AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642600 MtrunA17_Chr4g0028071 97.231 325 8 1 1 324 11 335 0.0 645
Msa0642600 MtrunA17_Chr2g0320291 64.263 319 91 9 13 322 9 313 3.00e-131 376
Msa0642600 MtrunA17_Chr8g0365711 30.412 194 108 5 129 308 235 415 3.50e-20 90.5
Msa0642600 MtrunA17_Chr1g0211081 32.432 148 73 3 129 249 308 455 1.28e-17 83.6
Msa0642600 MtrunA17_Chr2g0298751 32.099 162 97 4 137 286 51 211 6.56e-17 79.0
Msa0642600 MtrunA17_Chr8g0366751 30.460 174 107 5 131 291 452 624 2.56e-16 79.7
Msa0642600 MtrunA17_Chr3g0131691 39.796 98 53 1 102 199 268 359 2.63e-15 76.3
Msa0642600 MtrunA17_Chr4g0048851 32.278 158 90 5 137 289 46 191 3.76e-15 73.2
Msa0642600 MtrunA17_Chr5g0411341 30.667 150 93 3 142 281 497 645 1.53e-14 74.3
Msa0642600 MtrunA17_Chr4g0054571 30.827 133 86 2 140 266 152 284 1.19e-13 70.9
Msa0642600 MtrunA17_Chr7g0252041 53.448 58 27 0 137 194 285 342 1.79e-13 70.9
Msa0642600 MtrunA17_Chr8g0346161 28.571 203 105 7 103 281 247 433 2.50e-13 70.5
Msa0642600 MtrunA17_Chr7g0275821 51.923 52 25 0 142 193 256 307 4.30e-13 69.7
Msa0642600 MtrunA17_Chr2g0280161 27.465 142 99 3 127 266 166 305 3.28e-12 66.6
Msa0642600 MtrunA17_Chr7g0225901 26.201 229 122 10 69 276 23 225 4.90e-12 65.1
Msa0642600 MtrunA17_Chr8g0346151 36.458 96 52 2 105 191 237 332 2.31e-11 64.3
Msa0642600 MtrunA17_Chr7g0260841 43.939 66 34 1 131 193 345 410 3.23e-11 63.9
Msa0642600 MtrunA17_Chr4g0054561 34.444 90 47 2 140 227 157 236 5.99e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642600 AT2G28160.1 53.067 326 128 11 7 322 7 317 1.35e-97 291
Msa0642600 AT2G28160.2 52.188 320 128 11 7 316 7 311 4.70e-93 279
Msa0642600 AT5G57150.5 39.490 157 85 4 137 285 53 207 2.05e-23 96.7
Msa0642600 AT5G57150.2 39.490 157 85 4 137 285 54 208 2.17e-23 96.7
Msa0642600 AT5G57150.3 39.490 157 85 4 137 285 54 208 2.26e-23 96.3
Msa0642600 AT5G57150.1 39.490 157 85 4 137 285 53 207 3.36e-23 96.7
Msa0642600 AT5G57150.4 39.490 157 85 4 137 285 54 208 8.14e-23 95.9
Msa0642600 AT2G16910.1 36.416 173 84 5 136 283 312 483 4.81e-22 97.1
Msa0642600 AT4G29930.6 33.544 158 96 3 137 293 53 202 1.72e-21 91.7
Msa0642600 AT4G29930.5 34.194 155 92 3 137 291 53 197 5.23e-21 90.5
Msa0642600 AT4G29930.2 33.121 157 95 3 137 293 53 199 1.55e-20 89.0
Msa0642600 AT4G29930.3 33.516 182 86 5 137 291 53 226 9.07e-20 87.4
Msa0642600 AT4G29930.7 33.516 182 86 5 137 291 53 226 9.07e-20 87.4
Msa0642600 AT4G29930.1 34.320 169 76 5 137 278 53 213 2.49e-19 86.3
Msa0642600 AT4G29930.4 41.284 109 46 3 137 234 53 154 1.75e-17 79.3
Msa0642600 AT1G01260.1 30.093 216 103 6 80 287 383 558 1.80e-15 77.4
Msa0642600 AT1G01260.2 30.093 216 103 6 80 287 383 558 1.80e-15 77.4
Msa0642600 AT1G01260.3 30.093 216 103 6 80 287 383 558 1.80e-15 77.4
Msa0642600 AT1G10610.3 34.167 120 76 2 132 248 161 280 3.58e-15 75.9
Msa0642600 AT4G17880.1 30.714 140 95 2 142 281 420 557 4.28e-15 76.3
Msa0642600 AT1G10610.2 34.167 120 76 2 132 248 228 347 5.47e-15 75.5
Msa0642600 AT1G10610.1 34.167 120 76 2 132 248 258 377 6.44e-15 75.5
