Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642600 | XP_003606331.2 | 97.231 | 325 | 8 | 1 | 1 | 324 | 11 | 335 | 0.0 | 645 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642600 | sp|Q0V7X4|FIT_ARATH | 53.067 | 326 | 128 | 11 | 7 | 322 | 7 | 317 | 1.33e-96 | 291 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0642600 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0047120 | Msa0642600 | 0.810080 | 1.376735e-50 | -8.615850e-47 |
Msa0048950 | Msa0642600 | 0.803186 | 3.930508e-49 | -8.615850e-47 |
Msa0059880 | Msa0642600 | 0.812841 | 3.460468e-51 | -8.615850e-47 |
Msa0631700 | Msa0642600 | 0.806280 | 8.879488e-50 | -8.615850e-47 |
Msa0642600 | Msa0643840 | 0.819887 | 9.173298e-53 | -8.615850e-47 |
Msa0642600 | Msa0655430 | 0.831640 | 1.488168e-55 | -8.615850e-47 |
Msa0642600 | Msa0670360 | 0.823791 | 1.144851e-53 | -8.615850e-47 |
Msa0642600 | Msa0711230 | 0.810829 | 9.489923e-51 | -8.615850e-47 |
Msa0642600 | Msa0768670 | 0.822144 | 2.771719e-53 | -8.615850e-47 |
Msa0642600 | Msa0768720 | 0.822583 | 2.192254e-53 | -8.615850e-47 |
Msa0642600 | Msa0910830 | 0.806241 | 9.049266e-50 | -8.615850e-47 |
Msa0642600 | Msa1021620 | 0.818670 | 1.736414e-52 | -8.615850e-47 |
Msa0642600 | Msa1022490 | 0.800270 | 1.558989e-48 | -8.615850e-47 |
Msa0642600 | Msa1022510 | 0.805678 | 1.188516e-49 | -8.615850e-47 |
Msa0642600 | Msa1061670 | 0.819676 | 1.024889e-52 | -8.615850e-47 |
Msa0642600 | Msa1106680 | 0.817656 | 2.944467e-52 | -8.615850e-47 |
Msa0642600 | Msa1106960 | 0.818819 | 1.606506e-52 | -8.615850e-47 |
Msa0642600 | Msa1109880 | 0.813193 | 2.897768e-51 | -8.615850e-47 |
Msa0642600 | Msa1370970 | 0.808304 | 3.307573e-50 | -8.615850e-47 |
Msa0177550 | Msa0642600 | 0.805640 | 1.210750e-49 | -8.615850e-47 |
Msa0223880 | Msa0642600 | 0.804722 | 1.884311e-49 | -8.615850e-47 |
Msa0291090 | Msa0642600 | 0.800641 | 1.310380e-48 | -8.615850e-47 |
Msa0329650 | Msa0642600 | 0.813021 | 3.160852e-51 | -8.615850e-47 |
Msa0340650 | Msa0642600 | 0.805012 | 1.639431e-49 | -8.615850e-47 |
Msa0535570 | Msa0642600 | 0.814793 | 1.285476e-51 | -8.615850e-47 |
Msa0562050 | Msa0642600 | 0.817065 | 4.000814e-52 | -8.615850e-47 |
Msa0591490 | Msa0642600 | 0.800873 | 1.174983e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642600 | MtrunA17_Chr4g0028071 | 97.231 | 325 | 8 | 1 | 1 | 324 | 11 | 335 | 0.0 | 645 |
Msa0642600 | MtrunA17_Chr2g0320291 | 64.263 | 319 | 91 | 9 | 13 | 322 | 9 | 313 | 3.00e-131 | 376 |
Msa0642600 | MtrunA17_Chr8g0365711 | 30.412 | 194 | 108 | 5 | 129 | 308 | 235 | 415 | 3.50e-20 | 90.5 |
Msa0642600 | MtrunA17_Chr1g0211081 | 32.432 | 148 | 73 | 3 | 129 | 249 | 308 | 455 | 1.28e-17 | 83.6 |
Msa0642600 | MtrunA17_Chr2g0298751 | 32.099 | 162 | 97 | 4 | 137 | 286 | 51 | 211 | 6.56e-17 | 79.0 |
Msa0642600 | MtrunA17_Chr8g0366751 | 30.460 | 174 | 107 | 5 | 131 | 291 | 452 | 624 | 2.56e-16 | 79.7 |
Msa0642600 | MtrunA17_Chr3g0131691 | 39.796 | 98 | 53 | 1 | 102 | 199 | 268 | 359 | 2.63e-15 | 76.3 |
Msa0642600 | MtrunA17_Chr4g0048851 | 32.278 | 158 | 90 | 5 | 137 | 289 | 46 | 191 | 3.76e-15 | 73.2 |
Msa0642600 | MtrunA17_Chr5g0411341 | 30.667 | 150 | 93 | 3 | 142 | 281 | 497 | 645 | 1.53e-14 | 74.3 |
Msa0642600 | MtrunA17_Chr4g0054571 | 30.827 | 133 | 86 | 2 | 140 | 266 | 152 | 284 | 1.19e-13 | 70.9 |
Msa0642600 | MtrunA17_Chr7g0252041 | 53.448 | 58 | 27 | 0 | 137 | 194 | 285 | 342 | 1.79e-13 | 70.9 |
Msa0642600 | MtrunA17_Chr8g0346161 | 28.571 | 203 | 105 | 7 | 103 | 281 | 247 | 433 | 2.50e-13 | 70.5 |
Msa0642600 | MtrunA17_Chr7g0275821 | 51.923 | 52 | 25 | 0 | 142 | 193 | 256 | 307 | 4.30e-13 | 69.7 |
Msa0642600 | MtrunA17_Chr2g0280161 | 27.465 | 142 | 99 | 3 | 127 | 266 | 166 | 305 | 3.28e-12 | 66.6 |
