AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045710 MtrunA17_Chr1g0212891 99.341 1214 8 0 1 1214 1 1214 0.0 2492
Msa0045710 MtrunA17_Chr4g0064451 81.811 1226 145 11 1 1214 1 1160 0.0 2008
Msa0045710 MtrunA17_Chr4g0064641 87.300 1000 88 3 222 1214 133 1100 0.0 1796
Msa0045710 MtrunA17_Chr4g0064641 86.047 129 15 1 1 126 1 129 7.44e-62 231
Msa0045710 MtrunA17_Chr6g0453861 86.913 298 22 2 515 812 1 281 4.59e-175 517
Msa0045710 MtrunA17_Chr6g0453871 95.480 177 8 0 831 1007 1 177 7.24e-114 352
Msa0045710 MtrunA17_Chr6g0453881 97.419 155 4 0 1056 1210 22 176 1.12e-100 317
Msa0045710 MtrunA17_Chr8g0381071 23.127 1241 764 36 1 1209 3 1085 8.22e-67 246
Msa0045710 MtrunA17_Chr7g0268421 21.545 492 291 15 389 798 447 925 1.01e-21 102
Msa0045710 MtrunA17_Chr2g0291081 21.749 446 289 12 393 805 309 727 2.86e-17 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045710 AT3G55220.1 87.397 1214 153 0 1 1214 1 1214 0.0 2243
Msa0045710 AT3G55200.1 87.397 1214 153 0 1 1214 1 1214 0.0 2243
Msa0045710 AT3G55200.3 87.397 1214 153 0 1 1214 1 1214 0.0 2243
Msa0045710 AT3G55200.2 87.397 1214 153 0 1 1214 1 1214 0.0 2243
Msa0045710 AT4G21100.1 23.848 1237 759 35 1 1209 3 1084 5.87e-68 250
Msa0045710 AT4G05420.1 23.763 1233 759 36 4 1209 6 1084 2.20e-65 242
Msa0045710 AT4G05420.2 23.644 1235 737 37 4 1209 6 1063 4.45e-63 234
Msa0045710 AT3G11960.2 24.954 541 302 21 351 798 343 872 1.35e-23 108
Msa0045710 AT3G11960.4 24.954 541 302 21 351 798 401 930 1.53e-23 108
Msa0045710 AT3G11960.1 24.954 541 302 21 351 798 401 930 1.59e-23 108
Msa0045710 AT3G11960.3 24.954 541 302 21 351 798 401 930 1.59e-23 108

Find 366 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAATTTCTTCCACCTTAT+TGG 0.107277 1_1:-77643019 None:intergenic
CACCAATCAGGCTGCCTATT+TGG 0.116798 1_1:+77644174 Msa0045710:three_prime_UTR
TCTTGCTCTTAGTCAGTTTC+AGG 0.121560 1_1:+77642254 Msa0045710:CDS
GAGATACATGGTTTAGTTTA+TGG 0.132454 1_1:-77639400 None:intergenic
CCATGGTCTGTATCAGTTTA+AGG 0.147073 1_1:+77640466 Msa0045710:CDS
CACTTATCTGATTCAGCTTT+TGG 0.165187 1_1:-77641967 None:intergenic
GCTGCTCAAGCTGGGGAAAA+TGG 0.168763 1_1:+77641862 Msa0045710:CDS
GTTTATGGAAAACGAGAAAT+TGG 0.183165 1_1:-77639385 None:intergenic
CATGCTTTCTTCACTTTGTT+AGG 0.202085 1_1:-77643998 None:intergenic
GATACTCGATCCCGATTCTT+AGG 0.218899 1_1:+77641460 Msa0045710:CDS
AAAATTCATCAAGAGACTTT+TGG 0.219654 1_1:+77639711 Msa0045710:CDS
TTGTGATAGCAAAATAAAAT+AGG 0.227316 1_1:+77639268 Msa0045710:five_prime_UTR
CTGACCTTCATATCAGTAAT+TGG 0.227439 1_1:-77640623 None:intergenic
ACAGGTTGTATTTCCTGTTT+TGG 0.235680 1_1:-77642016 None:intergenic
GACATTCTATGAGCTTGATT+TGG 0.239393 1_1:+77640034 Msa0045710:CDS
TCCAGCAGTTAAACTCCTTT+TGG 0.249420 1_1:-77642154 None:intergenic
ACGCTTTCCTCTTACAATAA+TGG 0.255451 1_1:-77641506 None:intergenic
CGCTTTCCTCTTACAATAAT+GGG 0.256574 1_1:-77641505 None:intergenic
AGGAAATACAACCTGTCTTT+TGG 0.256892 1_1:+77642023 Msa0045710:CDS
TCCCTTTCGGTTTCTTTGAT+AGG 0.272046 1_1:+77640920 Msa0045710:CDS
TGTTCTCAGGCTATATGATT+TGG 0.274280 1_1:+77642302 Msa0045710:CDS
CATATGAAAGGGGTGTTAAA+AGG 0.275163 1_1:-77641585 None:intergenic
CAAACGGTATTAGGCATATC+AGG 0.275629 1_1:+77640969 Msa0045710:CDS
AATTTGCTTGTTACTGTTCC+TGG 0.282122 1_1:+77640107 Msa0045710:CDS
ACAATTTCTTCCACCTTATT+GGG 0.286302 1_1:-77643018 None:intergenic
TTTGCAATTGTCCTCTTTCC+AGG 0.290931 1_1:-77641022 None:intergenic
CTAGTAACTTAGTACTTCTT+TGG 0.294381 1_1:+77644139 Msa0045710:three_prime_UTR
GCGCTAGTCAAATGTTGATA+TGG 0.294873 1_1:+77643844 Msa0045710:three_prime_UTR
ACCAATCAGGCTGCCTATTT+GGG 0.299150 1_1:+77644175 Msa0045710:three_prime_UTR
GGAAGATTACTTGCAGGATT+AGG 0.309171 1_1:+77642276 Msa0045710:CDS
GAAAACGAGAAATTGGGATT+AGG 0.309803 1_1:-77639378 None:intergenic
CCCCTCTCTGATGAGCATTA+TGG 0.314592 1_1:+77641940 Msa0045710:CDS
TAGATTAGGTATACCTTAAC+AGG 0.323064 1_1:-77643267 None:intergenic
AAGTTCATCCAAACGGTATT+AGG 0.325887 1_1:+77640960 Msa0045710:CDS
TCAAGGAAAAGAAGCGATTC+TGG 0.327003 1_1:-77641313 None:intergenic
AAAACGAGAAATTGGGATTA+GGG 0.327083 1_1:-77639377 None:intergenic
CTTTGTCTGCCTTCAGGCAC+TGG 0.331981 1_1:-77641184 None:intergenic
ACATTCTATGAGCTTGATTT+GGG 0.332941 1_1:+77640035 Msa0045710:CDS
GTCTGGTGATGTTGCTTGTT+TGG 0.334942 1_1:+77641153 Msa0045710:CDS
GTATACCTTAACAGGAAAAT+AGG 0.337995 1_1:-77643259 None:intergenic
CTGGATTTATTCATATATAT+AGG 0.342989 1_1:+77642172 Msa0045710:CDS
GTCTAGAACCGTGGTGGATA+TGG 0.343885 1_1:+77641420 Msa0045710:CDS
CGGGATCTTTGTCTGCCTTC+AGG 0.344846 1_1:-77641190 None:intergenic
CACCACCAAAAGTTTCCGTT+TGG 0.349636 1_1:-77641773 None:intergenic
ATCAGGGGCATCCGGATGTT+AGG 0.353056 1_1:+77640189 Msa0045710:CDS
CGAGTACGGTGATATCTTTA+AGG 0.353137 1_1:+77640316 Msa0045710:CDS
TCAATGTGTGTGCTCAAGTC+GGG 0.354836 1_1:+77640413 Msa0045710:CDS
AGCAGGCAAATCAGCACGTC+TGG 0.360174 1_1:-77640222 None:intergenic
ATGGCAGGTGCGGACAAGTT+TGG 0.360544 1_1:+77642892 Msa0045710:CDS
CCTCCCCGCCATTCTCCATT+TGG 0.360562 1_1:-77641900 None:intergenic
ATCGTTGTCGGTTCCGATTC+CGG 0.363435 1_1:+77639642 Msa0045710:CDS
TTGTTTGCGGCGTCTGAGTT+TGG 0.365945 1_1:+77640440 Msa0045710:CDS
TGTATCAGTTTAAGGGAATA+GGG 0.366882 1_1:+77640474 Msa0045710:CDS
CCGGTATACCTAGTGCTGTT+TGG 0.366905 1_1:+77640765 Msa0045710:CDS
GTTCTCAGGCTATATGATTT+GGG 0.367050 1_1:+77642303 Msa0045710:CDS
CAATAATGGGAAACAGCTTC+GGG 0.367514 1_1:-77641492 None:intergenic
AAGACAAATAAATCCCAAAT+AGG 0.368963 1_1:-77644188 None:intergenic
TGAATTCGACCGTTGTCGTC+GGG 0.371104 1_1:-77639540 None:intergenic
CTGTTTCCCATTATTGTAAG+AGG 0.371337 1_1:+77641499 Msa0045710:CDS
TGTGATAGCAAAATAAAATA+GGG 0.375147 1_1:+77639269 Msa0045710:five_prime_UTR
CTGTATCAGTTTAAGGGAAT+AGG 0.375822 1_1:+77640473 Msa0045710:CDS
GCATCTGTTGGCGGTGAGGA+TGG 0.386597 1_1:+77641343 Msa0045710:CDS
ACAATAATGGGAAACAGCTT+CGG 0.388090 1_1:-77641493 None:intergenic
GAGGATCTTGAGAACAGGTT+TGG 0.390845 1_1:+77640712 Msa0045710:CDS
GGACACTACTCCCTCCCTTT+CGG 0.391896 1_1:+77640907 Msa0045710:CDS
TTTCAGGGAAGATTACTTGC+AGG 0.393367 1_1:+77642270 Msa0045710:CDS
GCCGGAGAAGTTGCCGTTGA+TGG 0.395817 1_1:-77639463 None:intergenic
GCAACCCAAACGGAAACTTT+TGG 0.398492 1_1:+77641768 Msa0045710:CDS
TTCAAGGGTTTCATATGAAA+GGG 0.399706 1_1:-77641596 None:intergenic
ATGCTTTCTTCACTTTGTTA+GGG 0.400330 1_1:-77643997 None:intergenic
CAGGATTAGGACCTGTTCTC+AGG 0.402109 1_1:+77642289 Msa0045710:CDS
GGAGAATGGCGGGGAGGATG+AGG 0.403218 1_1:+77641906 Msa0045710:CDS
ATTCTCTCTGTTGAAGTCTT+CGG 0.403266 1_1:+77639567 Msa0045710:CDS
CATGGTCTGTATCAGTTTAA+GGG 0.404009 1_1:+77640467 Msa0045710:CDS
CAACAGATGCTTGAACTTCA+AGG 0.404934 1_1:-77641330 None:intergenic
AGTTGGGTCGAATAGACTTC+AGG 0.406260 1_1:+77641045 Msa0045710:CDS
CAGAAGGATTTCATCGTTGT+CGG 0.407062 1_1:+77639630 Msa0045710:CDS
GCTGAATGGAGCTCCCAATA+AGG 0.407221 1_1:+77643005 Msa0045710:CDS
CAAAAGCTGAATCAGATAAG+TGG 0.407316 1_1:+77641968 Msa0045710:CDS
CGGCAACTTCTCCGGCGGTA+AGG 0.410147 1_1:+77639470 Msa0045710:CDS
CCCGTCTATACTTGCAGTAA+TGG 0.412306 1_1:-77642789 None:intergenic
CTGCTCAAGCTGGGGAAAAT+GGG 0.413867 1_1:+77641863 Msa0045710:CDS
TGGGAGGATCAAGTGGGAGC+AGG 0.415443 1_1:+77642978 Msa0045710:CDS
TGAATAGAGACAATTGTGTT+GGG 0.418831 1_1:-77642366 None:intergenic
GCAAACCAGCGTTCAGGAAA+AGG 0.418899 1_1:-77641384 None:intergenic
AGAATTCTTGATCCCAAAAC+AGG 0.420804 1_1:+77642003 Msa0045710:CDS
AAGAGGACAATTGCAAAAGT+TGG 0.422719 1_1:+77641028 Msa0045710:CDS
AATCATAACAGCTCTACCTT+TGG 0.426059 1_1:-77639784 None:intergenic
TTTATGGAAAACGAGAAATT+GGG 0.426367 1_1:-77639384 None:intergenic
TGCAGATCCATTGGTAATGT+TGG 0.427201 1_1:-77643563 None:intergenic
GATGAATTGGACAGGACCCC+TGG 0.427518 1_1:+77643599 Msa0045710:CDS
AGTTTCTTCAGTATTTCTCC+AGG 0.428293 1_1:-77643617 None:intergenic
ACACACATTGAAGAAGTAAC+AGG 0.429037 1_1:-77640401 None:intergenic
ACTGTTCCTGGTGGTGCTGA+TGG 0.430415 1_1:+77640119 Msa0045710:CDS
ATCATAACAGCTCTACCTTT+GGG 0.430670 1_1:-77639783 None:intergenic
GGATTACTCTGAGGCCGATC+AGG 0.437053 1_1:+77639971 Msa0045710:CDS
TTCGAGAAAGTGGTCTGATC+AGG 0.439223 1_1:+77640070 Msa0045710:CDS
TGTCCCTCAGTTCACCAATC+AGG 0.439637 1_1:+77644162 Msa0045710:three_prime_UTR
CTGATATGCCTAATACCGTT+TGG 0.441610 1_1:-77640968 None:intergenic
GTGGACCTCGATCTTCTTTG+AGG 0.444046 1_1:+77640693 Msa0045710:CDS
CTCATTTGGAGATGCATATG+AGG 0.446107 1_1:+77643187 Msa0045710:CDS
TCTTTGAGGATCTTGAGAAC+AGG 0.446199 1_1:+77640707 Msa0045710:CDS
AATAACAATCCTACCGGAAT+CGG 0.446658 1_1:-77639655 None:intergenic