Msa0642600 AT2G46510.1 48.101 79 38 1 131 206 385 463 9.45e-15 75.5
Msa0642600 AT5G46760.1 29.167 144 96 4 142 281 419 560 1.83e-14 74.3
Msa0642600 AT1G12860.2 51.724 58 28 0 137 194 266 323 1.56e-13 71.2
Msa0642600 AT1G12860.1 51.724 58 28 0 137 194 266 323 1.70e-13 71.2
Msa0642600 AT3G26744.1 40.000 95 52 1 100 194 274 363 2.64e-13 70.9
Msa0642600 AT3G26744.4 40.000 95 52 1 100 194 274 363 2.64e-13 70.9
Msa0642600 AT3G26744.2 40.000 95 52 1 100 194 274 363 2.64e-13 70.9
Msa0642600 AT3G26744.6 40.000 95 52 1 100 194 274 363 2.73e-13 70.9
Msa0642600 AT1G32640.1 30.573 157 99 5 131 281 442 594 3.35e-13 70.9
Msa0642600 AT4G21330.1 26.178 191 132 5 106 293 4 188 6.56e-13 67.4
Msa0642600 AT5G46830.1 28.662 157 94 4 142 292 347 491 2.28e-11 65.1
Msa0642600 AT2G22760.2 26.943 193 112 7 110 284 85 266 9.39e-11 62.0

Find 55 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTCTGCTTTAAGTTTCT+TGG 0.143972 4_3:-44355509 None:intergenic
CAATGTTCAGAATTCAAATT+TGG 0.160318 4_3:+44355864 Msa0642600:CDS
AAATTTGGCAGGTTGATTTC+TGG 0.184628 4_3:-44356224 None:intergenic
CAAAACTTTGATTCATTATA+AGG 0.232350 4_3:-44354676 None:intergenic
ATCACCCATAGCTTTAAATT+TGG 0.237169 4_3:-44356239 None:intergenic
AATTGATCCTTGATGAGTTT+TGG 0.240491 4_3:-44355560 None:intergenic
TGTTAAAATAGTATGCAATA+AGG 0.282684 4_3:+44355789 Msa0642600:CDS
GAAGTGTACCTTAGTTATAT+TGG 0.288057 4_3:-44355014 None:intergenic
GCTTTACGCATTGCGTTCTT+TGG 0.305835 4_3:+44354988 Msa0642600:CDS
TTGATGAATTGATCAAAGTT+TGG 0.317687 4_3:-44354599 None:intergenic
AAGTGTACCTTAGTTATATT+GGG 0.358633 4_3:-44355013 None:intergenic
TTATCTATGTTGTGATCAAA+TGG 0.384556 4_3:-44354731 None:intergenic
ACCTGCCAAATTTAAAGCTA+TGG 0.396521 4_3:+44356234 Msa0642600:CDS
CAATTCATCAATTTGATTCG+TGG 0.404944 4_3:+44354611 Msa0642600:CDS
CGTAAAGCTTATCCTTCATT+CGG 0.412112 4_3:-44354973 None:intergenic
AAACTTAAAGCAGAGGTTGC+AGG 0.414303 4_3:+44355514 Msa0642600:CDS
ATTATATGTATAGATGGATA+AGG 0.414631 4_3:+44355435 Msa0642600:intron
GTTAAAATAGTATGCAATAA+GGG 0.416472 4_3:+44355790 Msa0642600:CDS
ATGGATAAGGCTTCTATCAT+TGG 0.423797 4_3:+44355448 Msa0642600:CDS
CCCATAGCTTTAAATTTGGC+AGG 0.425488 4_3:-44356235 None:intergenic
TTTGGTTCCCAATATAACTA+AGG 0.432332 4_3:+44355006 Msa0642600:CDS
TTTGATCCTACTTCTTCACT+TGG 0.449750 4_3:+44354767 Msa0642600:CDS
AAGGTATGAATTCAAAGCCT+TGG 0.451801 4_3:-44356277 None:intergenic
TGAAAATAGGTGAAAGACTC+TGG 0.451976 4_3:+44356200 Msa0642600:intron
TTAATGTTTGCTAGTGTCAC+TGG 0.460746 4_3:-44354542 None:intergenic
TAGTATGCAATAAGGGAGAA+AGG 0.463194 4_3:+44355797 Msa0642600:CDS
AATATGCAAGAAAATTGTCC+AGG 0.466755 4_3:+44355624 Msa0642600:CDS
CTTTGGTTTCTGAGAGGAGG+AGG 0.467532 4_3:+44354945 Msa0642600:CDS
AAATGATAGATCCAAGACTT+TGG 0.473297 4_3:+44354928 Msa0642600:CDS
ATGTTGTGATCAAATGGGTT+TGG 0.479555 4_3:-44354725 None:intergenic
AATTTGGCCACTGTTTCTGA+TGG 0.483700 4_3:+44355880 Msa0642600:CDS
TATCTATGTTGTGATCAAAT+GGG 0.486497 4_3:-44354730 None:intergenic
CCTCTCAGAAACCAAAGTCT+TGG 0.490550 4_3:-44354939 None:intergenic
CATCAATTTGATTCGTGGTG+AGG 0.496224 4_3:+44354616 Msa0642600:CDS
