Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394340 | XP_003610026.1 | 98.720 | 625 | 8 | 0 | 1 | 625 | 1 | 625 | 0.0 | 1273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394340 | sp|Q9LU77|PIN2_ARATH | 74.884 | 649 | 137 | 11 | 1 | 625 | 1 | 647 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394340 | Q84YG8 | 98.720 | 625 | 8 | 0 | 1 | 625 | 1 | 625 | 0.0 | 1273 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012810 | Msa1394340 | 0.800642 | 1.309354e-48 | -8.615850e-47 |
| Msa0013040 | Msa1394340 | 0.800715 | 1.265615e-48 | -8.615850e-47 |
| Msa0047120 | Msa1394340 | 0.976916 | 9.500176e-143 | -8.615850e-47 |
| Msa0094510 | Msa1394340 | 0.897075 | 1.998696e-76 | -8.615850e-47 |
| Msa0727480 | Msa1394340 | 0.803252 | 3.808634e-49 | -8.615850e-47 |
| Msa0768720 | Msa1394340 | 0.807933 | 3.967651e-50 | -8.615850e-47 |
| Msa0814160 | Msa1394340 | 0.806968 | 6.356756e-50 | -8.615850e-47 |
| Msa0822410 | Msa1394340 | 0.822109 | 2.824461e-53 | -8.615850e-47 |
| Msa0190670 | Msa1394340 | 0.814156 | 1.778642e-51 | -8.615850e-47 |
| Msa1265840 | Msa1394340 | 0.937111 | 5.882898e-98 | -8.615850e-47 |
| Msa1109880 | Msa1394340 | 0.800048 | 1.729935e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394340 | MtrunA17_Chr4g0071571 | 98.720 | 625 | 8 | 0 | 1 | 625 | 1 | 625 | 0.0 | 1273 |
| Msa1394340 | MtrunA17_Chr4g0044181 | 57.372 | 685 | 206 | 15 | 1 | 625 | 1 | 659 | 0.0 | 724 |
| Msa1394340 | MtrunA17_Chr6g0478431 | 59.259 | 648 | 197 | 12 | 1 | 625 | 1 | 604 | 0.0 | 720 |
| Msa1394340 | MtrunA17_Chr7g0255941 | 60.601 | 632 | 201 | 11 | 1 | 625 | 1 | 591 | 0.0 | 698 |
| Msa1394340 | MtrunA17_Chr1g0160461 | 58.168 | 655 | 210 | 12 | 1 | 625 | 1 | 621 | 0.0 | 692 |
| Msa1394340 | MtrunA17_Chr8g0393111 | 54.106 | 621 | 155 | 15 | 1 | 595 | 1 | 517 | 0.0 | 590 |
| Msa1394340 | MtrunA17_Chr1g0159341 | 48.336 | 631 | 216 | 20 | 1 | 625 | 1 | 527 | 5.70e-167 | 487 |
| Msa1394340 | MtrunA17_Chr4g0071551 | 95.327 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 3.01e-148 | 427 |
| Msa1394340 | MtrunA17_Chr4g0071561 | 61.316 | 380 | 77 | 7 | 228 | 601 | 1 | 316 | 2.42e-144 | 421 |
| Msa1394340 | MtrunA17_Chr2g0298971 | 40.063 | 639 | 226 | 15 | 1 | 604 | 1 | 517 | 1.59e-131 | 395 |
| Msa1394340 | MtrunA17_Chr7g0216571 | 52.451 | 204 | 87 | 2 | 422 | 625 | 174 | 367 | 2.52e-60 | 205 |
| Msa1394340 | MtrunA17_Chr7g0216571 | 54.658 | 161 | 68 | 2 | 1 | 159 | 12 | 169 | 3.86e-48 | 172 |
| Msa1394340 | MtrunA17_Chr6g0452821 | 52.151 | 186 | 89 | 0 | 440 | 625 | 175 | 360 | 5.65e-59 | 201 |
| Msa1394340 | MtrunA17_Chr6g0452821 | 55.696 | 158 | 70 | 0 | 1 | 158 | 1 | 158 | 4.49e-50 | 177 |
| Msa1394340 | MtrunA17_Chr7g0249141 | 45.918 | 196 | 94 | 2 | 435 | 623 | 169 | 359 | 5.78e-53 | 185 |
| Msa1394340 | MtrunA17_Chr7g0249141 | 49.359 | 156 | 78 | 1 | 1 | 156 | 1 | 155 | 1.08e-47 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394340 | AT5G57090.1 | 74.884 | 649 | 137 | 11 | 1 | 625 | 1 | 647 | 0.0 | 937 |
| Msa1394340 | AT5G57090.2 | 72.761 | 547 | 124 | 10 | 103 | 625 | 2 | 547 | 0.0 | 753 |
| Msa1394340 | AT1G70940.1 | 58.234 | 668 | 208 | 14 | 1 | 625 | 1 | 640 | 0.0 | 706 |
| Msa1394340 | AT1G23080.3 | 59.288 | 646 | 211 | 12 | 1 | 625 | 1 | 615 | 0.0 | 704 |
| Msa1394340 | AT1G23080.4 | 59.288 | 646 | 211 | 12 | 1 | 625 | 1 | 615 | 0.0 | 704 |
| Msa1394340 | AT2G01420.2 | 57.935 | 649 | 216 | 12 | 1 | 625 | 1 | 616 | 0.0 | 702 |
| Msa1394340 | AT2G01420.1 | 58.642 | 648 | 209 | 13 | 1 | 625 | 1 | 612 | 0.0 | 701 |
| Msa1394340 | AT1G23080.1 | 58.769 | 650 | 212 | 12 | 1 | 625 | 1 | 619 | 0.0 | 699 |
| Msa1394340 | AT1G73590.1 | 59.259 | 648 | 215 | 14 | 1 | 625 | 1 | 622 | 0.0 | 688 |
| Msa1394340 | AT1G23080.2 | 55.393 | 547 | 192 | 12 | 1 | 526 | 1 | 516 | 0.0 | 549 |
| Msa1394340 | AT2G01420.3 | 54.364 | 550 | 194 | 12 | 1 | 526 | 1 | 517 | 0.0 | 538 |
| Msa1394340 | AT1G77110.1 | 45.820 | 646 | 253 | 15 | 1 | 625 | 1 | 570 | 1.37e-172 | 503 |
| Msa1394340 | AT1G77110.2 | 44.872 | 624 | 247 | 15 | 1 | 603 | 1 | 548 | 1.03e-159 | 469 |
| Msa1394340 | AT5G15100.1 | 59.877 | 162 | 65 | 0 | 462 | 623 | 204 | 365 | 1.21e-58 | 201 |
| Msa1394340 | AT5G15100.1 | 47.458 | 177 | 84 | 2 | 1 | 173 | 1 | 172 | 3.30e-43 | 159 |
| Msa1394340 | AT5G16530.1 | 53.595 | 153 | 71 | 0 | 471 | 623 | 195 | 347 | 5.54e-52 | 183 |
