAAAGG+GGG | 0.576544 | 1_4:+64006045 | Msa0177140:intron |
| GTTATCTGTTGTATGTGAAG+TGG | 0.578455 | 1_4:-64006759 | None:intergenic |
| GGTTGGAACTCGTGAACTGA+TGG | 0.578796 | 1_4:-64004741 | None:intergenic |
| AGTAAGGTGGTGCACAGTGA+GGG | 0.580947 | 1_4:+64004965 | Msa0177140:CDS |
| GATTTGGTGAACTTAGAAGC+AGG | 0.581877 | 1_4:+64005434 | Msa0177140:CDS |
| ACCAACTAACGGGCTACGTG+TGG | 0.581926 | 1_4:+64005027 | Msa0177140:CDS |
| AAAGGTCACAAGTCTTGCCA+TGG | 0.587608 | 1_4:+64005602 | Msa0177140:CDS |
| ACGACTTTGTGCACCATCAG+AGG | 0.587718 | 1_4:+64005730 | Msa0177140:CDS |
| CCAGTGGATGCAGAAGGTAG+TGG | 0.590987 | 1_4:+64004789 | Msa0177140:CDS |
| TCATCACCAGAGCTTGGTGA+TGG | 0.592564 | 1_4:-64004702 | None:intergenic |
| TAGGTATCTTTGCCCTAAAG+GGG | 0.593324 | 1_4:+64006044 | Msa0177140:intron |
| CCAATATCGGAAAATGGGGT+GGG | 0.596208 | 1_4:+64004900 | Msa0177140:CDS |
| CCAGAGCTTGGTGATGGCAA+TGG | 0.596900 | 1_4:-64004696 | None:intergenic |
| CACACCCAATGATCCGGCGA+CGG | 0.598298 | 1_4:+64004932 | Msa0177140:CDS |
| CAAACATGTGAAGACGAAGA+TGG | 0.598424 | 1_4:-64006894 | None:intergenic |
| TTTCATAGTTTCATATGCGG+TGG | 0.598662 | 1_4:+64007021 | Msa0177140:three_prime_UTR |
| ATATCGGAAAATGGGGTGGG+AGG | 0.604798 | 1_4:+64004903 | Msa0177140:CDS |
| TCGTGATCATCACCAGAGCT+TGG | 0.607923 | 1_4:-64004708 | None:intergenic |
| TCCACTGGAGGAAGTGCTGG+TGG | 0.612234 | 1_4:-64004774 | None:intergenic |
| AAGTACCAATAGTAGCATCA+GGG | 0.612796 | 1_4:-64006946 | None:intergenic |
| TTGGTTAATGACACCGACAA+AGG | 0.623235 | 1_4:-64005009 | None:intergenic |
| GTTACTCCACAGCAGCAGGA+TGG | 0.625433 | 1_4:+64005627 | Msa0177140:CDS |
| GAGTAAGGTGGTGCACAGTG+AGG | 0.634640 | 1_4:+64004964 | Msa0177140:CDS |
| CTACCTTCTGCATCCACTGG+AGG | 0.635103 | 1_4:-64004786 | None:intergenic |
| CTGCTGTGGAGTAACCTCCA+TGG | 0.636623 | 1_4:-64005619 | None:intergenic |
| CTTCCTCCAGTGGATGCAGA+AGG | 0.638589 | 1_4:+64004783 | Msa0177140:CDS |
| CAGAAGGTAGTGGCAATGGT+GGG | 0.642384 | 1_4:+64004799 | Msa0177140:CDS |
| CGGATGACGGCGGAGTAAGG+TGG | 0.643445 | 1_4:+64004952 | Msa0177140:CDS |
| GGCTCCAATATCGGAAAATG+GGG | 0.648028 | 1_4:+64004896 | Msa0177140:CDS |
| GATGCAGAAGGTAGTGGCAA+TGG | 0.649248 | 1_4:+64004795 | Msa0177140:CDS |
| GGGTCACGAGGTTGTATCTG+GGG | 0.649370 | 1_4:+64006681 | Msa0177140:CDS |
| GGTCACAAGTCTTGCCATGG+AGG | 0.651029 | 1_4:+64005605 | Msa0177140:CDS |
| TGTTGCAGTTGTAAACAGAA+GGG | 0.658915 | 1_4:+64005541 | Msa0177140:CDS |
| AGTGCTGGTGGCAGAAGAGG+TGG | 0.660010 | 1_4:-64004762 | None:intergenic |
| AGTACCAATAGTAGCATCAG+GGG | 0.663504 | 1_4:-64006945 | None:intergenic |
| CTGGTGGCAGAAGAGGTGGT+TGG | 0.678794 | 1_4:-64004758 | None:intergenic |
| TGGAACTCGTGAACTGATGG+AGG | 0.684922 | 1_4:-64004738 | None:intergenic |
| GATCCGGCGACGGATGACGG+CGG | 0.685048 | 1_4:+64004942 | Msa0177140:CDS |
| TCCCTCCATAGAATAGAACA+AGG | 0.696491 | 1_4:-64005894 | None:intergenic |
| CAATAGGTCTCCCAAAGCTG+CGG | 0.699418 | 1_4:+64004875 | Msa0177140:CDS |
| GTTGTTGCGAATATCGATTG+GGG | 0.707340 | 1_4:-64006376 | None:intergenic |