CATCTGTTGGCGGTGAGGAT+GGG 0.447167 1_1:+77641344 Msa0045710:CDS
AAACCTTGTTAGGATTGATC+AGG 0.447236 1_1:+77640586 Msa0045710:CDS
GGGGTCTCAATCCTAAGAAT+CGG 0.447794 1_1:-77641471 None:intergenic
ACCACCAAAAGTTTCCGTTT+GGG 0.453593 1_1:-77641772 None:intergenic
GAAGGTGTAGTTGCTGTTGC+TGG 0.455667 1_1:+77641652 Msa0045710:CDS
ACTGTTAGTTTCATGCTTTG+TGG 0.455690 1_1:+77644283 Msa0045710:three_prime_UTR
TTTGTGTAGGATGTTATTGA+TGG 0.456962 1_1:+77643521 Msa0045710:intron
CAGGTTGTTATTGCTCTAAA+CGG 0.457990 1_1:+77641064 Msa0045710:CDS
AACCCTCTTCAGTTTCCATC+AGG 0.458606 1_1:-77640529 None:intergenic
ATGGCAGTTTCCAAGCTTCC+CGG 0.458775 1_1:+77640746 Msa0045710:CDS
ATTCAAGGGTTTCATATGAA+AGG 0.459170 1_1:-77641597 None:intergenic
ATGAGCCAACAGCAAGAAAA+CGG 0.459614 1_1:-77641210 None:intergenic
ATCTGTTGGCGGTGAGGATG+GGG 0.460428 1_1:+77641345 Msa0045710:CDS
TCTGCCTGTCAAGTCGCCCT+TGG 0.460463 1_1:+77641536 Msa0045710:CDS
TTCAATGTGTGTGCTCAAGT+CGG 0.460557 1_1:+77640412 Msa0045710:CDS
GATGCCAATTACTGATATGA+AGG 0.461235 1_1:+77640619 Msa0045710:CDS
TCAATTTGTGGTGTTGATTG+TGG 0.461499 1_1:+77639915 Msa0045710:CDS
TTCCTTCTGCAGACCGAGTA+CGG 0.463354 1_1:+77640302 Msa0045710:CDS
TCCCAAATAGGCAGCCTGAT+TGG 0.463657 1_1:-77644176 None:intergenic
GTCGGGGCGAAGGAGATCTA+AGG 0.464154 1_1:-77639523 None:intergenic
GTTGATGGCGCAGATGATTC+CGG 0.464267 1_1:-77639448 None:intergenic
CAAGCCAAGGGCGACTTGAC+AGG 0.464307 1_1:-77641540 None:intergenic
TTGAATAGAGACAATTGTGT+TGG 0.464403 1_1:-77642367 None:intergenic
GGTTGCCGGAGAATTGTTCC+AGG 0.465028 1_1:+77639741 Msa0045710:CDS
GCGTTCAGGAAAAGGCTAGC+AGG 0.465299 1_1:-77641376 None:intergenic
GACCGTTGTCGTCGGGGCGA+AGG 0.466064 1_1:-77639533 None:intergenic
TATGATGCGGTAAGCCATCT+TGG 0.466751 1_1:-77642850 None:intergenic
GCAGATCCATTGGTAATGTT+GGG 0.469512 1_1:-77643562 None:intergenic
TTAGCCGTTGGCACAGCAAA+GGG 0.471255 1_1:+77642117 Msa0045710:CDS
CTTGAAGTTCAAGCATCTGT+TGG 0.471375 1_1:+77641331 Msa0045710:CDS
GGAACAGTTATGGGAAGTAT+TGG 0.471836 1_1:+77643120 Msa0045710:CDS
GGAAAGCACAAGGGTGGCAT+TGG 0.472592 1_1:-77640843 None:intergenic
CATTCTGCAAACCAGCGTTC+AGG 0.472769 1_1:-77641390 None:intergenic
CTAGCTCAGTTTCGTCTCAC+TGG 0.473732 1_1:+77639603 Msa0045710:CDS
GACAGAAAGTGCAGACCAAA+TGG 0.475375 1_1:+77641885 Msa0045710:CDS
CTGAACGCTGGTTTGCAGAA+TGG 0.476157 1_1:+77641391 Msa0045710:CDS
GCCACCCTTGTGCTTTCCAT+TGG 0.476366 1_1:+77640848 Msa0045710:CDS
CAGGATCCAGTGATAAGATT+CGG 0.476586 1_1:-77641246 None:intergenic
CTTAAAGATATCACCGTACT+CGG 0.477254 1_1:-77640315 None:intergenic
CTTGCTCTTAGTCAGTTTCA+GGG 0.477422 1_1:+77642255 Msa0045710:CDS
TCAGGGGCATCCGGATGTTA+GGG 0.477535 1_1:+77640190 Msa0045710:CDS
CTTCACTTTGTTAGGGAGCA+AGG 0.477697 1_1:-77643990 None:intergenic
ATATAAGAATCAGGGGCATC+CGG 0.480286 1_1:+77640181 Msa0045710:CDS
GGAGGATCAAGTGGGAGCAG+GGG 0.480502 1_1:+77642980 Msa0045710:CDS
ATTAATGAGTGGAGAACTCC+TGG 0.480530 1_1:+77641004 Msa0045710:CDS
CTGTCAAGTCGCCCTTGGCT+TGG 0.480711 1_1:+77641541 Msa0045710:CDS
CCAAACAGCACTAGGTATAC+CGG 0.481385 1_1:-77640765 None:intergenic
GGTTGCAGCACAAATTTCCT+AGG 0.481964 1_1:-77641751 None:intergenic
GGATGTAACTGGTCAATTGA+TGG 0.484938 1_1:+77641111 Msa0045710:CDS
TGGTCTGATCAGGTTGATAA+TGG 0.487293 1_1:+77640080 Msa0045710:CDS
TTGAATTCGACCGTTGTCGT+CGG 0.489073 1_1:-77639541 None:intergenic
GGGAGGATCAAGTGGGAGCA+GGG 0.490579 1_1:+77642979 Msa0045710:CDS
AGAGTCTGCATACAATCATC+AGG 0.492699 1_1:-77641265 None:intergenic
GCCATCAACGGCAACTTCTC+CGG 0.492815 1_1:+77639462 Msa0045710:CDS
GGCAACTTCTCCGGCGGTAA+GGG 0.493570 1_1:+77639471 Msa0045710:CDS
CATGGGGTTTCTCATTCATA+CGG 0.493766 1_1:+77644017 Msa0045710:three_prime_UTR
TTTGGAGCTTCAGGATAATG+AGG 0.498161 1_1:+77642041 Msa0045710:CDS
TGGGAGCAGGGGAAGCTGAA+TGG 0.498168 1_1:+77642991 Msa0045710:CDS
AAAATGAGGCAGCAAATTCA+AGG 0.500144 1_1:-77641612 None:intergenic
AAACTTGTCCGCACCTGCCA+TGG 0.500572 1_1:-77642890 None:intergenic
CAACCTGATCAATCCTAACA+AGG 0.500777 1_1:-77640589 None:intergenic
TCCATTACTGCAAGTATAGA+CGG 0.500792 1_1:+77642788 Msa0045710:CDS
GGGATCAAGAATTCTGATGC+AGG 0.502138 1_1:-77641995 None:intergenic
TGAGCCAACAGCAAGAAAAC+GGG 0.503097 1_1:-77641209 None:intergenic
CAAGTCGGGGTTCTTGTTTG+CGG 0.503296 1_1:+77640427 Msa0045710:CDS
TCGTCTCACTGGTGCTCAGA+AGG 0.503300 1_1:+77639614 Msa0045710:CDS
CAGACCAAATGGAGAATGGC+GGG 0.503511 1_1:+77641896 Msa0045710:CDS
GAAGACTTCAACAGAGAGAA+TGG 0.503853 1_1:-77639565 None:intergenic
AAATCATATAGCCTGAGAAC+AGG 0.504962 1_1:-77642300 None:intergenic
TTTGTGTGGAAGAGATCATA+TGG 0.505435 1_1:+77643224 Msa0045710:CDS
TTAACCATGTTTCGAGAAAG+TGG 0.508168 1_1:+77640060 Msa0045710:CDS
GGGTCTCAATCCTAAGAATC+GGG 0.509484 1_1:-77641470 None:intergenic
GACTGCAATTTACGCCCAAA+AGG 0.509891 1_1:+77642139 Msa0045710:CDS
AGTGAGATTGTAGAGATACA+TGG 0.511454 1_1:-77639412 None:intergenic
GCCTCTCTTATACCAGGTGG+TGG 0.511589 1_1:+77643081 Msa0045710:CDS
AAAGGTAGAGCTGTTATGAT+TGG 0.514655 1_1:+77639786 Msa0045710:CDS
TTTGTTATATATAAGAATCA+GGG 0.515912 1_1:+77640173 Msa0045710:CDS
CATCAGCAAATATGTAGAGT+TGG 0.516125 1_1:-77642819 None:intergenic
CGTTGGAACATGAGGGTGAT+CGG 0.516194 1_1:+77640342 Msa0045710:CDS
CGATCAGGATTCGACTGGTA+TGG 0.520010 1_1:+77639986 Msa0045710:CDS
CAGACCACTTTCTCGAAACA+TGG 0.520109 1_1:-77640064 None:intergenic
CTTCACTGTGACTGTGTGAG+TGG 0.522266 1_1:-77639318 None:intergenic
GTTTCTTCAGTATTTCTCCA+GGG 0.524708 1_1:-77643616 None:intergenic
GAGTTCTCCACTCATTAATA+CGG 0.525159 1_1:-77641000 None:intergenic
AGAGGACAATTGCAAAAGTT+GGG 0.526698 1_1:+77641029 Msa0045710:CDS
CAGTGAGACGAAACTGAGCT+AGG 0.527611 1_1:-77639602 None:intergenic
CTTCACAAAACTCAGGTTGA+AGG 0.527835 1_1:+77642225 Msa0045710:CDS
TTTGGAGATGCATATGAGGC+AGG 0.529151 1_1:+77643191 Msa0045710:CDS
TGTGATCTCATGCCTGCAAA+AGG 0.529541 1_1:+77643059 Msa0045710:CDS
ACTAGGTATACCGGGAAGCT+TGG 0.532377 1_1:-77640756 None:intergenic
ATCAAGAATAACAATCCTAC+CGG 0.532496 1_1:-77639661 None:intergenic
CTCATGCAAGTTCATCCAAA+CGG 0.533265 1_1:+77640953 Msa0045710:CDS
ATCCTGAAGCTCCAAAAGAC+AGG 0.533653 1_1:-77642034 None:intergenic
TGTGACTGTGTGAGTGGAGC+GGG 0.534051 1_1:-77639312 None:intergenic
TTAAGAAATGATCATTAGAG+AGG 0.534715 1_1:+77643664 Msa0045710:exon
CCCAAAAGGAGTTTAACTGC+TGG 0.535933 1_1:+77642153 Msa0045710:CDS
CCATTACTGCAAGTATAGAC+GGG 0.536221 1_1:+77642789 Msa0045710:CDS
TGCTGCTATGCATAAACTGA+AGG 0.538015 1_1:+77640268 Msa0045710:CDS
ACTCACCTGGAACAATTCTC+CGG 0.538585 1_1:-77639746 None:intergenic
GAAGTTCAAGCATCTGTTGG+CGG 0.538634 1_1:+77641334 Msa0045710:CDS
TGTTACTTGAGTAAGCCGTT+TGG 0.539518 1_1:+77643967 Msa0045710:three_prime_UTR
GTGTTAAAAGGAAGTGTCCT+TGG 0.539650 1_1:-77641573 None:intergenic
CTGATGATTGCGTTCCAAGA+TGG 0.539804 1_1:+77642836 Msa0045710:CDS
GGAATCACAGCCCTAACATC+CGG 0.542691 1_1:-77640200 None:intergenic
TATCCACCACGGTTCTAGAC+AGG 0.542736 1_1:-77641417 None:intergenic
TAAGGCTACGTTGGAACATG+AGG 0.542754 1_1:+77640334 Msa0045710:CDS
ATATATAGGTTTCTAGAGGA+TGG 0.542765 1_1:+77642186 Msa0045710:CDS
TTTAGCCGTTGGCACAGCAA+AGG 0.542918 1_1:+77642116 Msa0045710:CDS
CAAAAGGCCTCTCTTATACC+AGG 0.543076 1_1:+77643075 Msa0045710:CDS
GACAATCCGAATCTTATCAC+TGG 0.544039 1_1:+77641240 Msa0045710:CDS
ACCATAATGCTCATCAGAGA+GGG 0.544734 1_1:-77641941 None:intergenic
GTGGAGAAGCATGAAATGTC+TGG 0.546011 1_1:+77641136 Msa0045710:CDS
TGTTAGGGAGCAAGGCCAAA+CGG 0.546455 1_1:-77643982 None:intergenic
CTCACTCTTCAACGACCCAC+CGG 0.547556 1_1:+77639429 Msa0045710:CDS
TTTCTTCAGTATTTCTCCAG+GGG 0.548741 1_1:-77643615 None:intergenic
GACATTGCTCCAGTGCCTGA+AGG 0.549279 1_1:+77641175 Msa0045710:CDS
TTCCATCAGGCTCGCAGACG+AGG 0.554048 1_1:-77640516 None:intergenic
GAAATTGTACAATTTCATGT+TGG 0.555672 1_1:+77643033 Msa0045710:CDS
TTTGTGCAGGTGTTGGCGAA+AGG 0.556137 1_1:+77643939 Msa0045710:intron
GGCCTCGTCTGCGAGCCTGA+TGG 0.558067 1_1:+77640514 Msa0045710:CDS
ACCGTGGTGGATATGGTCAC+AGG 0.558712 1_1:+77641427 Msa0045710:CDS
GAGATAGAAGAGGATCCTAC+TGG 0.558794 1_1:+77642955 Msa0045710:CDS
TTGTTATTGCTCTAAACGGA+GGG 0.559271 1_1:+77641068 Msa0045710:CDS
AGTGGAGAACTCCTGGAAAG+AGG 0.561736 1_1:+77641011 Msa0045710:CDS
GTGGTGATTGAGAGTGATCA+AGG 0.562419 1_1:+77641790 Msa0045710:CDS
GAATAGAGACAATTGTGTTG+GGG 0.562664 1_1:-77642365 None:intergenic
TACCGTGATCGAATTTATGT+TGG 0.567908 1_1:+77642393 Msa0045710:CDS
CAGTCCCTTTGCTGTGCCAA+CGG 0.568057 1_1:-77642121 None:intergenic
ACCTATCAAAGAAACCGAAA+GGG 0.568715 1_1:-77640921 None:intergenic
