AlfalfaGEDB | Msa0709440

M. sativa cultivar zhongmu-4 / Msa0709440

KEGG: K10398
GO: GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939
PFAM: PF00225.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0709440	XP_003625856.1	99.206	1007	8	0	1	1007	1	1007	0.0	2058

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0709440	sp\|O23826\|KN5C_TOBAC	72.790	1007	272	2	1	1007	1	1005	0.0	1538

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0709440	Q2HTE3	99.206	1007	8	0	1	1007	1	1007	0.0	2058

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0709440	0.845381	4.207806e-59	-8.615850e-47
Msa0005020	Msa0709440	0.861497	9.844322e-64	-8.615850e-47
Msa0005890	Msa0709440	0.842013	3.350228e-58	-8.615850e-47
Msa0014770	Msa0709440	0.804467	2.129989e-49	-8.615850e-47
Msa0015150	Msa0709440	0.807233	5.586794e-50	-8.615850e-47
Msa0015570	Msa0709440	0.817423	3.323335e-52	-8.615850e-47
Msa0016040	Msa0709440	0.888788	4.326874e-73	-8.615850e-47
Msa0016530	Msa0709440	0.822388	2.432766e-53	-8.615850e-47
Msa0017670	Msa0709440	0.819534	1.104375e-52	-8.615850e-47
Msa0017950	Msa0709440	0.804886	1.742096e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0709440	MtrunA17_Chr7g0266631	99.206	1007	8	0	1	1007	1	1007	0.0	2058
Msa0709440	MtrunA17_Chr1g0178411	75.896	1004	241	1	4	1007	8	1010	0.0	1580
Msa0709440	MtrunA17_Chr2g0327581	48.617	1012	506	6	4	1007	44	1049	0.0	906
Msa0709440	MtrunA17_Chr1g0182151	42.240	973	552	6	3	972	48	1013	0.0	726
Msa0709440	MtrunA17_Chr3g0132921	38.287	397	206	12	9	390	9	381	5.79e-72	248
Msa0709440	MtrunA17_Chr4g0069141	40.898	401	202	10	9	398	153	529	9.47e-70	255
Msa0709440	MtrunA17_Chr4g0045381	40.404	396	191	9	9	391	193	556	4.30e-68	250
Msa0709440	MtrunA17_Chr1g0193221	36.406	434	229	9	10	430	4	403	5.96e-68	248
Msa0709440	MtrunA17_Chr5g0427481	38.000	400	212	10	10	395	18	395	2.62e-67	246
Msa0709440	MtrunA17_Chr3g0134191	38.519	405	204	10	10	388	9	394	3.26e-67	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0709440	AT2G36200.1	70.618	1004	294	1	4	1007	7	1009	0.0	1468
Msa0709440	AT2G36200.2	68.502	1035	294	2	4	1007	7	1040	0.0	1450
Msa0709440	AT3G45850.2	48.842	993	494	6	4	991	50	1033	0.0	904
Msa0709440	AT3G45850.1	48.842	993	494	6	4	991	50	1033	0.0	904
Msa0709440	AT2G28620.1	47.164	1005	523	5	4	1007	45	1042	0.0	891
Msa0709440	AT2G28620.3	47.065	1005	524	5	4	1007	45	1042	0.0	887
Msa0709440	AT2G28620.2	47.065	1005	524	5	4	1007	45	1042	0.0	887
Msa0709440	AT2G37420.1	42.315	1002	570	4	6	1007	45	1038	0.0	776
Msa0709440	AT2G37420.2	42.315	1002	570	4	6	1007	45	1038	0.0	776
Msa0709440	AT5G60930.2	36.501	463	236	14	10	441	7	442	5.06e-69	252