| ACATGATTAAAAGGGTCACG+AGG | 0.726909 | 1_4:+64006669 | Msa0177140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTAATGTGATTGAT+GGG | - | chr1_4:64005659-64005678 | None:intergenic | 15.0% |
| !!! | TAAATTTTTAATGTGATTGA+TGG | - | chr1_4:64005660-64005679 | None:intergenic | 15.0% |
| !!! | TTTGTTTCCATATATTTTTC+AGG | + | chr1_4:64004666-64004685 | Msa0177140:intron | 20.0% |
| !! | TTAGTATTTCCCTTTATTAT+TGG | - | chr1_4:64005143-64005162 | None:intergenic | 20.0% |
| !!! | ATAGTTGTGTCTAAAATTTA+AGG | - | chr1_4:64005194-64005213 | None:intergenic | 20.0% |
| !! | ATTTATGCTTAGTAGTTAAT+AGG | + | chr1_4:64005212-64005231 | Msa0177140:intron | 20.0% |
| !! | ATGATCATAATATATCTCAT+TGG | - | chr1_4:64005504-64005523 | None:intergenic | 20.0% |
| !! | CAATGAAAAAATCAGTTTAA+TGG | + | chr1_4:64005574-64005593 | Msa0177140:CDS | 20.0% |
| !!! | AATTTTTAATGTGATTGATG+GGG | - | chr1_4:64005658-64005677 | None:intergenic | 20.0% |
| !! | TGATGAAAAAATGAATGATA+AGG | + | chr1_4:64005685-64005704 | Msa0177140:CDS | 20.0% |
| !! | AAAAAAAAATCTTACACCTA+TGG | - | chr1_4:64006145-64006164 | None:intergenic | 20.0% |
| !! | GTTATTGTTAAAATGATAAC+AGG | - | chr1_4:64006215-64006234 | None:intergenic | 20.0% |
| !!! | ATTTTAACAATAACTAGAGT+TGG | + | chr1_4:64006221-64006240 | Msa0177140:intron | 20.0% |
| !!! | TTACAATGTTTTTCTAAATC+TGG | + | chr1_4:64006513-64006532 | Msa0177140:intron | 20.0% |
| !! | AATTTAATAACCCAACTAAA+TGG | - | chr1_4:64006808-64006827 | None:intergenic | 20.0% |
| ! | TTGATGTTGTCCAATAATAA+AGG | + | chr1_4:64005130-64005149 | Msa0177140:intron | 25.0% |
| ! | TGATGTTGTCCAATAATAAA+GGG | + | chr1_4:64005131-64005150 | Msa0177140:intron | 25.0% |
| !! | ATAATATATCTCATTGGCTA+TGG | - | chr1_4:64005498-64005517 | None:intergenic | 25.0% |
| ! | TTTGATACATGTAATGTATG+TGG | + | chr1_4:64005761-64005780 | Msa0177140:CDS | 25.0% |
| ! | CATCACATGAAAAGTTTATT+AGG | - | chr1_4:64005976-64005995 | None:intergenic | 25.0% |
| !! | TCAATCCATTGAATGATTTT+AGG | + | chr1_4:64006025-64006044 | Msa0177140:intron | 25.0% |
| ! | AGATACCTAAAATCATTCAA+TGG | - | chr1_4:64006033-64006052 | None:intergenic | 25.0% |
| !! | TATTTTACCTTGGACTAAAT+AGG | - | chr1_4:64006401-64006420 | None:intergenic | 25.0% |
| ! | TATTTAGTCCAAGGTAAAAT+AGG | + | chr1_4:64006400-64006419 | Msa0177140:intron | 25.0% |
| !! | AAGATATTCCTATTTTACCT+TGG | - | chr1_4:64006411-64006430 | None:intergenic | 25.0% |
| ! | TTTATATTGTTGTCTACAAC+AGG | + | chr1_4:64006439-64006458 | Msa0177140:intron | 25.0% |
| ! | AAAACTCCTATATGAAAATC+TGG | + | chr1_4:64006567-64006586 | Msa0177140:intron | 25.0% |
| ! | TCTAATTTCACCATTTAGTT+GGG | + | chr1_4:64006795-64006814 | Msa0177140:intron | 25.0% |
| !! | AAACAACAAAGTCTCTATTT+TGG | - | chr1_4:64006984-64007003 | None:intergenic | 25.0% |
| ! | TACTTTCATAGTTTCATATG+CGG | + | chr1_4:64007018-64007037 | Msa0177140:three_prime_UTR | 25.0% |
| ! | TAAAGAGTAATAAAGTAGTC+CGG | + | chr1_4:64007169-64007188 | Msa0177140:three_prime_UTR | 25.0% |
| !!! | TAGACCTTGATATATTTTTG+AGG | + | chr1_4:64007204-64007223 | Msa0177140:three_prime_UTR | 25.0% |