CAGAAGAGCGTGAAGCTGCA+AGG 0.569941 1_1:+77641824 Msa0045710:CDS
CACCTATCAAAGAAACCGAA+AGG 0.569957 1_1:-77640922 None:intergenic
TGAAACTGACTAAGAGCAAG+AGG 0.570088 1_1:-77642252 None:intergenic
TTCCTAGGCGTGTATCTAAG+TGG 0.571777 1_1:-77641736 None:intergenic
AATTTGTGCTGCAACCCAAA+CGG 0.572113 1_1:+77641758 Msa0045710:CDS
CACCGTACTCGGTCTGCAGA+AGG 0.573412 1_1:-77640304 None:intergenic
AAATTGCTGATGAATTGGAC+AGG 0.573426 1_1:+77643591 Msa0045710:CDS
AACTGGTCAATTGATGGAGG+TGG 0.575888 1_1:+77641117 Msa0045710:CDS
CTAACAAAGTGAAGAAAGCA+TGG 0.576307 1_1:+77643999 Msa0045710:three_prime_UTR
GATGATTGTATGCAGACTCT+AGG 0.576719 1_1:+77641268 Msa0045710:CDS
CGTTCAGGAAAAGGCTAGCA+GGG 0.576888 1_1:-77641375 None:intergenic
CAGCCTGATTGGTGAACTGA+GGG 0.578746 1_1:-77644165 None:intergenic
AGGTTTGGCTGTCAGTGAGA+TGG 0.579043 1_1:+77640727 Msa0045710:CDS
ATAAGAACACCACGCTCAGC+AGG 0.579277 1_1:-77640239 None:intergenic
TGAACTACTTCACAAAACTC+AGG 0.579866 1_1:+77642218 Msa0045710:CDS
AAGTGGAGTTCTTGTTTGTG+CGG 0.581572 1_1:+77640145 Msa0045710:CDS
AGAAATACTGAAGAAACTTG+AGG 0.583807 1_1:+77643622 Msa0045710:CDS
TTCTTCGACTGTCTCACCAA+TGG 0.584841 1_1:-77640864 None:intergenic
GCAGGCAAATCAGCACGTCT+GGG 0.586042 1_1:-77640221 None:intergenic
ATGGGGTTTCTCATTCATAC+GGG 0.586235 1_1:+77644018 Msa0045710:three_prime_UTR
AGTGCAGACCAAATGGAGAA+TGG 0.586246 1_1:+77641892 Msa0045710:CDS
TGATATCTTTAAGGCTACGT+TGG 0.586642 1_1:+77640325 Msa0045710:CDS
AAAAGCTGAATCAGATAAGT+GGG 0.587805 1_1:+77641969 Msa0045710:CDS
TTCACAGTCCAAACAGCACT+AGG 0.590414 1_1:-77640773 None:intergenic
CTATGCATAAACTGAAGGGT+GGG 0.590795 1_1:+77640273 Msa0045710:CDS
CTTGGTCCATCAGCACCACC+AGG 0.590970 1_1:-77640125 None:intergenic
GAGCCTGATGGAAACTGAAG+AGG 0.592145 1_1:+77640526 Msa0045710:CDS
GCTGATTTGCCTGCTGAGCG+TGG 0.592203 1_1:+77640230 Msa0045710:CDS
ATTAGGCATATCAGGGAGGA+TGG 0.594759 1_1:+77640977 Msa0045710:CDS
GAGGCCGATCAGGATTCGAC+TGG 0.595755 1_1:+77639981 Msa0045710:CDS
TTGTGTAGGATGTTATTGAT+GGG 0.596283 1_1:+77643522 Msa0045710:intron
TGGTGAATGTAACCAAGCCA+AGG 0.597932 1_1:-77641553 None:intergenic
AACATAAATTCGATCACGGT+AGG 0.599144 1_1:-77642391 None:intergenic
TGTAGTTGCTGTTGCTGGTG+AGG 0.599449 1_1:+77641657 Msa0045710:CDS
GGTTTCTCATTCATACGGGA+AGG 0.600563 1_1:+77644022 Msa0045710:three_prime_UTR
TCATATATATAGGTTTCTAG+AGG 0.601291 1_1:+77642182 Msa0045710:CDS
GAATTCGACCGTTGTCGTCG+GGG 0.601670 1_1:-77639539 None:intergenic
TGAATAGAGATACTGCTGCT+AGG 0.602594 1_1:+77639841 Msa0045710:CDS
GTCGAAGAAGTCAGTGACAG+TGG 0.603224 1_1:+77640878 Msa0045710:CDS
TTGTCGGTTCCGATTCCGGT+AGG 0.603626 1_1:+77639646 Msa0045710:CDS
CTACTGGTGGGAGGATCAAG+TGG 0.603845 1_1:+77642971 Msa0045710:CDS
AAGGCTACGTTGGAACATGA+GGG 0.604063 1_1:+77640335 Msa0045710:CDS
TCATCTGACCAATGTGTGGA+AGG 0.604252 1_1:+77641634 Msa0045710:CDS
TAACAAAGTGAAGAAAGCAT+GGG 0.604497 1_1:+77644000 Msa0045710:three_prime_UTR
GGAATCATCTGCGCCATCAA+CGG 0.605191 1_1:+77639450 Msa0045710:CDS
CCTTAAACTGATACAGACCA+TGG 0.608246 1_1:-77640466 None:intergenic
CAAACAGCACTAGGTATACC+GGG 0.608706 1_1:-77640764 None:intergenic
TTGTTATATATAAGAATCAG+GGG 0.609507 1_1:+77640174 Msa0045710:CDS
TTCTCATTCATACGGGAAGG+CGG 0.611144 1_1:+77644025 Msa0045710:three_prime_UTR
TTGCTTGTTACTGTTCCTGG+TGG 0.611338 1_1:+77640110 Msa0045710:CDS
CAATGTGTGTGCTCAAGTCG+GGG 0.611721 1_1:+77640414 Msa0045710:CDS
TCAAGGGTTTCATATGAAAG+GGG 0.612132 1_1:-77641595 None:intergenic
CTCCTTCGCCCCGACGACAA+CGG 0.612862 1_1:+77639531 Msa0045710:CDS
TTATGTTGGTGACATTCAAG+AGG 0.615248 1_1:+77642407 Msa0045710:CDS
GCAATTCCCAACATTACCAA+TGG 0.615421 1_1:+77643556 Msa0045710:CDS
AAAATGCACTCTCCACCACC+TGG 0.615658 1_1:-77643093 None:intergenic
GCGTCTGAGTTTGGAAACCA+TGG 0.616506 1_1:+77640449 Msa0045710:CDS
TGTGATTTATGAGCTTCTAA+CGG 0.616598 1_1:-77639879 None:intergenic
CAAGAAATCGTCGTCGCCAG+AGG 0.617225 1_1:+77639495 Msa0045710:CDS
ACATTGGTCAGATGAAAATG+AGG 0.617656 1_1:-77641626 None:intergenic
GGTCAGCAATCTGTTTGAAG+AGG 0.618125 1_1:+77640640 Msa0045710:CDS
CAGGATAATCCACCTTTGTG+TGG 0.618306 1_1:+77643210 Msa0045710:CDS
AATAGGGGATGATGATGATG+TGG 0.618832 1_1:+77640490 Msa0045710:CDS
CAACTACACCTTCCACACAT+TGG 0.622894 1_1:-77641642 None:intergenic
GTATCAGTTTAAGGGAATAG+GGG 0.623605 1_1:+77640475 Msa0045710:CDS
TATCAAAGAAACCGAAAGGG+AGG 0.624663 1_1:-77640918 None:intergenic
TGTGTAGGATGTTATTGATG+GGG 0.626687 1_1:+77643523 Msa0045710:intron
TGATCTCTTCCACACAAAGG+TGG 0.626831 1_1:-77643219 None:intergenic
TCTACAGCAATATACTCACC+TGG 0.627025 1_1:-77639759 None:intergenic
TCTCACCAATGGAAAGCACA+AGG 0.627318 1_1:-77640853 None:intergenic
AAATGAGGCAGCAAATTCAA+GGG 0.628031 1_1:-77641611 None:intergenic
ACCAATGGAAAGCACAAGGG+TGG 0.628099 1_1:-77640849 None:intergenic
TCAAGCATCTGTTGGCGGTG+AGG 0.629370 1_1:+77641339 Msa0045710:CDS
ATAGAAGAGGATCCTACTGG+TGG 0.629808 1_1:+77642958 Msa0045710:CDS
GAATGGAGCTCCCAATAAGG+TGG 0.630059 1_1:+77643008 Msa0045710:CDS
AGTGAGACGAAACTGAGCTA+GGG 0.632341 1_1:-77639601 None:intergenic
AAGAAGTACTAAGTTACTAG+AGG 0.632636 1_1:-77644136 None:intergenic
CATACCAGTCGAATCCTGAT+CGG 0.633405 1_1:-77639985 None:intergenic
AAACGGTATTAGGCATATCA+GGG 0.636543 1_1:+77640970 Msa0045710:CDS
GATGGCGCAGATGATTCCGG+TGG 0.636811 1_1:-77639445 None:intergenic
CACCAACATAAATTCGATCA+CGG 0.637531 1_1:-77642395 None:intergenic
TGTATCTGATGAGATAGAAG+AGG 0.638499 1_1:+77642945 Msa0045710:CDS
ATCTCATCAGATACATCCTG+CGG 0.640738 1_1:-77642937 None:intergenic
CACTTGATCCTCCCACCAGT+AGG 0.641173 1_1:-77642970 None:intergenic
TACTGGTGGGAGGATCAAGT+GGG 0.642790 1_1:+77642972 Msa0045710:CDS
ATCAAAGAAACCGAAAGGGA+GGG 0.644655 1_1:-77640917 None:intergenic
TCGAAGAAGTCAGTGACAGT+GGG 0.645296 1_1:+77640879 Msa0045710:CDS
AGCCTGATGGAAACTGAAGA+GGG 0.645359 1_1:+77640527 Msa0045710:CDS
GCAGACCAAATGGAGAATGG+CGG 0.650077 1_1:+77641895 Msa0045710:CDS
TGTTATTGCTCTAAACGGAG+GGG 0.650865 1_1:+77641069 Msa0045710:CDS
GCACAAACAAGAACTCCACT+TGG 0.651009 1_1:-77640143 None:intergenic
AGACCAAATGGAGAATGGCG+GGG 0.652748 1_1:+77641897 Msa0045710:CDS
GGTGAATGTAACCAAGCCAA+GGG 0.653180 1_1:-77641552 None:intergenic
TAGAAGAGGATCCTACTGGT+GGG 0.654087 1_1:+77642959 Msa0045710:CDS
CATTGAAGAAGTAACAGGAA+TGG 0.657283 1_1:-77640396 None:intergenic
TATTGAGTTGGATTACTCTG+AGG 0.657484 1_1:+77639962 Msa0045710:CDS
GCTATGCATAAACTGAAGGG+TGG 0.658331 1_1:+77640272 Msa0045710:CDS
TACCTTAACAGGAAAATAGG+CGG 0.658889 1_1:-77643256 None:intergenic
AAGAGGATCCTACTGGTGGG+AGG 0.659185 1_1:+77642962 Msa0045710:CDS
CTGTGACTGTGTGAGTGGAG+CGG 0.659673 1_1:-77639313 None:intergenic
ATAATGGGAAACAGCTTCGG+GGG 0.660763 1_1:-77641490 None:intergenic
ATGTTGGGAATTGCTCACAT+AGG 0.661639 1_1:-77643547 None:intergenic
TATATTGCTGTAGATCCCAA+AGG 0.662200 1_1:+77639768 Msa0045710:CDS
GCTGCTATGCATAAACTGAA+GGG 0.662832 1_1:+77640269 Msa0045710:CDS
ATGGCGCAGATGATTCCGGT+GGG 0.663771 1_1:-77639444 None:intergenic
TCCACCACCTGGTATAAGAG+AGG 0.664259 1_1:-77643082 None:intergenic
GCAGCCTGATTGGTGAACTG+AGG 0.664886 1_1:-77644166 None:intergenic
AACCATAATGCTCATCAGAG+AGG 0.666934 1_1:-77641942 None:intergenic
GTTGTTATTGCTCTAAACGG+AGG 0.667721 1_1:+77641067 Msa0045710:CDS
AGGATGGCCGTATTAATGAG+TGG 0.667784 1_1:+77640993 Msa0045710:CDS
GGTGGTGCTGATGGACCAAG+TGG 0.668564 1_1:+77640128 Msa0045710:CDS
ATCAACGGCAACTTCTCCGG+CGG 0.669744 1_1:+77639465 Msa0045710:CDS
TGGTGTCCTGTCTAGAACCG+TGG 0.672484 1_1:+77641411 Msa0045710:CDS
CCAAATGGAGAATGGCGGGG+AGG 0.674504 1_1:+77641900 Msa0045710:CDS
GATTTCTTGACCCTTACCGC+CGG 0.674914 1_1:-77639481 None:intergenic
AGGGGATGATGATGATGTGG+AGG 0.675506 1_1:+77640493 Msa0045710:CDS
TTCCACTTAGATACACGCCT+AGG 0.676656 1_1:+77641734 Msa0045710:CDS
AATAATGGGAAACAGCTTCG+GGG 0.677979 1_1:-77641491 None:intergenic
TGGCTTGGTTACATTCACCA+AGG 0.678729 1_1:+77641556 Msa0045710:CDS
CCATAATGCTCATCAGAGAG+GGG 0.680931 1_1:-77641940 None:intergenic
CCATGGTGTCAAAATCTATG+TGG 0.684812 1_1:-77642873 None:intergenic
CATAATGCTCATCAGAGAGG+GGG 0.685007 1_1:-77641939 None:intergenic
AACAAAGTGAAGAAAGCATG+GGG 0.689891 1_1:+77644001 Msa0045710:three_prime_UTR
CTCACCAATGGAAAGCACAA+GGG 0.694771 1_1:-77640852 None:intergenic
AAGATCCTCAAAGAAGATCG+AGG 0.696463 1_1:-77640698 None:intergenic
ACCTGTGACCATATCCACCA+CGG 0.703407 1_1:-77641428 None:intergenic
ATATGATCTCTTCCACACAA+AGG 0.705374 1_1:-77643222 None:intergenic
GTGGAGCGGGAACAATGCGG+AGG 0.707179 1_1:-77639299 None:intergenic
AAGGCCTCTCTTATACCAGG+TGG 0.708767 1_1:+77643078 Msa0045710:CDS