ATGTGTCAAGCGTGAAAAGA+AGG 0.518768 4_3:-44356296 None:intergenic
ATGTTTCAAGTGGATGAAAG+AGG 0.519776 4_3:+44355760 Msa0642600:CDS
AGTATGCAATAAGGGAGAAA+GGG 0.525003 4_3:+44355798 Msa0642600:CDS
CCTGCCAAATTTAAAGCTAT+GGG 0.525800 4_3:+44356235 Msa0642600:CDS
AAAGAACCAAGTGAAGAAGT+AGG 0.527298 4_3:-44354773 None:intergenic
TGTTGTTGTTGTTGCTGGAG+AGG 0.528446 4_3:-44354858 None:intergenic
GAGGAGGCGAAGCCGAATGA+AGG 0.530731 4_3:+44354961 Msa0642600:CDS
TGTTTCAAGTGGATGAAAGA+GGG 0.533128 4_3:+44355761 Msa0642600:CDS
ATCACCACTTGTAGTTGTTG+TGG 0.544215 4_3:-44354888 None:intergenic
TTGTGATCAAATGGGTTTGG+AGG 0.546978 4_3:-44354722 None:intergenic
AGACTTTGGTTTCTGAGAGG+AGG 0.567716 4_3:+44354942 Msa0642600:CDS
GTAGATTGATATGTTTCAAG+TGG 0.578490 4_3:+44355750 Msa0642600:intron
ATTCAATTCACTAACAACAA+TGG 0.601953 4_3:+44355598 Msa0642600:CDS
CCAAGACTTTGGTTTCTGAG+AGG 0.603254 4_3:+44354939 Msa0642600:CDS
GAATTAAGAGTAGAAAATGA+TGG 0.612562 4_3:+44354824 Msa0642600:CDS
GTAGTGTCCAAAACTCATCA+AGG 0.616981 4_3:+44355553 Msa0642600:CDS
ATTACCACAACAACTACAAG+TGG 0.626061 4_3:+44354884 Msa0642600:CDS
ATGGGTTTGGAGGAAATGAA+AGG 0.630120 4_3:-44354712 None:intergenic
TAGAAAACCATCAGAAACAG+TGG 0.631132 4_3:-44355887 None:intergenic
AGCCAAGAAACTTAAAGCAG+AGG 0.631149 4_3:+44355507 Msa0642600:CDS
ATGCAATAAGGGAGAAAGGG+TGG 0.649433 4_3:+44355801 Msa0642600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAATTATATGTATAGA+TGG + chr4_3:44355429-44355448 Msa0642600:intron 10.0%
!! TATTTAATTATATGTATAGA+TGG + chr4_3:44355429-44355448 Msa0642600:intron 10.0%
!!! TTAGTGAATTGAATTTTTTT+GGG - chr4_3:44355592-44355611 None:intergenic 15.0%
!! TATATTTAACCTTAAATAGA+GGG - chr4_3:44355943-44355962 None:intergenic 15.0%
!! ATATATTTAACCTTAAATAG+AGG - chr4_3:44355944-44355963 None:intergenic 15.0%
!!! AAACAAAATTACATGATTTT+AGG + chr4_3:44356029-44356048 Msa0642600:intron 15.0%
!!! TTTTTATTACCATAACATTT+AGG - chr4_3:44356116-44356135 None:intergenic 15.0%
!!! TTAGTGAATTGAATTTTTTT+GGG - chr4_3:44355592-44355611 None:intergenic 15.0%
!! TATATTTAACCTTAAATAGA+GGG - chr4_3:44355943-44355962 None:intergenic 15.0%
!! ATATATTTAACCTTAAATAG+AGG - chr4_3:44355944-44355963 None:intergenic 15.0%
!!! AAACAAAATTACATGATTTT+AGG + chr4_3:44356029-44356048 Msa0642600:intron 15.0%
!!! TTTTTATTACCATAACATTT+AGG - chr4_3:44356116-44356135 None:intergenic 15.0%
!! CAAAACTTTGATTCATTATA+AGG - chr4_3:44354679-44354698 None:intergenic 20.0%
!!! AGCAATTTTCATCTTATAAA+TGG - chr4_3:44355230-44355249 None:intergenic 20.0%
!! TTATAAGATGAAAATTGCTT+CGG + chr4_3:44355231-44355250 Msa0642600:intron 20.0%
!!! TATTTTGGATAGTAACATAT+AGG - chr4_3:44355276-44355295 None:intergenic 20.0%
!!! ACAATGAATCTTAACTATTT+TGG - chr4_3:44355291-44355310 None:intergenic 20.0%
!! ATTATATGTATAGATGGATA+AGG + chr4_3:44355435-44355454 Msa0642600:intron 20.0%
!!! TAGTGAATTGAATTTTTTTG+GGG - chr4_3:44355591-44355610 None:intergenic 20.0%
!!! GTTAGTGAATTGAATTTTTT+TGG - chr4_3:44355593-44355612 None:intergenic 20.0%
!!! ATTGTAATTTGTAACATCTT+TGG + chr4_3:44355715-44355734 Msa0642600:intron 20.0%
