AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037490 MtrunA17_Chr1g0195811 92.991 214 15 0 1 214 1 214 4.09e-150 415
Msa0037490 MtrunA17_Chr1g0195821 87.850 214 26 0 1 214 1 214 4.04e-141 392
Msa0037490 MtrunA17_Chr3g0109891 45.411 207 112 1 3 208 2 208 1.32e-59 186
Msa0037490 MtrunA17_Chr3g0095781 43.333 210 117 2 3 211 2 210 6.68e-58 182
Msa0037490 MtrunA17_Chr1g0195831 39.904 208 124 1 4 210 3 210 9.38e-57 179
Msa0037490 MtrunA17_Chr1g0157211 42.727 220 119 4 1 213 1 220 3.63e-56 177
Msa0037490 MtrunA17_Chr5g0442751 43.810 210 113 4 3 209 2 209 9.69e-56 176
Msa0037490 MtrunA17_Chr5g0442741 41.706 211 120 3 3 211 2 211 1.29e-54 173
Msa0037490 MtrunA17_Chr3g0095821 45.122 164 89 1 49 211 1 164 2.92e-47 153
Msa0037490 MtrunA17_Chr1g0198101 86.765 68 9 0 147 214 1 68 4.37e-39 129
Msa0037490 MtrunA17_Chr3g0125261 23.431 239 151 5 4 210 1 239 8.91e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037490 AT1G02920.1 62.679 209 78 0 1 209 1 209 2.37e-88 259
Msa0037490 AT1G02930.2 61.244 209 80 1 1 209 1 208 3.13e-87 256
Msa0037490 AT1G02930.1 61.244 209 80 1 1 209 1 208 3.13e-87 256
Msa0037490 AT2G47730.2 58.537 205 84 1 6 209 54 258 8.16e-87 257
Msa0037490 AT2G47730.1 58.537 205 84 1 6 209 54 258 8.16e-87 257
Msa0037490 AT4G02520.1 58.768 211 84 1 1 208 1 211 4.23e-84 248
Msa0037490 AT2G02930.1 58.491 212 85 1 1 209 1 212 1.84e-82 244
Msa0037490 AT1G02950.2 54.854 206 92 1 1 205 24 229 4.24e-78 234
Msa0037490 AT1G02950.5 55.446 202 89 1 5 205 38 239 9.14e-78 234
Msa0037490 AT1G02950.3 55.446 202 89 1 5 205 26 227 1.04e-77 233
Msa0037490 AT1G02950.1 55.446 202 89 1 5 205 26 227 1.04e-77 233
Msa0037490 AT1G02940.4 46.602 206 109 1 5 209 40 245 9.00e-66 204
Msa0037490 AT1G02940.1 46.602 206 109 1 5 209 40 245 9.00e-66 204
Msa0037490 AT1G02940.3 46.602 206 109 1 5 209 53 258 1.56e-65 203
Msa0037490 AT1G02940.2 46.602 206 109 1 5 209 65 270 1.66e-65 204
Msa0037490 AT3G62760.1 48.058 206 106 1 4 208 3 208 2.01e-63 196
Msa0037490 AT1G49860.1 47.692 195 98 2 21 211 22 216 4.81e-58 184
Msa0037490 AT3G03190.1 44.286 210 116 1 3 211 2 211 1.16e-56 179
Msa0037490 AT5G17220.1 39.048 210 127 1 3 211 2 211 9.94e-52 166
Msa0037490 AT2G30860.1 40.191 209 123 2 3 210 2 209 8.29e-50 161
Msa0037490 AT2G30870.1 38.424 203 124 1 9 210 7 209 1.26e-46 153
Msa0037490 AT1G02950.4 50.704 142 69 1 65 205 60 201 4.86e-44 147
Msa0037490 AT2G30860.2 37.255 153 95 1 3 155 2 153 7.25e-31 111
Msa0037490 AT5G41210.1 25.980 204 145 2 1 198 1 204 1.24e-11 62.4
Msa0037490 AT5G41240.1 29.208 202 131 5 4 196 3 201 3.09e-11 62.4

Find 66 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCACTTCGATTATTTA+TGG 0.098554 1_1:+66506787 None:intergenic
CCCCATTATTGCTATCTTCT+TGG 0.169803 1_1:+66507239 None:intergenic
TTGGGGATAAAGAGTTTATT+TGG 0.186179 1_1:-66507156 Msa0037490:CDS
TTTCAAGTGTACTGTAAAAT+AGG 0.210728 1_1:-66506583 Msa0037490:three_prime_UTR
ATCAAGAATGCTATCCAATT+TGG 0.237155 1_1:+66507095 None:intergenic
AGAGTCACCTCCCAAGTATT+TGG 0.266829 1_1:+66507047 None:intergenic
CTCCAAGAAGATAGCAATAA+TGG 0.269830 1_1:-66507241 Msa0037490:CDS
TCAAAACTTGTTCGGGAATT+GGG 0.278093 1_1:-66507174 Msa0037490:CDS
ATCAAAACTTGTTCGGGAAT+TGG 0.285433 1_1:-66507175 Msa0037490:CDS
GATGGAGATTTAAAGCTCTT+TGG 0.296201 1_1:-66507547 Msa0037490:intron
TGAAGAGAATGAAGCCAAAT+TGG 0.299438 1_1:-66507109 Msa0037490:CDS
TCGTGATTCAAACAATTTCT+TGG 0.300130 1_1:+66506966 None:intergenic