Msa0642600 | MtrunA17_Chr7g0225901 | 26.201 | 229 | 122 | 10 | 69 | 276 | 23 | 225 | 4.90e-12 | 65.1 |
Msa0642600 | MtrunA17_Chr8g0346151 | 36.458 | 96 | 52 | 2 | 105 | 191 | 237 | 332 | 2.31e-11 | 64.3 |
Msa0642600 | MtrunA17_Chr7g0260841 | 43.939 | 66 | 34 | 1 | 131 | 193 | 345 | 410 | 3.23e-11 | 63.9 |
Msa0642600 | MtrunA17_Chr4g0054561 | 34.444 | 90 | 47 | 2 | 140 | 227 | 157 | 236 | 5.99e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642600 | AT2G28160.1 | 53.067 | 326 | 128 | 11 | 7 | 322 | 7 | 317 | 1.35e-97 | 291 |
Msa0642600 | AT2G28160.2 | 52.188 | 320 | 128 | 11 | 7 | 316 | 7 | 311 | 4.70e-93 | 279 |
Msa0642600 | AT5G57150.5 | 39.490 | 157 | 85 | 4 | 137 | 285 | 53 | 207 | 2.05e-23 | 96.7 |
Msa0642600 | AT5G57150.2 | 39.490 | 157 | 85 | 4 | 137 | 285 | 54 | 208 | 2.17e-23 | 96.7 |
Msa0642600 | AT5G57150.3 | 39.490 | 157 | 85 | 4 | 137 | 285 | 54 | 208 | 2.26e-23 | 96.3 |
Msa0642600 | AT5G57150.1 | 39.490 | 157 | 85 | 4 | 137 | 285 | 53 | 207 | 3.36e-23 | 96.7 |
Msa0642600 | AT5G57150.4 | 39.490 | 157 | 85 | 4 | 137 | 285 | 54 | 208 | 8.14e-23 | 95.9 |
Msa0642600 | AT2G16910.1 | 36.416 | 173 | 84 | 5 | 136 | 283 | 312 | 483 | 4.81e-22 | 97.1 |
Msa0642600 | AT4G29930.6 | 33.544 | 158 | 96 | 3 | 137 | 293 | 53 | 202 | 1.72e-21 | 91.7 |
Msa0642600 | AT4G29930.5 | 34.194 | 155 | 92 | 3 | 137 | 291 | 53 | 197 | 5.23e-21 | 90.5 |
Msa0642600 | AT4G29930.2 | 33.121 | 157 | 95 | 3 | 137 | 293 | 53 | 199 | 1.55e-20 | 89.0 |
Msa0642600 | AT4G29930.3 | 33.516 | 182 | 86 | 5 | 137 | 291 | 53 | 226 | 9.07e-20 | 87.4 |
Msa0642600 | AT4G29930.7 | 33.516 | 182 | 86 | 5 | 137 | 291 | 53 | 226 | 9.07e-20 | 87.4 |
Msa0642600 | AT4G29930.1 | 34.320 | 169 | 76 | 5 | 137 | 278 | 53 | 213 | 2.49e-19 | 86.3 |
Msa0642600 | AT4G29930.4 | 41.284 | 109 | 46 | 3 | 137 | 234 | 53 | 154 | 1.75e-17 | 79.3 |
Msa0642600 | AT1G01260.1 | 30.093 | 216 | 103 | 6 | 80 | 287 | 383 | 558 | 1.80e-15 | 77.4 |
Msa0642600 | AT1G01260.2 | 30.093 | 216 | 103 | 6 | 80 | 287 | 383 | 558 | 1.80e-15 | 77.4 |
Msa0642600 | AT1G01260.3 | 30.093 | 216 | 103 | 6 | 80 | 287 | 383 | 558 | 1.80e-15 | 77.4 |
Msa0642600 | AT1G10610.3 | 34.167 | 120 | 76 | 2 | 132 | 248 | 161 | 280 | 3.58e-15 | 75.9 |
Msa0642600 | AT4G17880.1 | 30.714 | 140 | 95 | 2 | 142 | 281 | 420 | 557 | 4.28e-15 | 76.3 |
Msa0642600 | AT1G10610.2 | 34.167 | 120 | 76 | 2 | 132 | 248 | 228 | 347 | 5.47e-15 | 75.5 |
Msa0642600 | AT1G10610.1 | 34.167 | 120 | 76 | 2 | 132 | 248 | 258 | 377 | 6.44e-15 | 75.5 |
Msa0642600 | AT2G46510.1 | 48.101 | 79 | 38 | 1 | 131 | 206 | 385 | 463 | 9.45e-15 | 75.5 |
Msa0642600 | AT5G46760.1 | 29.167 | 144 | 96 | 4 | 142 | 281 | 419 | 560 | 1.83e-14 | 74.3 |
Msa0642600 | AT1G12860.2 | 51.724 | 58 | 28 | 0 | 137 | 194 | 266 | 323 | 1.56e-13 | 71.2 |
Msa0642600 | AT1G12860.1 | 51.724 | 58 | 28 | 0 | 137 | 194 | 266 | 323 | 1.70e-13 | 71.2 |
Msa0642600 | AT3G26744.1 | 40.000 | 95 | 52 | 1 | 100 | 194 | 274 | 363 | 2.64e-13 | 70.9 |
Msa0642600 | AT3G26744.4 | 40.000 | 95 | 52 | 1 | 100 | 194 | 274 | 363 | 2.64e-13 | 70.9 |
Msa0642600 | AT3G26744.2 | 40.000 | 95 | 52 | 1 | 100 | 194 | 274 | 363 | 2.64e-13 | 70.9 |
Msa0642600 | AT3G26744.6 | 40.000 | 95 | 52 | 1 | 100 | 194 | 274 | 363 | 2.73e-13 | 70.9 |
Msa0642600 | AT1G32640.1 | 30.573 | 157 | 99 | 5 | 131 | 281 | 442 | 594 | 3.35e-13 | 70.9 |
Msa0642600 | AT4G21330.1 | 26.178 | 191 | 132 | 5 | 106 | 293 | 4 | 188 | 6.56e-13 | 67.4 |
Msa0642600 | AT5G46830.1 | 28.662 | 157 | 94 | 4 | 142 | 292 | 347 | 491 | 2.28e-11 | 65.1 |
Msa0642600 | AT2G22760.2 | 26.943 | 193 | 112 | 7 | 110 | 284 | 85 | 266 | 9.39e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCTCTGCTTTAAGTTTCT+TGG | 0.143972 | 4_3:-44355509 | None:intergenic |