| !!! | AGACCTTGATATATTTTTGA+GGG | + | chr1_4:64007205-64007224 | Msa0177140:three_prime_UTR | 25.0% |
| ! | CATATTGTTGTTGATGTCAA+CGG | - | chr1_4:64004411-64004430 | None:intergenic | 30.0% |
| TGGTCAAAAGAGAACAAAAT+GGG | - | chr1_4:64004455-64004474 | None:intergenic | 30.0% | |
| TTGGTCAAAAGAGAACAAAA+TGG | - | chr1_4:64004456-64004475 | None:intergenic | 30.0% | |
| CTGGAAACCTGAAAAATATA+TGG | - | chr1_4:64004676-64004695 | None:intergenic | 30.0% | |
| TGGATGCTAATGACATAAAA+AGG | - | chr1_4:64005365-64005384 | None:intergenic | 30.0% | |
| !! | ATCAGTTTAATGGACTTCAA+AGG | + | chr1_4:64005584-64005603 | Msa0177140:CDS | 30.0% |
| AATGAAACCTGCAATGAAAT+AGG | + | chr1_4:64005791-64005810 | Msa0177140:CDS | 30.0% | |
| AATGAAATAGGCTTGTATTC+TGG | + | chr1_4:64005803-64005822 | Msa0177140:CDS | 30.0% | |
| CATGAAAAGTTTATTAGGCA+AGG | - | chr1_4:64005971-64005990 | None:intergenic | 30.0% | |
| TTTCATGTGATGCATAAAGT+AGG | + | chr1_4:64005984-64006003 | Msa0177140:intron | 30.0% | |
| !! | CAATGGATTGATATTAGTTG+AGG | - | chr1_4:64006016-64006035 | None:intergenic | 30.0% |
| TGCAATTAGAAACATGCATT+AGG | - | chr1_4:64006171-64006190 | None:intergenic | 30.0% | |
| AACATTGACGAATACTAGTT+TGG | + | chr1_4:64006338-64006357 | Msa0177140:CDS | 30.0% | |
| ! | TTCCATCCAGATTTTCATAT+AGG | - | chr1_4:64006576-64006595 | None:intergenic | 30.0% |
| TTTAATCATGTCTAGTCCTT+GGG | - | chr1_4:64006660-64006679 | None:intergenic | 30.0% | |
| ! | TTTTAATCATGTCTAGTCCT+TGG | - | chr1_4:64006661-64006680 | None:intergenic | 30.0% |
| AAGGACTAGACATGATTAAA+AGG | + | chr1_4:64006660-64006679 | Msa0177140:CDS | 30.0% | |
| AGGACTAGACATGATTAAAA+GGG | + | chr1_4:64006661-64006680 | Msa0177140:CDS | 30.0% | |
| CTCTAATTTCACCATTTAGT+TGG | + | chr1_4:64006794-64006813 | Msa0177140:intron | 30.0% | |
| TGTCATTAGCTCATCATATT+AGG | - | chr1_4:64007100-64007119 | None:intergenic | 30.0% | |
| GTGCTTGATTTCTTTATAGT+AGG | + | chr1_4:64007138-64007157 | Msa0177140:three_prime_UTR | 30.0% | |
| AGTCCCTCAAAAATATATCA+AGG | - | chr1_4:64007211-64007230 | None:intergenic | 30.0% | |
| ! | AGAAGAGAAACAGTGTTGTT+GGG | - | chr1_4:64004488-64004507 | None:intergenic | 35.0% |
| AAGAAGAGAAACAGTGTTGT+TGG | - | chr1_4:64004489-64004508 | None:intergenic | 35.0% | |
| ATGCATGTGTATACCTTGAA+TGG | - | chr1_4:64004544-64004563 | None:intergenic | 35.0% | |
| ! | TTGAGCTTTATGTGTGTTGT+GGG | - | chr1_4:64004614-64004633 | None:intergenic | 35.0% |
| ! | TGTCTAGAGTCAATCAAGAA+TGG | + | chr1_4:64005404-64005423 | Msa0177140:CDS | 35.0% |
| TGTTGCAGTTGTAAACAGAA+GGG | + | chr1_4:64005541-64005560 | Msa0177140:CDS | 35.0% | |
| ATACAAGCCTATTTCATTGC+AGG | - | chr1_4:64005801-64005820 | None:intergenic | 35.0% | |
| ! | TACTGCCTTGTTCTATTCTA+TGG | + | chr1_4:64005889-64005908 | Msa0177140:CDS | 35.0% |
| ATGGTCAACAAAGTCTCTTA+GGG | + | chr1_4:64005931-64005950 | Msa0177140:CDS | 35.0% | |
| TTTAGGTATCTTTGCCCTAA+AGG | + | chr1_4:64006042-64006061 | Msa0177140:intron | 35.0% | |
| TTAGGTATCTTTGCCCTAAA+GGG | + | chr1_4:64006043-64006062 | Msa0177140:intron | 35.0% | |
| AAAACTTACGAACAATCTGC+AGG | - | chr1_4:64006093-64006112 | None:intergenic | 35.0% | |
