Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047120 | sp|Q9LU77|PIN2_ARATH | 74.884 | 649 | 137 | 11 | 1 | 625 | 1 | 647 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047120 | Msa0094510 | 0.891441 | 3.962919e-74 | -8.615850e-47 |
| Msa0047120 | Msa0190670 | 0.811965 | 5.376430e-51 | -8.615850e-47 |
| Msa0047120 | Msa0642600 | 0.810080 | 1.376735e-50 | -8.615850e-47 |
| Msa0047120 | Msa0727480 | 0.800158 | 1.643298e-48 | -8.615850e-47 |
| Msa0047120 | Msa0768720 | 0.804314 | 2.292640e-49 | -8.615850e-47 |
| Msa0047120 | Msa0814160 | 0.806541 | 7.824529e-50 | -8.615850e-47 |
| Msa0047120 | Msa0822410 | 0.813753 | 2.181857e-51 | -8.615850e-47 |
| Msa0047120 | Msa1265840 | 0.938657 | 4.684075e-99 | -8.615850e-47 |
| Msa0047120 | Msa1394340 | 0.976916 | 9.500176e-143 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047120 | MtrunA17_Chr4g0071571 | 98.720 | 625 | 8 | 0 | 1 | 625 | 1 | 625 | 0.0 | 1273 |
| Msa0047120 | MtrunA17_Chr4g0044181 | 57.372 | 685 | 206 | 15 | 1 | 625 | 1 | 659 | 0.0 | 724 |
| Msa0047120 | MtrunA17_Chr6g0478431 | 59.259 | 648 | 197 | 12 | 1 | 625 | 1 | 604 | 0.0 | 720 |
| Msa0047120 | MtrunA17_Chr7g0255941 | 60.601 | 632 | 201 | 11 | 1 | 625 | 1 | 591 | 0.0 | 698 |
| Msa0047120 | MtrunA17_Chr1g0160461 | 58.168 | 655 | 210 | 12 | 1 | 625 | 1 | 621 | 0.0 | 692 |
| Msa0047120 | MtrunA17_Chr8g0393111 | 54.106 | 621 | 155 | 15 | 1 | 595 | 1 | 517 | 0.0 | 590 |
| Msa0047120 | MtrunA17_Chr1g0159341 | 48.336 | 631 | 216 | 20 | 1 | 625 | 1 | 527 | 5.70e-167 | 487 |
| Msa0047120 | MtrunA17_Chr4g0071551 | 95.327 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 3.01e-148 | 427 |
| Msa0047120 | MtrunA17_Chr4g0071561 | 61.316 | 380 | 77 | 7 | 228 | 601 | 1 | 316 | 2.42e-144 | 421 |
| Msa0047120 | MtrunA17_Chr2g0298971 | 40.063 | 639 | 226 | 15 | 1 | 604 | 1 | 517 | 1.59e-131 | 395 |
| Msa0047120 | MtrunA17_Chr7g0216571 | 52.451 | 204 | 87 | 2 | 422 | 625 | 174 | 367 | 2.52e-60 | 205 |
| Msa0047120 | MtrunA17_Chr7g0216571 | 54.658 | 161 | 68 | 2 | 1 | 159 | 12 | 169 | 3.86e-48 | 172 |
| Msa0047120 | MtrunA17_Chr6g0452821 | 52.151 | 186 | 89 | 0 | 440 | 625 | 175 | 360 | 5.65e-59 | 201 |
| Msa0047120 | MtrunA17_Chr6g0452821 | 55.696 | 158 | 70 | 0 | 1 | 158 | 1 | 158 | 4.49e-50 | 177 |
| Msa0047120 | MtrunA17_Chr7g0249141 | 45.918 | 196 | 94 | 2 | 435 | 623 | 169 | 359 | 5.78e-53 | 185 |
| Msa0047120 | MtrunA17_Chr7g0249141 | 49.359 | 156 | 78 | 1 | 1 | 156 | 1 | 155 | 1.08e-47 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047120 | AT5G57090.1 | 74.884 | 649 | 137 | 11 | 1 | 625 | 1 | 647 | 0.0 | 937 |
| Msa0047120 | AT5G57090.2 | 72.761 | 547 | 124 | 10 | 103 | 625 | 2 | 547 | 0.0 | 753 |
| Msa0047120 | AT1G70940.1 | 58.234 | 668 | 208 | 14 | 1 | 625 | 1 | 640 | 0.0 | 706 |
| Msa0047120 | AT1G23080.3 | 59.288 | 646 | 211 | 12 | 1 | 625 | 1 | 615 | 0.0 | 704 |
| Msa0047120 | AT1G23080.4 | 59.288 | 646 | 211 | 12 | 1 | 625 | 1 | 615 | 0.0 | 704 |
| Msa0047120 | AT2G01420.2 | 57.935 | 649 | 216 | 12 | 1 | 625 | 1 | 616 | 0.0 | 702 |
| Msa0047120 | AT2G01420.1 | 58.642 | 648 | 209 | 13 | 1 | 625 | 1 | 612 | 0.0 | 701 |
| Msa0047120 | AT1G23080.1 | 58.769 | 650 | 212 | 12 | 1 | 625 | 1 | 619 | 0.0 | 699 |
| Msa0047120 | AT1G73590.1 | 59.259 | 648 | 215 | 14 | 1 | 625 | 1 | 622 | 0.0 | 688 |
| Msa0047120 | AT1G23080.2 | 55.393 | 547 | 192 | 12 | 1 | 526 | 1 | 516 | 0.0 | 549 |
| Msa0047120 | AT2G01420.3 | 54.364 | 550 | 194 | 12 | 1 | 526 | 1 | 517 | 0.0 | 538 |
| Msa0047120 | AT1G77110.1 | 45.820 | 646 | 253 | 15 | 1 | 625 | 1 | 570 | 1.37e-172 | 503 |
| Msa0047120 | AT1G77110.2 | 44.872 | 624 | 247 | 15 | 1 | 603 | 1 | 548 | 1.03e-159 | 469 |
| Msa0047120 | AT5G15100.1 | 59.877 | 162 | 65 | 0 | 462 | 623 | 204 | 365 | 1.21e-58 | 201 |
| Msa0047120 | AT5G15100.1 | 47.458 | 177 | 84 | 2 | 1 | 173 | 1 | 172 | 3.30e-43 | 159 |
| Msa0047120 | AT5G16530.1 | 53.595 | 153 | 71 | 0 | 471 | 623 | 195 | 347 | 5.54e-52 | 183 |
| Msa0047120 | AT5G16530.1 | 44.878 | 205 | 100 | 3 | 1 | 205 | 1 | 192 | 3.83e-50 | 178 |
| Msa0047120 | AT5G16530.2 | 44.878 | 205 | 100 | 3 | 1 | 205 | 1 | 192 | 1.26e-50 | 178 |
| Msa0047120 | AT5G16530.2 | 52.985 | 134 | 63 | 0 | 471 | 604 | 195 | 328 | 7.04e-44 | 160 |
Find 148 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCAAATCCTATGCTTTC+TGG | 0.083914 | 1_1:+79801837 | Msa0047120:CDS |