!! TGTTAAAATAGTATGCAATA+AGG + chr4_3:44355789-44355808 Msa0642600:CDS 20.0%
!! GTTAAAATAGTATGCAATAA+GGG + chr4_3:44355790-44355809 Msa0642600:CDS 20.0%
!! CTAAAAAAACCTAAATGTTA+TGG + chr4_3:44356104-44356123 Msa0642600:intron 20.0%
!! CAAAACTTTGATTCATTATA+AGG - chr4_3:44354679-44354698 None:intergenic 20.0%
!!! AGCAATTTTCATCTTATAAA+TGG - chr4_3:44355230-44355249 None:intergenic 20.0%
!! TTATAAGATGAAAATTGCTT+CGG + chr4_3:44355231-44355250 Msa0642600:intron 20.0%
!!! TATTTTGGATAGTAACATAT+AGG - chr4_3:44355276-44355295 None:intergenic 20.0%
!!! ACAATGAATCTTAACTATTT+TGG - chr4_3:44355291-44355310 None:intergenic 20.0%
!! ATTATATGTATAGATGGATA+AGG + chr4_3:44355435-44355454 Msa0642600:intron 20.0%
!!! TAGTGAATTGAATTTTTTTG+GGG - chr4_3:44355591-44355610 None:intergenic 20.0%
!!! GTTAGTGAATTGAATTTTTT+TGG - chr4_3:44355593-44355612 None:intergenic 20.0%
!!! ATTGTAATTTGTAACATCTT+TGG + chr4_3:44355715-44355734 Msa0642600:intron 20.0%
!! TGTTAAAATAGTATGCAATA+AGG + chr4_3:44355789-44355808 Msa0642600:CDS 20.0%
!! GTTAAAATAGTATGCAATAA+GGG + chr4_3:44355790-44355809 Msa0642600:CDS 20.0%
!! CTAAAAAAACCTAAATGTTA+TGG + chr4_3:44356104-44356123 Msa0642600:intron 20.0%
! TTGATGAATTGATCAAAGTT+TGG - chr4_3:44354602-44354621 None:intergenic 25.0%
! TATCTATGTTGTGATCAAAT+GGG - chr4_3:44354733-44354752 None:intergenic 25.0%
! TTATCTATGTTGTGATCAAA+TGG - chr4_3:44354734-44354753 None:intergenic 25.0%
! GAATTAAGAGTAGAAAATGA+TGG + chr4_3:44354824-44354843 Msa0642600:CDS 25.0%
! AAGTGTACCTTAGTTATATT+GGG - chr4_3:44355016-44355035 None:intergenic 25.0%
!!! ATGGTTTTAAATTGTTGTTG+CGG + chr4_3:44355037-44355056 Msa0642600:intron 25.0%
!! TTTATCATAATTTGAAGCAG+CGG - chr4_3:44355161-44355180 None:intergenic 25.0%
! ATGCTTGTATGAAATTTACA+AGG - chr4_3:44355326-44355345 None:intergenic 25.0%
! ATTCAATTCACTAACAACAA+TGG + chr4_3:44355598-44355617 Msa0642600:CDS 25.0%
! AGATATTTATCAAACAAACC+TGG - chr4_3:44355645-44355664 None:intergenic 25.0%
! CAATGTTCAGAATTCAAATT+TGG + chr4_3:44355864-44355883 Msa0642600:CDS 25.0%
!!! GTAATTTTGTTTTGTAGAGA+CGG - chr4_3:44356021-44356040 None:intergenic 25.0%
! CAGCTAATGAAATAGAATAA+TGG - chr4_3:44356149-44356168 None:intergenic 25.0%
! CATGCTTATTATGTGAAAAT+AGG + chr4_3:44356187-44356206 Msa0642600:intron 25.0%
! TTGATGAATTGATCAAAGTT+TGG - chr4_3:44354602-44354621 None:intergenic 25.0%
! TATCTATGTTGTGATCAAAT+GGG - chr4_3:44354733-44354752 None:intergenic 25.0%
! TTATCTATGTTGTGATCAAA+TGG - chr4_3:44354734-44354753 None:intergenic 25.0%
! GAATTAAGAGTAGAAAATGA+TGG + chr4_3:44354824-44354843 Msa0642600:CDS 25.0%
! AAGTGTACCTTAGTTATATT+GGG - chr4_3:44355016-44355035 None:intergenic 25.0%
!!! ATGGTTTTAAATTGTTGTTG+CGG + chr4_3:44355037-44355056 Msa0642600:intron 25.0%
!! TTTATCATAATTTGAAGCAG+CGG - chr4_3:44355161-44355180 None:intergenic 25.0%
! ATGCTTGTATGAAATTTACA+AGG - chr4_3:44355326-44355345 None:intergenic 25.0%
! ATTCAATTCACTAACAACAA+TGG + chr4_3:44355598-44355617 Msa0642600:CDS 25.0%
! AGATATTTATCAAACAAACC+TGG - chr4_3:44355645-44355664 None:intergenic 25.0%
! CAATGTTCAGAATTCAAATT+TGG + chr4_3:44355864-44355883 Msa0642600:CDS 25.0%