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Find 218 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGCTTAACAGCCCT+CGG	0.532341	5_1:+607065	None:intergenic
AAAATGTCTGGTAAAGAAAA+AGG	0.333790	5_1:-607808	Msa0709440:CDS
AAACACATGCTTGATGAGCT+AGG	0.492131	5_1:+604809	None:intergenic
AAACTTGAACAAGACTAGCA+AGG	0.654128	5_1:-605047	Msa0709440:CDS
AAAGAGATTCAATCTTAGCG+TGG	0.620048	5_1:-603748	Msa0709440:intron
AAAGCAACTCACCTGACTTA+AGG	0.490808	5_1:+605813	None:intergenic
AAAGCAGCTGCCTCTTATGG+AGG	0.615652	5_1:-606913	Msa0709440:CDS
AAAGGAGATTTCTGAGCGAT+CGG	0.540594	5_1:-603718	Msa0709440:CDS
AAAGGTGGAGTTCTTGTGAG+AGG	0.552341	5_1:-606885	Msa0709440:CDS
AAATATTGAGCCAGCTTCTG+TGG	0.569706	5_1:+603978	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTTTCTCTTTCTCTTCT+GGG	+	chr5_1:601717-601736	None:intergenic	30.0%
TGCATTTCAAAATCTAACAC+TGG	-	chr5_1:601916-601935	Msa0709440:CDS	30.0%
GGAATTAATTAATGGTAGAC+TGG	-	chr5_1:602121-602140	Msa0709440:intron	30.0%
ATTTATACTCTTCTCGAAAG+AGG	-	chr5_1:602769-602788	Msa0709440:intron	30.0%
TTTATACTCTTCTCGAAAGA+GGG	-	chr5_1:602770-602789	Msa0709440:intron	30.0%
CTTTACTTAACAAACAATCC+AGG	-	chr5_1:602818-602837	Msa0709440:intron	30.0%
TAAGTGTGGTAAACTGAATT+TGG	-	chr5_1:602990-603009	Msa0709440:CDS	30.0%
TCAGAAAATATATCTCGTTC+CGG	-	chr5_1:603027-603046	Msa0709440:intron	30.0%
GAACATTAAAAATAAGCCAG+AGG	-	chr5_1:603501-603520	Msa0709440:CDS	30.0%
TCTTTCAGTCATGTATTTGA+TGG	-	chr5_1:603588-603607	Msa0709440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	601522	608097	601522	ID=Msa0709440;Name=Msa0709440
chr5_1	mRNA	601522	608097	601522	ID=Msa0709440-mRNA-1;Parent=Msa0709440;Name=Msa0709440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=270\|1\|1\|1\|1\|1\|23\|379\|1007
chr5_1	exon	601522	602101	601522	ID=Msa0709440-mRNA-1:exon:296;Parent=Msa0709440-mRNA-1
chr5_1	exon	602187	602338	602187	ID=Msa0709440-mRNA-1:exon:295;Parent=Msa0709440-mRNA-1
chr5_1	exon	602599	602708	602599	ID=Msa0709440-mRNA-1:exon:294;Parent=Msa0709440-mRNA-1
chr5_1	exon	602933	603034	602933	ID=Msa0709440-mRNA-1:exon:293;Parent=Msa0709440-mRNA-1
chr5_1	exon	603112	603317	603112	ID=Msa0709440-mRNA-1:exon:292;Parent=Msa0709440-mRNA-1
chr5_1	exon	603437	603520	603437	ID=Msa0709440-mRNA-1:exon:291;Parent=Msa0709440-mRNA-1
chr5_1	exon	603608	603766	603608	ID=Msa0709440-mRNA-1:exon:290;Parent=Msa0709440-mRNA-1
chr5_1	exon	603909	604016	603909	ID=Msa0709440-mRNA-1:exon:289;Parent=Msa0709440-mRNA-1
chr5_1	exon	604121	604282	604121	ID=Msa0709440-mRNA-1:exon:288;Parent=Msa0709440-mRNA-1
chr5_1	exon	604482	604657	604482	ID=Msa0709440-mRNA-1:exon:287;Parent=Msa0709440-mRNA-1
chr5_1	exon	604752	604838	604752	ID=Msa0709440-mRNA-1:exon:286;Parent=Msa0709440-mRNA-1
chr5_1	exon	604960	605071	604960	ID=Msa0709440-mRNA-1:exon:285;Parent=Msa0709440-mRNA-1
chr5_1	exon	605156	605236	605156	ID=Msa0709440-mRNA-1:exon:284;Parent=Msa0709440-mRNA-1