| AAAGCTGCTTCTACTGATTT+TGG | 0.151528 | 1_1:+79802002 | Msa0047120:CDS |
| GTGGCGTCATATTATTTAAA+TGG | 0.167054 | 1_1:-79801509 | None:intergenic |
| TCTGACGTTGTTTCGCTTAA+TGG | 0.202697 | 1_1:+79801378 | Msa0047120:CDS |
| GTTATAGAAGCTGCAGTTTC+AGG | 0.222137 | 1_1:-79801339 | None:intergenic |
| GAAATGCCATCTATTGTAAA+AGG | 0.235112 | 1_1:+79802801 | Msa0047120:CDS |
| TTTGGTCTCTTGTATCATTT+AGG | 0.244094 | 1_1:+79802519 | Msa0047120:CDS |
| ATAAGACTTGAGTAGGTATT+AGG | 0.244249 | 1_1:-79802488 | None:intergenic |
| CACCCAGTACTGAGTATATT+TGG | 0.250618 | 1_1:-79803281 | None:intergenic |
| AATACCTACTCAAGTCTTAT+AGG | 0.254018 | 1_1:+79802491 | Msa0047120:CDS |
| TTAAGATTCCCTTCGGAAAT+AGG | 0.258413 | 1_1:-79801966 | None:intergenic |
| TTGTGTTGCAGGGTTATATT+TGG | 0.267057 | 1_1:+79803407 | Msa0047120:intron |
| CTTCCAAGTCCATCTTCTTC+TGG | 0.279820 | 1_1:-79802370 | None:intergenic |
| ATGTGCAACTCCTTGTTATT+AGG | 0.280094 | 1_1:-79801918 | None:intergenic |
| CTATTTGTGTAACCATGTTT+TGG | 0.283244 | 1_1:-79801654 | None:intergenic |
| TTGTTCTGCAAAGTGTTATT+TGG | 0.283570 | 1_1:+79801253 | Msa0047120:CDS |
| CTTCAAACTGATGCTGAAAT+AGG | 0.286348 | 1_1:+79801411 | Msa0047120:CDS |
| TCTTCCTAACACACTTGTTA+TGG | 0.291487 | 1_1:+79801170 | Msa0047120:CDS |
| GATCATTGGAAGATATAAAA+TGG | 0.291739 | 1_1:-79801008 | None:intergenic |
| ATCTTCTTCTGGCTAATATA+TGG | 0.325305 | 1_1:-79802359 | None:intergenic |
| ATACTCTACTATGTGCTTCT+TGG | 0.327447 | 1_1:+79803455 | Msa0047120:CDS |
| AAGATATTGAATTCTATTAG+AGG | 0.331499 | 1_1:+79803569 | Msa0047120:three_prime_UTR |
| CTTACATGTTGCAATTGTTC+AGG | 0.334263 | 1_1:+79803093 | Msa0047120:CDS |
| TGGATGGAGATTGTATTCTT+TGG | 0.334269 | 1_1:-79803261 | None:intergenic |
| CTTCCTAACACACTTGTTAT+GGG | 0.344721 | 1_1:+79801171 | Msa0047120:CDS |
| CACATAGTAGAGTATTGTTA+TGG | 0.345910 | 1_1:-79803447 | None:intergenic |
| TGAATATGCAGGTCTGTTCA+TGG | 0.369728 | 1_1:+79802946 | Msa0047120:intron |
| GAACCAGAAAGCATAGGATT+TGG | 0.370922 | 1_1:-79801840 | None:intergenic |
| AAGATCAACTACTAACTCTA+TGG | 0.372841 | 1_1:+79801464 | Msa0047120:CDS |
| TCTTGGAGTATAATCTATCT+TGG | 0.373259 | 1_1:+79803472 | Msa0047120:exon |
| GACTCATCCTTATCATGGTT+TGG | 0.377147 | 1_1:+79802447 | Msa0047120:CDS |
| GATAGCATGGGTGGTGGAAA+TGG | 0.382932 | 1_1:+79801888 | Msa0047120:CDS |
| CAAGTCTTATAGGACTTGTT+TGG | 0.388260 | 1_1:+79802501 | Msa0047120:CDS |
| AGGAGTTGCACATGTTTGTT+TGG | 0.388483 | 1_1:+79801928 | Msa0047120:CDS |
| ACTACTAACTCTATGGTATC+TGG | 0.400134 | 1_1:+79801471 | Msa0047120:CDS |
| TGGCGTCATATTATTTAAAT+GGG | 0.400508 | 1_1:-79801508 | None:intergenic |
| AGATGGACTTGGAAGGAGGA+GGG | 0.406669 | 1_1:+79802378 | Msa0047120:CDS |
| TTCACACCAGATCAATGTTC+TGG | 0.419637 | 1_1:+79800940 | Msa0047120:CDS |
| ATTCCCATAACAAGTGTGTT+AGG | 0.421389 | 1_1:-79801174 | None:intergenic |
| ATTCATAGCATAAGGATCAT+TGG | 0.433457 | 1_1:-79801022 | None:intergenic |
| TGCATAAGAAGAGGGGAGGG+AGG | 0.434830 | 1_1:+79801772 | Msa0047120:CDS |
| CATCCAAATATACTCAGTAC+TGG | 0.436602 | 1_1:+79803278 | Msa0047120:CDS |
| ATACTGTCTGATGCTGGTCT+TGG | 0.436774 | 1_1:+79802834 | Msa0047120:CDS |
| AGTCTTGTCATAACACTTGC+TGG | 0.442208 | 1_1:-79802428 | None:intergenic |
| CACAAAGGGAACAATACCTT+GGG | 0.446341 | 1_1:-79803234 | None:intergenic |
| GACAAGACTCATCCTTATCA+TGG | 0.446845 | 1_1:+79802442 | Msa0047120:CDS |
| TGTGTTAGGAAGAGTTGAAA+GGG | 0.446908 | 1_1:-79801160 | None:intergenic |
| AAAACCAAGATAGTCTTGAT+TGG | 0.448110 | 1_1:+79801121 | Msa0047120:CDS |
| AGTCCTCGGAGTAGCCCCTT+TGG | 0.453442 | 1_1:-79801721 | None:intergenic |
| AAACTAGATCCTCTTGGAGT+TGG | 0.454124 | 1_1:-79801585 | None:intergenic |
| CTATCTATAACCATGATTAC+CGG | 0.459673 | 1_1:+79800829 | None:intergenic |
| AAGATGGACTTGGAAGGAGG+AGG | 0.460717 | 1_1:+79802377 | Msa0047120:CDS |
| ACGCATACCAATTGCTATTG+AGG | 0.461284 | 1_1:-79803062 | None:intergenic |
| GTGAATCAGCTGCTAAGAAA+TGG | 0.462800 | 1_1:-79801047 | None:intergenic |
| CTTTCTGGTTCTACAAGTGC+TGG | 0.462832 | 1_1:+79801852 | Msa0047120:CDS |
| AAATGGTAATTCATAGCATA+AGG | 0.463466 | 1_1:-79801030 | None:intergenic |
| TTTCCACATGCAATCAGCTT+AGG | 0.466851 | 1_1:-79802977 | None:intergenic |
| AGTGGTGAGTTGTTCAATAA+TGG | 0.467127 | 1_1:+79801801 | Msa0047120:CDS |