| AACAGTTCCAAACCTGATTA+AGG | - | chr1_4:64006256-64006275 | None:intergenic | 35.0% | |
| TGTTCCTGCAAATGTGATAA+TGG | + | chr1_4:64006272-64006291 | Msa0177140:CDS | 35.0% | |
| ACATGCATTCTCTTCTTGTT+GGG | - | chr1_4:64006312-64006331 | None:intergenic | 35.0% | |
| ! | ATTGACGAATACTAGTTTGG+TGG | + | chr1_4:64006341-64006360 | Msa0177140:CDS | 35.0% |
| CTCCTATATGAAAATCTGGA+TGG | + | chr1_4:64006571-64006590 | Msa0177140:intron | 35.0% | |
| GTTATCTGTTGTATGTGAAG+TGG | - | chr1_4:64006762-64006781 | None:intergenic | 35.0% | |
| TGGTGAAATTAGAGTTAACC+TGG | - | chr1_4:64006788-64006807 | None:intergenic | 35.0% | |
| AAGTACCAATAGTAGCATCA+GGG | - | chr1_4:64006949-64006968 | None:intergenic | 35.0% | |
| TAAGTACCAATAGTAGCATC+AGG | - | chr1_4:64006950-64006969 | None:intergenic | 35.0% | |
| !!! | CTTTGTTGTTTTCTACTCAG+TGG | + | chr1_4:64006993-64007012 | Msa0177140:three_prime_UTR | 35.0% |
| TTTCATAGTTTCATATGCGG+TGG | + | chr1_4:64007021-64007040 | Msa0177140:three_prime_UTR | 35.0% | |
| ! | AATAAAGTAGTCCGGTTTGT+TGG | + | chr1_4:64007177-64007196 | Msa0177140:three_prime_UTR | 35.0% |
| ! | GTTGAGCTTTATGTGTGTTG+TGG | - | chr1_4:64004615-64004634 | None:intergenic | 40.0% |
| TTGGTTAATGACACCGACAA+AGG | - | chr1_4:64005012-64005031 | None:intergenic | 40.0% | |
| !! | CGGTGTCATTAACCAACTAA+CGG | + | chr1_4:64005016-64005035 | Msa0177140:CDS | 40.0% |
| !! | GGTGTCATTAACCAACTAAC+GGG | + | chr1_4:64005017-64005036 | Msa0177140:CDS | 40.0% |
| ! | AAGGTGCTTAAAGAATACCC+TGG | - | chr1_4:64005175-64005194 | None:intergenic | 40.0% |
| CTGCTAGAAGAAACGTGAAA+AGG | - | chr1_4:64005274-64005293 | None:intergenic | 40.0% | |
| ! | AATCCTGGGCTTTCTCTTTT+TGG | - | chr1_4:64005385-64005404 | None:intergenic | 40.0% |
| ! | GATTGACTCTAGACAATCCT+GGG | - | chr1_4:64005399-64005418 | None:intergenic | 40.0% |
| ! | TGATTGACTCTAGACAATCC+TGG | - | chr1_4:64005400-64005419 | None:intergenic | 40.0% |
| CAAGAATGGAGAAGCAGATT+TGG | + | chr1_4:64005418-64005437 | Msa0177140:CDS | 40.0% | |
| !! | GATTTGGTGAACTTAGAAGC+AGG | + | chr1_4:64005434-64005453 | Msa0177140:CDS | 40.0% |
| ! | TGCAACAGCTTCATAGGTTT+TGG | - | chr1_4:64005528-64005547 | None:intergenic | 40.0% |
| TACAACTGCAACAGCTTCAT+AGG | - | chr1_4:64005534-64005553 | None:intergenic | 40.0% | |
| CTGTTGCAGTTGTAAACAGA+AGG | + | chr1_4:64005540-64005559 | Msa0177140:CDS | 40.0% | |
| TCAAAACCTTCAACCTCTGA+TGG | - | chr1_4:64005746-64005765 | None:intergenic | 40.0% | |
| !! | AGCTTTTAGGTGTCTAGTAG+AGG | + | chr1_4:64005835-64005854 | Msa0177140:CDS | 40.0% |
| !! | GGAGACATTGCTTTTGTCAA+GGG | + | chr1_4:64005863-64005882 | Msa0177140:CDS | 40.0% |
| ! | TGCCTTGTTCTATTCTATGG+AGG | + | chr1_4:64005892-64005911 | Msa0177140:CDS | 40.0% |
| ! | GCCTTGTTCTATTCTATGGA+GGG | + | chr1_4:64005893-64005912 | Msa0177140:CDS | 40.0% |
| TCCCTCCATAGAATAGAACA+AGG | - | chr1_4:64005897-64005916 | None:intergenic | 40.0% | |
| ! | GTTGACCATGATTGGTTATG+AGG | - | chr1_4:64005920-64005939 | None:intergenic | 40.0% |
| GAGACTTTGTTGACCATGAT+TGG | - | chr1_4:64005928-64005947 | None:intergenic | 40.0% | |