!!! GTAATTTTGTTTTGTAGAGA+CGG - chr4_3:44356021-44356040 None:intergenic 25.0%
! CAGCTAATGAAATAGAATAA+TGG - chr4_3:44356149-44356168 None:intergenic 25.0%
! CATGCTTATTATGTGAAAAT+AGG + chr4_3:44356187-44356206 Msa0642600:intron 25.0%
! CAATTCATCAATTTGATTCG+TGG + chr4_3:44354611-44354630 Msa0642600:CDS 30.0%
!! GATCTATCATTTTTCGACTT+TGG - chr4_3:44354920-44354939 None:intergenic 30.0%
AAATGATAGATCCAAGACTT+TGG + chr4_3:44354928-44354947 Msa0642600:CDS 30.0%
! TTTGGTTCCCAATATAACTA+AGG + chr4_3:44355006-44355025 Msa0642600:CDS 30.0%
GAAGTGTACCTTAGTTATAT+TGG - chr4_3:44355017-44355036 None:intergenic 30.0%
TATAACTAAGGTACACTTCA+TGG + chr4_3:44355018-44355037 Msa0642600:intron 30.0%
TTTGGCACAATATAAAGGTT+TGG - chr4_3:44355070-44355089 None:intergenic 30.0%
!! GACATTTTGGCACAATATAA+AGG - chr4_3:44355075-44355094 None:intergenic 30.0%
!! GAGAAATTTTGACGACATTT+TGG - chr4_3:44355088-44355107 None:intergenic 30.0%
ATTTCTCTTGTGAAACCATT+AGG + chr4_3:44355101-44355120 Msa0642600:intron 30.0%
TTTCTCTTGTGAAACCATTA+GGG + chr4_3:44355102-44355121 Msa0642600:intron 30.0%
! AATTGATCCTTGATGAGTTT+TGG - chr4_3:44355563-44355582 None:intergenic 30.0%
AATATGCAAGAAAATTGTCC+AGG + chr4_3:44355624-44355643 Msa0642600:CDS 30.0%
ATTTGTAACATCTTTGGATG+TGG + chr4_3:44355721-44355740 Msa0642600:intron 30.0%
GTAGATTGATATGTTTCAAG+TGG + chr4_3:44355750-44355769 Msa0642600:intron 30.0%
AGCTATATTCCCTCTATTTA+AGG + chr4_3:44355931-44355950 Msa0642600:intron 30.0%
AATTCGTAGAGACTAAAAAG+TGG + chr4_3:44356073-44356092 Msa0642600:intron 30.0%
!! ATCACCCATAGCTTTAAATT+TGG - chr4_3:44356242-44356261 None:intergenic 30.0%
! CAATTCATCAATTTGATTCG+TGG + chr4_3:44354611-44354630 Msa0642600:CDS 30.0%
!! GATCTATCATTTTTCGACTT+TGG - chr4_3:44354920-44354939 None:intergenic 30.0%
AAATGATAGATCCAAGACTT+TGG + chr4_3:44354928-44354947 Msa0642600:CDS 30.0%
! TTTGGTTCCCAATATAACTA+AGG + chr4_3:44355006-44355025 Msa0642600:CDS 30.0%
GAAGTGTACCTTAGTTATAT+TGG - chr4_3:44355017-44355036 None:intergenic 30.0%
TATAACTAAGGTACACTTCA+TGG + chr4_3:44355018-44355037 Msa0642600:intron 30.0%
TTTGGCACAATATAAAGGTT+TGG - chr4_3:44355070-44355089 None:intergenic 30.0%
!! GACATTTTGGCACAATATAA+AGG - chr4_3:44355075-44355094 None:intergenic 30.0%
!! GAGAAATTTTGACGACATTT+TGG - chr4_3:44355088-44355107 None:intergenic 30.0%
ATTTCTCTTGTGAAACCATT+AGG + chr4_3:44355101-44355120 Msa0642600:intron 30.0%
TTTCTCTTGTGAAACCATTA+GGG + chr4_3:44355102-44355121 Msa0642600:intron 30.0%
! AATTGATCCTTGATGAGTTT+TGG - chr4_3:44355563-44355582 None:intergenic 30.0%
AATATGCAAGAAAATTGTCC+AGG + chr4_3:44355624-44355643 Msa0642600:CDS 30.0%
ATTTGTAACATCTTTGGATG+TGG + chr4_3:44355721-44355740 Msa0642600:intron 30.0%
GTAGATTGATATGTTTCAAG+TGG + chr4_3:44355750-44355769 Msa0642600:intron 30.0%
AGCTATATTCCCTCTATTTA+AGG + chr4_3:44355931-44355950 Msa0642600:intron 30.0%
AATTCGTAGAGACTAAAAAG+TGG + chr4_3:44356073-44356092 Msa0642600:intron 30.0%
!! ATCACCCATAGCTTTAAATT+TGG - chr4_3:44356242-44356261 None:intergenic 30.0%
! TTAATGTTTGCTAGTGTCAC+TGG - chr4_3:44354545-44354564 None:intergenic 35.0%