CGAATCAAAGACATTGGTTA+AGG 0.340841 1_1:-66506705 Msa0037490:three_prime_UTR
GGAGTCATTGCTTGTTAACT+TGG 0.352335 1_1:+66507260 None:intergenic
GAGGAATGGTGAACACAAAA+AGG 0.363061 1_1:-66508097 Msa0037490:CDS
AACAATGAGTATGCTGATAA+GGG 0.368137 1_1:-66507285 Msa0037490:CDS
TTCTTTATGTTGCAGCCATT+TGG 0.379956 1_1:-66507589 Msa0037490:intron
TAACAATGAGTATGCTGATA+AGG 0.387390 1_1:-66507286 Msa0037490:CDS
AGTAGCATCAAAACTTGTTC+GGG 0.393847 1_1:-66507181 Msa0037490:CDS
AAGTAGCATCAAAACTTGTT+CGG 0.398448 1_1:-66507182 Msa0037490:CDS
GAGTTTATTTGGAATTCCTT+TGG 0.399412 1_1:-66507145 Msa0037490:CDS
TCCAAGAAGATAGCAATAAT+GGG 0.404293 1_1:-66507240 Msa0037490:CDS
ATGGCAACAATAAAAGTTCA+TGG 0.419997 1_1:-66508204 Msa0037490:CDS
AAAATGTAATATTGATTTGT+TGG 0.428291 1_1:-66506660 Msa0037490:three_prime_UTR
AGGTGACTCTTTCACCTTGG+TGG 0.445525 1_1:-66507034 Msa0037490:CDS
AAATCTCCATCTTCAAAAGC+TGG 0.446504 1_1:+66507559 None:intergenic
ACTGTCTTAATTAGGTATCA+TGG 0.449391 1_1:+66506882 None:intergenic
GAATCAAAGACATTGGTTAA+GGG 0.449959 1_1:-66506704 Msa0037490:three_prime_UTR
CGCATGGTGGCCGTTGAGAA+GGG 0.451123 1_1:+66508177 None:intergenic
GCTTACATTGAGTGATATGA+AGG 0.454820 1_1:+66508071 None:intergenic
CACGATCTCATGTTAGTGCT+TGG 0.456189 1_1:-66506948 Msa0037490:CDS
CCGCATGGTGGCCGTTGAGA+AGG 0.456361 1_1:+66508176 None:intergenic
AAAATTGAAATGCAGAATCA+AGG 0.457301 1_1:-66507326 Msa0037490:intron
ATTGTCTGAGTCCAAATACT+TGG 0.458455 1_1:-66507058 Msa0037490:CDS
TTAATTGATCTGCTAAATCA+TGG 0.462473 1_1:-66508223 Msa0037490:exon
AAATGTAATATTGATTTGTT+GGG 0.464191 1_1:-66506659 Msa0037490:three_prime_UTR
AAAGCTGGAACTTGACCAAA+TGG 0.480424 1_1:+66507574 None:intergenic
ACGATCTCATGTTAGTGCTT+GGG 0.482947 1_1:-66506947 Msa0037490:CDS
CTTCTCAACGGCCACCATGC+GGG 0.483705 1_1:-66508175 Msa0037490:CDS
TTGGTTAAGGGATTTGAGTC+CGG 0.493988 1_1:-66506692 Msa0037490:three_prime_UTR
ATGCTACTTGATCGAAGTGT+TGG 0.510802 1_1:+66507196 None:intergenic
GTTAACATTAACTTGAGGAA+TGG 0.519535 1_1:-66508111 Msa0037490:CDS
GGGAGGTGACTCTTTCACCT+TGG 0.520363 1_1:-66507037 Msa0037490:CDS
TTCATCAAGTAATGAAAAGT+AGG 0.527654 1_1:+66506997 None:intergenic
CAAAACTTGTTCGGGAATTG+GGG 0.535983 1_1:-66507173 Msa0037490:CDS
GAATGAAGATTCTTCACTGA+AGG 0.551224 1_1:+66506758 None:intergenic
CTTAATTAGGTATCATGGCA+AGG 0.566951 1_1:+66506887 None:intergenic
GGACAAAGTCGATAAATACT+TGG 0.568289 1_1:+66506808 None:intergenic
AAATTGAAATGCAGAATCAA+GGG 0.575285 1_1:-66507325 Msa0037490:intron
GCATGGTGGCCGTTGAGAAG+GGG 0.575640 1_1:+66508178 None:intergenic
GCAAGGACTTTAGACCAAGC+TGG 0.580505 1_1:+66506904 None:intergenic
CCTTCTCAACGGCCACCATG+CGG 0.591400 1_1:-66508176 Msa0037490:CDS
ATAACTCGAATCAAAGACAT+TGG 0.594893 1_1:-66506711 Msa0037490:three_prime_UTR
ATATCACTGCAAGACCAGCT+TGG 0.601324 1_1:-66506918 Msa0037490:CDS
TTGTCTGAGTCCAAATACTT+GGG 0.601763 1_1:-66507057 Msa0037490:CDS
ATCTCATGTTAGTGCTTGGG+TGG 0.606175 1_1:-66506944 Msa0037490:CDS
CCAAGAAGATAGCAATAATG+GGG 0.612634 1_1:-66507239 Msa0037490:CDS
CTTACATTGAGTGATATGAA+GGG 0.613061 1_1:+66508072 None:intergenic
TCATGGAAGCCCCTTCTCAA+CGG 0.620549 1_1:-66508187 Msa0037490:CDS
ACAATGAGTATGCTGATAAG+GGG 0.629847 1_1:-66507284 Msa0037490:CDS
AGTTTGTTAACATTAACTTG+AGG 0.640235 1_1:-66508116 Msa0037490:CDS
CAGAGTTGCAGTAACCCGCA+TGG 0.653094 1_1:+66508161 None:intergenic
TCTGAGTCCAAATACTTGGG+AGG 0.681272 1_1:-66507054 Msa0037490:CDS
CAAGAAGATAGCAATAATGG+GGG 0.701769 1_1:-66507238 Msa0037490:CDS
TAAATGATGCAAATCCACCA+AGG 0.702241 1_1:+66507020 None:intergenic
