Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047210 | sp|Q9C889|PR1F2_ARATH | 57.865 | 178 | 75 | 0 | 76 | 253 | 1 | 178 | 1.38e-67 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047210 | Msa0078110 | -0.814609 | 1.411944e-51 | -8.615850e-47 |
| Msa0047210 | Msa0259770 | -0.811558 | 6.594120e-51 | -8.615850e-47 |
| Msa0047210 | Msa0560650 | -0.804860 | 1.763891e-49 | -8.615850e-47 |
| Msa0047210 | Msa0565120 | 0.809129 | 2.203704e-50 | -8.615850e-47 |
| Msa0047210 | Msa0639260 | -0.805522 | 1.281687e-49 | -8.615850e-47 |
| Msa0047210 | Msa0769400 | 0.826881 | 2.126276e-54 | -8.615850e-47 |
| Msa0047210 | Msa0933500 | -0.801126 | 1.043244e-48 | -8.615850e-47 |
| Msa0047210 | Msa0983040 | 0.830607 | 2.670280e-55 | -8.615850e-47 |
| Msa0047210 | Msa1088840 | 0.941962 | 1.664668e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047210 | MtrunA17_Chr2g0330451 | 94.652 | 187 | 8 | 2 | 76 | 262 | 1 | 185 | 5.81e-94 | 274 |
| Msa0047210 | MtrunA17_Chr2g0330441 | 63.830 | 188 | 60 | 4 | 77 | 259 | 3 | 187 | 6.14e-76 | 228 |
| Msa0047210 | MtrunA17_Chr2g0330441 | 88.889 | 54 | 6 | 0 | 1 | 54 | 128 | 181 | 7.58e-25 | 97.8 |
| Msa0047210 | MtrunA17_Chr8g0341921 | 59.880 | 167 | 64 | 1 | 77 | 243 | 3 | 166 | 4.19e-60 | 188 |
| Msa0047210 | MtrunA17_Chr6g0488551 | 45.198 | 177 | 97 | 0 | 76 | 252 | 1 | 177 | 1.73e-53 | 172 |
| Msa0047210 | MtrunA17_Chr7g0260751 | 49.390 | 164 | 78 | 2 | 86 | 249 | 18 | 176 | 7.44e-51 | 165 |
| Msa0047210 | MtrunA17_Chr1g0184741 | 48.913 | 184 | 78 | 2 | 66 | 249 | 2 | 169 | 1.94e-43 | 146 |
| Msa0047210 | MtrunA17_Chr5g0437751 | 38.947 | 190 | 112 | 2 | 64 | 249 | 2 | 191 | 1.11e-34 | 124 |
| Msa0047210 | MtrunA17_Chr4g0005191 | 40.385 | 156 | 91 | 1 | 97 | 250 | 45 | 200 | 6.92e-33 | 119 |
| Msa0047210 | MtrunA17_Chr1g0190601 | 40.571 | 175 | 96 | 2 | 79 | 253 | 10 | 176 | 8.02e-30 | 110 |
| Msa0047210 | MtrunA17_Chr1g0187861 | 38.776 | 98 | 58 | 1 | 95 | 190 | 6 | 103 | 8.19e-18 | 79.0 |
| Msa0047210 | MtrunA17_Chr3g0106401 | 38.298 | 141 | 85 | 1 | 111 | 249 | 28 | 168 | 4.15e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047210 | AT1G55190.1 | 57.865 | 178 | 75 | 0 | 76 | 253 | 1 | 178 | 1.41e-68 | 210 |
| Msa0047210 | AT3G13720.1 | 54.335 | 173 | 79 | 0 | 76 | 248 | 1 | 173 | 4.67e-60 | 188 |
| Msa0047210 | AT3G13710.1 | 50.000 | 186 | 88 | 1 | 76 | 256 | 1 | 186 | 1.09e-58 | 185 |
| Msa0047210 | AT1G17700.1 | 50.000 | 178 | 87 | 2 | 76 | 252 | 1 | 177 | 6.16e-48 | 157 |
| Msa0047210 | AT1G04260.1 | 41.667 | 156 | 91 | 0 | 95 | 250 | 4 | 159 | 8.53e-38 | 131 |
| Msa0047210 | AT4G29658.2 | 42.045 | 176 | 99 | 2 | 76 | 250 | 1 | 174 | 9.64e-37 | 129 |
| Msa0047210 | AT1G08770.1 | 42.763 | 152 | 85 | 1 | 99 | 248 | 35 | 186 | 2.39e-36 | 128 |
| Msa0047210 | AT2G38360.1 | 34.715 | 193 | 116 | 3 | 67 | 249 | 2 | 194 | 2.84e-35 | 126 |
| Msa0047210 | AT5G01640.1 | 35.829 | 187 | 115 | 3 | 71 | 253 | 13 | 198 | 7.58e-34 | 122 |
| Msa0047210 | AT3G56110.3 | 36.413 | 184 | 109 | 3 | 73 | 251 | 6 | 186 | 8.50e-31 | 114 |