CAATGTTCAGAATTCAAATT+TGG | 0.160318 | 4_3:+44355864 | Msa0642600:CDS |
AAATTTGGCAGGTTGATTTC+TGG | 0.184628 | 4_3:-44356224 | None:intergenic |
CAAAACTTTGATTCATTATA+AGG | 0.232350 | 4_3:-44354676 | None:intergenic |
ATCACCCATAGCTTTAAATT+TGG | 0.237169 | 4_3:-44356239 | None:intergenic |
AATTGATCCTTGATGAGTTT+TGG | 0.240491 | 4_3:-44355560 | None:intergenic |
TGTTAAAATAGTATGCAATA+AGG | 0.282684 | 4_3:+44355789 | Msa0642600:CDS |
GAAGTGTACCTTAGTTATAT+TGG | 0.288057 | 4_3:-44355014 | None:intergenic |
GCTTTACGCATTGCGTTCTT+TGG | 0.305835 | 4_3:+44354988 | Msa0642600:CDS |
TTGATGAATTGATCAAAGTT+TGG | 0.317687 | 4_3:-44354599 | None:intergenic |
AAGTGTACCTTAGTTATATT+GGG | 0.358633 | 4_3:-44355013 | None:intergenic |
TTATCTATGTTGTGATCAAA+TGG | 0.384556 | 4_3:-44354731 | None:intergenic |
ACCTGCCAAATTTAAAGCTA+TGG | 0.396521 | 4_3:+44356234 | Msa0642600:CDS |
CAATTCATCAATTTGATTCG+TGG | 0.404944 | 4_3:+44354611 | Msa0642600:CDS |
CGTAAAGCTTATCCTTCATT+CGG | 0.412112 | 4_3:-44354973 | None:intergenic |
AAACTTAAAGCAGAGGTTGC+AGG | 0.414303 | 4_3:+44355514 | Msa0642600:CDS |
ATTATATGTATAGATGGATA+AGG | 0.414631 | 4_3:+44355435 | Msa0642600:intron |
GTTAAAATAGTATGCAATAA+GGG | 0.416472 | 4_3:+44355790 | Msa0642600:CDS |
ATGGATAAGGCTTCTATCAT+TGG | 0.423797 | 4_3:+44355448 | Msa0642600:CDS |
CCCATAGCTTTAAATTTGGC+AGG | 0.425488 | 4_3:-44356235 | None:intergenic |
TTTGGTTCCCAATATAACTA+AGG | 0.432332 | 4_3:+44355006 | Msa0642600:CDS |
TTTGATCCTACTTCTTCACT+TGG | 0.449750 | 4_3:+44354767 | Msa0642600:CDS |
AAGGTATGAATTCAAAGCCT+TGG | 0.451801 | 4_3:-44356277 | None:intergenic |
TGAAAATAGGTGAAAGACTC+TGG | 0.451976 | 4_3:+44356200 | Msa0642600:intron |
TTAATGTTTGCTAGTGTCAC+TGG | 0.460746 | 4_3:-44354542 | None:intergenic |
TAGTATGCAATAAGGGAGAA+AGG | 0.463194 | 4_3:+44355797 | Msa0642600:CDS |
AATATGCAAGAAAATTGTCC+AGG | 0.466755 | 4_3:+44355624 | Msa0642600:CDS |
CTTTGGTTTCTGAGAGGAGG+AGG | 0.467532 | 4_3:+44354945 | Msa0642600:CDS |
AAATGATAGATCCAAGACTT+TGG | 0.473297 | 4_3:+44354928 | Msa0642600:CDS |
ATGTTGTGATCAAATGGGTT+TGG | 0.479555 | 4_3:-44354725 | None:intergenic |
AATTTGGCCACTGTTTCTGA+TGG | 0.483700 | 4_3:+44355880 | Msa0642600:CDS |
TATCTATGTTGTGATCAAAT+GGG | 0.486497 | 4_3:-44354730 | None:intergenic |
CCTCTCAGAAACCAAAGTCT+TGG | 0.490550 | 4_3:-44354939 | None:intergenic |
CATCAATTTGATTCGTGGTG+AGG | 0.496224 | 4_3:+44354616 | Msa0642600:CDS |
ATGTGTCAAGCGTGAAAAGA+AGG | 0.518768 | 4_3:-44356296 | None:intergenic |
ATGTTTCAAGTGGATGAAAG+AGG | 0.519776 | 4_3:+44355760 | Msa0642600:CDS |
AGTATGCAATAAGGGAGAAA+GGG | 0.525003 | 4_3:+44355798 | Msa0642600:CDS |
CCTGCCAAATTTAAAGCTAT+GGG | 0.525800 | 4_3:+44356235 | Msa0642600:CDS |
AAAGAACCAAGTGAAGAAGT+AGG | 0.527298 | 4_3:-44354773 | None:intergenic |
TGTTGTTGTTGTTGCTGGAG+AGG | 0.528446 | 4_3:-44354858 | None:intergenic |
GAGGAGGCGAAGCCGAATGA+AGG | 0.530731 | 4_3:+44354961 | Msa0642600:CDS |
TGTTTCAAGTGGATGAAAGA+GGG | 0.533128 | 4_3:+44355761 | Msa0642600:CDS |
ATCACCACTTGTAGTTGTTG+TGG | 0.544215 | 4_3:-44354888 | None:intergenic |
TTGTGATCAAATGGGTTTGG+AGG | 0.546978 | 4_3:-44354722 | None:intergenic |
AGACTTTGGTTTCTGAGAGG+AGG | 0.567716 | 4_3:+44354942 | Msa0642600:CDS |
GTAGATTGATATGTTTCAAG+TGG | 0.578490 | 4_3:+44355750 | Msa0642600:intron |
ATTCAATTCACTAACAACAA+TGG | 0.601953 | 4_3:+44355598 | Msa0642600:CDS |
CCAAGACTTTGGTTTCTGAG+AGG | 0.603254 | 4_3:+44354939 | Msa0642600:CDS |
GAATTAAGAGTAGAAAATGA+TGG | 0.612562 | 4_3:+44354824 | Msa0642600:CDS |
GTAGTGTCCAAAACTCATCA+AGG | 0.616981 | 4_3:+44355553 | Msa0642600:CDS |
ATTACCACAACAACTACAAG+TGG | 0.626061 | 4_3:+44354884 | Msa0642600:CDS |