TGTCCTGTCTAGAACCGTGG+TGG 0.721061 1_1:+77641414 Msa0045710:CDS
AAAATCTATGTGGTATGATG+CGG 0.724478 1_1:-77642863 None:intergenic
TGTAACTGGTCAATTGATGG+AGG 0.727200 1_1:+77641114 Msa0045710:CDS
CGGTATTAGGCATATCAGGG+AGG 0.747835 1_1:+77640973 Msa0045710:CDS
TGAGTGGAGCGGGAACAATG+CGG 0.848433 1_1:-77639302 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTATATATAAGAATC+AGG + chr1_1:77640172-77640191 Msa0045710:CDS 15.0%
!!! TTTGTTATATATAAGAATCA+GGG + chr1_1:77640173-77640192 Msa0045710:CDS 15.0%
!!! ATTTTTACTATTGAAAGATT+AGG + chr1_1:77641688-77641707 Msa0045710:CDS 15.0%
!!! AATTTTCATGATAAAGAATA+CGG + chr1_1:77642087-77642106 Msa0045710:CDS 15.0%
!! GAAAATACAATAAATTACAA+CGG - chr1_1:77642500-77642519 None:intergenic 15.0%
!!! ATATTTGAATTTTACTAAAC+TGG + chr1_1:77642581-77642600 Msa0045710:intron 15.0%
!!! AAATAGAACTTTCTTAATTT+TGG + chr1_1:77642663-77642682 Msa0045710:intron 15.0%
!! CAAAAAATTAATACTATCTA+TGG - chr1_1:77643482-77643501 None:intergenic 15.0%
!!! AGTATTAATTTTTTGACAAA+CGG + chr1_1:77643487-77643506 Msa0045710:intron 15.0%
!! CTAAAAATAAAGTCATAAAT+GGG - chr1_1:77644068-77644087 None:intergenic 15.0%
!! TCTAAAAATAAAGTCATAAA+TGG - chr1_1:77644069-77644088 None:intergenic 15.0%
!! TTGTGATAGCAAAATAAAAT+AGG + chr1_1:77639268-77639287 Msa0045710:five_prime_UTR 20.0%
!! TGTGATAGCAAAATAAAATA+GGG + chr1_1:77639269-77639288 Msa0045710:five_prime_UTR 20.0%
!! TTGTTATATATAAGAATCAG+GGG + chr1_1:77640174-77640193 Msa0045710:CDS 20.0%
!! CTGGATTTATTCATATATAT+AGG + chr1_1:77642172-77642191 Msa0045710:CDS 20.0%
!!! GTTTCTTTAATATTTGAGTT+AGG + chr1_1:77642456-77642475 Msa0045710:intron 20.0%
!! AAATTCAAATATTAACACTC+TGG - chr1_1:77642573-77642592 None:intergenic 20.0%
!!! ATATTTTTGAAACTTGACTA+AGG + chr1_1:77642635-77642654 Msa0045710:intron 20.0%
!!! ATTTTATATGGAACAGTTAT+GGG + chr1_1:77643111-77643130 Msa0045710:CDS 20.0%
!! ATAATAACAGAAAGAATCAA+TGG - chr1_1:77643300-77643319 None:intergenic 20.0%
! TTTATGGAAAACGAGAAATT+GGG - chr1_1:77639387-77639406 None:intergenic 25.0%
!! AAAATTCATCAAGAGACTTT+TGG + chr1_1:77639711-77639730 Msa0045710:CDS 25.0%
!! AAATTCATCAAGAGACTTTT+GGG + chr1_1:77639712-77639731 Msa0045710:CDS 25.0%
!! TCATATATATAGGTTTCTAG+AGG + chr1_1:77642182-77642201 Msa0045710:CDS 25.0%
!! TATATGATTTGGGAAAAAGA+CGG + chr1_1:77642313-77642332 Msa0045710:CDS 25.0%
! AAATATAAAACAATCCCTTC+TGG - chr1_1:77642621-77642640 None:intergenic 25.0%
!! TTGGAAATATCTATTTTGTG+CGG + chr1_1:77642911-77642930 Msa0045710:CDS 25.0%
! GAAATTGTACAATTTCATGT+TGG + chr1_1:77643033-77643052 Msa0045710:CDS 25.0%
!! CATTTTATATGGAACAGTTA+TGG + chr1_1:77643110-77643129 Msa0045710:CDS 25.0%
!!! TGTTGATTTCTTTTCTCATT+TGG + chr1_1:77643173-77643192 Msa0045710:CDS 25.0%
! TCAATGGCATAATATAGATT+AGG - chr1_1:77643284-77643303 None:intergenic 25.0%
! TTAAGAAATGATCATTAGAG+AGG + chr1_1:77643664-77643683 Msa0045710:exon 25.0%
! ATAGTACTGTTATGATTGAT+AGG + chr1_1:77643726-77643745 Msa0045710:intron 25.0%
!!! AACAGATCATTTTTGAACAA+GGG + chr1_1:77643812-77643831 Msa0045710:three_prime_UTR 25.0%
! ATTCGTCAAATCAAAATTCT+CGG - chr1_1:77643896-77643915 None:intergenic 25.0%
!!! TTTTTAGAGACAAATGTTAC+TGG + chr1_1:77644081-77644100 Msa0045710:three_prime_UTR 25.0%
! AAGACAAATAAATCCCAAAT+AGG - chr1_1:77644191-77644210 None:intergenic 25.0%
! AAATTGGGATTAGGGTTTTA+GGG - chr1_1:77639372-77639391 None:intergenic 30.0%
AAAACGAGAAATTGGGATTA+GGG - chr1_1:77639380-77639399 None:intergenic 30.0%
GTTTATGGAAAACGAGAAAT+TGG - chr1_1:77639388-77639407 None:intergenic 30.0%
! GAGATACATGGTTTAGTTTA+TGG - chr1_1:77639403-77639422 None:intergenic 30.0%
ATCAAGAATAACAATCCTAC+CGG - chr1_1:77639664-77639683 None:intergenic 30.0%
TGTGATTTATGAGCTTCTAA+CGG - chr1_1:77639882-77639901 None:intergenic 30.0%
! ACTCTTGTGTTTTCAATTTG+TGG + chr1_1:77639903-77639922 Msa0045710:CDS 30.0%
AACTCAATAGCAGCAAAAAT+AGG - chr1_1:77639951-77639970 None:intergenic 30.0%
!! TATTTTTGCTGCTATTGAGT+TGG + chr1_1:77639950-77639969 Msa0045710:CDS 30.0%
ACATTCTATGAGCTTGATTT+GGG + chr1_1:77640035-77640054 Msa0045710:CDS 30.0%
TGTATCAGTTTAAGGGAATA+GGG + chr1_1:77640474-77640493 Msa0045710:CDS 30.0%
CCACAAAGAGTAAAAATTTG+AGG - chr1_1:77640671-77640690 None:intergenic 30.0%
! CCTCAAATTTTTACTCTTTG+TGG + chr1_1:77640668-77640687 Msa0045710:CDS 30.0%
!! GGAGCTTATATATTTTGAAG+TGG + chr1_1:77641090-77641109 Msa0045710:CDS 30.0%
!!! TATTTTGAAGTGGATGTAAC+TGG + chr1_1:77641100-77641119 Msa0045710:CDS 30.0%
TTCAAGGGTTTCATATGAAA+GGG - chr1_1:77641599-77641618 None:intergenic 30.0%
ATTCAAGGGTTTCATATGAA+AGG - chr1_1:77641600-77641619 None:intergenic 30.0%
AAAAGCTGAATCAGATAAGT+GGG + chr1_1:77641969-77641988 Msa0045710:CDS 30.0%
! ATATATAGGTTTCTAGAGGA+TGG + chr1_1:77642186-77642205 Msa0045710:CDS 30.0%
TGAATAGAGACAATTGTGTT+GGG - chr1_1:77642369-77642388 None:intergenic 30.0%
TTGAATAGAGACAATTGTGT+TGG - chr1_1:77642370-77642389 None:intergenic 30.0%
! TTTTTATTAGAGCTCCAGAA+GGG + chr1_1:77642604-77642623 Msa0045710:intron 30.0%
AAAATCTATGTGGTATGATG+CGG - chr1_1:77642866-77642885 None:intergenic 30.0%
ACAATTTCTTCCACCTTATT+GGG - chr1_1:77643021-77643040 None:intergenic 30.0%
TACAATTTCTTCCACCTTAT+TGG - chr1_1:77643022-77643041 None:intergenic 30.0%
GTATACCTTAACAGGAAAAT+AGG - chr1_1:77643262-77643281 None:intergenic 30.0%
TAGATTAGGTATACCTTAAC+AGG - chr1_1:77643270-77643289 None:intergenic 30.0%
CCATCAAGGAAAATATAACA+GGG - chr1_1:77643372-77643391 None:intergenic 30.0%
! CCTGTTATATTTTCCTTGAT+GGG + chr1_1:77643370-77643389 Msa0045710:intron 30.0%
AATGAACAACACGAAATGTA+TGG - chr1_1:77643445-77643464 None:intergenic 30.0%
! TACATTTCGTGTTGTTCATT+TGG + chr1_1:77643445-77643464 Msa0045710:intron 30.0%
GGAGTTCTATATATTTGTGT+AGG + chr1_1:77643508-77643527 Msa0045710:intron 30.0%
TTTGTGTAGGATGTTATTGA+TGG + chr1_1:77643521-77643540 Msa0045710:intron 30.0%
TTGTGTAGGATGTTATTGAT+GGG + chr1_1:77643522-77643541 Msa0045710:intron 30.0%
GAGAAAAATTGCTGATGAAT+TGG + chr1_1:77643586-77643605 Msa0045710:CDS 30.0%
AGAAATACTGAAGAAACTTG+AGG + chr1_1:77643622-77643641 Msa0045710:CDS 30.0%
CTTGTTCAAAAATGATCTGT+TGG - chr1_1:77643813-77643832 None:intergenic 30.0%
!! CAACAGATCATTTTTGAACA+AGG + chr1_1:77643811-77643830 Msa0045710:three_prime_UTR 30.0%
!! ACAGATCATTTTTGAACAAG+GGG + chr1_1:77643813-77643832 Msa0045710:three_prime_UTR 30.0%
ATGCTTTCTTCACTTTGTTA+GGG - chr1_1:77644000-77644019 None:intergenic 30.0%
! TAACAAAGTGAAGAAAGCAT+GGG + chr1_1:77644000-77644019 Msa0045710:three_prime_UTR 30.0%
!! AAGAAGTACTAAGTTACTAG+AGG - chr1_1:77644139-77644158 None:intergenic 30.0%
CTAGTAACTTAGTACTTCTT+TGG + chr1_1:77644139-77644158 Msa0045710:three_prime_UTR 30.0%
! GAAATTGGGATTAGGGTTTT+AGG - chr1_1:77639373-77639392 None:intergenic 35.0%
GAAAACGAGAAATTGGGATT+AGG - chr1_1:77639381-77639400 None:intergenic 35.0%
AGTGAGATTGTAGAGATACA+TGG - chr1_1:77639415-77639434 None:intergenic 35.0%
ATTCTCTCTGTTGAAGTCTT+CGG + chr1_1:77639567-77639586 Msa0045710:CDS 35.0%
AATAACAATCCTACCGGAAT+CGG - chr1_1:77639658-77639677 None:intergenic 35.0%
TATATTGCTGTAGATCCCAA+AGG + chr1_1:77639768-77639787 Msa0045710:CDS 35.0%
ATCATAACAGCTCTACCTTT+GGG - chr1_1:77639786-77639805 None:intergenic 35.0%
AATCATAACAGCTCTACCTT+TGG - chr1_1:77639787-77639806 None:intergenic 35.0%
AAAGGTAGAGCTGTTATGAT+TGG + chr1_1:77639786-77639805 Msa0045710:CDS 35.0%
!! TCAATTTGTGGTGTTGATTG+TGG + chr1_1:77639915-77639934 Msa0045710:CDS 35.0%
!! TATTGAGTTGGATTACTCTG+AGG + chr1_1:77639962-77639981 Msa0045710:CDS 35.0%
GACATTCTATGAGCTTGATT+TGG + chr1_1:77640034-77640053 Msa0045710:CDS 35.0%
TTAACCATGTTTCGAGAAAG+TGG + chr1_1:77640060-77640079 Msa0045710:CDS 35.0%
! AATTTGCTTGTTACTGTTCC+TGG + chr1_1:77640107-77640126 Msa0045710:CDS 35.0%
CTTAAAGATATCACCGTACT+CGG - chr1_1:77640318-77640337 None:intergenic 35.0%
!! TGATATCTTTAAGGCTACGT+TGG + chr1_1:77640325-77640344 Msa0045710:CDS 35.0%
CATTGAAGAAGTAACAGGAA+TGG - chr1_1:77640399-77640418 None:intergenic 35.0%
ACACACATTGAAGAAGTAAC+AGG - chr1_1:77640404-77640423 None:intergenic 35.0%
CATGGTCTGTATCAGTTTAA+GGG + chr1_1:77640467-77640486 Msa0045710:CDS 35.0%
CTGTATCAGTTTAAGGGAAT+AGG + chr1_1:77640473-77640492 Msa0045710:CDS 35.0%
GTATCAGTTTAAGGGAATAG+GGG + chr1_1:77640475-77640494 Msa0045710:CDS 35.0%
!! ACAAGGTTTTTCAGTTTCCT+GGG - chr1_1:77640575-77640594 None:intergenic 35.0%
!! AACAAGGTTTTTCAGTTTCC+TGG - chr1_1:77640576-77640595 None:intergenic 35.0%
GGAAACTGAAAAACCTTGTT+AGG + chr1_1:77640576-77640595 Msa0045710:CDS 35.0%