| CATGGTCAACAAAGTCTCTT+AGG | + | chr1_4:64005930-64005949 | Msa0177140:CDS | 40.0% | |
| TAGGTATCTTTGCCCTAAAG+GGG | + | chr1_4:64006044-64006063 | Msa0177140:intron | 40.0% | |
| CACATGTTTGTGTTTGCCAT+AGG | + | chr1_4:64006126-64006145 | Msa0177140:intron | 40.0% | |
| TGGTTGCTTCATCCTTAATC+AGG | + | chr1_4:64006241-64006260 | Msa0177140:intron | 40.0% | |
| GCTTCATCCTTAATCAGGTT+TGG | + | chr1_4:64006246-64006265 | Msa0177140:intron | 40.0% | |
| ! | TGTGCCATTATCACATTTGC+AGG | - | chr1_4:64006279-64006298 | None:intergenic | 40.0% |
| GACATGCATTCTCTTCTTGT+TGG | - | chr1_4:64006313-64006332 | None:intergenic | 40.0% | |
| ! | GTTGTTGCGAATATCGATTG+GGG | - | chr1_4:64006379-64006398 | None:intergenic | 40.0% |
| ! | GGTTGTTGCGAATATCGATT+GGG | - | chr1_4:64006380-64006399 | None:intergenic | 40.0% |
| AGGTTGTTGCGAATATCGAT+TGG | - | chr1_4:64006381-64006400 | None:intergenic | 40.0% | |
| GCAACAACCTATTTAGTCCA+AGG | + | chr1_4:64006391-64006410 | Msa0177140:CDS | 40.0% | |
| CAAGTCACTCTTCAAACTCA+TGG | - | chr1_4:64006490-64006509 | None:intergenic | 40.0% | |
| CATGAGTTTGAAGAGTGACT+TGG | + | chr1_4:64006488-64006507 | Msa0177140:intron | 40.0% | |
| ACATGATTAAAAGGGTCACG+AGG | + | chr1_4:64006669-64006688 | Msa0177140:CDS | 40.0% | |
| TGTTGTATGTGAAGTGGCTT+TGG | - | chr1_4:64006756-64006775 | None:intergenic | 40.0% | |
| CATACAACAGATAACGTTCC+AGG | + | chr1_4:64006767-64006786 | Msa0177140:CDS | 40.0% | |
| CGAAGATGGTTCATCTGTTA+TGG | - | chr1_4:64006883-64006902 | None:intergenic | 40.0% | |
| CAAACATGTGAAGACGAAGA+TGG | - | chr1_4:64006897-64006916 | None:intergenic | 40.0% | |
| AGTACCAATAGTAGCATCAG+GGG | - | chr1_4:64006948-64006967 | None:intergenic | 40.0% | |
| TTGTCTGATGTGTGCAGAAT+TGG | + | chr1_4:64007068-64007087 | Msa0177140:three_prime_UTR | 40.0% | |
| ! | AGGTCTAGAATCCAACAAAC+CGG | - | chr1_4:64007191-64007210 | None:intergenic | 40.0% |
| TGTTGTTGGGATCTGCATCT+TGG | - | chr1_4:64004475-64004494 | None:intergenic | 45.0% | |
| GAGTGATGACAGAAGAAGAG+AGG | - | chr1_4:64004520-64004539 | None:intergenic | 45.0% | |
| CTGTCATCACTCTCCATTCA+AGG | + | chr1_4:64004528-64004547 | Msa0177140:CDS | 45.0% | |
| CGGCTCCAATATCGGAAAAT+GGG | + | chr1_4:64004895-64004914 | Msa0177140:CDS | 45.0% | |
| GGCTCCAATATCGGAAAATG+GGG | + | chr1_4:64004896-64004915 | Msa0177140:CDS | 45.0% | |
| TCCAATATCGGAAAATGGGG+TGG | + | chr1_4:64004899-64004918 | Msa0177140:CDS | 45.0% | |
| CCAATATCGGAAAATGGGGT+GGG | + | chr1_4:64004900-64004919 | Msa0177140:CDS | 45.0% | |
| !! | AAGGAGTGTCAGTCCTTTGT+CGG | + | chr1_4:64004996-64005015 | Msa0177140:CDS | 45.0% |
| AAATACTAACGAGTGCCTCC+AGG | + | chr1_4:64005154-64005173 | Msa0177140:intron | 45.0% | |
| AATACTAACGAGTGCCTCCA+GGG | + | chr1_4:64005155-64005174 | Msa0177140:intron | 45.0% | |
| GTGCTTAAAGAATACCCTGG+AGG | - | chr1_4:64005172-64005191 | None:intergenic | 45.0% | |
| CATCCAAAAAGAGAAAGCCC+AGG | + | chr1_4:64005379-64005398 | Msa0177140:CDS | 45.0% | |
| AAAGGTCACAAGTCTTGCCA+TGG | + | chr1_4:64005602-64005621 | Msa0177140:CDS | 45.0% | |