| CGGCGCTTTACTTTGAAACA+TGG | 0.467403 | 1_1:-79801628 | None:intergenic |
| TGCATGTTTAAGATTCCCTT+CGG | 0.467611 | 1_1:-79801973 | None:intergenic |
| ATTCTATGCAATCTTCCAAA+GGG | 0.470349 | 1_1:+79801706 | Msa0047120:CDS |
| TAGTCCAATCAAGACTATCT+TGG | 0.470572 | 1_1:-79801125 | None:intergenic |
| ATCTCAATACTGTCTGATGC+TGG | 0.484824 | 1_1:+79802828 | Msa0047120:CDS |
| GATGGACTTGGAAGGAGGAG+GGG | 0.487071 | 1_1:+79802379 | Msa0047120:CDS |
| GCGGCAACCTCAATAGCAAT+TGG | 0.493077 | 1_1:+79803055 | Msa0047120:CDS |
| TCTTCGAAATTTGAAGTCCT+CGG | 0.493160 | 1_1:-79801735 | None:intergenic |
| ACATAGTAGAGTATTGTTAT+GGG | 0.493323 | 1_1:-79803446 | None:intergenic |
| ATTTCAACATCCCTTTGTCT+AGG | 0.495176 | 1_1:-79802317 | None:intergenic |
| ATTATGATGATGTGGCTTCA+AGG | 0.495568 | 1_1:+79803505 | Msa0047120:three_prime_UTR |
| GAGGTTGCCGCAATCACAGC+TGG | 0.497964 | 1_1:-79803043 | None:intergenic |
| ACAAAGGGATGTTGAAATTG+AGG | 0.498259 | 1_1:+79802322 | Msa0047120:CDS |
| TTTATACCAGAACATTGATC+TGG | 0.498746 | 1_1:-79800946 | None:intergenic |
| GTGTGTTAGGAAGAGTTGAA+AGG | 0.500046 | 1_1:-79801161 | None:intergenic |
| TGCCGCAATCACAGCTGGAC+CGG | 0.500587 | 1_1:-79803038 | None:intergenic |
| TATTCTTTGGCAAACACAAA+GGG | 0.501329 | 1_1:-79803248 | None:intergenic |
| CCAGAAAGCATAGGATTTGG+AGG | 0.501646 | 1_1:-79801837 | None:intergenic |
| TGGTTAAAACTAGATCCTCT+TGG | 0.501747 | 1_1:-79801591 | None:intergenic |
| CATACGGTTCAGTTCGTTGG+TGG | 0.502544 | 1_1:+79800911 | Msa0047120:CDS |
| GAAAATACCGTTGCATCAAA+AGG | 0.506036 | 1_1:+79802056 | Msa0047120:CDS |
| ATATATTAGCCAGAAGAAGA+TGG | 0.507802 | 1_1:+79802361 | Msa0047120:CDS |
| TATATCCTTACCGGTAATCA+TGG | 0.512246 | 1_1:-79800839 | None:intergenic |
| CCACGAGCTTCAAATCTAAC+CGG | 0.512403 | 1_1:+79801528 | Msa0047120:CDS |
| GGTTCATTCAAACAGATGAA+TGG | 0.513821 | 1_1:+79803527 | Msa0047120:three_prime_UTR |
| TAGCATACGGTTCAGTTCGT+TGG | 0.514377 | 1_1:+79800908 | Msa0047120:CDS |
| GGATGCATAAGAAGAGGGGA+GGG | 0.515503 | 1_1:+79801769 | Msa0047120:CDS |
| TTATGATGATGTGGCTTCAA+GGG | 0.517205 | 1_1:+79803506 | Msa0047120:three_prime_UTR |
| CACAAAGAAGAAAGATAGCA+TGG | 0.528645 | 1_1:+79801875 | Msa0047120:CDS |
| GTCTGATGCTGGTCTTGGAA+TGG | 0.532632 | 1_1:+79802839 | Msa0047120:CDS |
| TATTCTATGCAATCTTCCAA+AGG | 0.533077 | 1_1:+79801705 | Msa0047120:CDS |
| TAGCCAGAAGAAGATGGACT+TGG | 0.535792 | 1_1:+79802367 | Msa0047120:CDS |
| ATGGGTGGTGGAAATGGTAA+TGG | 0.538764 | 1_1:+79801894 | Msa0047120:CDS |
| AGGATGCATAAGAAGAGGGG+AGG | 0.538999 | 1_1:+79801768 | Msa0047120:CDS |
| AACATCGTATATATCCTTAC+CGG | 0.540847 | 1_1:-79800848 | None:intergenic |
| GCTATGTATGGTGATTTCTC+AGG | 0.545619 | 1_1:+79801210 | Msa0047120:CDS |
| AGGGGAGGGAGGAGTATGAG+TGG | 0.545646 | 1_1:+79801783 | Msa0047120:CDS |
| TCATGTGGAACATATTTGGA+AGG | 0.549434 | 1_1:-79802035 | None:intergenic |
| TATAACCATGATTACCGGTA+AGG | 0.552385 | 1_1:+79800834 | None:intergenic |
| AAGAAAGATAGCATGGGTGG+TGG | 0.552901 | 1_1:+79801882 | Msa0047120:CDS |
| GAACATGAGTCCTAGACAAA+GGG | 0.557185 | 1_1:+79802307 | Msa0047120:CDS |
| ACACAAAGGGAACAATACCT+TGG | 0.558237 | 1_1:-79803235 | None:intergenic |
| ATTTCAGCATCAGTTTGAAG+TGG | 0.563565 | 1_1:-79801408 | None:intergenic |
| ATTGAGGATGCATAAGAAGA+GGG | 0.564904 | 1_1:+79801764 | Msa0047120:CDS |
| AGTGCTTCACCTATTTCCGA+AGG | 0.569824 | 1_1:+79801957 | Msa0047120:CDS |
| GACCGGTCCAGCTGTGATTG+CGG | 0.570068 | 1_1:+79803036 | Msa0047120:CDS |
| ATAAAATGGAAAGATAGTAA+TGG | 0.571283 | 1_1:-79800994 | None:intergenic |
| GGAATGGCCATGTTCAGTCT+AGG | 0.576547 | 1_1:+79802855 | Msa0047120:CDS |
| AAGTCCTATAAGACTTGAGT+AGG | 0.579378 | 1_1:-79802495 | None:intergenic |
| ATGGCTGTAAGGTTCTTGAC+CGG | 0.579568 | 1_1:+79803019 | Msa0047120:CDS |
| GAAAGCATAGGATTTGGAGG+AGG | 0.582023 | 1_1:-79801834 | None:intergenic |
| ATTTCGAAGATGAGACATTG+AGG | 0.583231 | 1_1:+79801748 | Msa0047120:CDS |
| AGCATCAGACAGTATTGAGA+TGG | 0.585685 | 1_1:-79802826 | None:intergenic |
| CATACATAGCTCTTAAAAGA+GGG | 0.587601 | 1_1:-79801197 | None:intergenic |
| GTATTCTTTGGCAAACACAA+AGG | 0.589188 | 1_1:-79803249 | None:intergenic |
| CCATACATAGCTCTTAAAAG+AGG | 0.589751 | 1_1:-79801198 | None:intergenic |
| GTTGCTATGATATTAGCATA+CGG | 0.591499 | 1_1:+79800895 | Msa0047120:CDS |
| CATTCAAACAGATGAATGGA+AGG | 0.591798 | 1_1:+79803531 | Msa0047120:three_prime_UTR |