ATGGGTTTGGAGGAAATGAA+AGG | 0.630120 | 4_3:-44354712 | None:intergenic |
TAGAAAACCATCAGAAACAG+TGG | 0.631132 | 4_3:-44355887 | None:intergenic |
AGCCAAGAAACTTAAAGCAG+AGG | 0.631149 | 4_3:+44355507 | Msa0642600:CDS |
ATGCAATAAGGGAGAAAGGG+TGG | 0.649433 | 4_3:+44355801 | Msa0642600:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTAATTATATGTATAGA+TGG | + | chr4_3:44355429-44355448 | Msa0642600:intron | 10.0% |
!! | TATTTAATTATATGTATAGA+TGG | + | chr4_3:44355429-44355448 | Msa0642600:intron | 10.0% |
!!! | TTAGTGAATTGAATTTTTTT+GGG | - | chr4_3:44355592-44355611 | None:intergenic | 15.0% |
!! | TATATTTAACCTTAAATAGA+GGG | - | chr4_3:44355943-44355962 | None:intergenic | 15.0% |
!! | ATATATTTAACCTTAAATAG+AGG | - | chr4_3:44355944-44355963 | None:intergenic | 15.0% |
!!! | AAACAAAATTACATGATTTT+AGG | + | chr4_3:44356029-44356048 | Msa0642600:intron | 15.0% |
!!! | TTTTTATTACCATAACATTT+AGG | - | chr4_3:44356116-44356135 | None:intergenic | 15.0% |
!!! | TTAGTGAATTGAATTTTTTT+GGG | - | chr4_3:44355592-44355611 | None:intergenic | 15.0% |
!! | TATATTTAACCTTAAATAGA+GGG | - | chr4_3:44355943-44355962 | None:intergenic | 15.0% |
!! | ATATATTTAACCTTAAATAG+AGG | - | chr4_3:44355944-44355963 | None:intergenic | 15.0% |
!!! | AAACAAAATTACATGATTTT+AGG | + | chr4_3:44356029-44356048 | Msa0642600:intron | 15.0% |
!!! | TTTTTATTACCATAACATTT+AGG | - | chr4_3:44356116-44356135 | None:intergenic | 15.0% |
!! | CAAAACTTTGATTCATTATA+AGG | - | chr4_3:44354679-44354698 | None:intergenic | 20.0% |
!!! | AGCAATTTTCATCTTATAAA+TGG | - | chr4_3:44355230-44355249 | None:intergenic | 20.0% |
!! | TTATAAGATGAAAATTGCTT+CGG | + | chr4_3:44355231-44355250 | Msa0642600:intron | 20.0% |
!!! | TATTTTGGATAGTAACATAT+AGG | - | chr4_3:44355276-44355295 | None:intergenic | 20.0% |
!!! | ACAATGAATCTTAACTATTT+TGG | - | chr4_3:44355291-44355310 | None:intergenic | 20.0% |
!! | ATTATATGTATAGATGGATA+AGG | + | chr4_3:44355435-44355454 | Msa0642600:intron | 20.0% |
!!! | TAGTGAATTGAATTTTTTTG+GGG | - | chr4_3:44355591-44355610 | None:intergenic | 20.0% |
!!! | GTTAGTGAATTGAATTTTTT+TGG | - | chr4_3:44355593-44355612 | None:intergenic | 20.0% |
!!! | ATTGTAATTTGTAACATCTT+TGG | + | chr4_3:44355715-44355734 | Msa0642600:intron | 20.0% |
!! | TGTTAAAATAGTATGCAATA+AGG | + | chr4_3:44355789-44355808 | Msa0642600:CDS | 20.0% |
!! | GTTAAAATAGTATGCAATAA+GGG | + | chr4_3:44355790-44355809 | Msa0642600:CDS | 20.0% |
!! | CTAAAAAAACCTAAATGTTA+TGG | + | chr4_3:44356104-44356123 | Msa0642600:intron | 20.0% |
!! | CAAAACTTTGATTCATTATA+AGG | - | chr4_3:44354679-44354698 | None:intergenic | 20.0% |
!!! | AGCAATTTTCATCTTATAAA+TGG | - | chr4_3:44355230-44355249 | None:intergenic | 20.0% |
!! | TTATAAGATGAAAATTGCTT+CGG | + | chr4_3:44355231-44355250 | Msa0642600:intron | 20.0% |
!!! | TATTTTGGATAGTAACATAT+AGG | - | chr4_3:44355276-44355295 | None:intergenic | 20.0% |
!!! | ACAATGAATCTTAACTATTT+TGG | - | chr4_3:44355291-44355310 | None:intergenic | 20.0% |
!! | ATTATATGTATAGATGGATA+AGG | + | chr4_3:44355435-44355454 | Msa0642600:intron | 20.0% |
!!! | TAGTGAATTGAATTTTTTTG+GGG | - | chr4_3:44355591-44355610 | None:intergenic | 20.0% |
!!! | GTTAGTGAATTGAATTTTTT+TGG | - | chr4_3:44355593-44355612 | None:intergenic | 20.0% |
!!! | ATTGTAATTTGTAACATCTT+TGG | + | chr4_3:44355715-44355734 | Msa0642600:intron | 20.0% |
!! | TGTTAAAATAGTATGCAATA+AGG | + | chr4_3:44355789-44355808 | Msa0642600:CDS | 20.0% |
!! | GTTAAAATAGTATGCAATAA+GGG | + | chr4_3:44355790-44355809 | Msa0642600:CDS | 20.0% |
!! | CTAAAAAAACCTAAATGTTA+TGG | + | chr4_3:44356104-44356123 | Msa0642600:intron | 20.0% |
! | TTGATGAATTGATCAAAGTT+TGG | - | chr4_3:44354602-44354621 | None:intergenic | 25.0% |