AGTTGCAGTAACCCGCATGG+TGG 0.707787 1_1:+66508164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr1_1:66506754-66506773 Msa0037490:three_prime_UTR 0.0%
!! TATATATATATATATATATA+GGG - chr1_1:66506755-66506774 Msa0037490:three_prime_UTR 0.0%
!! TATATATATATATATATATA+GGG + chr1_1:66506755-66506774 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr1_1:66506754-66506773 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr1_1:66506754-66506773 Msa0037490:three_prime_UTR 0.0%
!! TATATATATATATATATATA+GGG - chr1_1:66506755-66506774 Msa0037490:three_prime_UTR 0.0%
!! TATATATATATATATATATA+GGG + chr1_1:66506755-66506774 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr1_1:66506754-66506773 None:intergenic 0.0%
!!! ATCAATATTACATTTTTGAA+AGG + chr1_1:66508131-66508150 None:intergenic 15.0%
!!! AAAATGTAATATTGATTTGT+TGG - chr1_1:66508135-66508154 Msa0037490:CDS 15.0%
!!! AAATGTAATATTGATTTGTT+GGG - chr1_1:66508136-66508155 Msa0037490:CDS 15.0%
!! ATGATATATTTCTCTTAATT+AGG + chr1_1:66506523-66506542 None:intergenic 15.0%
!!! ATCAATATTACATTTTTGAA+AGG + chr1_1:66508131-66508150 None:intergenic 15.0%
!!! AAAATGTAATATTGATTTGT+TGG - chr1_1:66508135-66508154 Msa0037490:CDS 15.0%
!!! AAATGTAATATTGATTTGTT+GGG - chr1_1:66508136-66508155 Msa0037490:CDS 15.0%
!!! TTGTTTTTCAATTCTGTTTT+TGG - chr1_1:66507962-66507981 Msa0037490:intron 20.0%
!!! TTTGATTCGAGTTATTTTTA+TGG + chr1_1:66508079-66508098 None:intergenic 20.0%
!!! TTGTTTTTCAATTCTGTTTT+TGG - chr1_1:66507962-66507981 Msa0037490:intron 20.0%
!!! TTTGATTCGAGTTATTTTTA+TGG + chr1_1:66508079-66508098 None:intergenic 20.0%
! TTAATTGATCTGCTAAATCA+TGG - chr1_1:66506572-66506591 Msa0037490:three_prime_UTR 25.0%
!!! AGTTTGTTAACATTAACTTG+AGG - chr1_1:66506679-66506698 Msa0037490:three_prime_UTR 25.0%
! GCAAGTAAATAACTAAAAAG+TGG - chr1_1:66506828-66506847 Msa0037490:three_prime_UTR 25.0%
! GCAAGTAAATAACTAAAAAG+TGG - chr1_1:66506828-66506847 Msa0037490:three_prime_UTR 25.0%
!! ATCAATTAGTTTGATCAATG+TGG + chr1_1:66507183-66507202 None:intergenic 25.0%
! AAAATTGAAATGCAGAATCA+AGG - chr1_1:66507469-66507488 Msa0037490:intron 25.0%
! AAATTGAAATGCAGAATCAA+GGG - chr1_1:66507470-66507489 Msa0037490:intron 25.0%
!! TCATTCTCTTCAACAATTTT+TGG + chr1_1:66507678-66507697 None:intergenic 25.0%
! TTCATCAAGTAATGAAAAGT+AGG + chr1_1:66507801-66507820 None:intergenic 25.0%
!! TACCTAATTAAGACAGTTTT+TGG - chr1_1:66507919-66507938 Msa0037490:intron 25.0%
! ATCCAAAAACTGTCTTAATT+AGG + chr1_1:66507924-66507943 None:intergenic 25.0%
!!! ATTACATTTTTGAAAGGAAC+CGG + chr1_1:66508125-66508144 None:intergenic 25.0%
! TACACTTGAAAAATGACAAT+AGG + chr1_1:66508203-66508222 None:intergenic 25.0%
!! TTTCAAGTGTACTGTAAAAT+AGG - chr1_1:66508212-66508231 Msa0037490:exon 25.0%
! TTAATTGATCTGCTAAATCA+TGG - chr1_1:66506572-66506591 Msa0037490:three_prime_UTR 25.0%
!!! AGTTTGTTAACATTAACTTG+AGG - chr1_1:66506679-66506698 Msa0037490:three_prime_UTR 25.0%
! GCAAGTAAATAACTAAAAAG+TGG - chr1_1:66506828-66506847 Msa0037490:three_prime_UTR 25.0%
! GCAAGTAAATAACTAAAAAG+TGG - chr1_1:66506828-66506847 Msa0037490:three_prime_UTR 25.0%
!! ATCAATTAGTTTGATCAATG+TGG + chr1_1:66507183-66507202 None:intergenic 25.0%
! AAAATTGAAATGCAGAATCA+AGG - chr1_1:66507469-66507488 Msa0037490:intron 25.0%
! AAATTGAAATGCAGAATCAA+GGG - chr1_1:66507470-66507489 Msa0037490:intron 25.0%
!! TCATTCTCTTCAACAATTTT+TGG + chr1_1:66507678-66507697 None:intergenic 25.0%
! TTCATCAAGTAATGAAAAGT+AGG + chr1_1:66507801-66507820 None:intergenic 25.0%