AAACCTTGTTAGGATTGATC+AGG + chr1_1:77640586-77640605 Msa0045710:CDS 35.0%
GATGCCAATTACTGATATGA+AGG + chr1_1:77640619-77640638 Msa0045710:CDS 35.0%
CTGACCTTCATATCAGTAAT+TGG - chr1_1:77640626-77640645 None:intergenic 35.0%
! ATTTTTACTCTTTGTGGTCG+TGG + chr1_1:77640674-77640693 Msa0045710:CDS 35.0%
ACCTATCAAAGAAACCGAAA+GGG - chr1_1:77640924-77640943 None:intergenic 35.0%
AAGTTCATCCAAACGGTATT+AGG + chr1_1:77640960-77640979 Msa0045710:CDS 35.0%
AAACGGTATTAGGCATATCA+GGG + chr1_1:77640970-77640989 Msa0045710:CDS 35.0%
GAGTTCTCCACTCATTAATA+CGG - chr1_1:77641003-77641022 None:intergenic 35.0%
AAGAGGACAATTGCAAAAGT+TGG + chr1_1:77641028-77641047 Msa0045710:CDS 35.0%
AGAGGACAATTGCAAAAGTT+GGG + chr1_1:77641029-77641048 Msa0045710:CDS 35.0%
! CAGGTTGTTATTGCTCTAAA+CGG + chr1_1:77641064-77641083 Msa0045710:CDS 35.0%
! TTGTTATTGCTCTAAACGGA+GGG + chr1_1:77641068-77641087 Msa0045710:CDS 35.0%
! ACAATAATGGGAAACAGCTT+CGG - chr1_1:77641496-77641515 None:intergenic 35.0%
CTGTTTCCCATTATTGTAAG+AGG + chr1_1:77641499-77641518 Msa0045710:CDS 35.0%
CGCTTTCCTCTTACAATAAT+GGG - chr1_1:77641508-77641527 None:intergenic 35.0%
ACGCTTTCCTCTTACAATAA+TGG - chr1_1:77641509-77641528 None:intergenic 35.0%
!! CATATGAAAGGGGTGTTAAA+AGG - chr1_1:77641588-77641607 None:intergenic 35.0%
TCAAGGGTTTCATATGAAAG+GGG - chr1_1:77641598-77641617 None:intergenic 35.0%
AAATGAGGCAGCAAATTCAA+GGG - chr1_1:77641614-77641633 None:intergenic 35.0%
AAAATGAGGCAGCAAATTCA+AGG - chr1_1:77641615-77641634 None:intergenic 35.0%
ACATTGGTCAGATGAAAATG+AGG - chr1_1:77641629-77641648 None:intergenic 35.0%
! ATTTTCATCTGACCAATGTG+TGG + chr1_1:77641630-77641649 Msa0045710:CDS 35.0%
! CACTTATCTGATTCAGCTTT+TGG - chr1_1:77641970-77641989 None:intergenic 35.0%
CAAAAGCTGAATCAGATAAG+TGG + chr1_1:77641968-77641987 Msa0045710:CDS 35.0%
AGAATTCTTGATCCCAAAAC+AGG + chr1_1:77642003-77642022 Msa0045710:CDS 35.0%
! CAGGTTGTATTTCCTGTTTT+GGG - chr1_1:77642018-77642037 None:intergenic 35.0%
! ACAGGTTGTATTTCCTGTTT+TGG - chr1_1:77642019-77642038 None:intergenic 35.0%
! AGGAAATACAACCTGTCTTT+TGG + chr1_1:77642023-77642042 Msa0045710:CDS 35.0%
TGAACTACTTCACAAAACTC+AGG + chr1_1:77642218-77642237 Msa0045710:CDS 35.0%
AAATCATATAGCCTGAGAAC+AGG - chr1_1:77642303-77642322 None:intergenic 35.0%
TGTTCTCAGGCTATATGATT+TGG + chr1_1:77642302-77642321 Msa0045710:CDS 35.0%
GTTCTCAGGCTATATGATTT+GGG + chr1_1:77642303-77642322 Msa0045710:CDS 35.0%
TGGGAAAAAGACGGTTATTA+AGG + chr1_1:77642322-77642341 Msa0045710:CDS 35.0%
GAATAGAGACAATTGTGTTG+GGG - chr1_1:77642368-77642387 None:intergenic 35.0%
AACATAAATTCGATCACGGT+AGG - chr1_1:77642394-77642413 None:intergenic 35.0%
TACCGTGATCGAATTTATGT+TGG + chr1_1:77642393-77642412 Msa0045710:CDS 35.0%
CACCAACATAAATTCGATCA+CGG - chr1_1:77642398-77642417 None:intergenic 35.0%
!! TTATGTTGGTGACATTCAAG+AGG + chr1_1:77642407-77642426 Msa0045710:CDS 35.0%
! GTTTTTATTAGAGCTCCAGA+AGG + chr1_1:77642603-77642622 Msa0045710:intron 35.0%
TCCATTACTGCAAGTATAGA+CGG + chr1_1:77642788-77642807 Msa0045710:CDS 35.0%
CATCAGCAAATATGTAGAGT+TGG - chr1_1:77642822-77642841 None:intergenic 35.0%
TGTATCTGATGAGATAGAAG+AGG + chr1_1:77642945-77642964 Msa0045710:CDS 35.0%
ATATGATCTCTTCCACACAA+AGG - chr1_1:77643225-77643244 None:intergenic 35.0%
TTTGTGTGGAAGAGATCATA+TGG + chr1_1:77643224-77643243 Msa0045710:CDS 35.0%
TACCTTAACAGGAAAATAGG+CGG - chr1_1:77643259-77643278 None:intergenic 35.0%
TTTGACATCCATATACTGGA+TGG + chr1_1:77643337-77643356 Msa0045710:intron 35.0%
! CCCTGTTATATTTTCCTTGA+TGG + chr1_1:77643369-77643388 Msa0045710:intron 35.0%
CCCATCAAGGAAAATATAAC+AGG - chr1_1:77643373-77643392 None:intergenic 35.0%
TGTGTAGGATGTTATTGATG+GGG + chr1_1:77643523-77643542 Msa0045710:intron 35.0%
! ATTTTTCTCTGCAGATCCAT+TGG - chr1_1:77643575-77643594 None:intergenic 35.0%
AAATTGCTGATGAATTGGAC+AGG + chr1_1:77643591-77643610 Msa0045710:CDS 35.0%
TTTCTTCAGTATTTCTCCAG+GGG - chr1_1:77643618-77643637 None:intergenic 35.0%
GTTTCTTCAGTATTTCTCCA+GGG - chr1_1:77643619-77643638 None:intergenic 35.0%
AGTTTCTTCAGTATTTCTCC+AGG - chr1_1:77643620-77643639 None:intergenic 35.0%
!! GTATGATCTCCTATTTCTGT+TGG + chr1_1:77643686-77643705 Msa0045710:intron 35.0%
GACAGTAAACCAACAGAAAT+AGG - chr1_1:77643698-77643717 None:intergenic 35.0%
!! GTGTGATTTGTATTTTGTGC+AGG + chr1_1:77643926-77643945 Msa0045710:intron 35.0%
! TTTGTATTTTGTGCAGGTGT+TGG + chr1_1:77643932-77643951 Msa0045710:intron 35.0%
CATGCTTTCTTCACTTTGTT+AGG - chr1_1:77644001-77644020 None:intergenic 35.0%
CTAACAAAGTGAAGAAAGCA+TGG + chr1_1:77643999-77644018 Msa0045710:three_prime_UTR 35.0%
! AACAAAGTGAAGAAAGCATG+GGG + chr1_1:77644001-77644020 Msa0045710:three_prime_UTR 35.0%
!!! GGATTAGGGTTTTAGGGTTT+CGG - chr1_1:77639366-77639385 None:intergenic 40.0%
GAAGACTTCAACAGAGAGAA+TGG - chr1_1:77639568-77639587 None:intergenic 40.0%
CAGAAGGATTTCATCGTTGT+CGG + chr1_1:77639630-77639649 Msa0045710:CDS 40.0%
!! CAAGAGACTTTTGGGAAATC+TGG + chr1_1:77639720-77639739 Msa0045710:CDS 40.0%
TCTACAGCAATATACTCACC+TGG - chr1_1:77639762-77639781 None:intergenic 40.0%
TGAATAGAGATACTGCTGCT+AGG + chr1_1:77639841-77639860 Msa0045710:CDS 40.0%
!! TGGTCTGATCAGGTTGATAA+TGG + chr1_1:77640080-77640099 Msa0045710:CDS 40.0%
! AAGTGGAGTTCTTGTTTGTG+CGG + chr1_1:77640145-77640164 Msa0045710:CDS 40.0%
!! ATATAAGAATCAGGGGCATC+CGG + chr1_1:77640181-77640200 Msa0045710:CDS 40.0%
TGCTGCTATGCATAAACTGA+AGG + chr1_1:77640268-77640287 Msa0045710:CDS 40.0%
GCTGCTATGCATAAACTGAA+GGG + chr1_1:77640269-77640288 Msa0045710:CDS 40.0%
CTATGCATAAACTGAAGGGT+GGG + chr1_1:77640273-77640292 Msa0045710:CDS 40.0%
CGAGTACGGTGATATCTTTA+AGG + chr1_1:77640316-77640335 Msa0045710:CDS 40.0%
TTCAATGTGTGTGCTCAAGT+CGG + chr1_1:77640412-77640431 Msa0045710:CDS 40.0%
CCTTAAACTGATACAGACCA+TGG - chr1_1:77640469-77640488 None:intergenic 40.0%
CCATGGTCTGTATCAGTTTA+AGG + chr1_1:77640466-77640485 Msa0045710:CDS 40.0%
! AATAGGGGATGATGATGATG+TGG + chr1_1:77640490-77640509 Msa0045710:CDS 40.0%
CAACCTGATCAATCCTAACA+AGG - chr1_1:77640592-77640611 None:intergenic 40.0%
AAGATCCTCAAAGAAGATCG+AGG - chr1_1:77640701-77640720 None:intergenic 40.0%
! TCTTTGAGGATCTTGAGAAC+AGG + chr1_1:77640707-77640726 Msa0045710:CDS 40.0%
ATCAAAGAAACCGAAAGGGA+GGG - chr1_1:77640920-77640939 None:intergenic 40.0%
TATCAAAGAAACCGAAAGGG+AGG - chr1_1:77640921-77640940 None:intergenic 40.0%
TCCCTTTCGGTTTCTTTGAT+AGG + chr1_1:77640920-77640939 Msa0045710:CDS 40.0%
CACCTATCAAAGAAACCGAA+AGG - chr1_1:77640925-77640944 None:intergenic 40.0%
CTCATGCAAGTTCATCCAAA+CGG + chr1_1:77640953-77640972 Msa0045710:CDS 40.0%
CTGATATGCCTAATACCGTT+TGG - chr1_1:77640971-77640990 None:intergenic 40.0%
CAAACGGTATTAGGCATATC+AGG + chr1_1:77640969-77640988 Msa0045710:CDS 40.0%
ATTAATGAGTGGAGAACTCC+TGG + chr1_1:77641004-77641023 Msa0045710:CDS 40.0%
TTTGCAATTGTCCTCTTTCC+AGG - chr1_1:77641025-77641044 None:intergenic 40.0%
! GTTGTTATTGCTCTAAACGG+AGG + chr1_1:77641067-77641086 Msa0045710:CDS 40.0%
! TGTTATTGCTCTAAACGGAG+GGG + chr1_1:77641069-77641088 Msa0045710:CDS 40.0%
GGATGTAACTGGTCAATTGA+TGG + chr1_1:77641111-77641130 Msa0045710:CDS 40.0%
TGTAACTGGTCAATTGATGG+AGG + chr1_1:77641114-77641133 Msa0045710:CDS 40.0%
ATGAGCCAACAGCAAGAAAA+CGG - chr1_1:77641213-77641232 None:intergenic 40.0%
GACAATCCGAATCTTATCAC+TGG + chr1_1:77641240-77641259 Msa0045710:CDS 40.0%
CAGGATCCAGTGATAAGATT+CGG - chr1_1:77641249-77641268 None:intergenic 40.0%
AGAGTCTGCATACAATCATC+AGG - chr1_1:77641268-77641287 None:intergenic 40.0%
GATGATTGTATGCAGACTCT+AGG + chr1_1:77641268-77641287 Msa0045710:CDS 40.0%
TCAAGGAAAAGAAGCGATTC+TGG - chr1_1:77641316-77641335 None:intergenic 40.0%
CAACAGATGCTTGAACTTCA+AGG - chr1_1:77641333-77641352 None:intergenic 40.0%
CTTGAAGTTCAAGCATCTGT+TGG + chr1_1:77641331-77641350 Msa0045710:CDS 40.0%
! AATAATGGGAAACAGCTTCG+GGG - chr1_1:77641494-77641513 None:intergenic 40.0%
! CAATAATGGGAAACAGCTTC+GGG - chr1_1:77641495-77641514 None:intergenic 40.0%
!! GTGTTAAAAGGAAGTGTCCT+TGG - chr1_1:77641576-77641595 None:intergenic 40.0%
AATTTGTGCTGCAACCCAAA+CGG + chr1_1:77641758-77641777 Msa0045710:CDS 40.0%
ACCACCAAAAGTTTCCGTTT+GGG - chr1_1:77641775-77641794 None:intergenic 40.0%
!!! TGCAAGGAAAGAGTGTTTTG+AGG + chr1_1:77641840-77641859 Msa0045710:CDS 40.0%
ACCATAATGCTCATCAGAGA+GGG - chr1_1:77641944-77641963 None:intergenic 40.0%
AACCATAATGCTCATCAGAG+AGG - chr1_1:77641945-77641964 None:intergenic 40.0%
! TTTGGAGCTTCAGGATAATG+AGG + chr1_1:77642041-77642060 Msa0045710:CDS 40.0%