! | TATCTATGTTGTGATCAAAT+GGG | - | chr4_3:44354733-44354752 | None:intergenic | 25.0% |
! | TTATCTATGTTGTGATCAAA+TGG | - | chr4_3:44354734-44354753 | None:intergenic | 25.0% |
! | GAATTAAGAGTAGAAAATGA+TGG | + | chr4_3:44354824-44354843 | Msa0642600:CDS | 25.0% |
! | AAGTGTACCTTAGTTATATT+GGG | - | chr4_3:44355016-44355035 | None:intergenic | 25.0% |
!!! | ATGGTTTTAAATTGTTGTTG+CGG | + | chr4_3:44355037-44355056 | Msa0642600:intron | 25.0% |
!! | TTTATCATAATTTGAAGCAG+CGG | - | chr4_3:44355161-44355180 | None:intergenic | 25.0% |
! | ATGCTTGTATGAAATTTACA+AGG | - | chr4_3:44355326-44355345 | None:intergenic | 25.0% |
! | ATTCAATTCACTAACAACAA+TGG | + | chr4_3:44355598-44355617 | Msa0642600:CDS | 25.0% |
! | AGATATTTATCAAACAAACC+TGG | - | chr4_3:44355645-44355664 | None:intergenic | 25.0% |
! | CAATGTTCAGAATTCAAATT+TGG | + | chr4_3:44355864-44355883 | Msa0642600:CDS | 25.0% |
!!! | GTAATTTTGTTTTGTAGAGA+CGG | - | chr4_3:44356021-44356040 | None:intergenic | 25.0% |
! | CAGCTAATGAAATAGAATAA+TGG | - | chr4_3:44356149-44356168 | None:intergenic | 25.0% |
! | CATGCTTATTATGTGAAAAT+AGG | + | chr4_3:44356187-44356206 | Msa0642600:intron | 25.0% |
! | TTGATGAATTGATCAAAGTT+TGG | - | chr4_3:44354602-44354621 | None:intergenic | 25.0% |
! | TATCTATGTTGTGATCAAAT+GGG | - | chr4_3:44354733-44354752 | None:intergenic | 25.0% |
! | TTATCTATGTTGTGATCAAA+TGG | - | chr4_3:44354734-44354753 | None:intergenic | 25.0% |
! | GAATTAAGAGTAGAAAATGA+TGG | + | chr4_3:44354824-44354843 | Msa0642600:CDS | 25.0% |
! | AAGTGTACCTTAGTTATATT+GGG | - | chr4_3:44355016-44355035 | None:intergenic | 25.0% |
!!! | ATGGTTTTAAATTGTTGTTG+CGG | + | chr4_3:44355037-44355056 | Msa0642600:intron | 25.0% |
!! | TTTATCATAATTTGAAGCAG+CGG | - | chr4_3:44355161-44355180 | None:intergenic | 25.0% |
! | ATGCTTGTATGAAATTTACA+AGG | - | chr4_3:44355326-44355345 | None:intergenic | 25.0% |
! | ATTCAATTCACTAACAACAA+TGG | + | chr4_3:44355598-44355617 | Msa0642600:CDS | 25.0% |
! | AGATATTTATCAAACAAACC+TGG | - | chr4_3:44355645-44355664 | None:intergenic | 25.0% |
! | CAATGTTCAGAATTCAAATT+TGG | + | chr4_3:44355864-44355883 | Msa0642600:CDS | 25.0% |
!!! | GTAATTTTGTTTTGTAGAGA+CGG | - | chr4_3:44356021-44356040 | None:intergenic | 25.0% |
! | CAGCTAATGAAATAGAATAA+TGG | - | chr4_3:44356149-44356168 | None:intergenic | 25.0% |
! | CATGCTTATTATGTGAAAAT+AGG | + | chr4_3:44356187-44356206 | Msa0642600:intron | 25.0% |
! | CAATTCATCAATTTGATTCG+TGG | + | chr4_3:44354611-44354630 | Msa0642600:CDS | 30.0% |
!! | GATCTATCATTTTTCGACTT+TGG | - | chr4_3:44354920-44354939 | None:intergenic | 30.0% |
AAATGATAGATCCAAGACTT+TGG | + | chr4_3:44354928-44354947 | Msa0642600:CDS | 30.0% | |
! | TTTGGTTCCCAATATAACTA+AGG | + | chr4_3:44355006-44355025 | Msa0642600:CDS | 30.0% |
GAAGTGTACCTTAGTTATAT+TGG | - | chr4_3:44355017-44355036 | None:intergenic | 30.0% | |
TATAACTAAGGTACACTTCA+TGG | + | chr4_3:44355018-44355037 | Msa0642600:intron | 30.0% | |
TTTGGCACAATATAAAGGTT+TGG | - | chr4_3:44355070-44355089 | None:intergenic | 30.0% | |
!! | GACATTTTGGCACAATATAA+AGG | - | chr4_3:44355075-44355094 | None:intergenic | 30.0% |
!! | GAGAAATTTTGACGACATTT+TGG | - | chr4_3:44355088-44355107 | None:intergenic | 30.0% |
ATTTCTCTTGTGAAACCATT+AGG | + | chr4_3:44355101-44355120 | Msa0642600:intron | 30.0% | |
TTTCTCTTGTGAAACCATTA+GGG | + | chr4_3:44355102-44355121 | Msa0642600:intron | 30.0% | |
! | AATTGATCCTTGATGAGTTT+TGG | - | chr4_3:44355563-44355582 | None:intergenic | 30.0% |
AATATGCAAGAAAATTGTCC+AGG | + | chr4_3:44355624-44355643 | Msa0642600:CDS | 30.0% | |
ATTTGTAACATCTTTGGATG+TGG | + | chr4_3:44355721-44355740 | Msa0642600:intron | 30.0% | |