chr5_1	exon	605345	605398	605345	ID=Msa0709440-mRNA-1:exon:283;Parent=Msa0709440-mRNA-1
chr5_1	exon	605642	605718	605642	ID=Msa0709440-mRNA-1:exon:282;Parent=Msa0709440-mRNA-1
chr5_1	exon	605825	605894	605825	ID=Msa0709440-mRNA-1:exon:281;Parent=Msa0709440-mRNA-1
chr5_1	exon	606097	606253	606097	ID=Msa0709440-mRNA-1:exon:280;Parent=Msa0709440-mRNA-1
chr5_1	exon	606350	606447	606350	ID=Msa0709440-mRNA-1:exon:279;Parent=Msa0709440-mRNA-1
chr5_1	exon	606560	606698	606560	ID=Msa0709440-mRNA-1:exon:278;Parent=Msa0709440-mRNA-1
chr5_1	exon	606780	607129	606780	ID=Msa0709440-mRNA-1:exon:277;Parent=Msa0709440-mRNA-1
chr5_1	exon	607270	607428	607270	ID=Msa0709440-mRNA-1:exon:276;Parent=Msa0709440-mRNA-1
chr5_1	exon	607535	607664	607535	ID=Msa0709440-mRNA-1:exon:275;Parent=Msa0709440-mRNA-1
chr5_1	exon	607778	608097	607778	ID=Msa0709440-mRNA-1:exon:274;Parent=Msa0709440-mRNA-1
chr5_1	five_prime_UTR	607828	608097	607828	ID=Msa0709440-mRNA-1:five_prime_utr;Parent=Msa0709440-mRNA-1
chr5_1	CDS	607778	607827	607778	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	607535	607664	607535	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	607270	607428	607270	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	606780	607129	606780	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	606560	606698	606560	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	606350	606447	606350	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	606097	606253	606097	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	605825	605894	605825	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	605642	605718	605642	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	605345	605398	605345	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	605156	605236	605156	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	604960	605071	604960	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	604752	604838	604752	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	604482	604657	604482	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	604121	604282	604121	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	603909	604016	603909	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	603608	603766	603608	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	603437	603520	603437	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	603112	603317	603112	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	602933	603034	602933	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	602599	602708	602599	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	602187	602338	602187	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	CDS	601901	602101	601901	ID=Msa0709440-mRNA-1:cds;Parent=Msa0709440-mRNA-1
chr5_1	three_prime_UTR	601522	601900	601522	ID=Msa0709440-mRNA-1:three_prime_utr;Parent=Msa0709440-mRNA-1