!! TACCTAATTAAGACAGTTTT+TGG - chr1_1:66507919-66507938 Msa0037490:intron 25.0%
! ATCCAAAAACTGTCTTAATT+AGG + chr1_1:66507924-66507943 None:intergenic 25.0%
!!! ATTACATTTTTGAAAGGAAC+CGG + chr1_1:66508125-66508144 None:intergenic 25.0%
! TACACTTGAAAAATGACAAT+AGG + chr1_1:66508203-66508222 None:intergenic 25.0%
!! TTTCAAGTGTACTGTAAAAT+AGG - chr1_1:66508212-66508231 Msa0037490:exon 25.0%
ATGGCAACAATAAAAGTTCA+TGG - chr1_1:66506591-66506610 Msa0037490:three_prime_UTR 30.0%
! GTTAACATTAACTTGAGGAA+TGG - chr1_1:66506684-66506703 Msa0037490:three_prime_UTR 30.0%
CTTACATTGAGTGATATGAA+GGG + chr1_1:66506726-66506745 None:intergenic 30.0%
TTATAGCAACATACACCTTA+GGG + chr1_1:66506863-66506882 None:intergenic 30.0%
ACCTTCTAACAATAACAAGT+GGG - chr1_1:66506886-66506905 Msa0037490:exon 30.0%
ACTCCCACATAAAAATTAGT+GGG - chr1_1:66507034-66507053 Msa0037490:CDS 30.0%
! ACACCCACTAATTTTTATGT+GGG + chr1_1:66507040-66507059 None:intergenic 30.0%
! ATTAGTTTGATCAATGTGGT+TGG + chr1_1:66507179-66507198 None:intergenic 30.0%
!!! GTTTCTTATCATTTTTTGCG+AGG + chr1_1:66507354-66507373 None:intergenic 30.0%
GAGACACGATAATTTAACAT+TGG + chr1_1:66507396-66507415 None:intergenic 30.0%
TAACAATGAGTATGCTGATA+AGG - chr1_1:66507509-66507528 Msa0037490:intron 30.0%
AACAATGAGTATGCTGATAA+GGG - chr1_1:66507510-66507529 Msa0037490:intron 30.0%
TCCAAGAAGATAGCAATAAT+GGG - chr1_1:66507555-66507574 Msa0037490:CDS 30.0%
! AAGTAGCATCAAAACTTGTT+CGG - chr1_1:66507613-66507632 Msa0037490:intron 30.0%
TTGGGGATAAAGAGTTTATT+TGG - chr1_1:66507639-66507658 Msa0037490:intron 30.0%
! GAGTTTATTTGGAATTCCTT+TGG - chr1_1:66507650-66507669 Msa0037490:intron 30.0%
!! TCAACAATTTTTGGATCCAA+AGG + chr1_1:66507669-66507688 None:intergenic 30.0%
ATCAAGAATGCTATCCAATT+TGG + chr1_1:66507703-66507722 None:intergenic 30.0%
TCGTGATTCAAACAATTTCT+TGG + chr1_1:66507832-66507851 None:intergenic 30.0%
ACTGTCTTAATTAGGTATCA+TGG + chr1_1:66507916-66507935 None:intergenic 30.0%
ACTCTCACTTCGATTATTTA+TGG + chr1_1:66508011-66508030 None:intergenic 30.0%
! TTTTTATGGAAATGTGTGCT+TGG + chr1_1:66508065-66508084 None:intergenic 30.0%
ATAACTCGAATCAAAGACAT+TGG - chr1_1:66508084-66508103 Msa0037490:CDS 30.0%
! GAATCAAAGACATTGGTTAA+GGG - chr1_1:66508091-66508110 Msa0037490:CDS 30.0%
ATGGCAACAATAAAAGTTCA+TGG - chr1_1:66506591-66506610 Msa0037490:three_prime_UTR 30.0%
! GTTAACATTAACTTGAGGAA+TGG - chr1_1:66506684-66506703 Msa0037490:three_prime_UTR 30.0%
CTTACATTGAGTGATATGAA+GGG + chr1_1:66506726-66506745 None:intergenic 30.0%
TTATAGCAACATACACCTTA+GGG + chr1_1:66506863-66506882 None:intergenic 30.0%
ACCTTCTAACAATAACAAGT+GGG - chr1_1:66506886-66506905 Msa0037490:exon 30.0%
ACTCCCACATAAAAATTAGT+GGG - chr1_1:66507034-66507053 Msa0037490:CDS 30.0%
! ACACCCACTAATTTTTATGT+GGG + chr1_1:66507040-66507059 None:intergenic 30.0%
! ATTAGTTTGATCAATGTGGT+TGG + chr1_1:66507179-66507198 None:intergenic 30.0%
!!! GTTTCTTATCATTTTTTGCG+AGG + chr1_1:66507354-66507373 None:intergenic 30.0%
GAGACACGATAATTTAACAT+TGG + chr1_1:66507396-66507415 None:intergenic 30.0%
TAACAATGAGTATGCTGATA+AGG - chr1_1:66507509-66507528 Msa0037490:intron 30.0%
AACAATGAGTATGCTGATAA+GGG - chr1_1:66507510-66507529 Msa0037490:intron 30.0%
TCCAAGAAGATAGCAATAAT+GGG - chr1_1:66507555-66507574 Msa0037490:CDS 30.0%
! AAGTAGCATCAAAACTTGTT+CGG - chr1_1:66507613-66507632 Msa0037490:intron 30.0%
TTGGGGATAAAGAGTTTATT+TGG - chr1_1:66507639-66507658 Msa0037490:intron 30.0%