GTAGATTGATATGTTTCAAG+TGG | + | chr4_3:44355750-44355769 | Msa0642600:intron | 30.0% | |
AGCTATATTCCCTCTATTTA+AGG | + | chr4_3:44355931-44355950 | Msa0642600:intron | 30.0% | |
AATTCGTAGAGACTAAAAAG+TGG | + | chr4_3:44356073-44356092 | Msa0642600:intron | 30.0% | |
!! | ATCACCCATAGCTTTAAATT+TGG | - | chr4_3:44356242-44356261 | None:intergenic | 30.0% |
! | CAATTCATCAATTTGATTCG+TGG | + | chr4_3:44354611-44354630 | Msa0642600:CDS | 30.0% |
!! | GATCTATCATTTTTCGACTT+TGG | - | chr4_3:44354920-44354939 | None:intergenic | 30.0% |
AAATGATAGATCCAAGACTT+TGG | + | chr4_3:44354928-44354947 | Msa0642600:CDS | 30.0% | |
! | TTTGGTTCCCAATATAACTA+AGG | + | chr4_3:44355006-44355025 | Msa0642600:CDS | 30.0% |
GAAGTGTACCTTAGTTATAT+TGG | - | chr4_3:44355017-44355036 | None:intergenic | 30.0% | |
TATAACTAAGGTACACTTCA+TGG | + | chr4_3:44355018-44355037 | Msa0642600:intron | 30.0% | |
TTTGGCACAATATAAAGGTT+TGG | - | chr4_3:44355070-44355089 | None:intergenic | 30.0% | |
!! | GACATTTTGGCACAATATAA+AGG | - | chr4_3:44355075-44355094 | None:intergenic | 30.0% |
!! | GAGAAATTTTGACGACATTT+TGG | - | chr4_3:44355088-44355107 | None:intergenic | 30.0% |
ATTTCTCTTGTGAAACCATT+AGG | + | chr4_3:44355101-44355120 | Msa0642600:intron | 30.0% | |
TTTCTCTTGTGAAACCATTA+GGG | + | chr4_3:44355102-44355121 | Msa0642600:intron | 30.0% | |
! | AATTGATCCTTGATGAGTTT+TGG | - | chr4_3:44355563-44355582 | None:intergenic | 30.0% |
AATATGCAAGAAAATTGTCC+AGG | + | chr4_3:44355624-44355643 | Msa0642600:CDS | 30.0% | |
ATTTGTAACATCTTTGGATG+TGG | + | chr4_3:44355721-44355740 | Msa0642600:intron | 30.0% | |
GTAGATTGATATGTTTCAAG+TGG | + | chr4_3:44355750-44355769 | Msa0642600:intron | 30.0% | |
AGCTATATTCCCTCTATTTA+AGG | + | chr4_3:44355931-44355950 | Msa0642600:intron | 30.0% | |
AATTCGTAGAGACTAAAAAG+TGG | + | chr4_3:44356073-44356092 | Msa0642600:intron | 30.0% | |
!! | ATCACCCATAGCTTTAAATT+TGG | - | chr4_3:44356242-44356261 | None:intergenic | 30.0% |
! | TTAATGTTTGCTAGTGTCAC+TGG | - | chr4_3:44354545-44354564 | None:intergenic | 35.0% |
! | ATGTTGTGATCAAATGGGTT+TGG | - | chr4_3:44354728-44354747 | None:intergenic | 35.0% |
TTTGATCCTACTTCTTCACT+TGG | + | chr4_3:44354767-44354786 | Msa0642600:CDS | 35.0% | |
AAAGAACCAAGTGAAGAAGT+AGG | - | chr4_3:44354776-44354795 | None:intergenic | 35.0% | |
!!! | GGTTCTTTCTCTTGTTTTGA+TGG | + | chr4_3:44354788-44354807 | Msa0642600:CDS | 35.0% |
!!! | TTGTTTTGATGGAGAAGCTA+AGG | + | chr4_3:44354799-44354818 | Msa0642600:CDS | 35.0% |
!!! | TGTTTTGATGGAGAAGCTAA+GGG | + | chr4_3:44354800-44354819 | Msa0642600:CDS | 35.0% |
ATTACCACAACAACTACAAG+TGG | + | chr4_3:44354884-44354903 | Msa0642600:CDS | 35.0% | |
CGTAAAGCTTATCCTTCATT+CGG | - | chr4_3:44354976-44354995 | None:intergenic | 35.0% | |
!!! | AGATTTTGAAGTCTCCCTAA+TGG | - | chr4_3:44355119-44355138 | None:intergenic | 35.0% |
GTAACATATAGGCTGAATAG+TGG | - | chr4_3:44355265-44355284 | None:intergenic | 35.0% | |
ATGGATAAGGCTTCTATCAT+TGG | + | chr4_3:44355448-44355467 | Msa0642600:CDS | 35.0% | |
! | AACCTCTGCTTTAAGTTTCT+TGG | - | chr4_3:44355512-44355531 | None:intergenic | 35.0% |
! | ATGTTTCAAGTGGATGAAAG+AGG | + | chr4_3:44355760-44355779 | Msa0642600:CDS | 35.0% |
! | TGTTTCAAGTGGATGAAAGA+GGG | + | chr4_3:44355761-44355780 | Msa0642600:CDS | 35.0% |
TAGTATGCAATAAGGGAGAA+AGG | + | chr4_3:44355797-44355816 | Msa0642600:CDS | 35.0% | |
AGTATGCAATAAGGGAGAAA+GGG | + | chr4_3:44355798-44355817 | Msa0642600:CDS | 35.0% | |
TAGAAAACCATCAGAAACAG+TGG | - | chr4_3:44355890-44355909 | None:intergenic | 35.0% | |
TGAAAATAGGTGAAAGACTC+TGG | + | chr4_3:44356200-44356219 | Msa0642600:intron | 35.0% | |