Gene Sequence

>Msa0709440

ATGTCTGGTAAAGAAAAAGGTGTTAACGTTCAAGTTCTACTTCGTTGCAGGCCGTTTAGTGACGACGAGTTACGAAGCAATGCGCCGCAAGTGGTGACTTGTAACGATTACAGTAGAGAAGTTGCTGTTTCTCAGAATATTGCCGGCAAACACATCGATAGGGTTTTCACCTTCGACAAGGTTTTTGGTCCTTCTGCACAACAAAGAGAACTTTATGAACAAGCTGTTACACCGATAGTAAATGAAGTTTTAGAAGGATTTAATTGTACTATTTTTGCTTATGGTCAAACCGGTACCGGAAAAACATTTACCATGGAAGGAGAATGCAAAAGATCCAAGAGTGGGCCGAATGGGGAGTTGCCTCCAGAAGCAGGAGTGATTCCGAGGGCTGTTAAGCAGATTTTTGACACGCTCGAGGGTCAGAATGCTGAGTATAGTGTGAAAGTTACGTTTTTAGAATTGTATAATGAGGAGATTACTGATTTGCTTGCTCCGGAGGAAATTTCAAAGGTTAGTTTGGAGGAGAAGCAAAAAAAGCAGCTGCCTCTTATGGAGGATGGTAAAGGTGGAGTTCTTGTGAGAGGGTTGGAGGAAGAAATTGTGACGTGTGCGAGTGAAATTTATACTCTTCTCGAAAGAGGGTCTTCCAAAAGACGCACTGCAGAAACTTTACTTAACAAACAATCCAGTCGTTCACATTCGTTGTTTTCAATTACAATCCACATCAAAGAAGCAACCCCTGAAGGTGAAGAACTAATTAAGTGTGGTAAACTGAATTTGGTGGATCTTGCGGGTTCAGAAAATATATCTCGTTCCGGCGCTAGGGAGGGTCGTGCTAGAGAAGCTGGAGAGATTAATAAAAGTTTGCTTACATTAGGGCGAGTGATTAATGCCCTTGTGGAGCACCTTGGTCATATTCCATACAGGGATAGCAAGTTGACTCGTTTACTTCGTGATTCACTTGGGGGAAGAACCAAGACGTGCATTATAGCGACAGTATCCCCCGCTGTTCATTGCTTAGAAGAAACTTTGAGCACATTGGATTATGCACATAGGGCAAAGAACATTAAAAATAAGCCAGAGGTCAACCAAAAAATGATGAAATCAACTCTTATCAAGGATCTTTACGGTGAAATTGAACGCCTTAAGTCAGAGGTTTATGCTACTCGTGAGAAAAATGGGGTCTATATTCCAAAGGAAAGATACTATCAGGAAGAGATTGAGAAGAAGGCTATGGCTGATCAGATTGAGCAGATGGGCATCACAATTGAATCTTATCAGAAGCAACTTGAGGATATGAGAAACAAGTATGATGATCAAGTTCGTCAGTGCTCCGATTTAAGCAACAAACTTGATACCACTGAGAAAAACTTGAACAAGACTAGCAAGGTGCTTGCCAGTAGAGAGGAAGAACTAAAGAAGTGTCGATATACCGTCAATGAAAAGGAGTTCATCATATCTGAACAGAGAAAAGCAGAAAATGCCCTAGCTCATCAAGCATGTGTTTTACGAGCTGATTTAGAGAAAGCTCTTCAGGATAATGCTTCATTATTTGCGAAAATTGGTAGAGAAGATAAACTCAGCTCAGATAATAGAGCTGTAGTGAACAATTTTCAAGCGGAACTTGCCCAGAAGGTTGGTTCTCTTTGCAACACTGTTACAACATCGTTGTCTGAACAGAACGGACATCTACAAGGTGTGGAGAAGCTCTGCCATTCCTTTTTGGGAATTCATGATAAGGCGGCTATCGATTTGAAAGAGAAAATGAAAGACCTGAGGGCGGTGTATGTGTCTCATATTGAGGCAGTGCAAAATGTTGTGCGTTTGCATAAGGCAAGCTCAGATGCATCGTTGGAGGAGTTATCATCTGCCATATCCTCCCACGGTCATTCAATTGAAGAATTCCTTACAACTGCGGCCACAGAAGCTGGCTCAATATTTGACGAGCTTCAGAGCTGTCTTTCAACACAACATGGTGAATTGACACTTTTTGCTAGGGAAGTACGCAATAGATTCAATCTTAGCGTGGAACAAATAAAGGAGATTTCTGAGCGATCGGAAGAATTAGTTGAAAAGCTTTTTGAAGAATCAAAAAATCTTGAAGAGTTTGTAGCACGGGCTGACCAAATGCAAACAGAGAGCATTGATGATTTTAAGAAAGCTTACGAGGAGCAATCAAAATCCGAGTCGGAGAAACTCATTGCTGATATGACTAGCTTGATTTCTGATCACATTCGTCGTCAAGTCCATCTTGTAGACTCAAAGCTTGTTGATCTTAGGGAGAGTGGCATAAAGAACAAGTCATTCTTCGATGGACATGTGTCATCAGTGGAAGATATTACAACCAATGCAAAAAGGAAATGGCAGTCCTTTTGCATACAAGCAGAAAAAGACGCAAAAGATACTGCTGATTACTCTGCAGCAAAGCATTGCCGTATGGAGGTACTCCTGCAGCAAAGTGTTAGTACTGCTCATTCGGCTTTTGGACAAGTGAAGAGGACACATGAGGCTGTAAATGAGTTAGGGGCCAAACATATTTTTGCGACAGAGTCACTTATCAGGAACGCTTGTGAGAGCCATGTGCAGCATGTTGCAGAGGTCAATTCTGCACGAGCAGCAGCCGAGGAAGATGTGGCAAAGAACACTGATGATTTTTTGCAGCAGTTCGATGCCACATCTGCAGAAGAACGTGAATCTGTATGTAGCGTCGTAAATGTTGTGAAAAGCCATGCAAATACACTTGAGATGTTTAGAGAGAATCACTCAGGGCAAGCTGCTTCCATTGAACACAGGGCATGTGAAACTTTTCAGCAGAATTATATGGACTATGAGCCTAGTGGTACAACACCAGTAAGATGTGAGCCTGAGGTTCCAAGTAAGGGTACAATAGACTCTCTTCGAACCTTGCCAATTGAAGCCCTTCTTGAGGAATTCCGGGAAAATAATTCATATGAATCTTCTTCTGATGTAAAGGAGTTGAAACCGTCTCTTATTCCACGTTCTCCTCTCACCCAATTGAATTAA