| Msa0047210 | AT3G56110.1 | 36.413 | 184 | 109 | 3 | 73 | 251 | 6 | 186 | 8.50e-31 | 114 |
| Msa0047210 | AT3G56110.2 | 36.413 | 184 | 109 | 3 | 73 | 251 | 6 | 186 | 8.50e-31 | 114 |
| Msa0047210 | AT3G56110.4 | 36.413 | 184 | 109 | 3 | 73 | 251 | 6 | 186 | 8.50e-31 | 114 |
| Msa0047210 | AT5G05380.3 | 33.898 | 236 | 134 | 4 | 36 | 249 | 3 | 238 | 1.65e-29 | 112 |
| Msa0047210 | AT5G05380.2 | 33.898 | 236 | 134 | 4 | 36 | 249 | 19 | 254 | 2.10e-29 | 112 |
| Msa0047210 | AT5G05380.4 | 35.426 | 223 | 122 | 4 | 49 | 249 | 8 | 230 | 3.08e-29 | 111 |
| Msa0047210 | AT2G40380.1 | 36.757 | 185 | 96 | 3 | 86 | 249 | 2 | 186 | 3.41e-29 | 110 |
| Msa0047210 | AT5G05380.1 | 37.097 | 186 | 105 | 2 | 76 | 249 | 2 | 187 | 4.70e-28 | 107 |
| Msa0047210 | AT5G07110.1 | 41.429 | 140 | 80 | 1 | 112 | 249 | 45 | 184 | 7.15e-28 | 106 |
| Msa0047210 | AT5G56230.1 | 30.357 | 168 | 116 | 1 | 83 | 249 | 7 | 174 | 6.86e-27 | 103 |
| Msa0047210 | AT1G55640.1 | 33.974 | 156 | 102 | 1 | 95 | 249 | 21 | 176 | 9.19e-25 | 97.8 |
| Msa0047210 | AT4G29658.1 | 43.119 | 109 | 61 | 1 | 143 | 250 | 3 | 111 | 3.88e-17 | 75.9 |
Find 59 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGTGTTCATTCTCTTTAC+TGG | 0.210912 | 1_1:-79929513 | Msa0047210:CDS |
| GATGAACCTCTTGTTATCTT+TGG | 0.288928 | 1_1:-79926643 | Msa0047210:CDS |
| GCCGGATTTGAGGCGGTCTT+TGG | 0.291200 | 1_1:+79926894 | None:intergenic |
| GGATGATGGCGTAGTTCATC+TGG | 0.387307 | 1_1:+79926764 | None:intergenic |
| CATCGTCTTCGTCGTTCTCA+TGG | 0.412362 | 1_1:-79926695 | Msa0047210:CDS |
| GCCAAAGACCGCCTCAAATC+CGG | 0.414007 | 1_1:-79926895 | Msa0047210:CDS |
| TCCTCTTCCTCAGTCTTCTC+TGG | 0.414218 | 1_1:-79926732 | Msa0047210:CDS |
| ATGAATTCGAGGTTTGTTGC+AGG | 0.451398 | 1_1:+79926925 | None:intergenic |
| ATTCTTATCGCCGTTGCGGT+TGG | 0.459068 | 1_1:-79926535 | Msa0047210:CDS |
| TTTCTTGATGAAGAAGAAGA+AGG | 0.460660 | 1_1:-79926463 | Msa0047210:CDS |
| GGAAATAGCTTCGTGGAAGT+TGG | 0.470169 | 1_1:+79926813 | None:intergenic |
| ACGAAGACGATGAGTGAGAT+TGG | 0.473115 | 1_1:+79926706 | None:intergenic |
| GACCGCCTCAAATCCGGCCT+CGG | 0.475536 | 1_1:-79926889 | Msa0047210:CDS |
| CGCCGTTGCGGTTGGTGTTG+TGG | 0.480076 | 1_1:-79926527 | Msa0047210:CDS |
| CATCTGGAAGAAAGAGATGT+TGG | 0.482307 | 1_1:+79926780 | None:intergenic |
| GATCAAGAAGCAGGAGCACC+AGG | 0.485484 | 1_1:+79926424 | None:intergenic |
| GCCTCGGAACTCGCCGTCCA+TGG | 0.485626 | 1_1:-79926873 | Msa0047210:CDS |
| GGTGGGGATGATGATGAGGT+TGG | 0.487376 | 1_1:+79926946 | None:intergenic |
| GTGGGGATGATGATGAGGTT+GGG | 0.488965 | 1_1:+79926947 | None:intergenic |
| GCCAGAGAAGACTGAGGAAG+AGG | 0.489667 | 1_1:+79926731 | None:intergenic |
| TGAGGAAGAGGATGATGAGA+AGG | 0.491579 | 1_1:+79926743 | None:intergenic |
| TGAAGGAACGGAGGTTGAAG+AGG | 0.492601 | 1_1:+79926845 | None:intergenic |
| GAATAACACGATCACTGATA+AGG | 0.500904 | 1_1:+79926617 | None:intergenic |
| TTCGAGGTTTGTTGCAGGTG+GGG | 0.512536 | 1_1:+79926930 | None:intergenic |
| GTCATCGTTGTTGTTGAAGT+GGG | 0.512819 | 1_1:+79926985 | None:intergenic |
| CTTATGTTGATTCTCACCGT+TGG | 0.515006 | 1_1:-79926589 | Msa0047210:CDS |