!! | AAATTTGGCAGGTTGATTTC+TGG | - | chr4_3:44356227-44356246 | None:intergenic | 35.0% |
! | ACCTGCCAAATTTAAAGCTA+TGG | + | chr4_3:44356234-44356253 | Msa0642600:CDS | 35.0% |
! | CCTGCCAAATTTAAAGCTAT+GGG | + | chr4_3:44356235-44356254 | Msa0642600:CDS | 35.0% |
! | ATCAGTGCTTTTCTAAACCA+AGG | + | chr4_3:44356260-44356279 | Msa0642600:CDS | 35.0% |
AAGGTATGAATTCAAAGCCT+TGG | - | chr4_3:44356280-44356299 | None:intergenic | 35.0% | |
! | TTAATGTTTGCTAGTGTCAC+TGG | - | chr4_3:44354545-44354564 | None:intergenic | 35.0% |
! | ATGTTGTGATCAAATGGGTT+TGG | - | chr4_3:44354728-44354747 | None:intergenic | 35.0% |
TTTGATCCTACTTCTTCACT+TGG | + | chr4_3:44354767-44354786 | Msa0642600:CDS | 35.0% | |
AAAGAACCAAGTGAAGAAGT+AGG | - | chr4_3:44354776-44354795 | None:intergenic | 35.0% | |
!!! | GGTTCTTTCTCTTGTTTTGA+TGG | + | chr4_3:44354788-44354807 | Msa0642600:CDS | 35.0% |
!!! | TTGTTTTGATGGAGAAGCTA+AGG | + | chr4_3:44354799-44354818 | Msa0642600:CDS | 35.0% |
!!! | TGTTTTGATGGAGAAGCTAA+GGG | + | chr4_3:44354800-44354819 | Msa0642600:CDS | 35.0% |
ATTACCACAACAACTACAAG+TGG | + | chr4_3:44354884-44354903 | Msa0642600:CDS | 35.0% | |
CGTAAAGCTTATCCTTCATT+CGG | - | chr4_3:44354976-44354995 | None:intergenic | 35.0% | |
!!! | AGATTTTGAAGTCTCCCTAA+TGG | - | chr4_3:44355119-44355138 | None:intergenic | 35.0% |
GTAACATATAGGCTGAATAG+TGG | - | chr4_3:44355265-44355284 | None:intergenic | 35.0% | |
ATGGATAAGGCTTCTATCAT+TGG | + | chr4_3:44355448-44355467 | Msa0642600:CDS | 35.0% | |
! | AACCTCTGCTTTAAGTTTCT+TGG | - | chr4_3:44355512-44355531 | None:intergenic | 35.0% |
! | ATGTTTCAAGTGGATGAAAG+AGG | + | chr4_3:44355760-44355779 | Msa0642600:CDS | 35.0% |
! | TGTTTCAAGTGGATGAAAGA+GGG | + | chr4_3:44355761-44355780 | Msa0642600:CDS | 35.0% |
TAGTATGCAATAAGGGAGAA+AGG | + | chr4_3:44355797-44355816 | Msa0642600:CDS | 35.0% | |
AGTATGCAATAAGGGAGAAA+GGG | + | chr4_3:44355798-44355817 | Msa0642600:CDS | 35.0% | |
TAGAAAACCATCAGAAACAG+TGG | - | chr4_3:44355890-44355909 | None:intergenic | 35.0% | |
TGAAAATAGGTGAAAGACTC+TGG | + | chr4_3:44356200-44356219 | Msa0642600:intron | 35.0% | |
!! | AAATTTGGCAGGTTGATTTC+TGG | - | chr4_3:44356227-44356246 | None:intergenic | 35.0% |
! | ACCTGCCAAATTTAAAGCTA+TGG | + | chr4_3:44356234-44356253 | Msa0642600:CDS | 35.0% |
! | CCTGCCAAATTTAAAGCTAT+GGG | + | chr4_3:44356235-44356254 | Msa0642600:CDS | 35.0% |
! | ATCAGTGCTTTTCTAAACCA+AGG | + | chr4_3:44356260-44356279 | Msa0642600:CDS | 35.0% |
AAGGTATGAATTCAAAGCCT+TGG | - | chr4_3:44356280-44356299 | None:intergenic | 35.0% | |
! | CATCAATTTGATTCGTGGTG+AGG | + | chr4_3:44354616-44354635 | Msa0642600:CDS | 40.0% |
ATGGGTTTGGAGGAAATGAA+AGG | - | chr4_3:44354715-44354734 | None:intergenic | 40.0% | |
! | TTGTGATCAAATGGGTTTGG+AGG | - | chr4_3:44354725-44354744 | None:intergenic | 40.0% |
!! | GTTTTGATGGAGAAGCTAAG+GGG | + | chr4_3:44354801-44354820 | Msa0642600:CDS | 40.0% |
! | TTTTGATGGAGAAGCTAAGG+GGG | + | chr4_3:44354802-44354821 | Msa0642600:CDS | 40.0% |
!! | ATGCTTGTTGTTGTTGTTGC+TGG | - | chr4_3:44354866-44354885 | None:intergenic | 40.0% |
ATCACCACTTGTAGTTGTTG+TGG | - | chr4_3:44354891-44354910 | None:intergenic | 40.0% | |
AGCCAAGAAACTTAAAGCAG+AGG | + | chr4_3:44355507-44355526 | Msa0642600:CDS | 40.0% | |
AAACTTAAAGCAGAGGTTGC+AGG | + | chr4_3:44355514-44355533 | Msa0642600:CDS | 40.0% | |
GTAGTGTCCAAAACTCATCA+AGG | + | chr4_3:44355553-44355572 | Msa0642600:CDS | 40.0% | |
!! | AATTTGGCCACTGTTTCTGA+TGG | + | chr4_3:44355880-44355899 | Msa0642600:CDS | 40.0% |
! | GTTTTGTAGAGACGGAAAAG+TGG | - | chr4_3:44356013-44356032 | None:intergenic | 40.0% |
!! | CCCATAGCTTTAAATTTGGC+AGG | - | chr4_3:44356238-44356257 | None:intergenic | 40.0% |