Protein sequence

>Msa0709440

MSGKEKGVNVQVLLRCRPFSDDELRSNAPQVVTCNDYSREVAVSQNIAGKHIDRVFTFDKVFGPSAQQRELYEQAVTPIVNEVLEGFNCTIFAYGQTGTGKTFTMEGECKRSKSGPNGELPPEAGVIPRAVKQIFDTLEGQNAEYSVKVTFLELYNEEITDLLAPEEISKVSLEEKQKKQLPLMEDGKGGVLVRGLEEEIVTCASEIYTLLERGSSKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVNQKMMKSTLIKDLYGEIERLKSEVYATREKNGVYIPKERYYQEEIEKKAMADQIEQMGITIESYQKQLEDMRNKYDDQVRQCSDLSNKLDTTEKNLNKTSKVLASREEELKKCRYTVNEKEFIISEQRKAENALAHQACVLRADLEKALQDNASLFAKIGREDKLSSDNRAVVNNFQAELAQKVGSLCNTVTTSLSEQNGHLQGVEKLCHSFLGIHDKAAIDLKEKMKDLRAVYVSHIEAVQNVVRLHKASSDASLEELSSAISSHGHSIEEFLTTAATEAGSIFDELQSCLSTQHGELTLFAREVRNRFNLSVEQIKEISERSEELVEKLFEESKNLEEFVARADQMQTESIDDFKKAYEEQSKSESEKLIADMTSLISDHIRRQVHLVDSKLVDLRESGIKNKSFFDGHVSSVEDITTNAKRKWQSFCIQAEKDAKDTADYSAAKHCRMEVLLQQSVSTAHSAFGQVKRTHEAVNELGAKHIFATESLIRNACESHVQHVAEVNSARAAAEEDVAKNTDDFLQQFDATSAEERESVCSVVNVVKSHANTLEMFRENHSGQAASIEHRACETFQQNYMDYEPSGTTPVRCEPEVPSKGTIDSLRTLPIEALLEEFRENNSYESSSDVKELKPSLIPRSPLTQLN*