| TCAATAGCAATTGGTATGCG+TGG | 0.591915 | 1_1:+79803064 | Msa0047120:CDS |
| CATTGAGGATGCATAAGAAG+AGG | 0.595513 | 1_1:+79801763 | Msa0047120:CDS |
| ATCCAAATATACTCAGTACT+GGG | 0.597499 | 1_1:+79803279 | Msa0047120:CDS |
| CAGTACTGAGTATATTTGGA+TGG | 0.598102 | 1_1:-79803277 | None:intergenic |
| CAGCCTAAGCTGATTGCATG+TGG | 0.600231 | 1_1:+79802974 | Msa0047120:CDS |
| CCGGTTAGATTTGAAGCTCG+TGG | 0.602636 | 1_1:-79801528 | None:intergenic |
| AAAGCATAGGATTTGGAGGA+GGG | 0.604256 | 1_1:-79801833 | None:intergenic |
| AGAACATGAGTCCTAGACAA+AGG | 0.609263 | 1_1:+79802306 | Msa0047120:CDS |
| CAGAAGAAGATGGACTTGGA+AGG | 0.618184 | 1_1:+79802371 | Msa0047120:CDS |
| AAGAAGATGGACTTGGAAGG+AGG | 0.619267 | 1_1:+79802374 | Msa0047120:CDS |
| GCAAATCAATTATGATGATG+TGG | 0.621632 | 1_1:+79803497 | Msa0047120:three_prime_UTR |
| TTGCAGGCTGCACTTCCCCA+AGG | 0.623512 | 1_1:+79803218 | Msa0047120:intron |
| TGATTTCTCAGGAAATCTCA+TGG | 0.626161 | 1_1:+79801221 | Msa0047120:CDS |
| CTTGTAGAACCAGAAAGCAT+AGG | 0.628500 | 1_1:-79801846 | None:intergenic |
| GATGCTGAAATAGGTGAGGA+TGG | 0.629252 | 1_1:+79801420 | Msa0047120:CDS |
| ACAAGTACCTAGACTGAACA+TGG | 0.632685 | 1_1:-79802862 | None:intergenic |
| GGTGAGTTGTTCAATAATGG+TGG | 0.635458 | 1_1:+79801804 | Msa0047120:CDS |
| TCAAGAGAACCAACTCCAAG+AGG | 0.636626 | 1_1:+79801576 | Msa0047120:CDS |
| TTCTATGCAATCTTCCAAAG+GGG | 0.639413 | 1_1:+79801707 | Msa0047120:CDS |
| GGATGGTAAACTTCATGTTG+TGG | 0.641471 | 1_1:+79801437 | Msa0047120:CDS |
| GTGCTTCACCTATTTCCGAA+GGG | 0.647728 | 1_1:+79801958 | Msa0047120:CDS |
| AACTGATGCTGAAATAGGTG+AGG | 0.662294 | 1_1:+79801416 | Msa0047120:CDS |
| AAGAAGAAAGATAGCATGGG+TGG | 0.662615 | 1_1:+79801879 | Msa0047120:CDS |
| TGGTAATGGACCTAATAACA+AGG | 0.666402 | 1_1:+79801908 | Msa0047120:CDS |
| ACAAAGAAGAAAGATAGCAT+GGG | 0.672441 | 1_1:+79801876 | Msa0047120:CDS |
| TTGAGGATGCATAAGAAGAG+GGG | 0.674550 | 1_1:+79801765 | Msa0047120:CDS |
| CTTCCAAAGGGGCTACTCCG+AGG | 0.679174 | 1_1:+79801718 | Msa0047120:CDS |
| AAAGCGCCGAGTCCAAAACA+TGG | 0.682082 | 1_1:+79801642 | Msa0047120:CDS |
| AACAGAATATATCTCAACAC+CGG | 0.682527 | 1_1:-79801547 | None:intergenic |
| AATATCATAGCAACATACAG+TGG | 0.685927 | 1_1:-79800886 | None:intergenic |
| CTTGTCATAACACTTGCTGG+AGG | 0.701230 | 1_1:-79802425 | None:intergenic |
| ACAAAGGGAACAATACCTTG+GGG | 0.771870 | 1_1:-79803233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGCTTATATTTAAAAAA+CGG | - | chr1_1:79802606-79802625 | None:intergenic | 10.0% |
| !!! | TGAAAGTTGATATATTTATA+GGG | - | chr1_1:79802174-79802193 | None:intergenic | 15.0% |
| !!! | TTGAAAGTTGATATATTTAT+AGG | - | chr1_1:79802175-79802194 | None:intergenic | 15.0% |
| !!! | TAATAGATTGAAGATTTTTT+TGG | - | chr1_1:79802569-79802588 | None:intergenic | 15.0% |
| !!! | ATTTTGCTTATATTTAGAAA+CGG | + | chr1_1:79802714-79802733 | Msa0047120:intron | 15.0% |
| !!! | AATGTTTAATTTTAATTTGC+AGG | + | chr1_1:79803202-79803221 | Msa0047120:intron | 15.0% |
| !! | TGAAATACTAAAAAAGAATT+TGG | + | chr1_1:79803381-79803400 | Msa0047120:intron | 15.0% |
| !! | ATAAAATGGAAAGATAGTAA+TGG | - | chr1_1:79800997-79801016 | None:intergenic | 20.0% |
| !!! | ACAAATAGTTTTCAAAGTAA+TGG | + | chr1_1:79801669-79801688 | Msa0047120:CDS | 20.0% |
| !!! | ATAAGCAAAATTGACTTTTT+AGG | + | chr1_1:79802616-79802635 | Msa0047120:intron | 20.0% |
| !! | CATTCATTTAATGATGTATT+TGG | + | chr1_1:79802641-79802660 | Msa0047120:intron | 20.0% |
| !!! | ATATTCTCCTAAGAAATTTT+TGG | + | chr1_1:79802898-79802917 | Msa0047120:intron | 20.0% |
| !! | AATTAAGCCAAAAATTTCTT+AGG | - | chr1_1:79802908-79802927 | None:intergenic | 20.0% |
| !!! | ATAATCATTTTTGAATATGC+AGG | + | chr1_1:79802935-79802954 | Msa0047120:intron | 20.0% |
| !! | CAACTAATTAGAATTAATAG+GGG | - | chr1_1:79803168-79803187 | None:intergenic | 20.0% |
| !! | GCAACTAATTAGAATTAATA+GGG | - | chr1_1:79803169-79803188 | None:intergenic | 20.0% |
| !! | AGCAACTAATTAGAATTAAT+AGG | - | chr1_1:79803170-79803189 | None:intergenic | 20.0% |
| !! | AAGATATTGAATTCTATTAG+AGG | + | chr1_1:79803569-79803588 | Msa0047120:three_prime_UTR | 20.0% |
| !!! | ATTTTGATTCAAATGAAAGT+TGG | + | chr1_1:79803643-79803662 | Msa0047120:three_prime_UTR | 20.0% |
| !!! | TTTTGATTCAAATGAAAGTT+GGG | + | chr1_1:79803644-79803663 | Msa0047120:three_prime_UTR | 20.0% |
| ! | GATCATTGGAAGATATAAAA+TGG | - | chr1_1:79801011-79801030 | None:intergenic | 25.0% |
| ! | AAATGGTAATTCATAGCATA+AGG | - | chr1_1:79801033-79801052 | None:intergenic | 25.0% |
| ! | TGGCGTCATATTATTTAAAT+GGG | - | chr1_1:79801511-79801530 | None:intergenic | 25.0% |
| !! | AGTTTTCAAAGTAATGGTAA+TGG | + | chr1_1:79801675-79801694 | Msa0047120:CDS | 25.0% |
| !! | ATTTTCATGTGGAACATATT+TGG | - | chr1_1:79802042-79802061 | None:intergenic | 25.0% |
| !! | TTTAATACCTTTTGATGCAA+CGG | - | chr1_1:79802066-79802085 | None:intergenic | 25.0% |
| !!! | TTGAAGATTTTTTTGGAGAT+TGG | - | chr1_1:79802562-79802581 | None:intergenic | 25.0% |
| ! | TGCTTATATTTAAAAAACGG+AGG | - | chr1_1:79802603-79802622 | None:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr1_1:79802680-79802699 | None:intergenic | 25.0% |
| ! | TTCTTAGGAGAATATAATGT+TGG | - | chr1_1:79802893-79802912 | None:intergenic | 25.0% |
| !!! | ACATAGTAGAGTATTGTTAT+GGG | - | chr1_1:79803449-79803468 | None:intergenic | 25.0% |
| AACATCGTATATATCCTTAC+CGG | - | chr1_1:79800851-79800870 | None:intergenic | 30.0% | |
| AATATCATAGCAACATACAG+TGG | - | chr1_1:79800889-79800908 | None:intergenic | 30.0% | |
| GTTGCTATGATATTAGCATA+CGG | + | chr1_1:79800895-79800914 | Msa0047120:CDS | 30.0% | |
| TTTATACCAGAACATTGATC+TGG | - | chr1_1:79800949-79800968 | None:intergenic | 30.0% | |
| ATTCATAGCATAAGGATCAT+TGG | - | chr1_1:79801025-79801044 | None:intergenic | 30.0% | |
| CTTCAAAAAGTAGTTATCCT+TGG | + | chr1_1:79801069-79801088 | Msa0047120:CDS | 30.0% | |
| ! | AAAACCAAGATAGTCTTGAT+TGG | + | chr1_1:79801121-79801140 | Msa0047120:CDS | 30.0% |
| CATACATAGCTCTTAAAAGA+GGG | - | chr1_1:79801200-79801219 | None:intergenic | 30.0% | |
| ! | TTGTTCTGCAAAGTGTTATT+TGG | + | chr1_1:79801253-79801272 | Msa0047120:CDS | 30.0% |
| AAGATCAACTACTAACTCTA+TGG | + | chr1_1:79801464-79801483 | Msa0047120:CDS | 30.0% | |
| GTGGCGTCATATTATTTAAA+TGG | - | chr1_1:79801512-79801531 | None:intergenic | 30.0% | |
| AACAGAATATATCTCAACAC+CGG | - | chr1_1:79801550-79801569 | None:intergenic | 30.0% | |
| ACATGGCATAAAAATCAGTT+TGG | - | chr1_1:79801614-79801633 | None:intergenic | 30.0% | |
| ! | CTATTTGTGTAACCATGTTT+TGG | - | chr1_1:79801657-79801676 | None:intergenic | 30.0% |
| TATTCTATGCAATCTTCCAA+AGG | + | chr1_1:79801705-79801724 | Msa0047120:CDS | 30.0% | |
| ATTCTATGCAATCTTCCAAA+GGG | + | chr1_1:79801706-79801725 | Msa0047120:CDS | 30.0% | |
| ACAAAGAAGAAAGATAGCAT+GGG | + | chr1_1:79801876-79801895 | Msa0047120:CDS | 30.0% | |
| ! | ATCTTCTTCTGGCTAATATA+TGG | - | chr1_1:79802362-79802381 | None:intergenic | 30.0% |
| ATATATTAGCCAGAAGAAGA+TGG | + | chr1_1:79802361-79802380 | Msa0047120:CDS | 30.0% | |
| ATAAGACTTGAGTAGGTATT+AGG | - | chr1_1:79802491-79802510 | None:intergenic | 30.0% | |
| ! | AATACCTACTCAAGTCTTAT+AGG | + | chr1_1:79802491-79802510 | Msa0047120:CDS | 30.0% |
| TTTGGTCTCTTGTATCATTT+AGG | + | chr1_1:79802519-79802538 | Msa0047120:CDS | 30.0% | |
| TTGCTTATATTTAGAAACGG+AGG | + | chr1_1:79802717-79802736 | Msa0047120:intron | 30.0% | |
| TGCTTATATTTAGAAACGGA+GGG | + | chr1_1:79802718-79802737 | Msa0047120:intron | 30.0% | |
| GAAATGCCATCTATTGTAAA+AGG | + | chr1_1:79802801-79802820 | Msa0047120:CDS | 30.0% | |
| ! | ATGGAACCTTTTACAATAGA+TGG | - | chr1_1:79802810-79802829 | None:intergenic | 30.0% |
| TATTCTTTGGCAAACACAAA+GGG | - | chr1_1:79803251-79803270 | None:intergenic | 30.0% | |
| ATCCAAATATACTCAGTACT+GGG | + | chr1_1:79803279-79803298 | Msa0047120:CDS | 30.0% | |
| ATTGCAAGTGATTAAGTATG+TGG | + | chr1_1:79803352-79803371 | Msa0047120:intron | 30.0% | |
| AATTTGGTATTTGTGTTGCA+GGG | + | chr1_1:79803397-79803416 | Msa0047120:intron | 30.0% | |
| !! | CACATAGTAGAGTATTGTTA+TGG | - | chr1_1:79803450-79803469 | None:intergenic | 30.0% |
| TCTTGGAGTATAATCTATCT+TGG | + | chr1_1:79803472-79803491 | Msa0047120:exon | 30.0% | |
| ! | GCAAATCAATTATGATGATG+TGG | + | chr1_1:79803497-79803516 | Msa0047120:three_prime_UTR | 30.0% |
| !!! | TCCTTGGTGCTCTTTTTATA+TGG | + | chr1_1:79801085-79801104 | Msa0047120:CDS | 35.0% |
| !! | TCCATATAAAAAGAGCACCA+AGG | - | chr1_1:79801089-79801108 | None:intergenic | 35.0% |
| TAGTCCAATCAAGACTATCT+TGG | - | chr1_1:79801128-79801147 | None:intergenic | 35.0% | |
| TGTGTTAGGAAGAGTTGAAA+GGG | - | chr1_1:79801163-79801182 | None:intergenic | 35.0% | |
| ! | TCTTCCTAACACACTTGTTA+TGG | + | chr1_1:79801170-79801189 | Msa0047120:CDS | 35.0% |
| !! | CTTCCTAACACACTTGTTAT+GGG | + | chr1_1:79801171-79801190 | Msa0047120:CDS | 35.0% |
| ATTCCCATAACAAGTGTGTT+AGG | - | chr1_1:79801177-79801196 | None:intergenic | 35.0% | |
| CCATACATAGCTCTTAAAAG+AGG | - | chr1_1:79801201-79801220 | None:intergenic | 35.0% | |
| !! | CCTCTTTTAAGAGCTATGTA+TGG | + | chr1_1:79801198-79801217 | Msa0047120:CDS | 35.0% |
| TGATTTCTCAGGAAATCTCA+TGG | + | chr1_1:79801221-79801240 | Msa0047120:CDS | 35.0% | |
| ATTTCAGCATCAGTTTGAAG+TGG | - | chr1_1:79801411-79801430 | None:intergenic | 35.0% | |
| CTTCAAACTGATGCTGAAAT+AGG | + | chr1_1:79801411-79801430 | Msa0047120:CDS | 35.0% | |
| ACTACTAACTCTATGGTATC+TGG | + | chr1_1:79801471-79801490 | Msa0047120:CDS | 35.0% | |
| TGGTTAAAACTAGATCCTCT+TGG | - | chr1_1:79801594-79801613 | None:intergenic | 35.0% | |
| TTCTATGCAATCTTCCAAAG+GGG | + | chr1_1:79801707-79801726 | Msa0047120:CDS | 35.0% | |
| ! | TCTTCGAAATTTGAAGTCCT+CGG | - | chr1_1:79801738-79801757 | None:intergenic | 35.0% |
| ATTTCGAAGATGAGACATTG+AGG | + | chr1_1:79801748-79801767 | Msa0047120:CDS | 35.0% | |
| ATTGAGGATGCATAAGAAGA+GGG | + | chr1_1:79801764-79801783 | Msa0047120:CDS | 35.0% | |
| AGTGGTGAGTTGTTCAATAA+TGG | + | chr1_1:79801801-79801820 | Msa0047120:CDS | 35.0% | |
| CACAAAGAAGAAAGATAGCA+TGG | + | chr1_1:79801875-79801894 | Msa0047120:CDS | 35.0% | |
| !! | TGGTAATGGACCTAATAACA+AGG | + | chr1_1:79801908-79801927 | Msa0047120:CDS | 35.0% |
| !! | ATGTGCAACTCCTTGTTATT+AGG | - | chr1_1:79801921-79801940 | None:intergenic | 35.0% |
| TTAAGATTCCCTTCGGAAAT+AGG | - | chr1_1:79801969-79801988 | None:intergenic | 35.0% | |
| ! | TGCATGTTTAAGATTCCCTT+CGG | - | chr1_1:79801976-79801995 | None:intergenic | 35.0% |
| !!! | AAAGCTGCTTCTACTGATTT+TGG | + | chr1_1:79802002-79802021 | Msa0047120:CDS | 35.0% |
| TCATGTGGAACATATTTGGA+AGG | - | chr1_1:79802038-79802057 | None:intergenic | 35.0% | |
| GAAAATACCGTTGCATCAAA+AGG | + | chr1_1:79802056-79802075 | Msa0047120:CDS | 35.0% | |
| ACGCTAGATTATATAGAACG+AGG | - | chr1_1:79802135-79802154 | None:intergenic | 35.0% | |
| AGATCATGTACAAGATTGCA+CGG | - | chr1_1:79802231-79802250 | None:intergenic | 35.0% | |
| ATTTCAACATCCCTTTGTCT+AGG | - | chr1_1:79802320-79802339 | None:intergenic | 35.0% | |
| ACAAAGGGATGTTGAAATTG+AGG | + | chr1_1:79802322-79802341 | Msa0047120:CDS | 35.0% | |
| ! | GTTTTCTCCAAACCATGATA+AGG | - | chr1_1:79802457-79802476 | None:intergenic | 35.0% |
| AAGTCCTATAAGACTTGAGT+AGG | - | chr1_1:79802498-79802517 | None:intergenic | 35.0% | |
| ! | CAAGTCTTATAGGACTTGTT+TGG | + | chr1_1:79802501-79802520 | Msa0047120:CDS | 35.0% |
| CAGTTAAGGATTCATGATCA+AGG | - | chr1_1:79802749-79802768 | None:intergenic | 35.0% | |
| ATGCACATCATTAGCAGTTA+AGG | - | chr1_1:79802763-79802782 | None:intergenic | 35.0% | |
| ! | ACGAGTTGCAACATTTTCTA+TGG | + | chr1_1:79803000-79803019 | Msa0047120:CDS | 35.0% |
| ! | CAACATTTTCTATGGCTGTA+AGG | + | chr1_1:79803008-79803027 | Msa0047120:CDS | 35.0% |
| CTTACATGTTGCAATTGTTC+AGG | + | chr1_1:79803093-79803112 | Msa0047120:CDS | 35.0% | |
| GTATTCTTTGGCAAACACAA+AGG | - | chr1_1:79803252-79803271 | None:intergenic | 35.0% | |
| TGGATGGAGATTGTATTCTT+TGG | - | chr1_1:79803264-79803283 | None:intergenic | 35.0% | |
| ! | CAGTACTGAGTATATTTGGA+TGG | - | chr1_1:79803280-79803299 | None:intergenic | 35.0% |
| CATCCAAATATACTCAGTAC+TGG | + | chr1_1:79803278-79803297 | Msa0047120:CDS | 35.0% | |
| GAATTTGGTATTTGTGTTGC+AGG | + | chr1_1:79803396-79803415 | Msa0047120:intron | 35.0% | |
| TTGTGTTGCAGGGTTATATT+TGG | + | chr1_1:79803407-79803426 | Msa0047120:intron | 35.0% | |
| ATACTCTACTATGTGCTTCT+TGG | + | chr1_1:79803455-79803474 | Msa0047120:CDS | 35.0% | |
| ! | ATTATGATGATGTGGCTTCA+AGG | + | chr1_1:79803505-79803524 | Msa0047120:three_prime_UTR | 35.0% |
| ! | TTATGATGATGTGGCTTCAA+GGG | + | chr1_1:79803506-79803525 | Msa0047120:three_prime_UTR | 35.0% |
| GGTTCATTCAAACAGATGAA+TGG | + | chr1_1:79803527-79803546 | Msa0047120:three_prime_UTR | 35.0% | |
| CATTCAAACAGATGAATGGA+AGG | + | chr1_1:79803531-79803550 | Msa0047120:three_prime_UTR | 35.0% | |
| TTCACACCAGATCAATGTTC+TGG | + | chr1_1:79800940-79800959 | Msa0047120:CDS | 40.0% | |
| CTGCAAAAACAGCGACAAAA+CGG | - | chr1_1:79800972-79800991 | None:intergenic | 40.0% | |
| GTGAATCAGCTGCTAAGAAA+TGG | - | chr1_1:79801050-79801069 | None:intergenic | 40.0% | |
| GTGTGTTAGGAAGAGTTGAA+AGG | - | chr1_1:79801164-79801183 | None:intergenic | 40.0% | |
| GCTATGTATGGTGATTTCTC+AGG | + | chr1_1:79801210-79801229 | Msa0047120:CDS | 40.0% | |
| GTTATAGAAGCTGCAGTTTC+AGG | - | chr1_1:79801342-79801361 | None:intergenic | 40.0% | |
| ! | TCTGACGTTGTTTCGCTTAA+TGG | + | chr1_1:79801378-79801397 | Msa0047120:CDS | 40.0% |
| AACTGATGCTGAAATAGGTG+AGG | + | chr1_1:79801416-79801435 | Msa0047120:CDS | 40.0% | |
| GGATGGTAAACTTCATGTTG+TGG | + | chr1_1:79801437-79801456 | Msa0047120:CDS | 40.0% | |
| AAACTAGATCCTCTTGGAGT+TGG | - | chr1_1:79801588-79801607 | None:intergenic | 40.0% | |
| !! | GTGTAACCATGTTTTGGACT+CGG | - | chr1_1:79801651-79801670 | None:intergenic | 40.0% |
| CATTGAGGATGCATAAGAAG+AGG | + | chr1_1:79801763-79801782 | Msa0047120:CDS | 40.0% | |
| TTGAGGATGCATAAGAAGAG+GGG | + | chr1_1:79801765-79801784 | Msa0047120:CDS | 40.0% | |
| GGTGAGTTGTTCAATAATGG+TGG | + | chr1_1:79801804-79801823 | Msa0047120:CDS | 40.0% | |
| AAAGCATAGGATTTGGAGGA+GGG | - | chr1_1:79801836-79801855 | None:intergenic | 40.0% | |
| ! | GAACCAGAAAGCATAGGATT+TGG | - | chr1_1:79801843-79801862 | None:intergenic | 40.0% |
| ! | CTTGTAGAACCAGAAAGCAT+AGG | - | chr1_1:79801849-79801868 | None:intergenic | 40.0% |
| AAGAAGAAAGATAGCATGGG+TGG | + | chr1_1:79801879-79801898 | Msa0047120:CDS | 40.0% | |
| AGGAGTTGCACATGTTTGTT+TGG | + | chr1_1:79801928-79801947 | Msa0047120:CDS | 40.0% | |
| ! | GATGCAACGGTATTTTCATG+TGG | - | chr1_1:79802053-79802072 | None:intergenic | 40.0% |
| AGAACATGAGTCCTAGACAA+AGG | + | chr1_1:79802306-79802325 | Msa0047120:CDS | 40.0% | |
| GAACATGAGTCCTAGACAAA+GGG | + | chr1_1:79802307-79802326 | Msa0047120:CDS | 40.0% | |
| ! | AGTCTTGTCATAACACTTGC+TGG | - | chr1_1:79802431-79802450 | None:intergenic | 40.0% |
| GACAAGACTCATCCTTATCA+TGG | + | chr1_1:79802442-79802461 | Msa0047120:CDS | 40.0% | |
| GACTCATCCTTATCATGGTT+TGG | + | chr1_1:79802447-79802466 | Msa0047120:CDS | 40.0% | |
| ! | AGCATCAGACAGTATTGAGA+TGG | - | chr1_1:79802829-79802848 | None:intergenic | 40.0% |
| ATCTCAATACTGTCTGATGC+TGG | + | chr1_1:79802828-79802847 | Msa0047120:CDS | 40.0% | |
| ACAAGTACCTAGACTGAACA+TGG | - | chr1_1:79802865-79802884 | None:intergenic | 40.0% | |
| TGAATATGCAGGTCTGTTCA+TGG | + | chr1_1:79802946-79802965 | Msa0047120:intron | 40.0% | |
| TTTCCACATGCAATCAGCTT+AGG | - | chr1_1:79802980-79802999 | None:intergenic | 40.0% | |
| ! | ACGCATACCAATTGCTATTG+AGG | - | chr1_1:79803065-79803084 | None:intergenic | 40.0% |
| TCAATAGCAATTGGTATGCG+TGG | + | chr1_1:79803064-79803083 | Msa0047120:CDS | 40.0% | |
| ACAAAGGGAACAATACCTTG+GGG | - | chr1_1:79803236-79803255 | None:intergenic | 40.0% | |
| CACAAAGGGAACAATACCTT+GGG | - | chr1_1:79803237-79803256 | None:intergenic | 40.0% | |
| ACACAAAGGGAACAATACCT+TGG | - | chr1_1:79803238-79803257 | None:intergenic | 40.0% | |
| ! | CACCCAGTACTGAGTATATT+TGG | - | chr1_1:79803284-79803303 | None:intergenic | 40.0% |
| TAGCATACGGTTCAGTTCGT+TGG | + | chr1_1:79800908-79800927 | Msa0047120:CDS | 45.0% | |
| GATGCTGAAATAGGTGAGGA+TGG | + | chr1_1:79801420-79801439 | Msa0047120:CDS | 45.0% | |
| CCACGAGCTTCAAATCTAAC+CGG | + | chr1_1:79801528-79801547 | Msa0047120:CDS | 45.0% | |
| TCAAGAGAACCAACTCCAAG+AGG | + | chr1_1:79801576-79801595 | Msa0047120:CDS | 45.0% | |
| !! | CGGCGCTTTACTTTGAAACA+TGG | - | chr1_1:79801631-79801650 | None:intergenic | 45.0% |
| ! | GAAAGCATAGGATTTGGAGG+AGG | - | chr1_1:79801837-79801856 | None:intergenic | 45.0% |
| ! | CCAGAAAGCATAGGATTTGG+AGG | - | chr1_1:79801840-79801859 | None:intergenic | 45.0% |
| CCTCCAAATCCTATGCTTTC+TGG | + | chr1_1:79801837-79801856 | Msa0047120:CDS | 45.0% | |
| !! | CTTTCTGGTTCTACAAGTGC+TGG | + | chr1_1:79801852-79801871 | Msa0047120:CDS | 45.0% |
| AAGAAAGATAGCATGGGTGG+TGG | + | chr1_1:79801882-79801901 | Msa0047120:CDS | 45.0% | |
| !! | ATGGGTGGTGGAAATGGTAA+TGG | + | chr1_1:79801894-79801913 | Msa0047120:CDS | 45.0% |
| AGTGCTTCACCTATTTCCGA+AGG | + | chr1_1:79801957-79801976 | Msa0047120:CDS | 45.0% | |
| GTGCTTCACCTATTTCCGAA+GGG | + | chr1_1:79801958-79801977 | Msa0047120:CDS | 45.0% | |
| AAGATTGCACGGACGTTTGA+CGG | - | chr1_1:79802220-79802239 | None:intergenic | 45.0% | |