| Msa1394340 | AT5G16530.1 | 44.878 | 205 | 100 | 3 | 1 | 205 | 1 | 192 | 3.83e-50 | 178 |
| Msa1394340 | AT5G16530.2 | 44.878 | 205 | 100 | 3 | 1 | 205 | 1 | 192 | 1.26e-50 | 178 |
| Msa1394340 | AT5G16530.2 | 52.985 | 134 | 63 | 0 | 471 | 604 | 195 | 328 | 7.04e-44 | 160 |
Find 148 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCAAATCCTATGCTTTC+TGG | 0.083914 | tig0021786:-68670 | Msa1394340:CDS |
| AAAGCTGCTTCTACTGATTT+TGG | 0.151528 | tig0021786:-68505 | Msa1394340:CDS |
| GTGGCGTCATATTATTTAAA+TGG | 0.167054 | tig0021786:+68998 | None:intergenic |
| TCTGACGTTGTTTCGCTTAA+TGG | 0.202697 | tig0021786:-69129 | Msa1394340:CDS |
| GTTATAGAAGCTGCAGTTTC+AGG | 0.222137 | tig0021786:+69168 | None:intergenic |
| GAAATGCCATCTATTGTAAA+AGG | 0.235112 | tig0021786:-67706 | Msa1394340:CDS |
| TTTGGTCTCTTGTATCATTT+AGG | 0.244094 | tig0021786:-67988 | Msa1394340:intron |
| ATAAGACTTGAGTAGGTATT+AGG | 0.244249 | tig0021786:+68019 | None:intergenic |
| CACCCAGTACTGAGTATATT+TGG | 0.250618 | tig0021786:+67230 | None:intergenic |
| AATACCTACTCAAGTCTTAT+AGG | 0.254018 | tig0021786:-68016 | Msa1394340:CDS |
| TTAAGATTCCCTTCGGAAAT+AGG | 0.258413 | tig0021786:+68541 | None:intergenic |
| TTGTGTTGCAGGGTTATATT+TGG | 0.267057 | tig0021786:-67103 | Msa1394340:intron |
| CTTCCAAGTCCATCTTCTTC+TGG | 0.279820 | tig0021786:+68137 | None:intergenic |
| ATGTGCAACTCCTTGTTATT+AGG | 0.280094 | tig0021786:+68589 | None:intergenic |
| CTATTTGTGTAACCATGTTT+TGG | 0.283244 | tig0021786:+68853 | None:intergenic |
| TTGTTCTGCAAAGTGTTATT+TGG | 0.283570 | tig0021786:-69254 | Msa1394340:CDS |
| CTTCAAACTGATGCTGAAAT+AGG | 0.286348 | tig0021786:-69096 | Msa1394340:CDS |
| TCTTCCTAACACACTTGTTA+TGG | 0.291487 | tig0021786:-69337 | Msa1394340:CDS |
| GATCATTGGAAGATATAAAA+TGG | 0.291739 | tig0021786:+69499 | None:intergenic |
| ATCTTCTTCTGGCTAATATA+TGG | 0.325305 | tig0021786:+68148 | None:intergenic |
| ATACTCTACTATGTGCTTCT+TGG | 0.327447 | tig0021786:-67055 | Msa1394340:CDS |
| AAGATATTGAATTCTATTAG+AGG | 0.331499 | tig0021786:-66941 | Msa1394340:three_prime_UTR |
| CTTACATGTTGCAATTGTTC+AGG | 0.334263 | tig0021786:-67414 | Msa1394340:intron |
| TGGATGGAGATTGTATTCTT+TGG | 0.334269 | tig0021786:+67250 | None:intergenic |
| CTTCCTAACACACTTGTTAT+GGG | 0.344721 | tig0021786:-69336 | Msa1394340:CDS |
| CACATAGTAGAGTATTGTTA+TGG | 0.345910 | tig0021786:+67063 | None:intergenic |
| TGAATATGCAGGTCTGTTCA+TGG | 0.369728 | tig0021786:-67561 | Msa1394340:intron |
| GAACCAGAAAGCATAGGATT+TGG | 0.370922 | tig0021786:+68667 | None:intergenic |
| AAGATCAACTACTAACTCTA+TGG | 0.372841 | tig0021786:-69043 | Msa1394340:CDS |
| TCTTGGAGTATAATCTATCT+TGG | 0.373259 | tig0021786:-67038 | Msa1394340:exon |
| GACTCATCCTTATCATGGTT+TGG | 0.377147 | tig0021786:-68060 | Msa1394340:CDS |
| GATAGCATGGGTGGTGGAAA+TGG | 0.382932 | tig0021786:-68619 | Msa1394340:CDS |
| CAAGTCTTATAGGACTTGTT+TGG | 0.388260 | tig0021786:-68006 | Msa1394340:CDS |
| AGGAGTTGCACATGTTTGTT+TGG | 0.388483 | tig0021786:-68579 | Msa1394340:CDS |
| ACTACTAACTCTATGGTATC+TGG | 0.400134 | tig0021786:-69036 | Msa1394340:CDS |
| TGGCGTCATATTATTTAAAT+GGG | 0.400508 | tig0021786:+68999 | None:intergenic |
| AGATGGACTTGGAAGGAGGA+GGG | 0.406669 | tig0021786:-68129 | Msa1394340:CDS |
| TTCACACCAGATCAATGTTC+TGG | 0.419637 | tig0021786:-69567 | Msa1394340:CDS |
| ATTCCCATAACAAGTGTGTT+AGG | 0.421389 | tig0021786:+69333 | None:intergenic |
| ATTCATAGCATAAGGATCAT+TGG | 0.433457 | tig0021786:+69485 | None:intergenic |
| TGCATAAGAAGAGGGGAGGG+AGG | 0.434830 | tig0021786:-68735 | Msa1394340:CDS |
| CATCCAAATATACTCAGTAC+TGG | 0.436602 | tig0021786:-67233 | Msa1394340:CDS |
| ATACTGTCTGATGCTGGTCT+TGG | 0.436774 | tig0021786:-67673 | Msa1394340:CDS |
| AGTCTTGTCATAACACTTGC+TGG | 0.442208 | tig0021786:+68079 | None:intergenic |
| CACAAAGGGAACAATACCTT+GGG | 0.446341 | tig0021786:+67277 | None:intergenic |
| GACAAGACTCATCCTTATCA+TGG | 0.446845 | tig0021786:-68065 | Msa1394340:CDS |
| TGTGTTAGGAAGAGTTGAAA+GGG | 0.446908 | tig0021786:+69347 | None:intergenic |
| AAAACCAAGATAGTCTTGAT+TGG | 0.448110 | tig0021786:-69386 | Msa1394340:CDS |
| AGTCCTCGGAGTAGCCCCTT+TGG | 0.453442 | tig0021786:+68786 | None:intergenic |
| AAACTAGATCCTCTTGGAGT+TGG | 0.454124 | tig0021786:+68922 | None:intergenic |
| CTATCTATAACCATGATTAC+CGG | 0.459673 | tig0021786:-69678 | None:intergenic |
| AAGATGGACTTGGAAGGAGG+AGG | 0.460717 | tig0021786:-68130 | Msa1394340:CDS |
| ACGCATACCAATTGCTATTG+AGG | 0.461284 | tig0021786:+67445 | None:intergenic |
| GTGAATCAGCTGCTAAGAAA+TGG | 0.462800 | tig0021786:+69460 | None:intergenic |
| CTTTCTGGTTCTACAAGTGC+TGG | 0.462832 | tig0021786:-68655 | Msa1394340:CDS |
| AAATGGTAATTCATAGCATA+AGG | 0.463466 | tig0021786:+69477 | None:intergenic |
| TTTCCACATGCAATCAGCTT+AGG | 0.466851 | tig0021786:+67530 | None:intergenic |
| AGTGGTGAGTTGTTCAATAA+TGG | 0.467127 | tig0021786:-68706 | Msa1394340:CDS |
| CGGCGCTTTACTTTGAAACA+TGG | 0.467403 | tig0021786:+68879 | None:intergenic |
| TGCATGTTTAAGATTCCCTT+CGG | 0.467611 | tig0021786:+68534 | None:intergenic |
| ATTCTATGCAATCTTCCAAA+GGG | 0.470349 | tig0021786:-68801 | Msa1394340:CDS |
| TAGTCCAATCAAGACTATCT+TGG | 0.470572 | tig0021786:+69382 | None:intergenic |
| ATCTCAATACTGTCTGATGC+TGG | 0.484824 | tig0021786:-67679 | Msa1394340:CDS |
| GATGGACTTGGAAGGAGGAG+GGG | 0.487071 | tig0021786:-68128 | Msa1394340:CDS |
| GCGGCAACCTCAATAGCAAT+TGG | 0.493077 | tig0021786:-67452 | Msa1394340:CDS |
| TCTTCGAAATTTGAAGTCCT+CGG | 0.493160 | tig0021786:+68772 | None:intergenic |
| ACATAGTAGAGTATTGTTAT+GGG | 0.493323 | tig0021786:+67064 | None:intergenic |
| ATTTCAACATCCCTTTGTCT+AGG | 0.495176 | tig0021786:+68190 | None:intergenic |
| ATTATGATGATGTGGCTTCA+AGG | 0.495568 | tig0021786:-67005 | Msa1394340:three_prime_UTR |
| GAGGTTGCCGCAATCACAGC+TGG | 0.497964 | tig0021786:+67464 | None:intergenic |
| ACAAAGGGATGTTGAAATTG+AGG | 0.498259 | tig0021786:-68185 | Msa1394340:CDS |
| TTTATACCAGAACATTGATC+TGG | 0.498746 | tig0021786:+69561 | None:intergenic |
| GTGTGTTAGGAAGAGTTGAA+AGG | 0.500046 | tig0021786:+69346 | None:intergenic |
| TGCCGCAATCACAGCTGGAC+CGG | 0.500587 | tig0021786:+67469 | None:intergenic |
| TATTCTTTGGCAAACACAAA+GGG | 0.501329 | tig0021786:+67263 | None:intergenic |
| CCAGAAAGCATAGGATTTGG+AGG | 0.501646 | tig0021786:+68670 | None:intergenic |
| TGGTTAAAACTAGATCCTCT+TGG | 0.501747 | tig0021786:+68916 | None:intergenic |
| CATACGGTTCAGTTCGTTGG+TGG | 0.502544 | tig0021786:-69596 | Msa1394340:CDS |
| GAAAATACCGTTGCATCAAA+AGG | 0.506036 | tig0021786:-68451 | Msa1394340:intron |
| ATATATTAGCCAGAAGAAGA+TGG | 0.507802 | tig0021786:-68146 | Msa1394340:CDS |
| TATATCCTTACCGGTAATCA+TGG | 0.512246 | tig0021786:+69668 | None:intergenic |
| CCACGAGCTTCAAATCTAAC+CGG | 0.512403 | tig0021786:-68979 | Msa1394340:CDS |
| GGTTCATTCAAACAGATGAA+TGG | 0.513821 | tig0021786:-66983 | Msa1394340:three_prime_UTR |
| TAGCATACGGTTCAGTTCGT+TGG | 0.514377 | tig0021786:-69599 | Msa1394340:CDS |
| GGATGCATAAGAAGAGGGGA+GGG | 0.515503 | tig0021786:-68738 | Msa1394340:CDS |
| TTATGATGATGTGGCTTCAA+GGG | 0.517205 | tig0021786:-67004 | Msa1394340:three_prime_UTR |
| CACAAAGAAGAAAGATAGCA+TGG | 0.528645 | tig0021786:-68632 | Msa1394340:CDS |
| GTCTGATGCTGGTCTTGGAA+TGG | 0.532632 | tig0021786:-67668 | Msa1394340:CDS |
| TATTCTATGCAATCTTCCAA+AGG | 0.533077 | tig0021786:-68802 | Msa1394340:CDS |
| TAGCCAGAAGAAGATGGACT+TGG | 0.535792 | tig0021786:-68140 | Msa1394340:CDS |
| ATGGGTGGTGGAAATGGTAA+TGG | 0.538764 | tig0021786:-68613 | Msa1394340:CDS |
| AGGATGCATAAGAAGAGGGG+AGG | 0.538999 | tig0021786:-68739 | Msa1394340:CDS |
| AACATCGTATATATCCTTAC+CGG | 0.540847 | tig0021786:+69659 | None:intergenic |
| GCTATGTATGGTGATTTCTC+AGG | 0.545619 | tig0021786:-69297 | Msa1394340:CDS |
| AGGGGAGGGAGGAGTATGAG+TGG | 0.545646 | tig0021786:-68724 | Msa1394340:CDS |
| TCATGTGGAACATATTTGGA+AGG | 0.549434 | tig0021786:+68472 | None:intergenic |
| TATAACCATGATTACCGGTA+AGG | 0.552385 | tig0021786:-69673 | None:intergenic |
| AAGAAAGATAGCATGGGTGG+TGG | 0.552901 | tig0021786:-68625 | Msa1394340:CDS |
| GAACATGAGTCCTAGACAAA+GGG | 0.557185 | tig0021786:-68200 | Msa1394340:CDS |
| ACACAAAGGGAACAATACCT+TGG | 0.558237 | tig0021786:+67276 | None:intergenic |
| ATTTCAGCATCAGTTTGAAG+TGG | 0.563565 | tig0021786:+69099 | None:intergenic |
| ATTGAGGATGCATAAGAAGA+GGG | 0.564904 | tig0021786:-68743 | Msa1394340:CDS |
| AGTGCTTCACCTATTTCCGA+AGG | 0.569824 | tig0021786:-68550 | Msa1394340:CDS |
| GACCGGTCCAGCTGTGATTG+CGG | 0.570068 | tig0021786:-67471 | Msa1394340:CDS |
| ATAAAATGGAAAGATAGTAA+TGG | 0.571283 | tig0021786:+69513 | None:intergenic |
| GGAATGGCCATGTTCAGTCT+AGG | 0.576547 | tig0021786:-67652 | Msa1394340:intron |
| AAGTCCTATAAGACTTGAGT+AGG | 0.579378 | tig0021786:+68012 | None:intergenic |
| ATGGCTGTAAGGTTCTTGAC+CGG | 0.579568 | tig0021786:-67488 | Msa1394340:CDS |
| GAAAGCATAGGATTTGGAGG+AGG | 0.582023 | tig0021786:+68673 | None:intergenic |
| ATTTCGAAGATGAGACATTG+AGG | 0.583231 | tig0021786:-68759 | Msa1394340:CDS |
| AGCATCAGACAGTATTGAGA+TGG | 0.585685 | tig0021786:+67681 | None:intergenic |
| CATACATAGCTCTTAAAAGA+GGG | 0.587601 | tig0021786:+69310 | None:intergenic |
| GTATTCTTTGGCAAACACAA+AGG | 0.589188 | tig0021786:+67262 | None:intergenic |
| CCATACATAGCTCTTAAAAG+AGG | 0.589751 | tig0021786:+69309 | None:intergenic |
| GTTGCTATGATATTAGCATA+CGG | 0.591499 | tig0021786:-69612 | Msa1394340:CDS |
| CATTCAAACAGATGAATGGA+AGG | 0.591798 | tig0021786:-66979 | Msa1394340:three_prime_UTR |
| TCAATAGCAATTGGTATGCG+TGG | 0.591915 | tig0021786:-67443 | Msa1394340:CDS |
| CATTGAGGATGCATAAGAAG+AGG | 0.595513 | tig0021786:-68744 | Msa1394340:CDS |
| ATCCAAATATACTCAGTACT+GGG | 0.597499 | tig0021786:-67232 | Msa1394340:intron |
| CAGTACTGAGTATATTTGGA+TGG | 0.598102 | tig0021786:+67234 | None:intergenic |
| CAGCCTAAGCTGATTGCATG+TGG | 0.600231 | tig0021786:-67533 | Msa1394340:CDS |
| CCGGTTAGATTTGAAGCTCG+TGG | 0.602636 | tig0021786:+68979 | None:intergenic |
| AAAGCATAGGATTTGGAGGA+GGG | 0.604256 | tig0021786:+68674 | None:intergenic |
| AGAACATGAGTCCTAGACAA+AGG | 0.609263 | tig0021786:-68201 | Msa1394340:CDS |
| CAGAAGAAGATGGACTTGGA+AGG | 0.618184 | tig0021786:-68136 | Msa1394340:CDS |
| AAGAAGATGGACTTGGAAGG+AGG | 0.619267 | tig0021786:-68133 | Msa1394340:CDS |
| GCAAATCAATTATGATGATG+TGG | 0.621632 | tig0021786:-67013 | Msa1394340:three_prime_UTR |
| TTGCAGGCTGCACTTCCCCA+AGG | 0.623512 | tig0021786:-67293 | Msa1394340:intron |
| TGATTTCTCAGGAAATCTCA+TGG | 0.626161 | tig0021786:-69286 | Msa1394340:CDS |
| CTTGTAGAACCAGAAAGCAT+AGG | 0.628500 | tig0021786:+68661 | None:intergenic |
| GATGCTGAAATAGGTGAGGA+TGG | 0.629252 | tig0021786:-69087 | Msa1394340:CDS |
| ACAAGTACCTAGACTGAACA+TGG | 0.632685 | tig0021786:+67645 | None:intergenic |
| GGTGAGTTGTTCAATAATGG+TGG | 0.635458 | tig0021786:-68703 | Msa1394340:CDS |
| TCAAGAGAACCAACTCCAAG+AGG | 0.636626 | tig0021786:-68931 | Msa1394340:CDS |
| TTCTATGCAATCTTCCAAAG+GGG | 0.639413 | tig0021786:-68800 | Msa1394340:CDS |
| GGATGGTAAACTTCATGTTG+TGG | 0.641471 | tig0021786:-69070 | Msa1394340:CDS |
| GTGCTTCACCTATTTCCGAA+GGG | 0.647728 | tig0021786:-68549 | Msa1394340:CDS |
| AACTGATGCTGAAATAGGTG+AGG | 0.662294 | tig0021786:-69091 | Msa1394340:CDS |
| AAGAAGAAAGATAGCATGGG+TGG | 0.662615 | tig0021786:-68628 | Msa1394340:CDS |
| TGGTAATGGACCTAATAACA+AGG | 0.666402 | tig0021786:-68599 | Msa1394340:CDS |
| ACAAAGAAGAAAGATAGCAT+GGG | 0.672441 | tig0021786:-68631 | Msa1394340:CDS |
| TTGAGGATGCATAAGAAGAG+GGG | 0.674550 | tig0021786:-68742 | Msa1394340:CDS |
| CTTCCAAAGGGGCTACTCCG+AGG | 0.679174 | tig0021786:-68789 | Msa1394340:CDS |
| AAAGCGCCGAGTCCAAAACA+TGG | 0.682082 | tig0021786:-68865 | Msa1394340:CDS |
| AACAGAATATATCTCAACAC+CGG | 0.682527 | tig0021786:+68960 | None:intergenic |
| AATATCATAGCAACATACAG+TGG | 0.685927 | tig0021786:+69621 | None:intergenic |
| CTTGTCATAACACTTGCTGG+AGG | 0.701230 | tig0021786:+68082 | None:intergenic |
| ACAAAGGGAACAATACCTTG+GGG | 0.771870 | tig0021786:+67278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGCTTATATTTAAAAAA+CGG | + | tig0021786:68595-68614 | None:intergenic | 10.0% |
| !!! | TGAAAGTTGATATATTTATA+GGG | + | tig0021786:68163-68182 | None:intergenic | 15.0% |
| !!! | TTGAAAGTTGATATATTTAT+AGG | + | tig0021786:68164-68183 | None:intergenic | 15.0% |
| !!! | TAATAGATTGAAGATTTTTT+TGG | + | tig0021786:68558-68577 | None:intergenic | 15.0% |
| !!! | ATTTTGCTTATATTTAGAAA+CGG | - | tig0021786:68703-68722 | Msa1394340:CDS | 15.0% |
| !!! | AATGTTTAATTTTAATTTGC+AGG | - | tig0021786:69187-69206 | Msa1394340:CDS | 15.0% |
| !! | TGAAATACTAAAAAAGAATT+TGG | - | tig0021786:69367-69386 | Msa1394340:CDS | 15.0% |
| !! | ATAAAATGGAAAGATAGTAA+TGG | + | tig0021786:66986-67005 | None:intergenic | 20.0% |
| !!! | ACAAATAGTTTTCAAAGTAA+TGG | - | tig0021786:67658-67677 | Msa1394340:CDS | 20.0% |
| !!! | ATAAGCAAAATTGACTTTTT+AGG | - | tig0021786:68605-68624 | Msa1394340:CDS | 20.0% |
| !! | CATTCATTTAATGATGTATT+TGG | - | tig0021786:68630-68649 | Msa1394340:CDS | 20.0% |
| !!! | ATATTCTCCTAAGAAAATTT+TGG | - | tig0021786:68887-68906 | Msa1394340:CDS | 20.0% |
| !!! | AATTAAGCCAAAATTTTCTT+AGG | + | tig0021786:68897-68916 | None:intergenic | 20.0% |
| !!! | ATAATCATTTTTGAATATGC+AGG | - | tig0021786:68924-68943 | Msa1394340:CDS | 20.0% |
| !! | ATAAGCAACTAATTAGAATA+GGG | + | tig0021786:69158-69177 | None:intergenic | 20.0% |
| !! | AATAAGCAACTAATTAGAAT+AGG | + | tig0021786:69159-69178 | None:intergenic | 20.0% |
| !! | AAGATATTGAATTCTATTAG+AGG | - | tig0021786:69555-69574 | Msa1394340:CDS | 20.0% |
| !!! | ATTTTGATTCAAATGAAAGT+TGG | - | tig0021786:69629-69648 | Msa1394340:CDS | 20.0% |
| !!! | TTTTGATTCAAATGAAAGTT+GGG | - | tig0021786:69630-69649 | Msa1394340:CDS | 20.0% |
| ! | GATCATTGGAAGATATAAAA+TGG | + | tig0021786:67000-67019 | None:intergenic | 25.0% |
| ! | AAATGGTAATTCATAGCATA+AGG | + | tig0021786:67022-67041 | None:intergenic | 25.0% |
| ! | TGGCGTCATATTATTTAAAT+GGG | + | tig0021786:67500-67519 | None:intergenic | 25.0% |
| !! | AGTTTTCAAAGTAATGGTAA+TGG | - | tig0021786:67664-67683 | Msa1394340:CDS | 25.0% |
| !! | ATTTTCATGTGGAACATATT+TGG | + | tig0021786:68031-68050 | None:intergenic | 25.0% |
| !! | TTTAATACCTTTTGATGCAA+CGG | + | tig0021786:68055-68074 | None:intergenic | 25.0% |
| !!! | TTGAAGATTTTTTTGGAGAT+TGG | + | tig0021786:68551-68570 | None:intergenic | 25.0% |
| ! | TGCTTATATTTAAAAAACGG+AGG | + | tig0021786:68592-68611 | None:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | tig0021786:68669-68688 | None:intergenic | 25.0% |
| ! | TTCTTAGGAGAATATAATGT+TGG | + | tig0021786:68882-68901 | None:intergenic | 25.0% |
| ! | TAAGCAACTAATTAGAATAG+GGG | + | tig0021786:69157-69176 | None:intergenic | 25.0% |
| !!! | ACATAGTAGAGTATTGTTAT+GGG | + | tig0021786:69435-69454 | None:intergenic | 25.0% |
| AACATCGTATATATCCTTAC+CGG | + | tig0021786:66840-66859 | None:intergenic | 30.0% | |
| AATATCATAGCAACATACAG+TGG | + | tig0021786:66878-66897 | None:intergenic | 30.0% | |
| GTTGCTATGATATTAGCATA+CGG | - | tig0021786:66884-66903 | Msa1394340:three_prime_UTR | 30.0% | |
| TTTATACCAGAACATTGATC+TGG | + | tig0021786:66938-66957 | None:intergenic | 30.0% | |
| ATTCATAGCATAAGGATCAT+TGG | + | tig0021786:67014-67033 | None:intergenic | 30.0% | |
| CTTCAAAAAGTAGTTATCCT+TGG | - | tig0021786:67058-67077 | Msa1394340:CDS | 30.0% | |
| ! | AAAACCAAGATAGTCTTGAT+TGG | - | tig0021786:67110-67129 | Msa1394340:intron | 30.0% |
| CATACATAGCTCTTAAAAGA+GGG | + | tig0021786:67189-67208 | None:intergenic | 30.0% | |
| ! | TTGTTCTGCAAAGTGTTATT+TGG | - | tig0021786:67242-67261 | Msa1394340:CDS | 30.0% |
| AAGATCAACTACTAACTCTA+TGG | - | tig0021786:67453-67472 | Msa1394340:CDS | 30.0% | |
| GTGGCGTCATATTATTTAAA+TGG | + | tig0021786:67501-67520 | None:intergenic | 30.0% | |
| AACAGAATATATCTCAACAC+CGG | + | tig0021786:67539-67558 | None:intergenic | 30.0% | |
| ACATGGCATAAAAATCAGTT+TGG | + | tig0021786:67603-67622 | None:intergenic | 30.0% | |
| ! | CTATTTGTGTAACCATGTTT+TGG | + | tig0021786:67646-67665 | None:intergenic | 30.0% |
| TATTCTATGCAATCTTCCAA+AGG | - | tig0021786:67694-67713 | Msa1394340:CDS | 30.0% | |
| ATTCTATGCAATCTTCCAAA+GGG | - | tig0021786:67695-67714 | Msa1394340:CDS | 30.0% | |
| ACAAAGAAGAAAGATAGCAT+GGG | - | tig0021786:67865-67884 | Msa1394340:intron | 30.0% | |
| ! | ATCTTCTTCTGGCTAATATA+TGG | + | tig0021786:68351-68370 | None:intergenic | 30.0% |
| ATATATTAGCCAGAAGAAGA+TGG | - | tig0021786:68350-68369 | Msa1394340:intron | 30.0% | |
| ATAAGACTTGAGTAGGTATT+AGG | + | tig0021786:68480-68499 | None:intergenic | 30.0% | |
| ! | AATACCTACTCAAGTCTTAT+AGG | - | tig0021786:68480-68499 | Msa1394340:CDS | 30.0% |
| TTTGGTCTCTTGTATCATTT+AGG | - | tig0021786:68508-68527 | Msa1394340:CDS | 30.0% | |
| TTGCTTATATTTAGAAACGG+AGG | - | tig0021786:68706-68725 | Msa1394340:CDS | 30.0% | |
| TGCTTATATTTAGAAACGGA+GGG | - | tig0021786:68707-68726 | Msa1394340:CDS | 30.0% | |
| GAAATGCCATCTATTGTAAA+AGG | - | tig0021786:68790-68809 | Msa1394340:CDS | 30.0% | |
| ! | ATGGAACCTTTTACAATAGA+TGG | + | tig0021786:68799-68818 | None:intergenic | 30.0% |
| TATTCTTTGGCAAACACAAA+GGG | + | tig0021786:69236-69255 | None:intergenic | 30.0% | |
| ATCCAAATATACTCAGTACT+GGG | - | tig0021786:69264-69283 | Msa1394340:CDS | 30.0% | |
| ATTGCAAGTGATTAAGTATG+TGG | - | tig0021786:69338-69357 | Msa1394340:CDS | 30.0% | |
| AATTTGGTATTTGTGTTGCA+GGG | - | tig0021786:69383-69402 | Msa1394340:CDS | 30.0% | |
| !! | CACATAGTAGAGTATTGTTA+TGG | + | tig0021786:69436-69455 | None:intergenic | 30.0% |
| TCTTGGAGTATAATCTATCT+TGG | - | tig0021786:69458-69477 | Msa1394340:CDS | 30.0% | |
| ! | GCAAATCAATTATGATGATG+TGG | - | tig0021786:69483-69502 | Msa1394340:CDS | 30.0% |
| !!! | TCCTTGGTGCTCTTTTTATA+TGG | - | tig0021786:67074-67093 | Msa1394340:CDS | 35.0% |
| !! | TCCATATAAAAAGAGCACCA+AGG | + | tig0021786:67078-67097 | None:intergenic | 35.0% |
| TAGTCCAATCAAGACTATCT+TGG | + | tig0021786:67117-67136 | None:intergenic | 35.0% | |
| TGTGTTAGGAAGAGTTGAAA+GGG | + | tig0021786:67152-67171 | None:intergenic | 35.0% | |
| ! | TCTTCCTAACACACTTGTTA+TGG | - | tig0021786:67159-67178 | Msa1394340:intron | 35.0% |
| !! | CTTCCTAACACACTTGTTAT+GGG | - | tig0021786:67160-67179 | Msa1394340:intron | 35.0% |
| ATTCCCATAACAAGTGTGTT+AGG | + | tig0021786:67166-67185 | None:intergenic | 35.0% | |
| CCATACATAGCTCTTAAAAG+AGG | + | tig0021786:67190-67209 | None:intergenic | 35.0% | |
| !! | CCTCTTTTAAGAGCTATGTA+TGG | - | tig0021786:67187-67206 | Msa1394340:intron | 35.0% |
| TGATTTCTCAGGAAATCTCA+TGG | - | tig0021786:67210-67229 | Msa1394340:intron | 35.0% | |
| ATTTCAGCATCAGTTTGAAG+TGG | + | tig0021786:67400-67419 | None:intergenic | 35.0% | |
| CTTCAAACTGATGCTGAAAT+AGG | - | tig0021786:67400-67419 | Msa1394340:intron | 35.0% | |
| ACTACTAACTCTATGGTATC+TGG | - | tig0021786:67460-67479 | Msa1394340:CDS | 35.0% | |
| TGGTTAAAACTAGATCCTCT+TGG | + | tig0021786:67583-67602 | None:intergenic | 35.0% | |
| TTCTATGCAATCTTCCAAAG+GGG | - | tig0021786:67696-67715 | Msa1394340:CDS | 35.0% | |
| ! | TCTTCGAAATTTGAAGTCCT+CGG | + | tig0021786:67727-67746 | None:intergenic | 35.0% |
| ATTTCGAAGATGAGACATTG+AGG | - | tig0021786:67737-67756 | Msa1394340:intron | 35.0% | |
| ATTGAGGATGCATAAGAAGA+GGG | - | tig0021786:67753-67772 | Msa1394340:intron | 35.0% | |
| AGTGGTGAGTTGTTCAATAA+TGG | - | tig0021786:67790-67809 | Msa1394340:intron | 35.0% | |
| CACAAAGAAGAAAGATAGCA+TGG | - | tig0021786:67864-67883 | Msa1394340:intron | 35.0% | |
| !! | TGGTAATGGACCTAATAACA+AGG | - | tig0021786:67897-67916 | Msa1394340:intron | 35.0% |
| !! | ATGTGCAACTCCTTGTTATT+AGG | + | tig0021786:67910-67929 | None:intergenic | 35.0% |
| TTAAGATTCCCTTCGGAAAT+AGG | + | tig0021786:67958-67977 | None:intergenic | 35.0% | |
| ! | TGCATGTTTAAGATTCCCTT+CGG | + | tig0021786:67965-67984 | None:intergenic | 35.0% |
| !!! | AAAGCTGCTTCTACTGATTT+TGG | - | tig0021786:67991-68010 | Msa1394340:CDS | 35.0% |
| TCATGTGGAACATATTTGGA+AGG | + | tig0021786:68027-68046 | None:intergenic | 35.0% | |
| GAAAATACCGTTGCATCAAA+AGG | - | tig0021786:68045-68064 | Msa1394340:CDS | 35.0% | |
| ACGCTAGATTATATAGAACG+AGG | + | tig0021786:68124-68143 | None:intergenic | 35.0% | |
| AGATCATGTACAAGATTGCA+CGG | + | tig0021786:68220-68239 | None:intergenic | 35.0% | |
| ATTTCAACATCCCTTTGTCT+AGG | + | tig0021786:68309-68328 | None:intergenic | 35.0% | |
| ACAAAGGGATGTTGAAATTG+AGG | - | tig0021786:68311-68330 | Msa1394340:intron | 35.0% | |
| ! | GTTTTCTCCAAACCATGATA+AGG | + | tig0021786:68446-68465 | None:intergenic | 35.0% |
| AAGTCCTATAAGACTTGAGT+AGG | + | tig0021786:68487-68506 | None:intergenic | 35.0% | |
| ! | CAAGTCTTATAGGACTTGTT+TGG | - | tig0021786:68490-68509 | Msa1394340:CDS | 35.0% |
| CAGTTAAGGATTCATGATCA+AGG | + | tig0021786:68738-68757 | None:intergenic | 35.0% | |
| ATGCACATCATTAGCAGTTA+AGG | + | tig0021786:68752-68771 | None:intergenic | 35.0% | |
| ! | ACGAGTTGCAACATTTTCTA+TGG | - | tig0021786:68989-69008 | Msa1394340:CDS | 35.0% |
| ! | CAACATTTTCTATGGCTGTA+AGG | - | tig0021786:68997-69016 | Msa1394340:CDS | 35.0% |
| CTTACATGTTGCAATTGTTC+AGG | - | tig0021786:69082-69101 | Msa1394340:CDS | 35.0% | |
| GTATTCTTTGGCAAACACAA+AGG | + | tig0021786:69237-69256 | None:intergenic | 35.0% | |
| TGGATGGAGATTGTATTCTT+TGG | + | tig0021786:69249-69268 | None:intergenic | 35.0% | |
| ! | CAGTACTGAGTATATTTGGA+TGG | + | tig0021786:69265-69284 | None:intergenic | 35.0% |
| CATCCAAATATACTCAGTAC+TGG | - | tig0021786:69263-69282 | Msa1394340:CDS | 35.0% | |
| GAATTTGGTATTTGTGTTGC+AGG | - | tig0021786:69382-69401 | Msa1394340:CDS | 35.0% | |
| TTGTGTTGCAGGGTTATATT+TGG | - | tig0021786:69393-69412 | Msa1394340:CDS | 35.0% | |
| ATACTCTACTATGTGCTTCT+TGG | - | tig0021786:69441-69460 | Msa1394340:CDS | 35.0% | |
| ! | ATTATGATGATGTGGCTTCA+AGG | - | tig0021786:69491-69510 | Msa1394340:CDS | 35.0% |
| ! | TTATGATGATGTGGCTTCAA+GGG | - | tig0021786:69492-69511 | Msa1394340:CDS | 35.0% |
| GGTTCATTCAAACAGATGAA+TGG | - | tig0021786:69513-69532 | Msa1394340:CDS | 35.0% | |
| CATTCAAACAGATGAATGGA+AGG | - | tig0021786:69517-69536 | Msa1394340:CDS | 35.0% | |
| TTCACACCAGATCAATGTTC+TGG | - | tig0021786:66929-66948 | Msa1394340:three_prime_UTR | 40.0% | |
| CTGCAAAAACAGCGACAAAA+CGG | + | tig0021786:66961-66980 | None:intergenic | 40.0% | |
| GTGAATCAGCTGCTAAGAAA+TGG | + | tig0021786:67039-67058 | None:intergenic | 40.0% | |
| GTGTGTTAGGAAGAGTTGAA+AGG | + | tig0021786:67153-67172 | None:intergenic | 40.0% | |
| GCTATGTATGGTGATTTCTC+AGG | - | tig0021786:67199-67218 | Msa1394340:intron | 40.0% | |
| GTTATAGAAGCTGCAGTTTC+AGG | + | tig0021786:67331-67350 | None:intergenic | 40.0% | |
| ! | TCTGACGTTGTTTCGCTTAA+TGG | - | tig0021786:67367-67386 | Msa1394340:intron | 40.0% |
| AACTGATGCTGAAATAGGTG+AGG | - | tig0021786:67405-67424 | Msa1394340:intron | 40.0% | |
| GGATGGTAAACTTCATGTTG+TGG | - | tig0021786:67426-67445 | Msa1394340:CDS | 40.0% | |
| AAACTAGATCCTCTTGGAGT+TGG | + | tig0021786:67577-67596 | None:intergenic | 40.0% | |
| !! | GTGTAACCATGTTTTGGACT+CGG | + | tig0021786:67640-67659 | None:intergenic | 40.0% |
| CATTGAGGATGCATAAGAAG+AGG | - | tig0021786:67752-67771 | Msa1394340:intron | 40.0% | |
| TTGAGGATGCATAAGAAGAG+GGG | - | tig0021786:67754-67773 | Msa1394340:intron | 40.0% | |
| GGTGAGTTGTTCAATAATGG+TGG | - | tig0021786:67793-67812 | Msa1394340:intron | 40.0% | |
| AAAGCATAGGATTTGGAGGA+GGG | + | tig0021786:67825-67844 | None:intergenic | 40.0% | |
| ! | GAACCAGAAAGCATAGGATT+TGG | + | tig0021786:67832-67851 | None:intergenic | 40.0% |
| ! | CTTGTAGAACCAGAAAGCAT+AGG | + | tig0021786:67838-67857 | None:intergenic | 40.0% |
| AAGAAGAAAGATAGCATGGG+TGG | - | tig0021786:67868-67887 | Msa1394340:intron | 40.0% | |
| AGGAGTTGCACATGTTTGTT+TGG | - | tig0021786:67917-67936 | Msa1394340:intron | 40.0% | |
| ! | GATGCAACGGTATTTTCATG+TGG | + | tig0021786:68042-68061 | None:intergenic | 40.0% |
| AGAACATGAGTCCTAGACAA+AGG | - | tig0021786:68295-68314 | Msa1394340:intron | 40.0% | |
| GAACATGAGTCCTAGACAAA+GGG | - | tig0021786:68296-68315 | Msa1394340:intron | 40.0% | |
| ! | AGTCTTGTCATAACACTTGC+TGG | + | tig0021786:68420-68439 | None:intergenic | 40.0% |
| GACAAGACTCATCCTTATCA+TGG | - | tig0021786:68431-68450 | Msa1394340:intron | 40.0% | |
| GACTCATCCTTATCATGGTT+TGG | - | tig0021786:68436-68455 | Msa1394340:intron | 40.0% | |
| ! | AGCATCAGACAGTATTGAGA+TGG | + | tig0021786:68818-68837 | None:intergenic | 40.0% |
| ATCTCAATACTGTCTGATGC+TGG | - | tig0021786:68817-68836 | Msa1394340:CDS | 40.0% | |
| ACAAGTACCTAGACTGAACA+TGG | + | tig0021786:68854-68873 | None:intergenic | 40.0% | |
| TGAATATGCAGGTCTGTTCA+TGG | - | tig0021786:68935-68954 | Msa1394340:CDS | 40.0% | |
| TTTCCACATGCAATCAGCTT+AGG | + | tig0021786:68969-68988 | None:intergenic | 40.0% | |
| ! | ACGCATACCAATTGCTATTG+AGG | + | tig0021786:69054-69073 | None:intergenic | 40.0% |
| TCAATAGCAATTGGTATGCG+TGG | - | tig0021786:69053-69072 | Msa1394340:CDS | 40.0% | |
| ACAAAGGGAACAATACCTTG+GGG | + | tig0021786:69221-69240 | None:intergenic | 40.0% | |
| CACAAAGGGAACAATACCTT+GGG | + | tig0021786:69222-69241 | None:intergenic | 40.0% | |
| ACACAAAGGGAACAATACCT+TGG | + | tig0021786:69223-69242 | None:intergenic | 40.0% | |
| ! | CACCCAGTACTGAGTATATT+TGG | + | tig0021786:69269-69288 | None:intergenic | 40.0% |
| TAGCATACGGTTCAGTTCGT+TGG | - | tig0021786:66897-66916 | Msa1394340:three_prime_UTR | 45.0% | |
| GATGCTGAAATAGGTGAGGA+TGG | - | tig0021786:67409-67428 | Msa1394340:intron | 45.0% | |
| CCACGAGCTTCAAATCTAAC+CGG | - | tig0021786:67517-67536 | Msa1394340:CDS | 45.0% | |
| TCAAGAGAACCAACTCCAAG+AGG | - | tig0021786:67565-67584 | Msa1394340:intron | 45.0% | |
| !! | CGGCGCTTTACTTTGAAACA+TGG | + | tig0021786:67620-67639 | None:intergenic | 45.0% |
| ! | GAAAGCATAGGATTTGGAGG+AGG | + | tig0021786:67826-67845 | None:intergenic | 45.0% |
| ! | CCAGAAAGCATAGGATTTGG+AGG | + | tig0021786:67829-67848 | None:intergenic | 45.0% |
| CCTCCAAATCCTATGCTTTC+TGG | - | tig0021786:67826-67845 | Msa1394340:intron | 45.0% | |
| !! | CTTTCTGGTTCTACAAGTGC+TGG | - | tig0021786:67841-67860 | Msa1394340:intron | 45.0% |
| AAGAAAGATAGCATGGGTGG+TGG | - | tig0021786:67871-67890 | Msa1394340:intron | 45.0% | |
| !! | ATGGGTGGTGGAAATGGTAA+TGG | - | tig0021786:67883-67902 | Msa1394340:intron | 45.0% |
| AGTGCTTCACCTATTTCCGA+AGG | - | tig0021786:67946-67965 | Msa1394340:intron | 45.0% | |
| GTGCTTCACCTATTTCCGAA+GGG | - | tig0021786:67947-67966 | Msa1394340:intron | 45.0% | |
| AAGATTGCACGGACGTTTGA+CGG | + | tig0021786:68209-68228 | None:intergenic | 45.0% | |
| ! | TAGCCAGAAGAAGATGGACT+TGG | - | tig0021786:68356-68375 | Msa1394340:intron | 45.0% |
| CTTCCAAGTCCATCTTCTTC+TGG | + | tig0021786:68362-68381 | None:intergenic | 45.0% | |
| ! | CAGAAGAAGATGGACTTGGA+AGG | - | tig0021786:68360-68379 | Msa1394340:intron | 45.0% |
| ! | AAGAAGATGGACTTGGAAGG+AGG | - | tig0021786:68363-68382 | Msa1394340:intron | 45.0% |
| ! | CTTGTCATAACACTTGCTGG+AGG | + | tig0021786:68417-68436 | None:intergenic | 45.0% |
| CTAATGATGTGCATGCATGC+AGG | - | tig0021786:68758-68777 | Msa1394340:CDS | 45.0% | |
| ! | ATACTGTCTGATGCTGGTCT+TGG | - | tig0021786:68823-68842 | Msa1394340:CDS | 45.0% |
| ATGGCTGTAAGGTTCTTGAC+CGG | - | tig0021786:69008-69027 | Msa1394340:CDS | 45.0% | |
| CATACGGTTCAGTTCGTTGG+TGG | - | tig0021786:66900-66919 | Msa1394340:three_prime_UTR | 50.0% | |
| ! | CCGGTTAGATTTGAAGCTCG+TGG | + | tig0021786:67520-67539 | None:intergenic | 50.0% |
| !! | AAAGCGCCGAGTCCAAAACA+TGG | - | tig0021786:67631-67650 | Msa1394340:intron | 50.0% |
| AGGATGCATAAGAAGAGGGG+AGG | - | tig0021786:67757-67776 | Msa1394340:intron | 50.0% | |
| GGATGCATAAGAAGAGGGGA+GGG | - | tig0021786:67758-67777 | Msa1394340:intron | 50.0% | |
| !! | GATAGCATGGGTGGTGGAAA+TGG | - | tig0021786:67877-67896 | Msa1394340:intron | 50.0% |
| ! | AAGATGGACTTGGAAGGAGG+AGG | - | tig0021786:68366-68385 | Msa1394340:intron | 50.0% |
| ! | AGATGGACTTGGAAGGAGGA+GGG | - | tig0021786:68367-68386 | Msa1394340:intron | 50.0% |
| !! | GTCTGATGCTGGTCTTGGAA+TGG | - | tig0021786:68828-68847 | Msa1394340:CDS | 50.0% |
| GGAATGGCCATGTTCAGTCT+AGG | - | tig0021786:68844-68863 | Msa1394340:CDS | 50.0% | |
| CAGCCTAAGCTGATTGCATG+TGG | - | tig0021786:68963-68982 | Msa1394340:CDS | 50.0% | |
| GCGGCAACCTCAATAGCAAT+TGG | - | tig0021786:69044-69063 | Msa1394340:CDS | 50.0% | |
| TGCATAAGAAGAGGGGAGGG+AGG | - | tig0021786:67761-67780 | Msa1394340:intron | 55.0% | |
| ! | GATGGACTTGGAAGGAGGAG+GGG | - | tig0021786:68368-68387 | Msa1394340:intron | 55.0% |
| CTTCCAAAGGGGCTACTCCG+AGG | - | tig0021786:67707-67726 | Msa1394340:CDS | 60.0% | |
| AGTCCTCGGAGTAGCCCCTT+TGG | + | tig0021786:67713-67732 | None:intergenic | 60.0% | |
| ! | AGGGGAGGGAGGAGTATGAG+TGG | - | tig0021786:67772-67791 | Msa1394340:intron | 60.0% |
| GACCGGTCCAGCTGTGATTG+CGG | - | tig0021786:69025-69044 | Msa1394340:CDS | 60.0% | |
| TGCCGCAATCACAGCTGGAC+CGG | + | tig0021786:69030-69049 | None:intergenic | 60.0% | |
| GAGGTTGCCGCAATCACAGC+TGG | + | tig0021786:69035-69054 | None:intergenic | 60.0% | |
| TTGCAGGCTGCACTTCCCCA+AGG | - | tig0021786:69203-69222 | Msa1394340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021786 | gene | 66830 | 69688 | 66830 | ID=Msa1394340;Name=Msa1394340 |
| tig0021786 | mRNA | 66830 | 69688 | 66830 | ID=Msa1394340-mRNA-1;Parent=Msa1394340;Name=Msa1394340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.83|1|1|1|6|218|625 |
| tig0021786 | exon | 66830 | 67114 | 66830 | ID=Msa1394340-mRNA-1:exon:14289;Parent=Msa1394340-mRNA-1 |
| tig0021786 | exon | 67233 | 67309 | 67233 | ID=Msa1394340-mRNA-1:exon:14288;Parent=Msa1394340-mRNA-1 |
| tig0021786 | exon | 67415 | 67572 | 67415 | ID=Msa1394340-mRNA-1:exon:14287;Parent=Msa1394340-mRNA-1 |
| tig0021786 | exon | 67653 | 67738 | 67653 | ID=Msa1394340-mRNA-1:exon:14286;Parent=Msa1394340-mRNA-1 |
| tig0021786 | exon | 67989 | 68241 | 67989 | ID=Msa1394340-mRNA-1:exon:14285;Parent=Msa1394340-mRNA-1 |
| tig0021786 | exon | 68452 | 69688 | 68452 | ID=Msa1394340-mRNA-1:exon:14284;Parent=Msa1394340-mRNA-1 |
| tig0021786 | CDS | 68452 | 69688 | 68452 | ID=Msa1394340-mRNA-1:cds;Parent=Msa1394340-mRNA-1 |
| tig0021786 | CDS | 67989 | 68241 | 67989 | ID=Msa1394340-mRNA-1:cds;Parent=Msa1394340-mRNA-1 |
| tig0021786 | CDS | 67653 | 67738 | 67653 | ID=Msa1394340-mRNA-1:cds;Parent=Msa1394340-mRNA-1 |
| tig0021786 | CDS | 67415 | 67572 | 67415 | ID=Msa1394340-mRNA-1:cds;Parent=Msa1394340-mRNA-1 |
| tig0021786 | CDS | 67233 | 67309 | 67233 | ID=Msa1394340-mRNA-1:cds;Parent=Msa1394340-mRNA-1 |
| tig0021786 | CDS | 67048 | 67114 | 67048 | ID=Msa1394340-mRNA-1:cds;Parent=Msa1394340-mRNA-1 |
| tig0021786 | three_prime_UTR | 66830 | 67047 | 66830 | ID=Msa1394340-mRNA-1:three_prime_utr;Parent=Msa1394340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