! GAGTTTATTTGGAATTCCTT+TGG - chr1_1:66507650-66507669 Msa0037490:intron 30.0%
!! TCAACAATTTTTGGATCCAA+AGG + chr1_1:66507669-66507688 None:intergenic 30.0%
ATCAAGAATGCTATCCAATT+TGG + chr1_1:66507703-66507722 None:intergenic 30.0%
TCGTGATTCAAACAATTTCT+TGG + chr1_1:66507832-66507851 None:intergenic 30.0%
ACTGTCTTAATTAGGTATCA+TGG + chr1_1:66507916-66507935 None:intergenic 30.0%
ACTCTCACTTCGATTATTTA+TGG + chr1_1:66508011-66508030 None:intergenic 30.0%
! TTTTTATGGAAATGTGTGCT+TGG + chr1_1:66508065-66508084 None:intergenic 30.0%
ATAACTCGAATCAAAGACAT+TGG - chr1_1:66508084-66508103 Msa0037490:CDS 30.0%
! GAATCAAAGACATTGGTTAA+GGG - chr1_1:66508091-66508110 Msa0037490:CDS 30.0%
GCTTACATTGAGTGATATGA+AGG + chr1_1:66506727-66506746 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_1:66506796-66506815 Msa0037490:three_prime_UTR 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_1:66506802-66506821 None:intergenic 35.0%
AAGTGGTTAAATACACCCTA+AGG - chr1_1:66506845-66506864 Msa0037490:three_prime_UTR 35.0%
GTTATAGCAACATACACCTT+AGG + chr1_1:66506864-66506883 None:intergenic 35.0%
CACCTTCTAACAATAACAAG+TGG - chr1_1:66506885-66506904 Msa0037490:exon 35.0%
!! ACCCACTTGTTATTGTTAGA+AGG + chr1_1:66506890-66506909 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG - chr1_1:66506909-66506928 Msa0037490:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_1:66506796-66506815 Msa0037490:three_prime_UTR 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_1:66506802-66506821 None:intergenic 35.0%
AAGTGGTTAATTACACCCTA+AGG - chr1_1:66506994-66507013 Msa0037490:CDS 35.0%
TTTAGCAAAGCTACACCTTA+GGG + chr1_1:66507012-66507031 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG + chr1_1:66507013-66507032 None:intergenic 35.0%
CACTCCCACATAAAAATTAG+TGG - chr1_1:66507033-66507052 Msa0037490:CDS 35.0%
! CACACCCACTAATTTTTATG+TGG + chr1_1:66507041-66507060 None:intergenic 35.0%
TTCTTTATGTTGCAGCCATT+TGG - chr1_1:66507206-66507225 Msa0037490:CDS 35.0%
AAATCTCCATCTTCAAAAGC+TGG + chr1_1:66507239-66507258 None:intergenic 35.0%
! GATGGAGATTTAAAGCTCTT+TGG - chr1_1:66507248-66507267 Msa0037490:CDS 35.0%
! TTTTTGCGAGGAGTGAAATT+AGG + chr1_1:66507342-66507361 None:intergenic 35.0%
ACAATGAGTATGCTGATAAG+GGG - chr1_1:66507511-66507530 Msa0037490:intron 35.0%
CTCCAAGAAGATAGCAATAA+TGG - chr1_1:66507554-66507573 Msa0037490:CDS 35.0%
CCAAGAAGATAGCAATAATG+GGG - chr1_1:66507556-66507575 Msa0037490:CDS 35.0%
CAAGAAGATAGCAATAATGG+GGG - chr1_1:66507557-66507576 Msa0037490:CDS 35.0%
! AGTAGCATCAAAACTTGTTC+GGG - chr1_1:66507614-66507633 Msa0037490:intron 35.0%
! ATCAAAACTTGTTCGGGAAT+TGG - chr1_1:66507620-66507639 Msa0037490:intron 35.0%
! TCAAAACTTGTTCGGGAATT+GGG - chr1_1:66507621-66507640 Msa0037490:intron 35.0%
TGAAGAGAATGAAGCCAAAT+TGG - chr1_1:66507686-66507705 Msa0037490:intron 35.0%
ATTGTCTGAGTCCAAATACT+TGG - chr1_1:66507737-66507756 Msa0037490:intron 35.0%
TTGTCTGAGTCCAAATACTT+GGG - chr1_1:66507738-66507757 Msa0037490:intron 35.0%
TAAATGATGCAAATCCACCA+AGG + chr1_1:66507778-66507797 None:intergenic 35.0%
CTTAATTAGGTATCATGGCA+AGG + chr1_1:66507911-66507930 None:intergenic 35.0%
GGACAAAGTCGATAAATACT+TGG + chr1_1:66507990-66508009 None:intergenic 35.0%
GAATGAAGATTCTTCACTGA+AGG + chr1_1:66508040-66508059 None:intergenic 35.0%
! CGAATCAAAGACATTGGTTA+AGG - chr1_1:66508090-66508109 Msa0037490:CDS 35.0%
GCTTACATTGAGTGATATGA+AGG + chr1_1:66506727-66506746 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_1:66506796-66506815 Msa0037490:three_prime_UTR 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_1:66506802-66506821 None:intergenic 35.0%