| ! | TAGCCAGAAGAAGATGGACT+TGG | + | chr1_1:79802367-79802386 | Msa0047120:CDS | 45.0% |
| CTTCCAAGTCCATCTTCTTC+TGG | - | chr1_1:79802373-79802392 | None:intergenic | 45.0% | |
| ! | CAGAAGAAGATGGACTTGGA+AGG | + | chr1_1:79802371-79802390 | Msa0047120:CDS | 45.0% |
| ! | AAGAAGATGGACTTGGAAGG+AGG | + | chr1_1:79802374-79802393 | Msa0047120:CDS | 45.0% |
| ! | CTTGTCATAACACTTGCTGG+AGG | - | chr1_1:79802428-79802447 | None:intergenic | 45.0% |
| CTAATGATGTGCATGCATGC+AGG | + | chr1_1:79802769-79802788 | Msa0047120:intron | 45.0% | |
| ! | ATACTGTCTGATGCTGGTCT+TGG | + | chr1_1:79802834-79802853 | Msa0047120:CDS | 45.0% |
| ATGGCTGTAAGGTTCTTGAC+CGG | + | chr1_1:79803019-79803038 | Msa0047120:CDS | 45.0% | |
| CATACGGTTCAGTTCGTTGG+TGG | + | chr1_1:79800911-79800930 | Msa0047120:CDS | 50.0% | |
| ! | CCGGTTAGATTTGAAGCTCG+TGG | - | chr1_1:79801531-79801550 | None:intergenic | 50.0% |
| !! | AAAGCGCCGAGTCCAAAACA+TGG | + | chr1_1:79801642-79801661 | Msa0047120:CDS | 50.0% |
| AGGATGCATAAGAAGAGGGG+AGG | + | chr1_1:79801768-79801787 | Msa0047120:CDS | 50.0% | |
| GGATGCATAAGAAGAGGGGA+GGG | + | chr1_1:79801769-79801788 | Msa0047120:CDS | 50.0% | |
| !! | GATAGCATGGGTGGTGGAAA+TGG | + | chr1_1:79801888-79801907 | Msa0047120:CDS | 50.0% |
| ! | AAGATGGACTTGGAAGGAGG+AGG | + | chr1_1:79802377-79802396 | Msa0047120:CDS | 50.0% |
| ! | AGATGGACTTGGAAGGAGGA+GGG | + | chr1_1:79802378-79802397 | Msa0047120:CDS | 50.0% |
| !! | GTCTGATGCTGGTCTTGGAA+TGG | + | chr1_1:79802839-79802858 | Msa0047120:CDS | 50.0% |
| GGAATGGCCATGTTCAGTCT+AGG | + | chr1_1:79802855-79802874 | Msa0047120:CDS | 50.0% | |
| CAGCCTAAGCTGATTGCATG+TGG | + | chr1_1:79802974-79802993 | Msa0047120:CDS | 50.0% | |
| GCGGCAACCTCAATAGCAAT+TGG | + | chr1_1:79803055-79803074 | Msa0047120:CDS | 50.0% | |
| TGCATAAGAAGAGGGGAGGG+AGG | + | chr1_1:79801772-79801791 | Msa0047120:CDS | 55.0% | |
| ! | GATGGACTTGGAAGGAGGAG+GGG | + | chr1_1:79802379-79802398 | Msa0047120:CDS | 55.0% |
| CTTCCAAAGGGGCTACTCCG+AGG | + | chr1_1:79801718-79801737 | Msa0047120:CDS | 60.0% | |
| AGTCCTCGGAGTAGCCCCTT+TGG | - | chr1_1:79801724-79801743 | None:intergenic | 60.0% | |
| ! | AGGGGAGGGAGGAGTATGAG+TGG | + | chr1_1:79801783-79801802 | Msa0047120:CDS | 60.0% |
| GACCGGTCCAGCTGTGATTG+CGG | + | chr1_1:79803036-79803055 | Msa0047120:CDS | 60.0% | |
| TGCCGCAATCACAGCTGGAC+CGG | - | chr1_1:79803041-79803060 | None:intergenic | 60.0% | |
| GAGGTTGCCGCAATCACAGC+TGG | - | chr1_1:79803046-79803065 | None:intergenic | 60.0% | |
| TTGCAGGCTGCACTTCCCCA+AGG | + | chr1_1:79803218-79803237 | Msa0047120:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79800841 | 79803702 | 79800841 | ID=Msa0047120;Name=Msa0047120 |
| chr1_1 | mRNA | 79800841 | 79803702 | 79800841 | ID=Msa0047120-mRNA-1;Parent=Msa0047120;Name=Msa0047120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.83|1|1|1|6|218|625 |
| chr1_1 | exon | 79800841 | 79802077 | 79800841 | ID=Msa0047120-mRNA-1:exon:27538;Parent=Msa0047120-mRNA-1 |
| chr1_1 | exon | 79802288 | 79802540 | 79802288 | ID=Msa0047120-mRNA-1:exon:27539;Parent=Msa0047120-mRNA-1 |
| chr1_1 | exon | 79802791 | 79802876 | 79802791 | ID=Msa0047120-mRNA-1:exon:27540;Parent=Msa0047120-mRNA-1 |
| chr1_1 | exon | 79802957 | 79803114 | 79802957 | ID=Msa0047120-mRNA-1:exon:27541;Parent=Msa0047120-mRNA-1 |
| chr1_1 | exon | 79803224 | 79803300 | 79803224 | ID=Msa0047120-mRNA-1:exon:27542;Parent=Msa0047120-mRNA-1 |
| chr1_1 | exon | 79803418 | 79803702 | 79803418 | ID=Msa0047120-mRNA-1:exon:27543;Parent=Msa0047120-mRNA-1 |
| chr1_1 | CDS | 79800841 | 79802077 | 79800841 | ID=Msa0047120-mRNA-1:cds;Parent=Msa0047120-mRNA-1 |
| chr1_1 | CDS | 79802288 | 79802540 | 79802288 | ID=Msa0047120-mRNA-1:cds;Parent=Msa0047120-mRNA-1 |
| chr1_1 | CDS | 79802791 | 79802876 | 79802791 | ID=Msa0047120-mRNA-1:cds;Parent=Msa0047120-mRNA-1 |
| chr1_1 | CDS | 79802957 | 79803114 | 79802957 | ID=Msa0047120-mRNA-1:cds;Parent=Msa0047120-mRNA-1 |
| chr1_1 | CDS | 79803224 | 79803300 | 79803224 | ID=Msa0047120-mRNA-1:cds;Parent=Msa0047120-mRNA-1 |
| chr1_1 | CDS | 79803418 | 79803484 | 79803418 | ID=Msa0047120-mRNA-1:cds;Parent=Msa0047120-mRNA-1 |
| chr1_1 | three_prime_UTR | 79803485 | 79803702 | 79803485 | ID=Msa0047120-mRNA-1:three_prime_utr;Parent=Msa0047120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