! CCAGCAGTTAAACTCCTTTT+GGG - chr1_1:77642156-77642175 None:intergenic 40.0%
! TCCAGCAGTTAAACTCCTTT+TGG - chr1_1:77642157-77642176 None:intergenic 40.0%
!! CTTCACAAAACTCAGGTTGA+AGG + chr1_1:77642225-77642244 Msa0045710:CDS 40.0%
TGAAACTGACTAAGAGCAAG+AGG - chr1_1:77642255-77642274 None:intergenic 40.0%
TCTTGCTCTTAGTCAGTTTC+AGG + chr1_1:77642254-77642273 Msa0045710:CDS 40.0%
CTTGCTCTTAGTCAGTTTCA+GGG + chr1_1:77642255-77642274 Msa0045710:CDS 40.0%
TTTCAGGGAAGATTACTTGC+AGG + chr1_1:77642270-77642289 Msa0045710:CDS 40.0%
GGAAGATTACTTGCAGGATT+AGG + chr1_1:77642276-77642295 Msa0045710:CDS 40.0%
CTGACACTATAACCTGTCTT+TGG + chr1_1:77642547-77642566 Msa0045710:intron 40.0%
! ACTTGCAGTAATGGAAAGAC+TGG - chr1_1:77642783-77642802 None:intergenic 40.0%
CCATTACTGCAAGTATAGAC+GGG + chr1_1:77642789-77642808 Msa0045710:CDS 40.0%
! CCATGGTGTCAAAATCTATG+TGG - chr1_1:77642876-77642895 None:intergenic 40.0%
!! CCACATAGATTTTGACACCA+TGG + chr1_1:77642873-77642892 Msa0045710:CDS 40.0%
!! ATAGATTTTGACACCATGGC+AGG + chr1_1:77642877-77642896 Msa0045710:CDS 40.0%
ATCTCATCAGATACATCCTG+CGG - chr1_1:77642940-77642959 None:intergenic 40.0%
!! GGTGGAGAGTGCATTTTATA+TGG + chr1_1:77643099-77643118 Msa0045710:CDS 40.0%
! GGAACAGTTATGGGAAGTAT+TGG + chr1_1:77643120-77643139 Msa0045710:CDS 40.0%
CTCATTTGGAGATGCATATG+AGG + chr1_1:77643187-77643206 Msa0045710:CDS 40.0%
! ATCCGCCTATTTTCCTGTTA+AGG + chr1_1:77643254-77643273 Msa0045710:CDS 40.0%
GCTGTTTGACATCCATATAC+TGG + chr1_1:77643333-77643352 Msa0045710:intron 40.0%
GAAAGCTTCCATCCAGTATA+TGG - chr1_1:77643348-77643367 None:intergenic 40.0%
! GACTTTTTAAACCATGCCTC+TGG + chr1_1:77643402-77643421 Msa0045710:intron 40.0%
! CATGTAGGTATTTTCACCAG+AGG - chr1_1:77643421-77643440 None:intergenic 40.0%
CACGAAATGTATGGACATGT+AGG - chr1_1:77643436-77643455 None:intergenic 40.0%
ATGTTGGGAATTGCTCACAT+AGG - chr1_1:77643550-77643569 None:intergenic 40.0%
GCAATTCCCAACATTACCAA+TGG + chr1_1:77643556-77643575 Msa0045710:CDS 40.0%
!! GCAGATCCATTGGTAATGTT+GGG - chr1_1:77643565-77643584 None:intergenic 40.0%
!! TGCAGATCCATTGGTAATGT+TGG - chr1_1:77643566-77643585 None:intergenic 40.0%
GCGCTAGTCAAATGTTGATA+TGG + chr1_1:77643844-77643863 Msa0045710:three_prime_UTR 40.0%
! TGTTACTTGAGTAAGCCGTT+TGG + chr1_1:77643967-77643986 Msa0045710:three_prime_UTR 40.0%
CATGGGGTTTCTCATTCATA+CGG + chr1_1:77644017-77644036 Msa0045710:three_prime_UTR 40.0%
ATGGGGTTTCTCATTCATAC+GGG + chr1_1:77644018-77644037 Msa0045710:three_prime_UTR 40.0%
!! GAGATCTAAGGTTTTGCCTC+TGG - chr1_1:77639514-77639533 None:intergenic 45.0%
TTGAATTCGACCGTTGTCGT+CGG - chr1_1:77639544-77639563 None:intergenic 45.0%
AGTGAGACGAAACTGAGCTA+GGG - chr1_1:77639604-77639623 None:intergenic 45.0%
!! CTTTTGGGAAATCTGGTTGC+CGG + chr1_1:77639727-77639746 Msa0045710:CDS 45.0%
ACTCACCTGGAACAATTCTC+CGG - chr1_1:77639749-77639768 None:intergenic 45.0%
CATACCAGTCGAATCCTGAT+CGG - chr1_1:77639988-77640007 None:intergenic 45.0%
CAGACCACTTTCTCGAAACA+TGG - chr1_1:77640067-77640086 None:intergenic 45.0%
TTCGAGAAAGTGGTCTGATC+AGG + chr1_1:77640070-77640089 Msa0045710:CDS 45.0%
! TTGCTTGTTACTGTTCCTGG+TGG + chr1_1:77640110-77640129 Msa0045710:CDS 45.0%
GCACAAACAAGAACTCCACT+TGG - chr1_1:77640146-77640165 None:intergenic 45.0%
GCTATGCATAAACTGAAGGG+TGG + chr1_1:77640272-77640291 Msa0045710:CDS 45.0%
TAAGGCTACGTTGGAACATG+AGG + chr1_1:77640334-77640353 Msa0045710:CDS 45.0%
AAGGCTACGTTGGAACATGA+GGG + chr1_1:77640335-77640354 Msa0045710:CDS 45.0%
TCAATGTGTGTGCTCAAGTC+GGG + chr1_1:77640413-77640432 Msa0045710:CDS 45.0%
AGCCTGATGGAAACTGAAGA+GGG + chr1_1:77640527-77640546 Msa0045710:CDS 45.0%
AACCCTCTTCAGTTTCCATC+AGG - chr1_1:77640532-77640551 None:intergenic 45.0%
GGTCAGCAATCTGTTTGAAG+AGG + chr1_1:77640640-77640659 Msa0045710:CDS 45.0%
GAGGATCTTGAGAACAGGTT+TGG + chr1_1:77640712-77640731 Msa0045710:CDS 45.0%
CAAACAGCACTAGGTATACC+GGG - chr1_1:77640767-77640786 None:intergenic 45.0%
CCAAACAGCACTAGGTATAC+CGG - chr1_1:77640768-77640787 None:intergenic 45.0%
TTCACAGTCCAAACAGCACT+AGG - chr1_1:77640776-77640795 None:intergenic 45.0%
! CTCACCAATGGAAAGCACAA+GGG - chr1_1:77640855-77640874 None:intergenic 45.0%
! TCTCACCAATGGAAAGCACA+AGG - chr1_1:77640856-77640875 None:intergenic 45.0%
TTCTTCGACTGTCTCACCAA+TGG - chr1_1:77640867-77640886 None:intergenic 45.0%
TCGAAGAAGTCAGTGACAGT+GGG + chr1_1:77640879-77640898 Msa0045710:CDS 45.0%
!! AGTCAGTGACAGTGGGTTTT+TGG + chr1_1:77640886-77640905 Msa0045710:CDS 45.0%
ATTAGGCATATCAGGGAGGA+TGG + chr1_1:77640977-77640996 Msa0045710:CDS 45.0%
AGGATGGCCGTATTAATGAG+TGG + chr1_1:77640993-77641012 Msa0045710:CDS 45.0%
AGTTGGGTCGAATAGACTTC+AGG + chr1_1:77641045-77641064 Msa0045710:CDS 45.0%
AACTGGTCAATTGATGGAGG+TGG + chr1_1:77641117-77641136 Msa0045710:CDS 45.0%
! GTGGAGAAGCATGAAATGTC+TGG + chr1_1:77641136-77641155 Msa0045710:CDS 45.0%
! GTCTGGTGATGTTGCTTGTT+TGG + chr1_1:77641153-77641172 Msa0045710:CDS 45.0%
!! AGATCCCGTTTTCTTGCTGT+TGG + chr1_1:77641205-77641224 Msa0045710:CDS 45.0%
TGAGCCAACAGCAAGAAAAC+GGG - chr1_1:77641212-77641231 None:intergenic 45.0%
GAAGTTCAAGCATCTGTTGG+CGG + chr1_1:77641334-77641353 Msa0045710:CDS 45.0%
GATACTCGATCCCGATTCTT+AGG + chr1_1:77641460-77641479 Msa0045710:CDS 45.0%
GGGTCTCAATCCTAAGAATC+GGG - chr1_1:77641473-77641492 None:intergenic 45.0%
GGGGTCTCAATCCTAAGAAT+CGG - chr1_1:77641474-77641493 None:intergenic 45.0%
! ATAATGGGAAACAGCTTCGG+GGG - chr1_1:77641493-77641512 None:intergenic 45.0%
GGTGAATGTAACCAAGCCAA+GGG - chr1_1:77641555-77641574 None:intergenic 45.0%
TGGTGAATGTAACCAAGCCA+AGG - chr1_1:77641556-77641575 None:intergenic 45.0%
!! TGGCTTGGTTACATTCACCA+AGG + chr1_1:77641556-77641575 Msa0045710:CDS 45.0%
TCATCTGACCAATGTGTGGA+AGG + chr1_1:77641634-77641653 Msa0045710:CDS 45.0%
CAACTACACCTTCCACACAT+TGG - chr1_1:77641645-77641664 None:intergenic 45.0%
TTCCACTTAGATACACGCCT+AGG + chr1_1:77641734-77641753 Msa0045710:CDS 45.0%
TTCCTAGGCGTGTATCTAAG+TGG - chr1_1:77641739-77641758 None:intergenic 45.0%
GGTTGCAGCACAAATTTCCT+AGG - chr1_1:77641754-77641773 None:intergenic 45.0%
! GCAACCCAAACGGAAACTTT+TGG + chr1_1:77641768-77641787 Msa0045710:CDS 45.0%
! ACCCAAACGGAAACTTTTGG+TGG + chr1_1:77641771-77641790 Msa0045710:CDS 45.0%
CACCACCAAAAGTTTCCGTT+TGG - chr1_1:77641776-77641795 None:intergenic 45.0%
GTGGTGATTGAGAGTGATCA+AGG + chr1_1:77641790-77641809 Msa0045710:CDS 45.0%
! GACAGAAAGTGCAGACCAAA+TGG + chr1_1:77641885-77641904 Msa0045710:CDS 45.0%
AGTGCAGACCAAATGGAGAA+TGG + chr1_1:77641892-77641911 Msa0045710:CDS 45.0%
CATAATGCTCATCAGAGAGG+GGG - chr1_1:77641942-77641961 None:intergenic 45.0%
CCATAATGCTCATCAGAGAG+GGG - chr1_1:77641943-77641962 None:intergenic 45.0%
GGGATCAAGAATTCTGATGC+AGG - chr1_1:77641998-77642017 None:intergenic 45.0%
!!! AACCTGTCTTTTGGAGCTTC+AGG + chr1_1:77642032-77642051 Msa0045710:CDS 45.0%
ATCCTGAAGCTCCAAAAGAC+AGG - chr1_1:77642037-77642056 None:intergenic 45.0%
! TACGGAACTCTTTTAGCCGT+TGG + chr1_1:77642105-77642124 Msa0045710:CDS 45.0%
GACTGCAATTTACGCCCAAA+AGG + chr1_1:77642139-77642158 Msa0045710:CDS 45.0%
CCCAAAAGGAGTTTAACTGC+TGG + chr1_1:77642153-77642172 Msa0045710:CDS 45.0%
TTAACACTCTGGCCAAAGAC+AGG - chr1_1:77642562-77642581 None:intergenic 45.0%
CCCGTCTATACTTGCAGTAA+TGG - chr1_1:77642792-77642811 None:intergenic 45.0%
CTGATGATTGCGTTCCAAGA+TGG + chr1_1:77642836-77642855 Msa0045710:CDS 45.0%
TATGATGCGGTAAGCCATCT+TGG - chr1_1:77642853-77642872 None:intergenic 45.0%
GAGATAGAAGAGGATCCTAC+TGG + chr1_1:77642955-77642974 Msa0045710:CDS 45.0%
ATAGAAGAGGATCCTACTGG+TGG + chr1_1:77642958-77642977 Msa0045710:CDS 45.0%
TAGAAGAGGATCCTACTGGT+GGG + chr1_1:77642959-77642978 Msa0045710:CDS 45.0%
TGTGATCTCATGCCTGCAAA+AGG + chr1_1:77643059-77643078 Msa0045710:CDS 45.0%
! GTATAAGAGAGGCCTTTTGC+AGG - chr1_1:77643074-77643093 None:intergenic 45.0%
CAAAAGGCCTCTCTTATACC+AGG + chr1_1:77643075-77643094 Msa0045710:CDS 45.0%
TTTGGAGATGCATATGAGGC+AGG + chr1_1:77643191-77643210 Msa0045710:CDS 45.0%
CAGGATAATCCACCTTTGTG+TGG + chr1_1:77643210-77643229 Msa0045710:CDS 45.0%
TGATCTCTTCCACACAAAGG+TGG - chr1_1:77643222-77643241 None:intergenic 45.0%
AGTCATAAGCAGACCCATCA+AGG - chr1_1:77643386-77643405 None:intergenic 45.0%
! AGGTATTTTCACCAGAGGCA+TGG - chr1_1:77643416-77643435 None:intergenic 45.0%
CTTCACTTTGTTAGGGAGCA+AGG - chr1_1:77643993-77644012 None:intergenic 45.0%
GGTTTCTCATTCATACGGGA+AGG + chr1_1:77644022-77644041 Msa0045710:three_prime_UTR 45.0%