AAGTGGTTAAATACACCCTA+AGG - chr1_1:66506845-66506864 Msa0037490:three_prime_UTR 35.0%
GTTATAGCAACATACACCTT+AGG + chr1_1:66506864-66506883 None:intergenic 35.0%
CACCTTCTAACAATAACAAG+TGG - chr1_1:66506885-66506904 Msa0037490:exon 35.0%
!! ACCCACTTGTTATTGTTAGA+AGG + chr1_1:66506890-66506909 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG - chr1_1:66506909-66506928 Msa0037490:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_1:66506796-66506815 Msa0037490:three_prime_UTR 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_1:66506802-66506821 None:intergenic 35.0%
AAGTGGTTAATTACACCCTA+AGG - chr1_1:66506994-66507013 Msa0037490:CDS 35.0%
TTTAGCAAAGCTACACCTTA+GGG + chr1_1:66507012-66507031 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG + chr1_1:66507013-66507032 None:intergenic 35.0%
CACTCCCACATAAAAATTAG+TGG - chr1_1:66507033-66507052 Msa0037490:CDS 35.0%
! CACACCCACTAATTTTTATG+TGG + chr1_1:66507041-66507060 None:intergenic 35.0%
TTCTTTATGTTGCAGCCATT+TGG - chr1_1:66507206-66507225 Msa0037490:CDS 35.0%
AAATCTCCATCTTCAAAAGC+TGG + chr1_1:66507239-66507258 None:intergenic 35.0%
! GATGGAGATTTAAAGCTCTT+TGG - chr1_1:66507248-66507267 Msa0037490:CDS 35.0%
! TTTTTGCGAGGAGTGAAATT+AGG + chr1_1:66507342-66507361 None:intergenic 35.0%
ACAATGAGTATGCTGATAAG+GGG - chr1_1:66507511-66507530 Msa0037490:intron 35.0%
CTCCAAGAAGATAGCAATAA+TGG - chr1_1:66507554-66507573 Msa0037490:CDS 35.0%
CCAAGAAGATAGCAATAATG+GGG - chr1_1:66507556-66507575 Msa0037490:CDS 35.0%
CAAGAAGATAGCAATAATGG+GGG - chr1_1:66507557-66507576 Msa0037490:CDS 35.0%
! AGTAGCATCAAAACTTGTTC+GGG - chr1_1:66507614-66507633 Msa0037490:intron 35.0%
! ATCAAAACTTGTTCGGGAAT+TGG - chr1_1:66507620-66507639 Msa0037490:intron 35.0%
! TCAAAACTTGTTCGGGAATT+GGG - chr1_1:66507621-66507640 Msa0037490:intron 35.0%
TGAAGAGAATGAAGCCAAAT+TGG - chr1_1:66507686-66507705 Msa0037490:intron 35.0%
ATTGTCTGAGTCCAAATACT+TGG - chr1_1:66507737-66507756 Msa0037490:intron 35.0%
TTGTCTGAGTCCAAATACTT+GGG - chr1_1:66507738-66507757 Msa0037490:intron 35.0%
TAAATGATGCAAATCCACCA+AGG + chr1_1:66507778-66507797 None:intergenic 35.0%
CTTAATTAGGTATCATGGCA+AGG + chr1_1:66507911-66507930 None:intergenic 35.0%
GGACAAAGTCGATAAATACT+TGG + chr1_1:66507990-66508009 None:intergenic 35.0%
GAATGAAGATTCTTCACTGA+AGG + chr1_1:66508040-66508059 None:intergenic 35.0%
! CGAATCAAAGACATTGGTTA+AGG - chr1_1:66508090-66508109 Msa0037490:CDS 35.0%
GAGGAATGGTGAACACAAAA+AGG - chr1_1:66506698-66506717 Msa0037490:three_prime_UTR 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_1:66506795-66506814 Msa0037490:three_prime_UTR 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_1:66506803-66506822 None:intergenic 40.0%
GTGTTCTAGCAAATGCCTAT+AGG + chr1_1:66506927-66506946 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_1:66506795-66506814 Msa0037490:three_prime_UTR 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_1:66506803-66506822 None:intergenic 40.0%
TCAATGTGGTTGGAACAAGA+AGG + chr1_1:66507169-66507188 None:intergenic 40.0%
AAAGCTGGAACTTGACCAAA+TGG + chr1_1:66507224-66507243 None:intergenic 40.0%
!! CAAGTTCCAGCTTTTGAAGA+TGG - chr1_1:66507230-66507249 Msa0037490:CDS 40.0%
TGTCATGTGCTACGTAAATC+AGG + chr1_1:66507289-66507308 None:intergenic 40.0%
CTAATATTTGTGCGAGCACT+TGG - chr1_1:66507417-66507436 Msa0037490:intron 40.0%