| TAGGTGTCTAGTAGAGGAGT+TGG | + | chr1_4:64005841-64005860 | Msa0177140:CDS | 45.0% | |
| AGGTGTCTAGTAGAGGAGTT+GGG | + | chr1_4:64005842-64005861 | Msa0177140:CDS | 45.0% | |
| !! | GGGAGACATTGCTTTTGTCA+AGG | + | chr1_4:64005862-64005881 | Msa0177140:CDS | 45.0% |
| AGGGACCTCATAACCAATCA+TGG | + | chr1_4:64005912-64005931 | Msa0177140:CDS | 45.0% | |
| AGGTATCTTTGCCCTAAAGG+GGG | + | chr1_4:64006045-64006064 | Msa0177140:intron | 45.0% | |
| TTTCTCTGCAACCCCCTTTA+GGG | - | chr1_4:64006059-64006078 | None:intergenic | 45.0% | |
| ATTTCTCTGCAACCCCCTTT+AGG | - | chr1_4:64006060-64006079 | None:intergenic | 45.0% | |
| ! | TCATCACCAGAGCTTGGTGA+TGG | - | chr1_4:64004705-64004724 | None:intergenic | 50.0% |
| TCGTGATCATCACCAGAGCT+TGG | - | chr1_4:64004711-64004730 | None:intergenic | 50.0% | |
| TGGAACTCGTGAACTGATGG+AGG | - | chr1_4:64004741-64004760 | None:intergenic | 50.0% | |
| GGTTGGAACTCGTGAACTGA+TGG | - | chr1_4:64004744-64004763 | None:intergenic | 50.0% | |
| ! | GATGCAGAAGGTAGTGGCAA+TGG | + | chr1_4:64004795-64004814 | Msa0177140:CDS | 50.0% |
| ! | CAGAAGGTAGTGGCAATGGT+GGG | + | chr1_4:64004799-64004818 | Msa0177140:CDS | 50.0% |
| !! | GGCAATGGTGGGTCTATTTC+CGG | + | chr1_4:64004810-64004829 | Msa0177140:CDS | 50.0% |
| TGATGGAGGAGTGGCACAAT+AGG | + | chr1_4:64004859-64004878 | Msa0177140:CDS | 50.0% | |
| CAATAGGTCTCCCAAAGCTG+CGG | + | chr1_4:64004875-64004894 | Msa0177140:CDS | 50.0% | |
| GATATTGGAGCCGCAGCTTT+GGG | - | chr1_4:64004888-64004907 | None:intergenic | 50.0% | |
| CAAAGCTGCGGCTCCAATAT+CGG | + | chr1_4:64004887-64004906 | Msa0177140:CDS | 50.0% | |
| GCGGCTCCAATATCGGAAAA+TGG | + | chr1_4:64004894-64004913 | Msa0177140:CDS | 50.0% | |
| ! | CCCACCCCATTTTCCGATAT+TGG | - | chr1_4:64004903-64004922 | None:intergenic | 50.0% |
| ATATCGGAAAATGGGGTGGG+AGG | + | chr1_4:64004903-64004922 | Msa0177140:CDS | 50.0% | |
| AGTAAGGTGGTGCACAGTGA+GGG | + | chr1_4:64004965-64004984 | Msa0177140:CDS | 50.0% | |
| !! | TAACGGGCTACGTGTGGAAA+TGG | + | chr1_4:64005033-64005052 | Msa0177140:CDS | 50.0% |
| ACGACTTTGTGCACCATCAG+AGG | + | chr1_4:64005730-64005749 | Msa0177140:CDS | 50.0% | |
| TGTGCACCATCAGAGGTTGA+AGG | + | chr1_4:64005737-64005756 | Msa0177140:CDS | 50.0% | |
| GGCTTGTATTCTGGTCACTC+AGG | + | chr1_4:64005812-64005831 | Msa0177140:CDS | 50.0% | |
| ! | CTGGTCACTCAGGAGCTTTT+AGG | + | chr1_4:64005822-64005841 | Msa0177140:CDS | 50.0% |
| GGGGGTTGCAGAGAAATCAA+TGG | + | chr1_4:64006063-64006082 | Msa0177140:CDS | 50.0% | |
| CACCTTTGTTGCAGTACCCA+AGG | + | chr1_4:64006641-64006660 | Msa0177140:intron | 50.0% | |
| ! | GTCCTTGGGTACTGCAACAA+AGG | - | chr1_4:64006646-64006665 | None:intergenic | 50.0% |
| AAGGGTCACGAGGTTGTATC+TGG | + | chr1_4:64006679-64006698 | Msa0177140:CDS | 50.0% | |
| AGGGTCACGAGGTTGTATCT+GGG | + | chr1_4:64006680-64006699 | Msa0177140:CDS | 50.0% | |
| !! | GTGAAGTGGCTTTGGCTTCT+GGG | - | chr1_4:64006748-64006767 | None:intergenic | 50.0% |
| !! | TGTGAAGTGGCTTTGGCTTC+TGG | - | chr1_4:64006749-64006768 | None:intergenic | 50.0% |
| CTCACCCCTGATGCTACTAT+TGG | + | chr1_4:64006941-64006960 | Msa0177140:CDS | 50.0% | |
| !! | AGCTTGGTGATGGCAATGGC+TGG | - | chr1_4:64004695-64004714 | None:intergenic | 55.0% |
| !! | CCAGAGCTTGGTGATGGCAA+TGG | - | chr1_4:64004699-64004718 | None:intergenic | 55.0% |
| CCATTGCCATCACCAAGCTC+TGG | + | chr1_4:64004696-64004715 | Msa0177140:CDS | 55.0% | |
| CTTCCTCCAGTGGATGCAGA+AGG | + | chr1_4:64004783-64004802 | Msa0177140:CDS | 55.0% | |
| CTACCTTCTGCATCCACTGG+AGG | - | chr1_4:64004789-64004808 | None:intergenic | 55.0% | |
| CCACTACCTTCTGCATCCAC+TGG | - | chr1_4:64004792-64004811 | None:intergenic | 55.0% | |
| CCAGTGGATGCAGAAGGTAG+TGG | + | chr1_4:64004789-64004808 | Msa0177140:CDS | 55.0% | |
| ! | GCAGAAGGTAGTGGCAATGG+TGG | + | chr1_4:64004798-64004817 | Msa0177140:CDS | 55.0% |
| CGATATTGGAGCCGCAGCTT+TGG | - | chr1_4:64004889-64004908 | None:intergenic | 55.0% | |
| CCATGGCACACCCAATGATC+CGG | + | chr1_4:64004926-64004945 | Msa0177140:CDS | 55.0% | |
| TCATCCGTCGCCGGATCATT+GGG | - | chr1_4:64004939-64004958 | None:intergenic | 55.0% | |
| AATGATCCGGCGACGGATGA+CGG | + | chr1_4:64004939-64004958 | Msa0177140:CDS | 55.0% | |
| GAGTAAGGTGGTGCACAGTG+AGG | + | chr1_4:64004964-64004983 | Msa0177140:CDS | 55.0% | |
| CACAGTGAGGGACGAAGTGA+AGG | + | chr1_4:64004977-64004996 | Msa0177140:CDS | 55.0% | |
| !! | ACCAACTAACGGGCTACGTG+TGG | + | chr1_4:64005027-64005046 | Msa0177140:CDS | 55.0% |
| TCCACACGTAGCCCGTTAGT+TGG | - | chr1_4:64005031-64005050 | None:intergenic | 55.0% | |
| GGTCACAAGTCTTGCCATGG+AGG | + | chr1_4:64005605-64005624 | Msa0177140:CDS | 55.0% | |
| CTGCTGTGGAGTAACCTCCA+TGG | - | chr1_4:64005622-64005641 | None:intergenic | 55.0% | |
| GTTACTCCACAGCAGCAGGA+TGG | + | chr1_4:64005627-64005646 | Msa0177140:CDS | 55.0% | |
| GTAGTTCCATCCTGCTGCTG+TGG | - | chr1_4:64005636-64005655 | None:intergenic | 55.0% | |
| GGGTCACGAGGTTGTATCTG+GGG | + | chr1_4:64006681-64006700 | Msa0177140:CDS | 55.0% | |
| CTGGTGGCAGAAGAGGTGGT+TGG | - | chr1_4:64004761-64004780 | None:intergenic | 60.0% | |
| !! | AGTGCTGGTGGCAGAAGAGG+TGG | - | chr1_4:64004765-64004784 | None:intergenic | 60.0% |
| !! | GGAAGTGCTGGTGGCAGAAG+AGG | - | chr1_4:64004768-64004787 | None:intergenic | 60.0% |
| !! | TCCACTGGAGGAAGTGCTGG+TGG | - | chr1_4:64004777-64004796 | None:intergenic | 60.0% |
| ! | GCATCCACTGGAGGAAGTGC+TGG | - | chr1_4:64004780-64004799 | None:intergenic | 60.0% |
| TCCTCCATCACCACTGGCGA+CGG | - | chr1_4:64004849-64004868 | None:intergenic | 60.0% | |
| TGCCACTCCTCCATCACCAC+TGG | - | chr1_4:64004855-64004874 | None:intergenic | 60.0% | |
| GAAAATGGGGTGGGAGGCCA+TGG | + | chr1_4:64004909-64004928 | Msa0177140:CDS | 60.0% | |
| CCGGATCATTGGGTGTGCCA+TGG | - | chr1_4:64004929-64004948 | None:intergenic | 60.0% | |
| CACACCCAATGATCCGGCGA+CGG | + | chr1_4:64004932-64004951 | Msa0177140:CDS | 60.0% | |
| GTCATCCGTCGCCGGATCAT+TGG | - | chr1_4:64004940-64004959 | None:intergenic | 60.0% | |
| GGAGGTTACTCCACAGCAGC+AGG | + | chr1_4:64005623-64005642 | Msa0177140:CDS | 60.0% | |
| GCCACCAGCACTTCCTCCAG+TGG | + | chr1_4:64004773-64004792 | Msa0177140:CDS | 65.0% | |
| CGACGGGGGATCAGACTCAC+CGG | - | chr1_4:64004832-64004851 | None:intergenic | 65.0% | |