TTCTCATTCATACGGGAAGG+CGG + chr1_1:77644025-77644044 Msa0045710:three_prime_UTR 45.0%
ACCAATCAGGCTGCCTATTT+GGG + chr1_1:77644175-77644194 Msa0045710:three_prime_UTR 45.0%
CTTCACTGTGACTGTGTGAG+TGG - chr1_1:77639321-77639340 None:intergenic 50.0%
!! GTTGATGGCGCAGATGATTC+CGG - chr1_1:77639451-77639470 None:intergenic 50.0%
GGAATCATCTGCGCCATCAA+CGG + chr1_1:77639450-77639469 Msa0045710:CDS 50.0%
GATTTCTTGACCCTTACCGC+CGG - chr1_1:77639484-77639503 None:intergenic 50.0%
TGAATTCGACCGTTGTCGTC+GGG - chr1_1:77639543-77639562 None:intergenic 50.0%
CAGTGAGACGAAACTGAGCT+AGG - chr1_1:77639605-77639624 None:intergenic 50.0%
CTAGCTCAGTTTCGTCTCAC+TGG + chr1_1:77639603-77639622 Msa0045710:CDS 50.0%
!! ATCGTTGTCGGTTCCGATTC+CGG + chr1_1:77639642-77639661 Msa0045710:CDS 50.0%
CGATCAGGATTCGACTGGTA+TGG + chr1_1:77639986-77640005 Msa0045710:CDS 50.0%
GGAATCACAGCCCTAACATC+CGG - chr1_1:77640203-77640222 None:intergenic 50.0%
ATAAGAACACCACGCTCAGC+AGG - chr1_1:77640242-77640261 None:intergenic 50.0%
TTCCTTCTGCAGACCGAGTA+CGG + chr1_1:77640302-77640321 Msa0045710:CDS 50.0%
CGTTGGAACATGAGGGTGAT+CGG + chr1_1:77640342-77640361 Msa0045710:CDS 50.0%
CAATGTGTGTGCTCAAGTCG+GGG + chr1_1:77640414-77640433 Msa0045710:CDS 50.0%
! CAAGTCGGGGTTCTTGTTTG+CGG + chr1_1:77640427-77640446 Msa0045710:CDS 50.0%
TTGTTTGCGGCGTCTGAGTT+TGG + chr1_1:77640440-77640459 Msa0045710:CDS 50.0%
GCGTCTGAGTTTGGAAACCA+TGG + chr1_1:77640449-77640468 Msa0045710:CDS 50.0%
! AGGGGATGATGATGATGTGG+AGG + chr1_1:77640493-77640512 Msa0045710:CDS 50.0%
GAGCCTGATGGAAACTGAAG+AGG + chr1_1:77640526-77640545 Msa0045710:CDS 50.0%
! TTCCTGGGCTGGAAAAACAC+AGG - chr1_1:77640560-77640579 None:intergenic 50.0%
!! GGTTTTTCAGTTTCCTGGGC+TGG - chr1_1:77640571-77640590 None:intergenic 50.0%
GTGGACCTCGATCTTCTTTG+AGG + chr1_1:77640693-77640712 Msa0045710:CDS 50.0%
AGGTTTGGCTGTCAGTGAGA+TGG + chr1_1:77640727-77640746 Msa0045710:CDS 50.0%
ATGGCAGTTTCCAAGCTTCC+CGG + chr1_1:77640746-77640765 Msa0045710:CDS 50.0%
ACTAGGTATACCGGGAAGCT+TGG - chr1_1:77640759-77640778 None:intergenic 50.0%
! CCGGTATACCTAGTGCTGTT+TGG + chr1_1:77640765-77640784 Msa0045710:CDS 50.0%
! ACCAATGGAAAGCACAAGGG+TGG - chr1_1:77640852-77640871 None:intergenic 50.0%
GTCGAAGAAGTCAGTGACAG+TGG + chr1_1:77640878-77640897 Msa0045710:CDS 50.0%
CGGTATTAGGCATATCAGGG+AGG + chr1_1:77640973-77640992 Msa0045710:CDS 50.0%
AGTGGAGAACTCCTGGAAAG+AGG + chr1_1:77641011-77641030 Msa0045710:CDS 50.0%
CGTTCAGGAAAAGGCTAGCA+GGG - chr1_1:77641378-77641397 None:intergenic 50.0%
GCAAACCAGCGTTCAGGAAA+AGG - chr1_1:77641387-77641406 None:intergenic 50.0%
CATTCTGCAAACCAGCGTTC+AGG - chr1_1:77641393-77641412 None:intergenic 50.0%
!! CTGAACGCTGGTTTGCAGAA+TGG + chr1_1:77641391-77641410 Msa0045710:CDS 50.0%
!! TATCCACCACGGTTCTAGAC+AGG - chr1_1:77641420-77641439 None:intergenic 50.0%
!! GTCTAGAACCGTGGTGGATA+TGG + chr1_1:77641420-77641439 Msa0045710:CDS 50.0%
ACCTGTGACCATATCCACCA+CGG - chr1_1:77641431-77641450 None:intergenic 50.0%
! GAAGGTGTAGTTGCTGTTGC+TGG + chr1_1:77641652-77641671 Msa0045710:CDS 50.0%
! TGTAGTTGCTGTTGCTGGTG+AGG + chr1_1:77641657-77641676 Msa0045710:CDS 50.0%
!!! TGTTTTGAGGCTGCTCAAGC+TGG + chr1_1:77641853-77641872 Msa0045710:CDS 50.0%
!!! GTTTTGAGGCTGCTCAAGCT+GGG + chr1_1:77641854-77641873 Msa0045710:CDS 50.0%
!!! TTTTGAGGCTGCTCAAGCTG+GGG + chr1_1:77641855-77641874 Msa0045710:CDS 50.0%
CTGCTCAAGCTGGGGAAAAT+GGG + chr1_1:77641863-77641882 Msa0045710:CDS 50.0%
GCAGACCAAATGGAGAATGG+CGG + chr1_1:77641895-77641914 Msa0045710:CDS 50.0%
CAGACCAAATGGAGAATGGC+GGG + chr1_1:77641896-77641915 Msa0045710:CDS 50.0%
AGACCAAATGGAGAATGGCG+GGG + chr1_1:77641897-77641916 Msa0045710:CDS 50.0%
CCCCTCTCTGATGAGCATTA+TGG + chr1_1:77641940-77641959 Msa0045710:CDS 50.0%
TTTAGCCGTTGGCACAGCAA+AGG + chr1_1:77642116-77642135 Msa0045710:CDS 50.0%
TTAGCCGTTGGCACAGCAAA+GGG + chr1_1:77642117-77642136 Msa0045710:CDS 50.0%
CAGGATTAGGACCTGTTCTC+AGG + chr1_1:77642289-77642308 Msa0045710:CDS 50.0%
! TTTTGACACCATGGCAGGTG+CGG + chr1_1:77642882-77642901 Msa0045710:CDS 50.0%
TACTGGTGGGAGGATCAAGT+GGG + chr1_1:77642972-77642991 Msa0045710:CDS 50.0%
GCTGAATGGAGCTCCCAATA+AGG + chr1_1:77643005-77643024 Msa0045710:CDS 50.0%
GAATGGAGCTCCCAATAAGG+TGG + chr1_1:77643008-77643027 Msa0045710:CDS 50.0%
AAGGCCTCTCTTATACCAGG+TGG + chr1_1:77643078-77643097 Msa0045710:CDS 50.0%
TCCACCACCTGGTATAAGAG+AGG - chr1_1:77643085-77643104 None:intergenic 50.0%
AAAATGCACTCTCCACCACC+TGG - chr1_1:77643096-77643115 None:intergenic 50.0%
!! TTTGTGCAGGTGTTGGCGAA+AGG + chr1_1:77643939-77643958 Msa0045710:intron 50.0%
TGTTAGGGAGCAAGGCCAAA+CGG - chr1_1:77643985-77644004 None:intergenic 50.0%
TGTCCCTCAGTTCACCAATC+AGG + chr1_1:77644162-77644181 Msa0045710:three_prime_UTR 50.0%
CAGCCTGATTGGTGAACTGA+GGG - chr1_1:77644168-77644187 None:intergenic 50.0%
CACCAATCAGGCTGCCTATT+TGG + chr1_1:77644174-77644193 Msa0045710:three_prime_UTR 50.0%
TCCCAAATAGGCAGCCTGAT+TGG - chr1_1:77644179-77644198 None:intergenic 50.0%
TGAGTGGAGCGGGAACAATG+CGG - chr1_1:77639305-77639324 None:intergenic 55.0%
TGTGACTGTGTGAGTGGAGC+GGG - chr1_1:77639315-77639334 None:intergenic 55.0%
CTGTGACTGTGTGAGTGGAG+CGG - chr1_1:77639316-77639335 None:intergenic 55.0%
CTCACTCTTCAACGACCCAC+CGG + chr1_1:77639429-77639448 Msa0045710:CDS 55.0%
ATGGCGCAGATGATTCCGGT+GGG - chr1_1:77639447-77639466 None:intergenic 55.0%
GCCATCAACGGCAACTTCTC+CGG + chr1_1:77639462-77639481 Msa0045710:CDS 55.0%
ATCAACGGCAACTTCTCCGG+CGG + chr1_1:77639465-77639484 Msa0045710:CDS 55.0%
CAAGAAATCGTCGTCGCCAG+AGG + chr1_1:77639495-77639514 Msa0045710:CDS 55.0%
GAATTCGACCGTTGTCGTCG+GGG - chr1_1:77639542-77639561 None:intergenic 55.0%
TCGTCTCACTGGTGCTCAGA+AGG + chr1_1:77639614-77639633 Msa0045710:CDS 55.0%
!! TTGTCGGTTCCGATTCCGGT+AGG + chr1_1:77639646-77639665 Msa0045710:CDS 55.0%
GGTTGCCGGAGAATTGTTCC+AGG + chr1_1:77639741-77639760 Msa0045710:CDS 55.0%
!! GGATTACTCTGAGGCCGATC+AGG + chr1_1:77639971-77639990 Msa0045710:CDS 55.0%
! ACTGTTCCTGGTGGTGCTGA+TGG + chr1_1:77640119-77640138 Msa0045710:CDS 55.0%
!! ATCAGGGGCATCCGGATGTT+AGG + chr1_1:77640189-77640208 Msa0045710:CDS 55.0%
!! TCAGGGGCATCCGGATGTTA+GGG + chr1_1:77640190-77640209 Msa0045710:CDS 55.0%
GCAGGCAAATCAGCACGTCT+GGG - chr1_1:77640224-77640243 None:intergenic 55.0%
AGCAGGCAAATCAGCACGTC+TGG - chr1_1:77640225-77640244 None:intergenic 55.0%
! AGCCTGTGTTTTTCCAGCCC+AGG + chr1_1:77640555-77640574 Msa0045710:CDS 55.0%
! GGAAAGCACAAGGGTGGCAT+TGG - chr1_1:77640846-77640865 None:intergenic 55.0%
GCCACCCTTGTGCTTTCCAT+TGG + chr1_1:77640848-77640867 Msa0045710:CDS 55.0%
GGACACTACTCCCTCCCTTT+CGG + chr1_1:77640907-77640926 Msa0045710:CDS 55.0%
GACATTGCTCCAGTGCCTGA+AGG + chr1_1:77641175-77641194 Msa0045710:CDS 55.0%
CTTTGTCTGCCTTCAGGCAC+TGG - chr1_1:77641187-77641206 None:intergenic 55.0%
CGGGATCTTTGTCTGCCTTC+AGG - chr1_1:77641193-77641212 None:intergenic 55.0%
TCAAGCATCTGTTGGCGGTG+AGG + chr1_1:77641339-77641358 Msa0045710:CDS 55.0%
CATCTGTTGGCGGTGAGGAT+GGG + chr1_1:77641344-77641363 Msa0045710:CDS 55.0%
ATCTGTTGGCGGTGAGGATG+GGG + chr1_1:77641345-77641364 Msa0045710:CDS 55.0%
GCGTTCAGGAAAAGGCTAGC+AGG - chr1_1:77641379-77641398 None:intergenic 55.0%
!!! GCTAGCCTTTTCCTGAACGC+TGG + chr1_1:77641379-77641398 Msa0045710:CDS 55.0%
! TGGTGTCCTGTCTAGAACCG+TGG + chr1_1:77641411-77641430 Msa0045710:CDS 55.0%
! TGTCCTGTCTAGAACCGTGG+TGG + chr1_1:77641414-77641433 Msa0045710:CDS 55.0%
!! ACCGTGGTGGATATGGTCAC+AGG + chr1_1:77641427-77641446 Msa0045710:CDS 55.0%
! CAGAAGAGCGTGAAGCTGCA+AGG + chr1_1:77641824-77641843 Msa0045710:CDS 55.0%
GCTGCTCAAGCTGGGGAAAA+TGG + chr1_1:77641862-77641881 Msa0045710:CDS 55.0%
! CAGTCCCTTTGCTGTGCCAA+CGG - chr1_1:77642124-77642143 None:intergenic 55.0%
AAACTTGTCCGCACCTGCCA+TGG - chr1_1:77642893-77642912 None:intergenic 55.0%
ATGGCAGGTGCGGACAAGTT+TGG + chr1_1:77642892-77642911 Msa0045710:CDS 55.0%
! CTATTTTGTGCGGTTGCCGC+AGG + chr1_1:77642921-77642940 Msa0045710:CDS 55.0%
AAGAGGATCCTACTGGTGGG+AGG + chr1_1:77642962-77642981 Msa0045710:CDS 55.0%
CACTTGATCCTCCCACCAGT+AGG - chr1_1:77642973-77642992 None:intergenic 55.0%
CTACTGGTGGGAGGATCAAG+TGG + chr1_1:77642971-77642990 Msa0045710:CDS 55.0%
GCCTCTCTTATACCAGGTGG+TGG + chr1_1:77643081-77643100 Msa0045710:CDS 55.0%
GATGAATTGGACAGGACCCC+TGG + chr1_1:77643599-77643618 Msa0045710:CDS 55.0%
GCAGCCTGATTGGTGAACTG+AGG - chr1_1:77644169-77644188 None:intergenic 55.0%
GATGGCGCAGATGATTCCGG+TGG - chr1_1:77639448-77639467 None:intergenic 60.0%