! GGAGTCATTGCTTGTTAACT+TGG + chr1_1:66507538-66507557 None:intergenic 40.0%
CCCCATTATTGCTATCTTCT+TGG + chr1_1:66507559-66507578 None:intergenic 40.0%
! AGATAGCAATAATGGGGGTA+TGG - chr1_1:66507562-66507581 Msa0037490:CDS 40.0%
! ATGCTACTTGATCGAAGTGT+TGG + chr1_1:66507602-66507621 None:intergenic 40.0%
! CAAAACTTGTTCGGGAATTG+GGG - chr1_1:66507622-66507641 Msa0037490:intron 40.0%
ACGATCTCATGTTAGTGCTT+GGG - chr1_1:66507848-66507867 Msa0037490:intron 40.0%
TTGGTTAAGGGATTTGAGTC+CGG - chr1_1:66508103-66508122 Msa0037490:CDS 40.0%
GAGGAATGGTGAACACAAAA+AGG - chr1_1:66506698-66506717 Msa0037490:three_prime_UTR 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_1:66506795-66506814 Msa0037490:three_prime_UTR 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_1:66506803-66506822 None:intergenic 40.0%
GTGTTCTAGCAAATGCCTAT+AGG + chr1_1:66506927-66506946 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_1:66506795-66506814 Msa0037490:three_prime_UTR 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_1:66506803-66506822 None:intergenic 40.0%
TCAATGTGGTTGGAACAAGA+AGG + chr1_1:66507169-66507188 None:intergenic 40.0%
AAAGCTGGAACTTGACCAAA+TGG + chr1_1:66507224-66507243 None:intergenic 40.0%
!! CAAGTTCCAGCTTTTGAAGA+TGG - chr1_1:66507230-66507249 Msa0037490:CDS 40.0%
TGTCATGTGCTACGTAAATC+AGG + chr1_1:66507289-66507308 None:intergenic 40.0%
CTAATATTTGTGCGAGCACT+TGG - chr1_1:66507417-66507436 Msa0037490:intron 40.0%
! GGAGTCATTGCTTGTTAACT+TGG + chr1_1:66507538-66507557 None:intergenic 40.0%
CCCCATTATTGCTATCTTCT+TGG + chr1_1:66507559-66507578 None:intergenic 40.0%
! AGATAGCAATAATGGGGGTA+TGG - chr1_1:66507562-66507581 Msa0037490:CDS 40.0%
! ATGCTACTTGATCGAAGTGT+TGG + chr1_1:66507602-66507621 None:intergenic 40.0%
! CAAAACTTGTTCGGGAATTG+GGG - chr1_1:66507622-66507641 Msa0037490:intron 40.0%
ACGATCTCATGTTAGTGCTT+GGG - chr1_1:66507848-66507867 Msa0037490:intron 40.0%
TTGGTTAAGGGATTTGAGTC+CGG - chr1_1:66508103-66508122 Msa0037490:CDS 40.0%
TCTGAGTCCAAATACTTGGG+AGG - chr1_1:66507741-66507760 Msa0037490:intron 45.0%
AGAGTCACCTCCCAAGTATT+TGG + chr1_1:66507751-66507770 None:intergenic 45.0%
CACGATCTCATGTTAGTGCT+TGG - chr1_1:66507847-66507866 Msa0037490:intron 45.0%
ATCTCATGTTAGTGCTTGGG+TGG - chr1_1:66507851-66507870 Msa0037490:intron 45.0%
ATATCACTGCAAGACCAGCT+TGG - chr1_1:66507877-66507896 Msa0037490:intron 45.0%
TCTGAGTCCAAATACTTGGG+AGG - chr1_1:66507741-66507760 Msa0037490:intron 45.0%
AGAGTCACCTCCCAAGTATT+TGG + chr1_1:66507751-66507770 None:intergenic 45.0%
CACGATCTCATGTTAGTGCT+TGG - chr1_1:66507847-66507866 Msa0037490:intron 45.0%
ATCTCATGTTAGTGCTTGGG+TGG - chr1_1:66507851-66507870 Msa0037490:intron 45.0%
ATATCACTGCAAGACCAGCT+TGG - chr1_1:66507877-66507896 Msa0037490:intron 45.0%
!! ATATATATATATATATATAG+GGG - chr1_1:66506762-66506781 Msa0037490:three_prime_UTR 5.0%
!! ATATATATATATATATATAG+GGG + chr1_1:66506762-66506781 None:intergenic 5.0%
!! ATATATATATATATATATAG+GGG - chr1_1:66506762-66506781 Msa0037490:three_prime_UTR 5.0%
!! ATATATATATATATATATAG+GGG + chr1_1:66506762-66506781 None:intergenic 5.0%
TCATGGAAGCCCCTTCTCAA+CGG - chr1_1:66506608-66506627 Msa0037490:three_prime_UTR 50.0%
! AATGGGGGTATGGTCTGAAG+TGG - chr1_1:66507572-66507591 Msa0037490:CDS 50.0%
AGGTGACTCTTTCACCTTGG+TGG - chr1_1:66507761-66507780 Msa0037490:intron 50.0%
GCAAGGACTTTAGACCAAGC+TGG + chr1_1:66507894-66507913 None:intergenic 50.0%
TCATGGAAGCCCCTTCTCAA+CGG - chr1_1:66506608-66506627 Msa0037490:three_prime_UTR 50.0%
! AATGGGGGTATGGTCTGAAG+TGG - chr1_1:66507572-66507591 Msa0037490:CDS 50.0%
AGGTGACTCTTTCACCTTGG+TGG - chr1_1:66507761-66507780 Msa0037490:intron 50.0%
GCAAGGACTTTAGACCAAGC+TGG + chr1_1:66507894-66507913 None:intergenic 50.0%
AGTTGCAGTAACCCGCATGG+TGG + chr1_1:66506634-66506653 None:intergenic 55.0%
CAGAGTTGCAGTAACCCGCA+TGG + chr1_1:66506637-66506656 None:intergenic 55.0%
GGGAGGTGACTCTTTCACCT+TGG - chr1_1:66507758-66507777 Msa0037490:intron 55.0%
AGTTGCAGTAACCCGCATGG+TGG + chr1_1:66506634-66506653 None:intergenic 55.0%
CAGAGTTGCAGTAACCCGCA+TGG + chr1_1:66506637-66506656 None:intergenic 55.0%
GGGAGGTGACTCTTTCACCT+TGG - chr1_1:66507758-66507777 Msa0037490:intron 55.0%
GCATGGTGGCCGTTGAGAAG+GGG + chr1_1:66506620-66506639 None:intergenic 60.0%
CGCATGGTGGCCGTTGAGAA+GGG + chr1_1:66506621-66506640 None:intergenic 60.0%
CCTTCTCAACGGCCACCATG+CGG - chr1_1:66506619-66506638 Msa0037490:three_prime_UTR 60.0%
CTTCTCAACGGCCACCATGC+GGG - chr1_1:66506620-66506639 Msa0037490:three_prime_UTR 60.0%
GCATGGTGGCCGTTGAGAAG+GGG + chr1_1:66506620-66506639 None:intergenic 60.0%
CGCATGGTGGCCGTTGAGAA+GGG + chr1_1:66506621-66506640 None:intergenic 60.0%
CCTTCTCAACGGCCACCATG+CGG - chr1_1:66506619-66506638 Msa0037490:three_prime_UTR 60.0%
CTTCTCAACGGCCACCATGC+GGG - chr1_1:66506620-66506639 Msa0037490:three_prime_UTR 60.0%
CCGCATGGTGGCCGTTGAGA+AGG + chr1_1:66506622-66506641 None:intergenic 65.0%
CCGCATGGTGGCCGTTGAGA+AGG + chr1_1:66506622-66506641 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66506523 66508294 66506523 ID=Msa0037490;Name=Msa0037490
chr1_1 mRNA 66506523 66508294 66506523 ID=Msa0037490-mRNA-1;Parent=Msa0037490;Name=Msa0037490-mRNA-1;_AED=0.22;_eAED=0.22;_QI=68|1|1|1|1|1|3|365|214
chr1_1 exon 66506523 66507333 66506523 ID=Msa0037490-mRNA-1:exon:21524;Parent=Msa0037490-mRNA-1
chr1_1 exon 66507548 66507596 66507548 ID=Msa0037490-mRNA-1:exon:21523;Parent=Msa0037490-mRNA-1
chr1_1 exon 66508077 66508294 66508077 ID=Msa0037490-mRNA-1:exon:21522;Parent=Msa0037490-mRNA-1
chr1_1 five_prime_UTR 66508227 66508294 66508227 ID=Msa0037490-mRNA-1:five_prime_utr;Parent=Msa0037490-mRNA-1
chr1_1 CDS 66508077 66508226 66508077 ID=Msa0037490-mRNA-1:cds;Parent=Msa0037490-mRNA-1
chr1_1 CDS 66507548 66507596 66507548 ID=Msa0037490-mRNA-1:cds;Parent=Msa0037490-mRNA-1
chr1_1 CDS 66506888 66507333 66506888 ID=Msa0037490-mRNA-1:cds;Parent=Msa0037490-mRNA-1
chr1_1 three_prime_UTR 66506523 66506887 66506523 ID=Msa0037490-mRNA-1:three_prime_utr;Parent=Msa0037490-mRNA-1
Gene Sequence

>Msa0037490

ATGGCAACAATAAAAGTTCATGGAAGCCCCTTCTCAACGGCCACCATGCGGGTTACTGCAACTCTGTATGAAAAACAGATTGAGTTTGAGTTTGTTAACATTAACTTGAGGAATGGTGAACACAAAAAGGAACCCTTCATATCACTCAATCCATTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTCTTTGAATCAAGGGCGATAACACAATATATTAACAATGAGTATGCTGATAAGGGGACCAAGTTAACAAGCAATGACTCCAAGAAGATAGCAATAATGGGGGTATGGTCTGAAGTGGAGAGCCAACACTTCGATCAAGTAGCATCAAAACTTGTTCGGGAATTGGGGATAAAGAGTTTATTTGGAATTCCTTTGGATCCAAAAATTGTTGAAGAGAATGAAGCCAAATTGGATAGCATTCTTGATGTGTATGAGAAAAGATTGTCTGAGTCCAAATACTTGGGAGGTGACTCTTTCACCTTGGTGGATTTGCATCATTTACCTACTTTTCATTACTTGATGAAGTCACAGACCAAGAAATTGTTTGAATCACGATCTCATGTTAGTGCTTGGGTGGCTGATATCACTGCAAGACCAGCTTGGTCTAAAGTCCTTGCCATGATACCTAATTAA
Protein sequence

>Msa0037490

MATIKVHGSPFSTATMRVTATLYEKQIEFEFVNINLRNGEHKKEPFISLNPFGQVPAFEDGDLKLFESRAITQYINNEYADKGTKLTSNDSKKIAIMGVWSEVESQHFDQVASKLVRELGIKSLFGIPLDPKIVEENEAKLDSILDVYEKRLSESKYLGGDSFTLVDLHHLPTFHYLMKSQTKKLFESRSHVSAWVADITARPAWSKVLAMIPN*