| TCCATCACCACTGGCGACGG+GGG | - | chr1_4:64004846-64004865 | None:intergenic | 65.0% | |
| CTCCATCACCACTGGCGACG+GGG | - | chr1_4:64004847-64004866 | None:intergenic | 65.0% | |
| CCTCCATCACCACTGGCGAC+GGG | - | chr1_4:64004848-64004867 | None:intergenic | 65.0% | |
| !! | CGCCAGTGGTGATGGAGGAG+TGG | + | chr1_4:64004850-64004869 | Msa0177140:CDS | 65.0% |
| ! | CGACGGATGACGGCGGAGTA+AGG | + | chr1_4:64004949-64004968 | Msa0177140:CDS | 65.0% |
| ! | CGGATGACGGCGGAGTAAGG+TGG | + | chr1_4:64004952-64004971 | Msa0177140:CDS | 65.0% |
| GTCTGATCCCCCGTCGCCAG+TGG | + | chr1_4:64004836-64004855 | Msa0177140:CDS | 70.0% | |
| TCCCCCGTCGCCAGTGGTGA+TGG | + | chr1_4:64004842-64004861 | Msa0177140:CDS | 70.0% | |
| !! | CCCGTCGCCAGTGGTGATGG+AGG | + | chr1_4:64004845-64004864 | Msa0177140:CDS | 70.0% |
| ! | GATCCGGCGACGGATGACGG+CGG | + | chr1_4:64004942-64004961 | Msa0177140:CDS | 70.0% |
| ACTCCGCCGTCATCCGTCGC+CGG | - | chr1_4:64004948-64004967 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 64004394 | 64007259 | 64004394 | ID=Msa0177140;Name=Msa0177140 |
| chr1_4 | mRNA | 64004394 | 64007259 | 64004394 | ID=Msa0177140-mRNA-1;Parent=Msa0177140;Name=Msa0177140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=83|1|1|1|1|1|7|270|487 |
| chr1_4 | exon | 64004394 | 64004549 | 64004394 | ID=Msa0177140-mRNA-1:exon:20773;Parent=Msa0177140-mRNA-1 |
| chr1_4 | exon | 64004688 | 64005054 | 64004688 | ID=Msa0177140-mRNA-1:exon:20774;Parent=Msa0177140-mRNA-1 |
| chr1_4 | exon | 64005379 | 64005960 | 64005379 | ID=Msa0177140-mRNA-1:exon:20775;Parent=Msa0177140-mRNA-1 |
| chr1_4 | exon | 64006047 | 64006103 | 64006047 | ID=Msa0177140-mRNA-1:exon:20776;Parent=Msa0177140-mRNA-1 |
| chr1_4 | exon | 64006263 | 64006412 | 64006263 | ID=Msa0177140-mRNA-1:exon:20777;Parent=Msa0177140-mRNA-1 |
| chr1_4 | exon | 64006655 | 64006788 | 64006655 | ID=Msa0177140-mRNA-1:exon:20778;Parent=Msa0177140-mRNA-1 |
| chr1_4 | exon | 64006889 | 64007259 | 64006889 | ID=Msa0177140-mRNA-1:exon:20779;Parent=Msa0177140-mRNA-1 |
| chr1_4 | five_prime_UTR | 64004394 | 64004476 | 64004394 | ID=Msa0177140-mRNA-1:five_prime_utr;Parent=Msa0177140-mRNA-1 |
| chr1_4 | CDS | 64004477 | 64004549 | 64004477 | ID=Msa0177140-mRNA-1:cds;Parent=Msa0177140-mRNA-1 |
| chr1_4 | CDS | 64004688 | 64005054 | 64004688 | ID=Msa0177140-mRNA-1:cds;Parent=Msa0177140-mRNA-1 |
| chr1_4 | CDS | 64005379 | 64005960 | 64005379 | ID=Msa0177140-mRNA-1:cds;Parent=Msa0177140-mRNA-1 |
| chr1_4 | CDS | 64006047 | 64006103 | 64006047 | ID=Msa0177140-mRNA-1:cds;Parent=Msa0177140-mRNA-1 |
| chr1_4 | CDS | 64006263 | 64006412 | 64006263 | ID=Msa0177140-mRNA-1:cds;Parent=Msa0177140-mRNA-1 |
| chr1_4 | CDS | 64006655 | 64006788 | 64006655 | ID=Msa0177140-mRNA-1:cds;Parent=Msa0177140-mRNA-1 |
| chr1_4 | CDS | 64006889 | 64006989 | 64006889 | ID=Msa0177140-mRNA-1:cds;Parent=Msa0177140-mRNA-1 |
| chr1_4 | three_prime_UTR | 64006990 | 64007259 | 64006990 | ID=Msa0177140-mRNA-1:three_prime_utr;Parent=Msa0177140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