| GAGTTCCGAGGCCGGATTTG+AGG | 0.519741 | 1_1:+79926884 | None:intergenic |
| TGGCGCGTGTGATGAATTCG+AGG | 0.527660 | 1_1:+79926914 | None:intergenic |
| AATTCGAGGTTTGTTGCAGG+TGG | 0.530722 | 1_1:+79926928 | None:intergenic |
| GAGGATGATGAGAAGGATGA+TGG | 0.534139 | 1_1:+79926750 | None:intergenic |
| GAAGTTGGATGGGAGGTTGA+AGG | 0.541239 | 1_1:+79926828 | None:intergenic |
| TTCATCAAGAAACAGATCAC+TGG | 0.548790 | 1_1:+79926474 | None:intergenic |
| AACCACAACACCAACCGCAA+CGG | 0.551906 | 1_1:+79926525 | None:intergenic |
| GAATTACAGGATCAAGAAGC+AGG | 0.554856 | 1_1:+79926415 | None:intergenic |
| ATAGCTTCGTGGAAGTTGGA+TGG | 0.557067 | 1_1:+79926817 | None:intergenic |
| AATCTTCAACGTACTTGTTG+CGG | 0.562962 | 1_1:-79929487 | Msa0047210:CDS |
| TGCAGGTGGGGATGATGATG+AGG | 0.565935 | 1_1:+79926942 | None:intergenic |
| TGTCATCGTTGTTGTTGAAG+TGG | 0.568243 | 1_1:+79926984 | None:intergenic |
| TGGACGGCGAGTTCCGAGGC+CGG | 0.568393 | 1_1:+79926876 | None:intergenic |
| TAGCTTCGTGGAAGTTGGAT+GGG | 0.573483 | 1_1:+79926818 | None:intergenic |
| CGTTGTTGTTGAAGTGGGAG+AGG | 0.574822 | 1_1:+79926990 | None:intergenic |
| ACAACAACGATGACAAACTA+CGG | 0.574851 | 1_1:-79926976 | Msa0047210:CDS |
| CAATATTCTTATCGCCGTTG+CGG | 0.580821 | 1_1:-79926539 | Msa0047210:CDS |
| ATTCGAGGTTTGTTGCAGGT+GGG | 0.581531 | 1_1:+79926929 | None:intergenic |
| TGGATGGGAGGTTGAAGGAA+CGG | 0.585117 | 1_1:+79926833 | None:intergenic |
| TGAAGAGGAGTTTCCATGGA+CGG | 0.586287 | 1_1:+79926860 | None:intergenic |
| TTCCGAGGCCGGATTTGAGG+CGG | 0.588969 | 1_1:+79926887 | None:intergenic |
| AGGTTGAAGAGGAGTTTCCA+TGG | 0.595913 | 1_1:+79926856 | None:intergenic |
| TCCATGGACGGCGAGTTCCG+AGG | 0.598894 | 1_1:+79926872 | None:intergenic |
| CTTCGTGGAAGTTGGATGGG+AGG | 0.625803 | 1_1:+79926821 | None:intergenic |
| TGATACGGGAAATAGCTTCG+TGG | 0.625890 | 1_1:+79926806 | None:intergenic |
| AGGCGACCAAAGATAACAAG+AGG | 0.631850 | 1_1:+79926637 | None:intergenic |
| AGCAAGCAAAAGCAATCCAA+CGG | 0.634952 | 1_1:+79926573 | None:intergenic |
| TCGTCGTTCTCATGGCTGCG+TGG | 0.645538 | 1_1:-79926687 | Msa0047210:CDS |
| ATGGGAGGTTGAAGGAACGG+AGG | 0.651337 | 1_1:+79926836 | None:intergenic |
| CAAGAAGCAGGAGCACCAGG+TGG | 0.670977 | 1_1:+79926427 | None:intergenic |
| TTGGATGCCAGAGAAGACTG+AGG | 0.685064 | 1_1:+79926725 | None:intergenic |
| ACGACGGTGAGAATCAACAT+CGG | 0.750572 | 1_1:+79929531 | None:intergenic |
| AGTAAAGAGAATGAACACGA+CGG | 0.782861 | 1_1:+79929515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAAATTAAATAAATTT+TGG | - | chr1_1:79927109-79927128 | Msa0047210:intron | 0.0% |
| !! | AAACAGAAATTATTAAAATT+AGG | + | chr1_1:79926694-79926713 | None:intergenic | 10.0% |
| !!! | TATTTTCTATTTTAGATTTT+CGG | - | chr1_1:79926714-79926733 | Msa0047210:CDS | 10.0% |
| !! | ATTAATGTTAAACTTAAATA+GGG | + | chr1_1:79926761-79926780 | None:intergenic | 10.0% |
| !! | AATTAATGTTAAACTTAAAT+AGG | + | chr1_1:79926762-79926781 | None:intergenic | 10.0% |
| !! | ATTTATTATGATTCATTAAA+TGG | + | chr1_1:79927098-79927117 | None:intergenic | 10.0% |
| !! | AATAAAAATTATGAGACATT+TGG | + | chr1_1:79926600-79926619 | None:intergenic | 15.0% |
| !!! | AAGAATTTAAGTTTGATTTT+TGG | + | chr1_1:79927938-79927957 | None:intergenic | 15.0% |
| !!! | AACTTAAATTCTTTTTCTAT+AGG | - | chr1_1:79927945-79927964 | Msa0047210:intron | 15.0% |
| !!! | TTTAATTCTTTTTGTTAGAT+AGG | - | chr1_1:79928335-79928354 | Msa0047210:intron | 15.0% |
| !! | ATTTAGTGTAATGCTAAATA+GGG | + | chr1_1:79926996-79927015 | None:intergenic | 20.0% |
| !! | TATTTAGTGTAATGCTAAAT+AGG | + | chr1_1:79926997-79927016 | None:intergenic | 20.0% |
| !! | CTAATACCAATTACTATTTA+AGG | - | chr1_1:79927187-79927206 | Msa0047210:intron | 20.0% |
| !! | CATAAACCTTAAATAGTAAT+TGG | + | chr1_1:79927196-79927215 | None:intergenic | 20.0% |
| !! | GAAAAATGAATAATTCAAGA+GGG | + | chr1_1:79927343-79927362 | None:intergenic | 20.0% |
| !! | TGAAAAATGAATAATTCAAG+AGG | + | chr1_1:79927344-79927363 | None:intergenic | 20.0% |
| !!! | ATAGGTATTTTGAGTTTTTT+TGG | + | chr1_1:79927468-79927487 | None:intergenic | 20.0% |
| !! | AAAATACCTATTAAGCTATT+TGG | - | chr1_1:79927477-79927496 | Msa0047210:intron | 20.0% |
| !!! | GAGTTTTTTCTATTCTTTTA+AGG | + | chr1_1:79927599-79927618 | None:intergenic | 20.0% |
| !! | AAAAATAATAGCATATGATG+AGG | - | chr1_1:79927629-79927648 | Msa0047210:intron | 20.0% |
| !! | AATGTAGTTTAGTCATAATA+AGG | + | chr1_1:79927758-79927777 | None:intergenic | 20.0% |
| !!! | AGAATTTTGTAGCTATAATA+TGG | + | chr1_1:79928029-79928048 | None:intergenic | 20.0% |
| !! | ACAAAAAGAATTAAAAGTGA+AGG | + | chr1_1:79928330-79928349 | None:intergenic | 20.0% |
| !! | TTATTTACTTTCAGATTAGT+AGG | + | chr1_1:79928624-79928643 | None:intergenic | 20.0% |
| !!! | ACTTGTTTCTTTTCAATCTT+AGG | - | chr1_1:79926886-79926905 | Msa0047210:CDS | 25.0% |
| ! | TTTAGTGTAATGCTAAATAG+GGG | + | chr1_1:79926995-79927014 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGGTATAGATCAT+GGG | + | chr1_1:79927455-79927474 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTGGTATAGATCA+TGG | + | chr1_1:79927456-79927475 | None:intergenic | 25.0% |
| ! | CTTTAACCAAATAGCTTAAT+AGG | + | chr1_1:79927486-79927505 | None:intergenic | 25.0% |
| !! | CAAACAACAATTCAAGTTTA+AGG | + | chr1_1:79927666-79927685 | None:intergenic | 25.0% |
| !!! | AAGAACTCAAGTTTGATTTT+TGG | + | chr1_1:79927795-79927814 | None:intergenic | 25.0% |
| ! | ATGGTAACATAAAAAAAGAG+AGG | + | chr1_1:79928010-79928029 | None:intergenic | 25.0% |
| ! | AGAGATTTAAAAACGTAGTT+AGG | + | chr1_1:79928275-79928294 | None:intergenic | 25.0% |
| ! | TATTTAGATCATTCCATGAT+TGG | - | chr1_1:79928298-79928317 | Msa0047210:intron | 25.0% |
| ! | AATTCATACGCATAAATGTA+AGG | - | chr1_1:79928380-79928399 | Msa0047210:intron | 25.0% |
| ! | ATTCATACGCATAAATGTAA+GGG | - | chr1_1:79928381-79928400 | Msa0047210:intron | 25.0% |
| ! | TATGTTAGTTGAGTATTTGT+TGG | - | chr1_1:79928474-79928493 | Msa0047210:intron | 25.0% |
| !! | TAGGTCATTTCTTCTAAAAA+TGG | + | chr1_1:79928511-79928530 | None:intergenic | 25.0% |
| !!! | TCATTCTTTTTTAGTGTATG+GGG | + | chr1_1:79928601-79928620 | None:intergenic | 25.0% |
| !!! | GTCATTCTTTTTTAGTGTAT+GGG | + | chr1_1:79928602-79928621 | None:intergenic | 25.0% |
| !! | GAGAAATAGAATTTGATTTC+GGG | + | chr1_1:79928670-79928689 | None:intergenic | 25.0% |
| !! | GGAGAAATAGAATTTGATTT+CGG | + | chr1_1:79928671-79928690 | None:intergenic | 25.0% |
| !!! | ATTCCAATATGCGTTATTTT+TGG | - | chr1_1:79928754-79928773 | Msa0047210:intron | 25.0% |
| !!! | TTCCAATATGCGTTATTTTT+GGG | - | chr1_1:79928755-79928774 | Msa0047210:intron | 25.0% |
| ! | TTATTATATGCTAAGATGTG+AGG | + | chr1_1:79928805-79928824 | None:intergenic | 25.0% |
| !!! | TGATTAGTTCTGTTATAAGA+CGG | + | chr1_1:79928874-79928893 | None:intergenic | 25.0% |
| ATGAATAAATGTGTCGTCTT+AGG | + | chr1_1:79926790-79926809 | None:intergenic | 30.0% | |
| GGTATAAAAACTATCAAGTG+TGG | + | chr1_1:79926952-79926971 | None:intergenic | 30.0% | |
| ! | TTTTATACCCTCTACAATTG+TGG | - | chr1_1:79926963-79926982 | Msa0047210:CDS | 30.0% |
| TAAGTCCTCTATTAACTCAA+GGG | + | chr1_1:79927286-79927305 | None:intergenic | 30.0% | |
| ATAAGTCCTCTATTAACTCA+AGG | + | chr1_1:79927287-79927306 | None:intergenic | 30.0% | |
| TATGAAGAGCGAACAATTTA+GGG | + | chr1_1:79927406-79927425 | None:intergenic | 30.0% | |
| ATATGAAGAGCGAACAATTT+AGG | + | chr1_1:79927407-79927426 | None:intergenic | 30.0% | |
| !! | GTTTTAGTGTGAGTTAGTTA+TGG | + | chr1_1:79927565-79927584 | None:intergenic | 30.0% |
| !!! | GAATTTTCAAGTCAACAAAG+AGG | - | chr1_1:79927860-79927879 | Msa0047210:intron | 30.0% |
| TAACTCTACAAACATCTTGT+TGG | - | chr1_1:79927977-79927996 | Msa0047210:intron | 30.0% | |
| AAGCTATAAAACACTCAAGA+TGG | - | chr1_1:79928191-79928210 | Msa0047210:intron | 30.0% | |
| GATTTAAAAACGTAGTTAGG+TGG | + | chr1_1:79928272-79928291 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr1_1:79928562-79928581 | Msa0047210:intron | 30.0% | |
| !!! | GGTCATTCTTTTTTAGTGTA+TGG | + | chr1_1:79928603-79928622 | None:intergenic | 30.0% |
| ! | AAATAGAATTTGATTTCGGG+TGG | + | chr1_1:79928667-79928686 | None:intergenic | 30.0% |
| TTTCTCCCAAATAATTCAGA+TGG | - | chr1_1:79928684-79928703 | Msa0047210:intron | 30.0% | |
| TTCTCCCAAATAATTCAGAT+GGG | - | chr1_1:79928685-79928704 | Msa0047210:intron | 30.0% | |
| TACCCAAAAATAACGCATAT+TGG | + | chr1_1:79928760-79928779 | None:intergenic | 30.0% | |
| !!! | AAGAGATGTTGGTTTTGATA+CGG | + | chr1_1:79929166-79929185 | None:intergenic | 30.0% |
| TTTCTTGATGAAGAAGAAGA+AGG | - | chr1_1:79929491-79929510 | Msa0047210:CDS | 30.0% | |
| AGTAAAGAGAATGAACACGA+CGG | + | chr1_1:79926442-79926461 | None:intergenic | 35.0% | |
| ! | AATCTTCAACGTACTTGTTG+CGG | - | chr1_1:79926467-79926486 | Msa0047210:CDS | 35.0% |
| ! | AGAGTTTTCTCAATTTCTCG+TGG | - | chr1_1:79926825-79926844 | Msa0047210:CDS | 35.0% |
| GCGACAAACTTGTGTAAATA+GGG | + | chr1_1:79926860-79926879 | None:intergenic | 35.0% | |
| AGCGACAAACTTGTGTAAAT+AGG | + | chr1_1:79926861-79926880 | None:intergenic | 35.0% | |
| GAAACATCCACAATTGTAGA+GGG | + | chr1_1:79926973-79926992 | None:intergenic | 35.0% | |
| GATTGATTGAACGAGATAGA+TGG | + | chr1_1:79927159-79927178 | None:intergenic | 35.0% | |
| CTTATCCCTATTATTGCTGA+AGG | - | chr1_1:79927240-79927259 | Msa0047210:intron | 35.0% | |
| AGGGGGAAATATTTCATGAA+GGG | + | chr1_1:79927267-79927286 | None:intergenic | 35.0% | |
| AAGGGGGAAATATTTCATGA+AGG | + | chr1_1:79927268-79927287 | None:intergenic | 35.0% | |
| AAGTCCTCTATTAACTCAAG+GGG | + | chr1_1:79927285-79927304 | None:intergenic | 35.0% | |
| ! | ATATCTTCAATGCCTTTTCC+TGG | - | chr1_1:79927423-79927442 | Msa0047210:intron | 35.0% |
| GAATTTGCAAGTCAACAAAG+AGG | - | chr1_1:79927714-79927733 | Msa0047210:intron | 35.0% | |
| CATAATATATGCAAGGTCTG+AGG | - | chr1_1:79928569-79928588 | Msa0047210:intron | 35.0% | |
| GCTTCCCATCTGAATTATTT+GGG | + | chr1_1:79928692-79928711 | None:intergenic | 35.0% | |
| AGCTTCCCATCTGAATTATT+TGG | + | chr1_1:79928693-79928712 | None:intergenic | 35.0% | |
| ! | ACATTGTTTTCATGCTCAAG+TGG | + | chr1_1:79928729-79928748 | None:intergenic | 35.0% |
| ACAACAACGATGACAAACTA+CGG | - | chr1_1:79928978-79928997 | Msa0047210:intron | 35.0% | |
| !!! | AGAGATGTTGGTTTTGATAC+GGG | + | chr1_1:79929165-79929184 | None:intergenic | 35.0% |
| ! | GATGAACCTCTTGTTATCTT+TGG | - | chr1_1:79929311-79929330 | Msa0047210:intron | 35.0% |
| GAATAACACGATCACTGATA+AGG | + | chr1_1:79929340-79929359 | None:intergenic | 35.0% | |
| TTCATCAAGAAACAGATCAC+TGG | + | chr1_1:79929483-79929502 | None:intergenic | 35.0% | |
| GTCGTGTTCATTCTCTTTAC+TGG | - | chr1_1:79926441-79926460 | Msa0047210:CDS | 40.0% | |
| GGAAACATCCACAATTGTAG+AGG | + | chr1_1:79926974-79926993 | None:intergenic | 40.0% | |
| !! | CATCTCTCTCTACTTTTCGT+AGG | - | chr1_1:79927070-79927089 | Msa0047210:intron | 40.0% |
| GGGGGAAATATTTCATGAAG+GGG | + | chr1_1:79927266-79927285 | None:intergenic | 40.0% | |
| TTTCCCCCTTGAGTTAATAG+AGG | - | chr1_1:79927278-79927297 | Msa0047210:intron | 40.0% | |
| AGTCCTCTATTAACTCAAGG+GGG | + | chr1_1:79927284-79927303 | None:intergenic | 40.0% | |
| TTCCTCCTTTGATCTGTGAT+TGG | - | chr1_1:79927370-79927389 | Msa0047210:intron | 40.0% | |
| TCCTCCTTTGATCTGTGATT+GGG | - | chr1_1:79927371-79927390 | Msa0047210:intron | 40.0% | |
| TTGTCCCAATCACAGATCAA+AGG | + | chr1_1:79927378-79927397 | None:intergenic | 40.0% | |
| ATAGATCATGGGAATGATCC+AGG | + | chr1_1:79927444-79927463 | None:intergenic | 40.0% | |
| ! | GTGAAGGTATGTACCAATCA+TGG | + | chr1_1:79928314-79928333 | None:intergenic | 40.0% |
| ATACGCATAAATGTAAGGGC+AGG | - | chr1_1:79928385-79928404 | Msa0047210:intron | 40.0% | |
| TACGCATAAATGTAAGGGCA+GGG | - | chr1_1:79928386-79928405 | Msa0047210:intron | 40.0% | |
| ATCCGACCTAACAATTTCGA+TGG | - | chr1_1:79928429-79928448 | Msa0047210:intron | 40.0% | |
| GACCATCGAAATTGTTAGGT+CGG | + | chr1_1:79928434-79928453 | None:intergenic | 40.0% | |
| GACAGACCATCGAAATTGTT+AGG | + | chr1_1:79928438-79928457 | None:intergenic | 40.0% | |
| TACCAACTCAACTAAGCTCA+CGG | + | chr1_1:79928540-79928559 | None:intergenic | 40.0% | |
| TTTCATGCTCAAGTGGTTAG+TGG | + | chr1_1:79928722-79928741 | None:intergenic | 40.0% | |
| ! | GTCATCGTTGTTGTTGAAGT+GGG | + | chr1_1:79928972-79928991 | None:intergenic | 40.0% |
| ! | TGTCATCGTTGTTGTTGAAG+TGG | + | chr1_1:79928973-79928992 | None:intergenic | 40.0% |
| !! | ATGAATTCGAGGTTTGTTGC+AGG | + | chr1_1:79929032-79929051 | None:intergenic | 40.0% |
| CATCTGGAAGAAAGAGATGT+TGG | + | chr1_1:79929177-79929196 | None:intergenic | 40.0% | |
| !! | CTTATGTTGATTCTCACCGT+TGG | - | chr1_1:79929365-79929384 | Msa0047210:intron | 40.0% |
| AGCAAGCAAAAGCAATCCAA+CGG | + | chr1_1:79929384-79929403 | None:intergenic | 40.0% | |
| CAATATTCTTATCGCCGTTG+CGG | - | chr1_1:79929415-79929434 | Msa0047210:CDS | 40.0% | |
| GTGTGGAAATATGACGCAGT+CGG | + | chr1_1:79926935-79926954 | None:intergenic | 45.0% | |
| AGGGGCCTTCAGCAATAATA+GGG | + | chr1_1:79927248-79927267 | None:intergenic | 45.0% | |
| AAGGGGCCTTCAGCAATAAT+AGG | + | chr1_1:79927249-79927268 | None:intergenic | 45.0% | |
| TCCCAATCACAGATCAAAGG+AGG | + | chr1_1:79927375-79927394 | None:intergenic | 45.0% | |
| CATGGGAATGATCCAGGAAA+AGG | + | chr1_1:79927438-79927457 | None:intergenic | 45.0% | |
| ACGCATAAATGTAAGGGCAG+GGG | - | chr1_1:79928387-79928406 | Msa0047210:intron | 45.0% | |
| ACCAACTCAACTAAGCTCAC+GGG | + | chr1_1:79928539-79928558 | None:intergenic | 45.0% | |
| !! | ATTCGAGGTTTGTTGCAGGT+GGG | + | chr1_1:79929028-79929047 | None:intergenic | 45.0% |
| !! | AATTCGAGGTTTGTTGCAGG+TGG | + | chr1_1:79929029-79929048 | None:intergenic | 45.0% |
| TGAAGAGGAGTTTCCATGGA+CGG | + | chr1_1:79929097-79929116 | None:intergenic | 45.0% | |
| AGGTTGAAGAGGAGTTTCCA+TGG | + | chr1_1:79929101-79929120 | None:intergenic | 45.0% | |
| TAGCTTCGTGGAAGTTGGAT+GGG | + | chr1_1:79929139-79929158 | None:intergenic | 45.0% | |
| ATAGCTTCGTGGAAGTTGGA+TGG | + | chr1_1:79929140-79929159 | None:intergenic | 45.0% | |
| GGAAATAGCTTCGTGGAAGT+TGG | + | chr1_1:79929144-79929163 | None:intergenic | 45.0% | |
| TGATACGGGAAATAGCTTCG+TGG | + | chr1_1:79929151-79929170 | None:intergenic | 45.0% | |
| GAGGATGATGAGAAGGATGA+TGG | + | chr1_1:79929207-79929226 | None:intergenic | 45.0% | |
| TGAGGAAGAGGATGATGAGA+AGG | + | chr1_1:79929214-79929233 | None:intergenic | 45.0% | |
| ACGAAGACGATGAGTGAGAT+TGG | + | chr1_1:79929251-79929270 | None:intergenic | 45.0% | |
| AGGCGACCAAAGATAACAAG+AGG | + | chr1_1:79929320-79929339 | None:intergenic | 45.0% | |
| !! | GTTGGATTGCTTTTGCTTGC+TGG | - | chr1_1:79929383-79929402 | Msa0047210:intron | 45.0% |
| CGTAGTTAGGTGGTCATGCT+TGG | + | chr1_1:79928262-79928281 | None:intergenic | 50.0% | |
| CCAACTCAACTAAGCTCACG+GGG | + | chr1_1:79928538-79928557 | None:intergenic | 50.0% | |
| ! | CGTTGTTGTTGAAGTGGGAG+AGG | + | chr1_1:79928967-79928986 | None:intergenic | 50.0% |
| ! | GTGGGGATGATGATGAGGTT+GGG | + | chr1_1:79929010-79929029 | None:intergenic | 50.0% |
| !! | TTCGAGGTTTGTTGCAGGTG+GGG | + | chr1_1:79929027-79929046 | None:intergenic | 50.0% |
| TGAAGGAACGGAGGTTGAAG+AGG | + | chr1_1:79929112-79929131 | None:intergenic | 50.0% | |
| TGGATGGGAGGTTGAAGGAA+CGG | + | chr1_1:79929124-79929143 | None:intergenic | 50.0% | |
| GAAGTTGGATGGGAGGTTGA+AGG | + | chr1_1:79929129-79929148 | None:intergenic | 50.0% | |
| ! | GGATGATGGCGTAGTTCATC+TGG | + | chr1_1:79929193-79929212 | None:intergenic | 50.0% |
| TCCTCTTCCTCAGTCTTCTC+TGG | - | chr1_1:79929222-79929241 | Msa0047210:intron | 50.0% | |
| TTGGATGCCAGAGAAGACTG+AGG | + | chr1_1:79929232-79929251 | None:intergenic | 50.0% | |
| CATCGTCTTCGTCGTTCTCA+TGG | - | chr1_1:79929259-79929278 | Msa0047210:intron | 50.0% | |
| ATTCTTATCGCCGTTGCGGT+TGG | - | chr1_1:79929419-79929438 | Msa0047210:CDS | 50.0% | |
| AACCACAACACCAACCGCAA+CGG | + | chr1_1:79929432-79929451 | None:intergenic | 50.0% | |
| ! | GGACTTTCGTTTTCTCCACC+TGG | - | chr1_1:79929512-79929531 | Msa0047210:CDS | 50.0% |
| TATGACGCAGTCGGCAACGT+AGG | + | chr1_1:79926926-79926945 | None:intergenic | 55.0% | |
| ACTAAGCTCACGGGGACAGT+AGG | + | chr1_1:79928530-79928549 | None:intergenic | 55.0% | |
| CCCCGTGAGCTTAGTTGAGT+TGG | - | chr1_1:79928535-79928554 | Msa0047210:intron | 55.0% | |
| ! | GGTGGGGATGATGATGAGGT+TGG | + | chr1_1:79929011-79929030 | None:intergenic | 55.0% |
| ! | TGCAGGTGGGGATGATGATG+AGG | + | chr1_1:79929015-79929034 | None:intergenic | 55.0% |
| TGGCGCGTGTGATGAATTCG+AGG | + | chr1_1:79929043-79929062 | None:intergenic | 55.0% | |
| GCCAAAGACCGCCTCAAATC+CGG | - | chr1_1:79929059-79929078 | Msa0047210:intron | 55.0% | |
| ATGGGAGGTTGAAGGAACGG+AGG | + | chr1_1:79929121-79929140 | None:intergenic | 55.0% | |
| CTTCGTGGAAGTTGGATGGG+AGG | + | chr1_1:79929136-79929155 | None:intergenic | 55.0% | |
| GCCAGAGAAGACTGAGGAAG+AGG | + | chr1_1:79929226-79929245 | None:intergenic | 55.0% | |
| ! | GCCGGATTTGAGGCGGTCTT+TGG | + | chr1_1:79929063-79929082 | None:intergenic | 60.0% |
| TTCCGAGGCCGGATTTGAGG+CGG | + | chr1_1:79929070-79929089 | None:intergenic | 60.0% | |
| GAGTTCCGAGGCCGGATTTG+AGG | + | chr1_1:79929073-79929092 | None:intergenic | 60.0% | |
| TCGTCGTTCTCATGGCTGCG+TGG | - | chr1_1:79929267-79929286 | Msa0047210:intron | 60.0% | |
| !! | CAAGAAGCAGGAGCACCAGG+TGG | + | chr1_1:79929530-79929549 | None:intergenic | 60.0% |
| GACCGCCTCAAATCCGGCCT+CGG | - | chr1_1:79929065-79929084 | Msa0047210:intron | 65.0% | |
| TCCATGGACGGCGAGTTCCG+AGG | + | chr1_1:79929085-79929104 | None:intergenic | 65.0% | |
| !! | CGCCGTTGCGGTTGGTGTTG+TGG | - | chr1_1:79929427-79929446 | Msa0047210:CDS | 65.0% |
| TGGACGGCGAGTTCCGAGGC+CGG | + | chr1_1:79929081-79929100 | None:intergenic | 70.0% | |
| GCCTCGGAACTCGCCGTCCA+TGG | - | chr1_1:79929081-79929100 | Msa0047210:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79926426 | 79929550 | 79926426 | ID=Msa0047210;Name=Msa0047210 |
| chr1_1 | mRNA | 79926426 | 79929550 | 79926426 | ID=Msa0047210-mRNA-1;Parent=Msa0047210;Name=Msa0047210-mRNA-1;_AED=0.25;_eAED=0.29;_QI=0|0|0|1|0|0|2|0|262 |
| chr1_1 | exon | 79929390 | 79929550 | 79929390 | ID=Msa0047210-mRNA-1:exon:27627;Parent=Msa0047210-mRNA-1 |
| chr1_1 | exon | 79926426 | 79927053 | 79926426 | ID=Msa0047210-mRNA-1:exon:27626;Parent=Msa0047210-mRNA-1 |
| chr1_1 | CDS | 79929390 | 79929550 | 79929390 | ID=Msa0047210-mRNA-1:cds;Parent=Msa0047210-mRNA-1 |
| chr1_1 | CDS | 79926426 | 79927053 | 79926426 | ID=Msa0047210-mRNA-1:cds;Parent=Msa0047210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