! ATGTTGTGATCAAATGGGTT+TGG - chr4_3:44354728-44354747 None:intergenic 35.0%
TTTGATCCTACTTCTTCACT+TGG + chr4_3:44354767-44354786 Msa0642600:CDS 35.0%
AAAGAACCAAGTGAAGAAGT+AGG - chr4_3:44354776-44354795 None:intergenic 35.0%
!!! GGTTCTTTCTCTTGTTTTGA+TGG + chr4_3:44354788-44354807 Msa0642600:CDS 35.0%
!!! TTGTTTTGATGGAGAAGCTA+AGG + chr4_3:44354799-44354818 Msa0642600:CDS 35.0%
!!! TGTTTTGATGGAGAAGCTAA+GGG + chr4_3:44354800-44354819 Msa0642600:CDS 35.0%
ATTACCACAACAACTACAAG+TGG + chr4_3:44354884-44354903 Msa0642600:CDS 35.0%
CGTAAAGCTTATCCTTCATT+CGG - chr4_3:44354976-44354995 None:intergenic 35.0%
!!! AGATTTTGAAGTCTCCCTAA+TGG - chr4_3:44355119-44355138 None:intergenic 35.0%
GTAACATATAGGCTGAATAG+TGG - chr4_3:44355265-44355284 None:intergenic 35.0%
ATGGATAAGGCTTCTATCAT+TGG + chr4_3:44355448-44355467 Msa0642600:CDS 35.0%
! AACCTCTGCTTTAAGTTTCT+TGG - chr4_3:44355512-44355531 None:intergenic 35.0%
! ATGTTTCAAGTGGATGAAAG+AGG + chr4_3:44355760-44355779 Msa0642600:CDS 35.0%
! TGTTTCAAGTGGATGAAAGA+GGG + chr4_3:44355761-44355780 Msa0642600:CDS 35.0%
TAGTATGCAATAAGGGAGAA+AGG + chr4_3:44355797-44355816 Msa0642600:CDS 35.0%
AGTATGCAATAAGGGAGAAA+GGG + chr4_3:44355798-44355817 Msa0642600:CDS 35.0%
TAGAAAACCATCAGAAACAG+TGG - chr4_3:44355890-44355909 None:intergenic 35.0%
TGAAAATAGGTGAAAGACTC+TGG + chr4_3:44356200-44356219 Msa0642600:intron 35.0%
!! AAATTTGGCAGGTTGATTTC+TGG - chr4_3:44356227-44356246 None:intergenic 35.0%
! ACCTGCCAAATTTAAAGCTA+TGG + chr4_3:44356234-44356253 Msa0642600:CDS 35.0%
! CCTGCCAAATTTAAAGCTAT+GGG + chr4_3:44356235-44356254 Msa0642600:CDS 35.0%
! ATCAGTGCTTTTCTAAACCA+AGG + chr4_3:44356260-44356279 Msa0642600:CDS 35.0%
AAGGTATGAATTCAAAGCCT+TGG - chr4_3:44356280-44356299 None:intergenic 35.0%
! TTAATGTTTGCTAGTGTCAC+TGG - chr4_3:44354545-44354564 None:intergenic 35.0%
! ATGTTGTGATCAAATGGGTT+TGG - chr4_3:44354728-44354747 None:intergenic 35.0%
TTTGATCCTACTTCTTCACT+TGG + chr4_3:44354767-44354786 Msa0642600:CDS 35.0%
AAAGAACCAAGTGAAGAAGT+AGG - chr4_3:44354776-44354795 None:intergenic 35.0%
!!! GGTTCTTTCTCTTGTTTTGA+TGG + chr4_3:44354788-44354807 Msa0642600:CDS 35.0%
!!! TTGTTTTGATGGAGAAGCTA+AGG + chr4_3:44354799-44354818 Msa0642600:CDS 35.0%
!!! TGTTTTGATGGAGAAGCTAA+GGG + chr4_3:44354800-44354819 Msa0642600:CDS 35.0%
ATTACCACAACAACTACAAG+TGG + chr4_3:44354884-44354903 Msa0642600:CDS 35.0%
CGTAAAGCTTATCCTTCATT+CGG - chr4_3:44354976-44354995 None:intergenic 35.0%
!!! AGATTTTGAAGTCTCCCTAA+TGG - chr4_3:44355119-44355138 None:intergenic 35.0%
GTAACATATAGGCTGAATAG+TGG - chr4_3:44355265-44355284 None:intergenic 35.0%
ATGGATAAGGCTTCTATCAT+TGG + chr4_3:44355448-44355467 Msa0642600:CDS 35.0%
! AACCTCTGCTTTAAGTTTCT+TGG - chr4_3:44355512-44355531 None:intergenic 35.0%
! ATGTTTCAAGTGGATGAAAG+AGG + chr4_3:44355760-44355779 Msa0642600:CDS 35.0%
! TGTTTCAAGTGGATGAAAGA+GGG + chr4_3:44355761-44355780 Msa0642600:CDS 35.0%
TAGTATGCAATAAGGGAGAA+AGG + chr4_3:44355797-44355816 Msa0642600:CDS 35.0%
AGTATGCAATAAGGGAGAAA+GGG + chr4_3:44355798-44355817 Msa0642600:CDS 35.0%
TAGAAAACCATCAGAAACAG+TGG - chr4_3:44355890-44355909 None:intergenic 35.0%
TGAAAATAGGTGAAAGACTC+TGG + chr4_3:44356200-44356219 Msa0642600:intron 35.0%
!! AAATTTGGCAGGTTGATTTC+TGG - chr4_3:44356227-44356246 None:intergenic 35.0%
! ACCTGCCAAATTTAAAGCTA+TGG + chr4_3:44356234-44356253 Msa0642600:CDS 35.0%
! CCTGCCAAATTTAAAGCTAT+GGG + chr4_3:44356235-44356254 Msa0642600:CDS 35.0%
! ATCAGTGCTTTTCTAAACCA+AGG + chr4_3:44356260-44356279 Msa0642600:CDS 35.0%
AAGGTATGAATTCAAAGCCT+TGG - chr4_3:44356280-44356299 None:intergenic 35.0%
! CATCAATTTGATTCGTGGTG+AGG + chr4_3:44354616-44354635 Msa0642600:CDS 40.0%
ATGGGTTTGGAGGAAATGAA+AGG - chr4_3:44354715-44354734 None:intergenic 40.0%
! TTGTGATCAAATGGGTTTGG+AGG - chr4_3:44354725-44354744 None:intergenic 40.0%
!! GTTTTGATGGAGAAGCTAAG+GGG + chr4_3:44354801-44354820 Msa0642600:CDS 40.0%
! TTTTGATGGAGAAGCTAAGG+GGG + chr4_3:44354802-44354821 Msa0642600:CDS 40.0%
!! ATGCTTGTTGTTGTTGTTGC+TGG - chr4_3:44354866-44354885 None:intergenic 40.0%
ATCACCACTTGTAGTTGTTG+TGG - chr4_3:44354891-44354910 None:intergenic 40.0%
AGCCAAGAAACTTAAAGCAG+AGG + chr4_3:44355507-44355526 Msa0642600:CDS 40.0%
AAACTTAAAGCAGAGGTTGC+AGG + chr4_3:44355514-44355533 Msa0642600:CDS 40.0%
GTAGTGTCCAAAACTCATCA+AGG + chr4_3:44355553-44355572 Msa0642600:CDS 40.0%
!! AATTTGGCCACTGTTTCTGA+TGG + chr4_3:44355880-44355899 Msa0642600:CDS 40.0%
! GTTTTGTAGAGACGGAAAAG+TGG - chr4_3:44356013-44356032 None:intergenic 40.0%
!! CCCATAGCTTTAAATTTGGC+AGG - chr4_3:44356238-44356257 None:intergenic 40.0%
! CATCAATTTGATTCGTGGTG+AGG + chr4_3:44354616-44354635 Msa0642600:CDS 40.0%
ATGGGTTTGGAGGAAATGAA+AGG - chr4_3:44354715-44354734 None:intergenic 40.0%
! TTGTGATCAAATGGGTTTGG+AGG - chr4_3:44354725-44354744 None:intergenic 40.0%
!! GTTTTGATGGAGAAGCTAAG+GGG + chr4_3:44354801-44354820 Msa0642600:CDS 40.0%
! TTTTGATGGAGAAGCTAAGG+GGG + chr4_3:44354802-44354821 Msa0642600:CDS 40.0%
!! ATGCTTGTTGTTGTTGTTGC+TGG - chr4_3:44354866-44354885 None:intergenic 40.0%
ATCACCACTTGTAGTTGTTG+TGG - chr4_3:44354891-44354910 None:intergenic 40.0%
AGCCAAGAAACTTAAAGCAG+AGG + chr4_3:44355507-44355526 Msa0642600:CDS 40.0%
AAACTTAAAGCAGAGGTTGC+AGG + chr4_3:44355514-44355533 Msa0642600:CDS 40.0%
GTAGTGTCCAAAACTCATCA+AGG + chr4_3:44355553-44355572 Msa0642600:CDS 40.0%
!! AATTTGGCCACTGTTTCTGA+TGG + chr4_3:44355880-44355899 Msa0642600:CDS 40.0%
! GTTTTGTAGAGACGGAAAAG+TGG - chr4_3:44356013-44356032 None:intergenic 40.0%
!! CCCATAGCTTTAAATTTGGC+AGG - chr4_3:44356238-44356257 None:intergenic 40.0%
! TGTTGTTGTTGTTGCTGGAG+AGG - chr4_3:44354861-44354880 None:intergenic 45.0%
CCTCTCAGAAACCAAAGTCT+TGG - chr4_3:44354942-44354961 None:intergenic 45.0%
! CCAAGACTTTGGTTTCTGAG+AGG + chr4_3:44354939-44354958 Msa0642600:CDS 45.0%
! AGACTTTGGTTTCTGAGAGG+AGG + chr4_3:44354942-44354961 Msa0642600:CDS 45.0%
GCTTTACGCATTGCGTTCTT+TGG + chr4_3:44354988-44355007 Msa0642600:CDS 45.0%
ATGCAATAAGGGAGAAAGGG+TGG + chr4_3:44355801-44355820 Msa0642600:CDS 45.0%
! TGTTGTTGTTGTTGCTGGAG+AGG - chr4_3:44354861-44354880 None:intergenic 45.0%
CCTCTCAGAAACCAAAGTCT+TGG - chr4_3:44354942-44354961 None:intergenic 45.0%
! CCAAGACTTTGGTTTCTGAG+AGG + chr4_3:44354939-44354958 Msa0642600:CDS 45.0%
! AGACTTTGGTTTCTGAGAGG+AGG + chr4_3:44354942-44354961 Msa0642600:CDS 45.0%
GCTTTACGCATTGCGTTCTT+TGG + chr4_3:44354988-44355007 Msa0642600:CDS 45.0%
ATGCAATAAGGGAGAAAGGG+TGG + chr4_3:44355801-44355820 Msa0642600:CDS 45.0%
! CTTTGGTTTCTGAGAGGAGG+AGG + chr4_3:44354945-44354964 Msa0642600:CDS 50.0%
! CTTTGGTTTCTGAGAGGAGG+AGG + chr4_3:44354945-44354964 Msa0642600:CDS 50.0%
GAGGAGGCGAAGCCGAATGA+AGG + chr4_3:44354961-44354980 Msa0642600:CDS 60.0%
GAGGAGGCGAAGCCGAATGA+AGG + chr4_3:44354961-44354980 Msa0642600:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 44354530 44356313 44354530 ID=Msa0642600;Name=Msa0642600
chr4_3 mRNA 44354530 44356313 44354530 ID=Msa0642600-mRNA-1;Parent=Msa0642600;Name=Msa0642600-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|4|0|324
chr4_3 exon 44354530 44355027 44354530 ID=Msa0642600-mRNA-1:exon:10155;Parent=Msa0642600-mRNA-1
chr4_3 exon 44355448 44355645 44355448 ID=Msa0642600-mRNA-1:exon:10156;Parent=Msa0642600-mRNA-1
chr4_3 exon 44355754 44355927 44355754 ID=Msa0642600-mRNA-1:exon:10157;Parent=Msa0642600-mRNA-1
chr4_3 exon 44356209 44356313 44356209 ID=Msa0642600-mRNA-1:exon:10158;Parent=Msa0642600-mRNA-1
chr4_3 CDS 44354530 44355027 44354530 ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1
chr4_3 CDS 44355448 44355645 44355448 ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1
chr4_3 CDS 44355754 44355927 44355754 ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1
chr4_3 CDS 44356209 44356313 44356209 ID=Msa0642600-mRNA-1:cds;Parent=Msa0642600-mRNA-1
Gene Sequence

>Msa0642600

ATGGATTTTTATCCAGTGACACTAGCAAACATTAACAATGACTATGAGTTACACGATTTCATTGATGATCCAAACTTTGATCAATTCATCAATTTGATTCGTGGTGAGGAGAATGAAGATACTACTATTTGTAACTTCAATTCTGACCTTATAATGAATCAAAGTTTTGTTGATAACTCACTCCTTTCATTTCCTCCAAACCCATTTGATCACAACATAGATAATACTATAACTGCTTTTGATCCTACTTCTTCACTTGGTTCTTTCTCTTGTTTTGATGGAGAAGCTAAGGGGGAATTAAGAGTAGAAAATGATGGTGATAATTACTCCTCTCCAGCAACAACAACAACAAGCATTACCACAACAACTACAAGTGGTGATACTAAGCCAAAGTCGAAAAATGATAGATCCAAGACTTTGGTTTCTGAGAGGAGGAGGCGAAGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTGGTTCCCAATATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCTGTTTCATATATGCATGAGCTTCAATCACAAGCCAAGAAACTTAAAGCAGAGGTTGCAGGACTTGAAGCATCATTAGTAGTGTCCAAAACTCATCAAGGATCAATTGATAACCCCAAAAAAATTCAATTCACTAACAACAATGGTTCAATATGCAAGAAAATTGTCCAGATTGATATGTTTCAAGTGGATGAAAGAGGGTTTTATGTTAAAATAGTATGCAATAAGGGAGAAAGGGTGGCTGCTTCATTGTACAAGTCTCTTGAATCTTTGAAAGATTTCAATGTTCAGAATTCAAATTTGGCCACTGTTTCTGATGGTTTTCTATTTACATTTTCATTGAATGTGAAAGACTCTGGACCAGAAATCAACCTGCCAAATTTAAAGCTATGGGTGATCAGTGCTTTTCTAAACCAAGGCTTTGAATTCATACCTTCTTTTCACGCTTGA

Protein sequence

>Msa0642600

MDFYPVTLANINNDYELHDFIDDPNFDQFINLIRGEENEDTTICNFNSDLIMNQSFVDNSLLSFPPNPFDHNIDNTITAFDPTSSLGSFSCFDGEAKGELRVENDGDNYSSPATTTTSITTTTTSGDTKPKSKNDRSKTLVSERRRRSRMKDKLYALRSLVPNITKMDKASIIGDAVSYMHELQSQAKKLKAEVAGLEASLVVSKTHQGSIDNPKKIQFTNNNGSICKKIVQIDMFQVDERGFYVKIVCNKGERVAASLYKSLESLKDFNVQNSNLATVSDGFLFTFSLNVKDSGPEINLPNLKLWVISAFLNQGFEFIPSFHA*