! | CATCAATTTGATTCGTGGTG+AGG | + | chr4_3:44354616-44354635 | Msa0642600:CDS | 40.0% |
ATGGGTTTGGAGGAAATGAA+AGG | - | chr4_3:44354715-44354734 | None:intergenic | 40.0% | |
! | TTGTGATCAAATGGGTTTGG+AGG | - | chr4_3:44354725-44354744 | None:intergenic | 40.0% |
!! | GTTTTGATGGAGAAGCTAAG+GGG | + | chr4_3:44354801-44354820 | Msa0642600:CDS | 40.0% |
! | TTTTGATGGAGAAGCTAAGG+GGG | + | chr4_3:44354802-44354821 | Msa0642600:CDS | 40.0% |
!! | ATGCTTGTTGTTGTTGTTGC+TGG | - | chr4_3:44354866-44354885 | None:intergenic | 40.0% |
ATCACCACTTGTAGTTGTTG+TGG | - | chr4_3:44354891-44354910 | None:intergenic | 40.0% | |
AGCCAAGAAACTTAAAGCAG+AGG | + | chr4_3:44355507-44355526 | Msa0642600:CDS | 40.0% | |
AAACTTAAAGCAGAGGTTGC+AGG | + | chr4_3:44355514-44355533 | Msa0642600:CDS | 40.0% | |
GTAGTGTCCAAAACTCATCA+AGG | + | chr4_3:44355553-44355572 | Msa0642600:CDS | 40.0% | |
!! | AATTTGGCCACTGTTTCTGA+TGG | + | chr4_3:44355880-44355899 | Msa0642600:CDS | 40.0% |
! | GTTTTGTAGAGACGGAAAAG+TGG | - | chr4_3:44356013-44356032 | None:intergenic | 40.0% |
!! | CCCATAGCTTTAAATTTGGC+AGG | - | chr4_3:44356238-44356257 | None:intergenic | 40.0% |
! | TGTTGTTGTTGTTGCTGGAG+AGG | - | chr4_3:44354861-44354880 | None:intergenic | 45.0% |
CCTCTCAGAAACCAAAGTCT+TGG | - | chr4_3:44354942-44354961 | None:intergenic | 45.0% | |
! | CCAAGACTTTGGTTTCTGAG+AGG | + | chr4_3:44354939-44354958 | Msa0642600:CDS | 45.0% |
! | AGACTTTGGTTTCTGAGAGG+AGG | + | chr4_3:44354942-44354961 | Msa0642600:CDS | 45.0% |
GCTTTACGCATTGCGTTCTT+TGG | + | chr4_3:44354988-44355007 | Msa0642600:CDS | 45.0% | |
ATGCAATAAGGGAGAAAGGG+TGG | + | chr4_3:44355801-44355820 | Msa0642600:CDS | 45.0% | |
! | TGTTGTTGTTGTTGCTGGAG+AGG | - | chr4_3:44354861-44354880 | None:intergenic | 45.0% |
CCTCTCAGAAACCAAAGTCT+TGG | - | chr4_3:44354942-44354961 | None:intergenic | 45.0% | |
! | CCAAGACTTTGGTTTCTGAG+AGG | + | chr4_3:44354939-44354958 | Msa0642600:CDS | 45.0% |
! | AGACTTTGGTTTCTGAGAGG+AGG | + | chr4_3:44354942-44354961 | Msa0642600:CDS | 45.0% |
GCTTTACGCATTGCGTTCTT+TGG | + | chr4_3:44354988-44355007 | Msa0642600:CDS | 45.0% | |
ATGCAATAAGGGAGAAAGGG+TGG | + | chr4_3:44355801-44355820 | Msa0642600:CDS | 45.0% | |
! | CTTTGGTTTCTGAGAGGAGG+AGG | + | chr4_3:44354945-44354964 | Msa0642600:CDS | 50.0% |
! | CTTTGGTTTCTGAGAGGAGG+AGG | + | chr4_3:44354945-44354964 | Msa0642600:CDS | 50.0% |
GAGGAGGCGAAGCCGAATGA+AGG | + | chr4_3:44354961-44354980 | Msa0642600:CDS | 60.0% | |
GAGGAGGCGAAGCCGAATGA+AGG | + | chr4_3:44354961-44354980 | Msa0642600:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 44354530 | 44356313 | 44354530 | ID=Msa0642600;Name=Msa0642600 |
chr4_3 | mRNA | 44354530 | 44356313 | 44354530 | ID=Msa0642600-mRNA-1;Parent=Msa0642600;Name=Msa0642600-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|4|0|324 |
chr4_3 | exon | 44354530 | 44355027 | 44354530 | ID=Msa0642600-mRNA-1:exon:10155;Parent=Msa0642600-mRNA-1 |
chr4_3 | exon | 44355448 | 44355645 | 44355448 | ID=Msa0642600-mRNA-1:exon:10156;Parent=Msa0642600-mRNA-1 |
chr4_3 | exon | 44355754 | 44355927 | 44355754 | ID=Msa0642600-mRNA-1:exon:10157;Parent=Msa0642600-mRNA-1 |
chr4_3 | exon | 44356209 | 44356313 | 44356209 | ID=Msa0642600-mRNA-1:exon:10158;Parent=Msa0642600-mRNA-1 |
chr4_3 | CDS | 44354530 | 44355027 | 44354530 | ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1 |
chr4_3 | CDS | 44355448 | 44355645 | 44355448 | ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1 |
chr4_3 | CDS | 44355754 | 44355927 | 44355754 | ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1 |
chr4_3 | CDS | 44356209 | 44356313 | 44356209 | ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1 |
Gene Sequence |
Protein sequence |