GCCGGAGAAGTTGCCGTTGA+TGG - chr1_1:77639466-77639485 None:intergenic 60.0%
GGCAACTTCTCCGGCGGTAA+GGG + chr1_1:77639471-77639490 Msa0045710:CDS 60.0%
GTCGGGGCGAAGGAGATCTA+AGG - chr1_1:77639526-77639545 None:intergenic 60.0%
GAGGCCGATCAGGATTCGAC+TGG + chr1_1:77639981-77640000 Msa0045710:CDS 60.0%
CTTGGTCCATCAGCACCACC+AGG - chr1_1:77640128-77640147 None:intergenic 60.0%
!! GGTGGTGCTGATGGACCAAG+TGG + chr1_1:77640128-77640147 Msa0045710:CDS 60.0%
!! GCTGATTTGCCTGCTGAGCG+TGG + chr1_1:77640230-77640249 Msa0045710:CDS 60.0%
CACCGTACTCGGTCTGCAGA+AGG - chr1_1:77640307-77640326 None:intergenic 60.0%
TTCCATCAGGCTCGCAGACG+AGG - chr1_1:77640519-77640538 None:intergenic 60.0%
GCATCTGTTGGCGGTGAGGA+TGG + chr1_1:77641343-77641362 Msa0045710:CDS 60.0%
TCTGCCTGTCAAGTCGCCCT+TGG + chr1_1:77641536-77641555 Msa0045710:CDS 60.0%
CAAGCCAAGGGCGACTTGAC+AGG - chr1_1:77641543-77641562 None:intergenic 60.0%
CTGTCAAGTCGCCCTTGGCT+TGG + chr1_1:77641541-77641560 Msa0045710:CDS 60.0%
CCTCCCCGCCATTCTCCATT+TGG - chr1_1:77641903-77641922 None:intergenic 60.0%
! CCAAATGGAGAATGGCGGGG+AGG + chr1_1:77641900-77641919 Msa0045710:CDS 60.0%
TGGGAGGATCAAGTGGGAGC+AGG + chr1_1:77642978-77642997 Msa0045710:CDS 60.0%
GGGAGGATCAAGTGGGAGCA+GGG + chr1_1:77642979-77642998 Msa0045710:CDS 60.0%
GGAGGATCAAGTGGGAGCAG+GGG + chr1_1:77642980-77642999 Msa0045710:CDS 60.0%
TGGGAGCAGGGGAAGCTGAA+TGG + chr1_1:77642991-77643010 Msa0045710:CDS 60.0%
GTGGAGCGGGAACAATGCGG+AGG - chr1_1:77639302-77639321 None:intergenic 65.0%
CGGCAACTTCTCCGGCGGTA+AGG + chr1_1:77639470-77639489 Msa0045710:CDS 65.0%
CTCCTTCGCCCCGACGACAA+CGG + chr1_1:77639531-77639550 Msa0045710:CDS 65.0%
! GGAGAATGGCGGGGAGGATG+AGG + chr1_1:77641906-77641925 Msa0045710:CDS 65.0%
GACCGTTGTCGTCGGGGCGA+AGG - chr1_1:77639536-77639555 None:intergenic 70.0%
GGCCTCGTCTGCGAGCCTGA+TGG + chr1_1:77640514-77640533 Msa0045710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77639258 77644304 77639258 ID=Msa0045710;Name=Msa0045710
chr1_1 mRNA 77639258 77644304 77639258 ID=Msa0045710-mRNA-1;Parent=Msa0045710;Name=Msa0045710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=156|1|1|1|0.5|0.6|5|445|1214
chr1_1 exon 77639258 77642428 77639258 ID=Msa0045710-mRNA-1:exon:26559;Parent=Msa0045710-mRNA-1
chr1_1 exon 77642784 77643275 77642784 ID=Msa0045710-mRNA-1:exon:26560;Parent=Msa0045710-mRNA-1
chr1_1 exon 77643530 77643685 77643530 ID=Msa0045710-mRNA-1:exon:26561;Parent=Msa0045710-mRNA-1
chr1_1 exon 77643796 77643865 77643796 ID=Msa0045710-mRNA-1:exon:26562;Parent=Msa0045710-mRNA-1
chr1_1 exon 77643948 77644304 77643948 ID=Msa0045710-mRNA-1:exon:26563;Parent=Msa0045710-mRNA-1
chr1_1 five_prime_UTR 77639258 77639413 77639258 ID=Msa0045710-mRNA-1:five_prime_utr;Parent=Msa0045710-mRNA-1
chr1_1 CDS 77639414 77642428 77639414 ID=Msa0045710-mRNA-1:cds;Parent=Msa0045710-mRNA-1
chr1_1 CDS 77642784 77643275 77642784 ID=Msa0045710-mRNA-1:cds;Parent=Msa0045710-mRNA-1
chr1_1 CDS 77643530 77643667 77643530 ID=Msa0045710-mRNA-1:cds;Parent=Msa0045710-mRNA-1
chr1_1 three_prime_UTR 77643668 77643685 77643668 ID=Msa0045710-mRNA-1:three_prime_utr;Parent=Msa0045710-mRNA-1
chr1_1 three_prime_UTR 77643796 77643865 77643796 ID=Msa0045710-mRNA-1:three_prime_utr;Parent=Msa0045710-mRNA-1
chr1_1 three_prime_UTR 77643948 77644304 77643948 ID=Msa0045710-mRNA-1:three_prime_utr;Parent=Msa0045710-mRNA-1
Gene Sequence

>Msa0045710

ATGTATCTCTACAATCTCACTCTTCAACGACCCACCGGAATCATCTGCGCCATCAACGGCAACTTCTCCGGCGGTAAGGGTCAAGAAATCGTCGTCGCCAGAGGCAAAACCTTAGATCTCCTTCGCCCCGACGACAACGGTCGAATTCAAACCATTCTCTCTGTTGAAGTCTTCGGTGCAATTAGATCCCTAGCTCAGTTTCGTCTCACTGGTGCTCAGAAGGATTTCATCGTTGTCGGTTCCGATTCCGGTAGGATTGTTATTCTTGATTACAACAAAGAGAAAAATGTTTTTGATAAAATTCATCAAGAGACTTTTGGGAAATCTGGTTGCCGGAGAATTGTTCCAGGTGAGTATATTGCTGTAGATCCCAAAGGTAGAGCTGTTATGATTGGTGCTTGTGAAAAACAGAAGCTTGTTTATGTCTTGAATAGAGATACTGCTGCTAGGTTAACTATTTCTTCGCCGTTAGAAGCTCATAAATCACATACTCTTGTGTTTTCAATTTGTGGTGTTGATTGTGGTTTTGAGAATCCTATTTTTGCTGCTATTGAGTTGGATTACTCTGAGGCCGATCAGGATTCGACTGGTATGGCTGCTGCTGAAGCTCAGAAGAATTTGACATTCTATGAGCTTGATTTGGGTCTTAACCATGTTTCGAGAAAGTGGTCTGATCAGGTTGATAATGGTGCTAATTTGCTTGTTACTGTTCCTGGTGGTGCTGATGGACCAAGTGGAGTTCTTGTTTGTGCGGAAAATTTTGTTATATATAAGAATCAGGGGCATCCGGATGTTAGGGCTGTGATTCCCAGACGTGCTGATTTGCCTGCTGAGCGTGGTGTTCTTATTGTTTCTGCTGCTATGCATAAACTGAAGGGTGGGTTCTTTTTCCTTCTGCAGACCGAGTACGGTGATATCTTTAAGGCTACGTTGGAACATGAGGGTGATCGGATTTCTGAATTGAAGATCAAGTATTTTGATACCATTCCTGTTACTTCTTCAATGTGTGTGCTCAAGTCGGGGTTCTTGTTTGCGGCGTCTGAGTTTGGAAACCATGGTCTGTATCAGTTTAAGGGAATAGGGGATGATGATGATGTGGAGGCCTCGTCTGCGAGCCTGATGGAAACTGAAGAGGGTTTTCAGCCTGTGTTTTTCCAGCCCAGGAAACTGAAAAACCTTGTTAGGATTGATCAGGTTGAAAGTTTGATGCCAATTACTGATATGAAGGTCAGCAATCTGTTTGAAGAGGAGACTCCTCAAATTTTTACTCTTTGTGGTCGTGGACCTCGATCTTCTTTGAGGATCTTGAGAACAGGTTTGGCTGTCAGTGAGATGGCAGTTTCCAAGCTTCCCGGTATACCTAGTGCTGTTTGGACTGTGAAGAAGAATGTCATTGATGAGTTTGATGCTTATATCGTTGTGTCGTTCACCAATGCCACCCTTGTGCTTTCCATTGGTGAGACAGTCGAAGAAGTCAGTGACAGTGGGTTTTTGGACACTACTCCCTCCCTTTCGGTTTCTTTGATAGGTGATGATTCTCTCATGCAAGTTCATCCAAACGGTATTAGGCATATCAGGGAGGATGGCCGTATTAATGAGTGGAGAACTCCTGGAAAGAGGACAATTGCAAAAGTTGGGTCGAATAGACTTCAGGTTGTTATTGCTCTAAACGGAGGGGAGCTTATATATTTTGAAGTGGATGTAACTGGTCAATTGATGGAGGTGGAGAAGCATGAAATGTCTGGTGATGTTGCTTGTTTGGACATTGCTCCAGTGCCTGAAGGCAGACAAAGATCCCGTTTTCTTGCTGTTGGCTCATATGACAAGACAATCCGAATCTTATCACTGGATCCTGATGATTGTATGCAGACTCTAGGTATACAGAGTCTTTCTTCAGCTCCAGAATCGCTTCTTTTCCTTGAAGTTCAAGCATCTGTTGGCGGTGAGGATGGGGCAGATCACCCTGCTAGCCTTTTCCTGAACGCTGGTTTGCAGAATGGTGTCCTGTCTAGAACCGTGGTGGATATGGTCACAGGTCTGCTTTCTGATACTCGATCCCGATTCTTAGGATTGAGACCCCCGAAGCTGTTTCCCATTATTGTAAGAGGAAAGCGTGCTATGCTCTGCCTGTCAAGTCGCCCTTGGCTTGGTTACATTCACCAAGGACACTTCCTTTTAACACCCCTTTCATATGAAACCCTTGAATTTGCTGCCTCATTTTCATCTGACCAATGTGTGGAAGGTGTAGTTGCTGTTGCTGGTGAGGCGTTGAGAATTTTTACTATTGAAAGATTAGGAGAAACATTTAACGAGACAGTTATTCCACTTAGATACACGCCTAGGAAATTTGTGCTGCAACCCAAACGGAAACTTTTGGTGGTGATTGAGAGTGATCAAGGAGCATTTACTGCAGAAGAGCGTGAAGCTGCAAGGAAAGAGTGTTTTGAGGCTGCTCAAGCTGGGGAAAATGGGACAGAAAGTGCAGACCAAATGGAGAATGGCGGGGAGGATGAGGATAAAGATGACCCCCTCTCTGATGAGCATTATGGTTATCCAAAAGCTGAATCAGATAAGTGGGCATCCTGCATCAGAATTCTTGATCCCAAAACAGGAAATACAACCTGTCTTTTGGAGCTTCAGGATAATGAGGCTGCATTCAGCGTATGCACAGTAAATTTTCATGATAAAGAATACGGAACTCTTTTAGCCGTTGGCACAGCAAAGGGACTGCAATTTACGCCCAAAAGGAGTTTAACTGCTGGATTTATTCATATATATAGGTTTCTAGAGGATGGAAGATCTCTTGAACTACTTCACAAAACTCAGGTTGAAGGTGTTCCTCTTGCTCTTAGTCAGTTTCAGGGAAGATTACTTGCAGGATTAGGACCTGTTCTCAGGCTATATGATTTGGGAAAAAGACGGTTATTAAGGAAGTGTGAGAATAAGCTATTCCCCAACACAATTGTCTCTATTCAAACCTACCGTGATCGAATTTATGTTGGTGACATTCAAGAGTCTTTCCATTACTGCAAGTATAGACGGGATGAAAACCAACTCTACATATTTGCTGATGATTGCGTTCCAAGATGGCTTACCGCATCATACCACATAGATTTTGACACCATGGCAGGTGCGGACAAGTTTGGAAATATCTATTTTGTGCGGTTGCCGCAGGATGTATCTGATGAGATAGAAGAGGATCCTACTGGTGGGAGGATCAAGTGGGAGCAGGGGAAGCTGAATGGAGCTCCCAATAAGGTGGAAGAAATTGTACAATTTCATGTTGGTGATGTGATCTCATGCCTGCAAAAGGCCTCTCTTATACCAGGTGGTGGAGAGTGCATTTTATATGGAACAGTTATGGGAAGTATTGGAGCATTACATGCTTTTACTTCACGAGATGATGTTGATTTCTTTTCTCATTTGGAGATGCATATGAGGCAGGATAATCCACCTTTGTGTGGAAGAGATCATATGGCTTATAGATCCGCCTATTTTCCTGTTAAGGATGTTATTGATGGGGACCTATGTGAGCAATTCCCAACATTACCAATGGATCTGCAGAGAAAAATTGCTGATGAATTGGACAGGACCCCTGGAGAAATACTGAAGAAACTTGAGGAAGTACGAAATAAGATTATTTAA
Protein sequence

>Msa0045710

MYLYNLTLQRPTGIICAINGNFSGGKGQEIVVARGKTLDLLRPDDNGRIQTILSVEVFGAIRSLAQFRLTGAQKDFIVVGSDSGRIVILDYNKEKNVFDKIHQETFGKSGCRRIVPGEYIAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTLVFSICGVDCGFENPIFAAIELDYSEADQDSTGMAAAEAQKNLTFYELDLGLNHVSRKWSDQVDNGANLLVTVPGGADGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKLKGGFFFLLQTEYGDIFKATLEHEGDRISELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHGLYQFKGIGDDDDVEASSASLMETEEGFQPVFFQPRKLKNLVRIDQVESLMPITDMKVSNLFEEETPQIFTLCGRGPRSSLRILRTGLAVSEMAVSKLPGIPSAVWTVKKNVIDEFDAYIVVSFTNATLVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTIAKVGSNRLQVVIALNGGELIYFEVDVTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDKTIRILSLDPDDCMQTLGIQSLSSAPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLSRTVVDMVTGLLSDTRSRFLGLRPPKLFPIIVRGKRAMLCLSSRPWLGYIHQGHFLLTPLSYETLEFAASFSSDQCVEGVVAVAGEALRIFTIERLGETFNETVIPLRYTPRKFVLQPKRKLLVVIESDQGAFTAEEREAARKECFEAAQAGENGTESADQMENGGEDEDKDDPLSDEHYGYPKAESDKWASCIRILDPKTGNTTCLLELQDNEAAFSVCTVNFHDKEYGTLLAVGTAKGLQFTPKRSLTAGFIHIYRFLEDGRSLELLHKTQVEGVPLALSQFQGRLLAGLGPVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGAPNKVEEIVQFHVGDVISCLQKASLIPGGGECILYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQDNPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII*