AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933500 MtrunA17_Chr6g0449891 97.375 419 10 1 6 424 1 418 0.0 823
Msa0933500 MtrunA17_Chr4g0058971 72.787 305 80 1 113 417 79 380 9.35e-162 460
Msa0933500 MtrunA17_Chr3g0117501 69.725 327 95 2 95 421 87 409 1.71e-157 451
Msa0933500 MtrunA17_Chr2g0288011 46.358 302 154 4 115 414 100 395 4.88e-76 242
Msa0933500 MtrunA17_Chr3g0097931 43.548 310 171 3 105 414 96 401 6.52e-74 236
Msa0933500 MtrunA17_Chr4g0074541 39.416 411 208 8 13 414 14 392 2.29e-73 235
Msa0933500 MtrunA17_Chr2g0291851 45.253 316 165 6 100 411 81 392 1.44e-72 233
Msa0933500 MtrunA17_Chr4g0046561 41.776 304 160 7 116 413 96 388 1.34e-67 220
Msa0933500 MtrunA17_Chr5g0419001 36.888 347 199 7 91 424 65 404 4.33e-62 206
Msa0933500 MtrunA17_Chr4g0008071 29.630 297 194 7 125 414 19 307 8.63e-24 100
Msa0933500 MtrunA17_Chr3g0114581 28.846 312 191 11 126 421 22 318 1.65e-23 100
Msa0933500 MtrunA17_Chr1g0160071 28.076 317 212 10 104 415 2 307 1.26e-22 98.2
Msa0933500 MtrunA17_Chr8g0382081 27.393 303 201 5 121 414 14 306 4.59e-21 93.2
Msa0933500 MtrunA17_Chr3g0112981 28.146 302 198 7 122 414 28 319 1.71e-19 89.0
Msa0933500 MtrunA17_Chr5g0436341 27.243 301 202 5 122 414 12 303 1.92e-17 82.8
Msa0933500 MtrunA17_Chr4g0056661 26.246 301 207 6 121 414 55 347 1.25e-15 77.8
Msa0933500 MtrunA17_Chr8g0341861 23.101 316 218 7 117 416 167 473 9.38e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933500 AT3G01550.1 67.847 339 104 4 84 420 46 381 1.82e-153 439
Msa0933500 AT5G33320.1 59.024 410 142 8 14 421 22 407 8.57e-151 434
Msa0933500 AT3G01550.2 66.667 339 103 5 84 420 46 376 1.12e-146 422
Msa0933500 AT5G17630.1 42.188 384 211 8 35 416 32 406 3.63e-82 259
Msa0933500 AT5G54800.1 39.529 382 220 5 38 413 11 387 8.79e-76 241
Msa0933500 AT1G61800.1 39.231 390 199 9 36 414 26 388 7.27e-74 236
Msa0933500 AT1G61800.2 38.718 390 201 9 36 414 26 388 4.42e-72 232
Msa0933500 AT5G46110.4 38.700 323 185 8 96 413 83 397 3.00e-66 217
Msa0933500 AT5G46110.1 38.700 323 185 8 96 413 83 397 3.29e-66 217
Msa0933500 AT5G46110.2 40.550 291 162 7 126 413 2 284 6.40e-65 210
Msa0933500 AT5G46110.3 37.461 323 178 9 96 413 83 386 3.46e-60 201
Msa0933500 AT4G03950.1 30.592 304 141 11 119 416 18 257 1.96e-26 107
Msa0933500 AT1G21870.1 28.383 303 188 9 126 415 22 308 2.11e-23 100
Msa0933500 AT1G77610.1 28.814 295 197 9 126 415 16 302 2.00e-22 97.8
Msa0933500 AT3G10290.1 25.545 321 228 5 99 414 38 352 1.24e-21 95.9
Msa0933500 AT1G12500.1 27.401 354 224 8 82 414 12 353 1.60e-21 95.9
Msa0933500 AT5G05820.1 29.560 318 204 7 102 414 3 305 5.69e-21 93.2
Msa0933500 AT3G11320.1 29.338 317 204 7 103 414 4 305 5.88e-21 93.2
Msa0933500 AT5G04160.1 26.885 305 212 6 115 414 8 306 1.26e-20 92.4
Msa0933500 AT2G25520.1 26.959 319 211 9 105 413 3 309 6.81e-16 79.0
Msa0933500 AT1G43310.1 75.556 45 11 0 233 277 43 87 8.81e-16 72.8
Msa0933500 AT1G06470.4 24.611 321 215 8 121 423 77 388 3.35e-15 77.4
Msa0933500 AT1G06470.2 24.611 321 215 8 121 423 77 388 3.35e-15 77.4
Msa0933500 AT1G06470.1 24.611 321 215 8 121 423 77 388 3.35e-15 77.4
Msa0933500 AT1G06470.3 24.611 321 215 8 121 423 77 388 3.35e-15 77.4
Msa0933500 AT5G11230.1 26.332 319 213 9 105 413 3 309 1.75e-14 74.7
Msa0933500 AT4G32390.1 26.498 317 215 10 105 413 3 309 9.64e-14 72.4
Msa0933500 AT5G25400.1 25.532 329 223 9 105 424 3 318 9.66e-14 72.4

Find 82 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAACAGATGCCTACTTTA+TGG 0.163343 6_3:-1971928 Msa0933500:intron
TGTTCTTTCATCTCTTCTTT+TGG 0.166383 6_3:-1972626 Msa0933500:CDS
AATTATGCTTCCTTTGTCTT+TGG 0.270898 6_3:+1969358 None:intergenic
ATCATGAAGTAACCTTAAAA+AGG 0.272883 6_3:+1969190 None:intergenic
GAAGGGAAACAACAAACTTC+TGG 0.281220 6_3:-1975795 Msa0933500:CDS
CCACTTAGACTCACCATTGA+TGG 0.288106 6_3:-1975945 Msa0933500:CDS
TCTTCTCTTCTACCTATAGT+TGG 0.295688 6_3:-1971899 Msa0933500:CDS
CTTCTCTTCTACCTATAGTT+GGG 0.300468 6_3:-1971898 Msa0933500:CDS
AGGTTTGATGAGAGAAAATA+AGG 0.305575 6_3:+1976086 None:intergenic
TTGGTTTCATGTTTGCTACT+TGG 0.322424 6_3:-1975752 Msa0933500:CDS
CACTCACACCATCAAATCTA+TGG 0.327426 6_3:-1972665 Msa0933500:CDS
GTGAAGACTTTCTAACAGTT+TGG 0.333466 6_3:+1975895 None:intergenic
TGGAATGTTGTAACTGTTGC+TGG 0.349362 6_3:+1972975 None:intergenic
GCTTCCTTTGTCTTTGGCAC+TGG 0.363988 6_3:+1969364 None:intergenic
ATTTGGTGGCAGGTTTCATA+TGG 0.368164 6_3:-1969774 Msa0933500:intron
GCTATGTATAAGATCCGTTT+TGG 0.372703 6_3:-1970897 Msa0933500:CDS
CCTTCATCACTCTGTGCCTC+AGG 0.380559 6_3:+1975813 None:intergenic
CAAGACTAATGTTCGTCAAA+AGG 0.381792 6_3:+1972707 None:intergenic
GTTGTAACTGTTGCTGGAAA+TGG 0.381845 6_3:+1972981 None:intergenic
CGTTGGTGATCAATTTGATC+TGG 0.387811 6_3:-1972938 Msa0933500:CDS
TGACAGGTGAGACAGGAGTT+TGG 0.392266 6_3:+1969664 None:intergenic
CTTCAACATTTACAACAAAC+AGG 0.393424 6_3:-1975712 Msa0933500:intron
CCAGTTCGGCTTTGCTTCGT+TGG 0.394551 6_3:-1972955 Msa0933500:CDS
GAAAGGTTCCATAGATTTGA+TGG 0.395306 6_3:+1972657 None:intergenic
CCAACGAAGCAAAGCCGAAC+TGG 0.401347 6_3:+1972955 None:intergenic
ACTTGCCGTGGCTCATACAT+TGG 0.405045 6_3:-1972734 Msa0933500:CDS
TGAACAGATGCCTACTTTAT+GGG 0.406348 6_3:-1971927 Msa0933500:intron
GAAGTGAAAGACACAGAAAA+AGG 0.411026 6_3:+1976130 None:intergenic
TTAACTCTTTCAAAAGAGTA+AGG 0.418575 6_3:-1969337 Msa0933500:three_prime_UTR
CTTGTTCAGTCTCTTCAGCT+TGG 0.421995 6_3:-1975771 Msa0933500:CDS
TGACTGAAGTCTCTTTCAAT+TGG 0.437171 6_3:-1971856 Msa0933500:intron
TTTGGATTTGAAATGAAGAA+AGG 0.438772 6_3:+1975873 None:intergenic
AATTACATACTGCAGATTGC+AGG 0.454301 6_3:+1971250 None:intergenic
GGAACTGCTATTGCACTTGT+TGG 0.456119 6_3:-1969421 Msa0933500:CDS
GCTCTCGAACATTCAATCCT+TGG 0.458325 6_3:+1970918 None:intergenic
AAGGGAAACAACAAACTTCT+GGG 0.458763 6_3:-1975794 Msa0933500:CDS
GTCTCACCTGTCAATGCCCT+TGG 0.465418 6_3:-1969654 Msa0933500:intron
CCTGAGGCACAGAGTGATGA+AGG 0.470545 6_3:-1975813 Msa0933500:CDS
TTCTCTTCTACCTATAGTTG+GGG 0.472836 6_3:-1971897 Msa0933500:CDS
ACCTCACCTGCTGGTATGCA+TGG 0.479845 6_3:+1970861 None:intergenic
TGCTGCTTCTTCTGTTCCTG+AGG 0.480346 6_3:-1975829 Msa0933500:CDS
ATATAGCATATGGTACCAAC+AGG 0.484432 6_3:+1971304 None:intergenic
CCCTCCGAAAATATAGCATA+TGG 0.496477 6_3:+1971294 None:intergenic
AAAGAGAGAGAGATAGAGAG+AGG 0.505465 6_3:-1969313 Msa0933500:three_prime_UTR
CTTGCCGTGGCTCATACATT+GGG 0.506618 6_3:-1972733 Msa0933500:CDS
GTTTGGTTATGTGGGTTGAA+AGG 0.513028 6_3:+1976018 None:intergenic
ACAGTTACAACATTCCAGTT+CGG 0.514414 6_3:-1972969 Msa0933500:CDS
CCGCGATTGATTCGTAAGGT+TGG 0.514774 6_3:+1971490 None:intergenic
GACTTACCAAGGGCATTGAC+AGG 0.516195 6_3:+1969648 None:intergenic
AGGTGTAAGGTTGAAGAAGA+AGG 0.521775 6_3:+1976038 None:intergenic
AGGGCATTGACAGGTGAGAC+AGG 0.524854 6_3:+1969657 None:intergenic
TTTGGTGGCAGGTTTCATAT+GGG 0.526674 6_3:-1969773 Msa0933500:intron
CATAGAGATTATGCATGTTG+AGG 0.527396 6_3:+1976066 None:intergenic
TTTCCGACTGAGTGTGTCAC+AGG 0.527740 6_3:+1969732 None:intergenic
TATGTGGGTTGAAAGGTGTA+AGG 0.528092 6_3:+1976025 None:intergenic
GAAGCAGAATGCAGCCAAAA+CGG 0.532187 6_3:+1970883 None:intergenic
AATGTATGAGCCACGGCAAG+TGG 0.534798 6_3:+1972736 None:intergenic
GTTACTTCATGATCAAATGT+TGG 0.534841 6_3:-1969180 Msa0933500:three_prime_UTR
GTTTGGAAGAAAGAAGAAGA+TGG 0.535689 6_3:+1975912 None:intergenic
GAAGAAACCACCCATAAAGT+AGG 0.541772 6_3:+1971917 None:intergenic
GAAAGAACAACAGTGAAGAA+AGG 0.544323 6_3:+1972640 None:intergenic
CCATCAATGGTGAGTCTAAG+TGG 0.550995 6_3:+1975945 None:intergenic
AAGAGAGAGAGATAGAGAGA+GGG 0.555665 6_3:-1969312 Msa0933500:three_prime_UTR
CTGCTTCCATGCATACCAGC+AGG 0.555668 6_3:-1970867 Msa0933500:intron
GACGAACATTAGTCTTGGCA+AGG 0.558148 6_3:-1972701 Msa0933500:CDS
TATGAGCCACGGCAAGTGGA+AGG 0.564903 6_3:+1972740 None:intergenic
TGGGCATGAAAATCCATCAA+TGG 0.566301 6_3:+1975932 None:intergenic
CATTCCGCGATTGATTCGTA+AGG 0.566766 6_3:+1971486 None:intergenic
AAAACTAATGGCTAATGAAG+AGG 0.569321 6_3:-1971453 Msa0933500:intron
GGCAATCCTTCCACTTGCCG+TGG 0.571563 6_3:-1972746 Msa0933500:CDS
TTTGGAAGAAAGAAGAAGAT+GGG 0.579779 6_3:+1975913 None:intergenic
GATTGGATTCAGCACTGCAA+TGG 0.589169 6_3:-1971516 Msa0933500:CDS
TCTTGTATTCAAGGGCAAAG+AGG 0.597986 6_3:-1969393 Msa0933500:CDS
CTTCCTATATAGGCAAGCCA+AGG 0.608037 6_3:-1970935 Msa0933500:intron
TCTCTTCTACCTATAGTTGG+GGG 0.608716 6_3:-1971896 Msa0933500:CDS
ACAGATGCCTACTTTATGGG+TGG 0.618256 6_3:-1971924 Msa0933500:intron
TAAGCCAGTGCCAAAGACAA+AGG 0.620413 6_3:-1969368 Msa0933500:CDS
GTTTCCCAATGTATGAGCCA+CGG 0.635689 6_3:+1972729 None:intergenic
TCACCTGTGACACACTCAGT+CGG 0.658587 6_3:-1969735 Msa0933500:CDS
ACTGCAGATTGCAGGTACGA+AGG 0.667294 6_3:+1971258 None:intergenic
CTGAGGCACAGAGTGATGAA+GGG 0.684073 6_3:-1975812 Msa0933500:CDS
CCAACCTTACGAATCAATCG+CGG 0.759621 6_3:-1971490 Msa0933500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAATAAAAAGAATTAA+TGG + chr6_3:1969904-1969923 None:intergenic 10.0%
!!! ATCTCATATTTTTTTATTTA+TGG + chr6_3:1970107-1970126 None:intergenic 10.0%
!!! TTTTATTGAATTATCATTTT+AGG - chr6_3:1970389-1970408 Msa0933500:intron 10.0%
!! AATTTAATTAAGGAAAATTT+AGG - chr6_3:1970529-1970548 Msa0933500:intron 10.0%
!! TAAAGAATACAAAAAATTAA+TGG - chr6_3:1970554-1970573 Msa0933500:intron 10.0%
!! TTTATAATTTCAATACATTT+AGG - chr6_3:1972956-1972975 Msa0933500:CDS 10.0%
!! TTATAATTTCAATACATTTA+GGG - chr6_3:1972957-1972976 Msa0933500:CDS 10.0%
!! AAAAAAAAAAAAAAGGTTTG+AGG + chr6_3:1970586-1970605 None:intergenic 15.0%
!!! TTAATTCTTTAATCCTTTTA+AGG - chr6_3:1969948-1969967 Msa0933500:intron 15.0%
!! ATTATGTTTAATTCCTTAAA+AGG + chr6_3:1969964-1969983 None:intergenic 15.0%
!! AATTCATATTTCTTCATTTA+TGG + chr6_3:1970020-1970039 None:intergenic 15.0%
!!! GTTTTATTTGTACAAAAAAA+AGG - chr6_3:1970197-1970216 Msa0933500:intron 15.0%
!!! TTAATTCTTTAATCCTTTTA+AGG + chr6_3:1969948-1969967 None:intergenic 15.0%
!! AAAAAAAAAAAAAAGGTTTG+AGG - chr6_3:1970586-1970605 Msa0933500:intron 15.0%
!!! AGTTAAATTTGCTTATATTT+AGG + chr6_3:1970899-1970918 None:intergenic 15.0%
!!! ATAAGCAAATTTAACTTTTT+AGG - chr6_3:1970903-1970922 Msa0933500:CDS 15.0%
!!! TTCATTTTTTTGCATTTATT+TGG - chr6_3:1971216-1971235 Msa0933500:intron 15.0%
!!! TTTTGATTTTAGATGAAAAT+TGG - chr6_3:1972341-1972360 Msa0933500:intron 15.0%
!!! TATCCTTATTTAAATAATTG+AGG - chr6_3:1974219-1974238 Msa0933500:intron 15.0%
!!! TAAAAAGCATTTACTATAAT+CGG + chr6_3:1974650-1974669 None:intergenic 15.0%
!!! TTTAAAATGAAACATTTTTC+TGG - chr6_3:1974759-1974778 Msa0933500:intron 15.0%
!!! TCAATTTTTTTTTTACACAT+GGG - chr6_3:1974782-1974801 Msa0933500:intron 15.0%
!!! AAATAGTATATTTGGTTTAT+AGG - chr6_3:1975034-1975053 Msa0933500:intron 15.0%
!! GAAAATTAAAAGAAGAAATA+TGG + chr6_3:1975680-1975699 None:intergenic 15.0%
!! AAAATAAAAAAATTGATGAG+TGG + chr6_3:1975952-1975971 None:intergenic 15.0%
!!! AAAGAAATGTCTTTTTAATT+TGG - chr6_3:1976105-1976124 Msa0933500:CDS 15.0%
!!! AACAAACAGGTATTTTTTTA+AGG - chr6_3:1969511-1969530 Msa0933500:intron 20.0%
!!! ACAAACAGGTATTTTTTTAA+GGG - chr6_3:1969512-1969531 Msa0933500:intron 20.0%
!! TACTTATTAAGTCATTCATT+TGG - chr6_3:1969636-1969655 Msa0933500:intron 20.0%
!!! GATTTTTTAACTCTTTCTTA+AGG - chr6_3:1969658-1969677 Msa0933500:CDS 20.0%
!! AAAAAGAATCGTGTATTTAA+TGG + chr6_3:1970049-1970068 None:intergenic 20.0%
!!! TTTTTTGAAGAATAGAAAAG+TGG - chr6_3:1970175-1970194 Msa0933500:intron 20.0%
!! TATGAGAGATGAATAATATT+CGG + chr6_3:1970426-1970445 None:intergenic 20.0%
!! ATTGTGTTTAATTCCTTAAA+AGG - chr6_3:1970494-1970513 Msa0933500:intron 20.0%
!!! AGTCAAATTTGCTTATATTT+AGG - chr6_3:1970996-1971015 Msa0933500:intron 20.0%
!! TACTTATTAAGTCATTCATT+TGG - chr6_3:1969636-1969655 Msa0933500:intron 20.0%
!! TCAAATGAATAACTTTACAA+GGG + chr6_3:1971131-1971150 None:intergenic 20.0%
!! ATCAAATGAATAACTTTACA+AGG + chr6_3:1971132-1971151 None:intergenic 20.0%
!! TGTAAAGTTATTCATTTGAT+TGG - chr6_3:1971132-1971151 Msa0933500:intron 20.0%
!!! TTTTTTTGCATTTATTTGGA+TGG - chr6_3:1971220-1971239 Msa0933500:intron 20.0%
!! AAAAAATTGGTCATAGTTAT+CGG - chr6_3:1971482-1971501 Msa0933500:CDS 20.0%
!!! TCTCTAATGTATGTATATTT+TGG - chr6_3:1971569-1971588 Msa0933500:intron 20.0%
!!! AGAGTATCATAATTCAATAT+GGG + chr6_3:1971801-1971820 None:intergenic 20.0%
!!! TAGAGTATCATAATTCAATA+TGG + chr6_3:1971802-1971821 None:intergenic 20.0%
!!! AATAAAAAAGTGATTAGCTA+CGG + chr6_3:1971868-1971887 None:intergenic 20.0%
!! ACTAACAAAATAGATATTTG+AGG + chr6_3:1972754-1972773 None:intergenic 20.0%
!!! ATCTATTTTGTTAGTTAGTT+TGG - chr6_3:1972759-1972778 Msa0933500:intron 20.0%
!!! ATCTTTTGTTAGTAAATTGA+CGG + chr6_3:1972818-1972837 None:intergenic 20.0%
!! TAAAAAGTCGTGATATTATA+AGG + chr6_3:1974038-1974057 None:intergenic 20.0%
!! AATTGAATAAAATTCATGCA+AGG - chr6_3:1974117-1974136 Msa0933500:intron 20.0%
!! CTTCCTCAATTATTTAAATA+AGG + chr6_3:1974225-1974244 None:intergenic 20.0%
!! CATATTAATTATAATCTGCA+TGG - chr6_3:1974435-1974454 Msa0933500:intron 20.0%
!!! TTTTTTTTTATATCCGGATA+TGG - chr6_3:1974524-1974543 Msa0933500:intron 20.0%
!!! GTCAATTTTTTTTTTACACA+TGG - chr6_3:1974781-1974800 Msa0933500:intron 20.0%
!!! GAATAAATATTGTTGACTTA+TGG - chr6_3:1974890-1974909 Msa0933500:intron 20.0%
!!! AACAGAAGATATTTTTTGTT+TGG - chr6_3:1974992-1975011 Msa0933500:intron 20.0%
!! AAGTAAGTTACTATTACTAA+AGG + chr6_3:1975373-1975392 None:intergenic 20.0%
!!! AAATTTTGGTTTGGTTATGT+GGG + chr6_3:1969203-1969222 None:intergenic 25.0%
!!! TTTTGAAAAGGGTGAAATTT+TGG + chr6_3:1969217-1969236 None:intergenic 25.0%
!!! GAGAATGAGTATTTTGAAAA+GGG + chr6_3:1969228-1969247 None:intergenic 25.0%
!!! TGAGAATGAGTATTTTGAAA+AGG + chr6_3:1969229-1969248 None:intergenic 25.0%
!! TTTGGATTTGAAATGAAGAA+AGG + chr6_3:1969340-1969359 None:intergenic 25.0%
! CTTCATTTCAAATCCAAAAA+TGG - chr6_3:1969342-1969361 Msa0933500:exon 25.0%
!!! ACTCTAAAAGAATCCATTTT+TGG + chr6_3:1969358-1969377 None:intergenic 25.0%
!!! CAAACAGGTATTTTTTTAAG+GGG - chr6_3:1969513-1969532 Msa0933500:intron 25.0%
! GAATAATATTCGGTAGTTAA+TGG + chr6_3:1970416-1970435 None:intergenic 25.0%
! CTCTCATATTTCTTCATTTA+TGG - chr6_3:1970438-1970457 Msa0933500:intron 25.0%
! AAACATTATTAGTCATATGG+CGG + chr6_3:1970848-1970867 None:intergenic 25.0%
! GTCAAACATTATTAGTCATA+TGG + chr6_3:1970851-1970870 None:intergenic 25.0%
!! AATTTGCTTATATTTAGGAC+CGG + chr6_3:1971001-1971020 None:intergenic 25.0%
! CATTCAATGAATAATGTATG+TGG - chr6_3:1970928-1970947 Msa0933500:intron 25.0%
! AATGTATGTGGTTCATATTA+TGG - chr6_3:1970940-1970959 Msa0933500:intron 25.0%
! CATTCAATTAATGATGTATG+TGG + chr6_3:1970967-1970986 None:intergenic 25.0%
!! AATTTGCTTATATTTAGGAC+CGG - chr6_3:1971001-1971020 Msa0933500:intron 25.0%
!!! GTTTTTTTAACCCTTTCTTT+AGG - chr6_3:1971052-1971071 Msa0933500:intron 25.0%
! ACAAATTAAGCCTAAAGAAA+GGG + chr6_3:1971065-1971084 None:intergenic 25.0%
! TACAAATTAAGCCTAAAGAA+AGG + chr6_3:1971066-1971085 None:intergenic 25.0%
! TATGATACACTATGATGATA+AGG - chr6_3:1971612-1971631 Msa0933500:intron 25.0%
! ATAAGGTTTGATTCATTCTA+AGG - chr6_3:1971629-1971648 Msa0933500:intron 25.0%
! ACTACATTAACTACTCTAAT+TGG + chr6_3:1971680-1971699 None:intergenic 25.0%
!! GTTAGAGAGTTAGTATATTT+TGG - chr6_3:1971767-1971786 Msa0933500:intron 25.0%
! GATTCAAGTCATAAATCAAA+CGG + chr6_3:1971913-1971932 None:intergenic 25.0%
!!! TTGAATCGTGAATTATTTTG+AGG - chr6_3:1971926-1971945 Msa0933500:intron 25.0%
!! GTTAGATTTTACTCATGATT+CGG - chr6_3:1972044-1972063 Msa0933500:intron 25.0%
!!! TGCATTGGTTGTTTATTATT+AGG - chr6_3:1972192-1972211 Msa0933500:intron 25.0%
! AATGTGTCCTTTAATTAGTT+TGG - chr6_3:1972727-1972746 Msa0933500:CDS 25.0%
!!! GGATGTTTTTTGTAATTTGT+TGG - chr6_3:1972846-1972865 Msa0933500:intron 25.0%
!!! TAGCTGACTAATTGTTATTT+TGG + chr6_3:1973015-1973034 None:intergenic 25.0%
! ACCAAATTCAAATGATTACA+TGG - chr6_3:1973089-1973108 Msa0933500:intron 25.0%
! CCAAATTCAAATGATTACAT+GGG - chr6_3:1973090-1973109 Msa0933500:intron 25.0%
! AAATGTCCTTGTTACATATA+TGG - chr6_3:1973137-1973156 Msa0933500:intron 25.0%
!!! TGATGGATATCTAATTGTTT+TGG - chr6_3:1973231-1973250 Msa0933500:intron 25.0%
! ATATCTAATAAGACCTTGTT+TGG - chr6_3:1973415-1973434 Msa0933500:intron 25.0%
! TTAAACAATATAGCCAAACA+AGG + chr6_3:1973431-1973450 None:intergenic 25.0%
! TAGCAGAACTACATATTATT+TGG + chr6_3:1973628-1973647 None:intergenic 25.0%
!!! TGTTTTGAGCAAAAAACTAA+TGG - chr6_3:1973745-1973764 Msa0933500:intron 25.0%
! TATTGAGTAAAGTTTACGTA+GGG + chr6_3:1974069-1974088 None:intergenic 25.0%
! GACAACATATATTTAACCAT+TGG - chr6_3:1974169-1974188 Msa0933500:intron 25.0%
! ATAGCATATAAAGTTACCAA+TGG + chr6_3:1974188-1974207 None:intergenic 25.0%
!! AATTCCCAATCAATTTTATC+CGG - chr6_3:1974499-1974518 Msa0933500:intron 25.0%
!!! AAATGCTTTTTATATCGATG+TGG - chr6_3:1974658-1974677 Msa0933500:intron 25.0%
!!! AACTGATTTTAAGTTTGTGT+AGG - chr6_3:1974939-1974958 Msa0933500:intron 25.0%
!! CTTCTGTTTTACATGAAATA+TGG + chr6_3:1974980-1974999 None:intergenic 25.0%
! ATTTCTGAGTTTGTCATTAA+AGG - chr6_3:1975139-1975158 Msa0933500:intron 25.0%
!! ACTATTTTCAGATTAGTGTT+AGG - chr6_3:1975191-1975210 Msa0933500:intron 25.0%
! CTAATGATCTGTTTATGTTA+AGG + chr6_3:1975252-1975271 None:intergenic 25.0%
! ATCATTAGAGTATGTAACAT+TGG - chr6_3:1975264-1975283 Msa0933500:intron 25.0%
!! AGTATGTAACATTGGTATTT+TGG - chr6_3:1975272-1975291 Msa0933500:intron 25.0%
! CAAACATTAGCAACTAAATA+TGG + chr6_3:1975342-1975361 None:intergenic 25.0%
!! TTCAAGTACTTGCAAATTTT+TGG - chr6_3:1975605-1975624 Msa0933500:intron 25.0%
! ACAAAAATTGCTACAACTTA+TGG - chr6_3:1975641-1975660 Msa0933500:intron 25.0%
! CAAAAATTGCTACAACTTAT+GGG - chr6_3:1975642-1975661 Msa0933500:intron 25.0%
! GAAGAAATATGGATAGTAAA+TGG + chr6_3:1975669-1975688 None:intergenic 25.0%
! CACAAAAAAGGAAATGAAAA+TGG + chr6_3:1975752-1975771 None:intergenic 25.0%
!!! CATTTTCATTTCCTTTTTTG+TGG - chr6_3:1975750-1975769 Msa0933500:CDS 25.0%
! TTAACTCTTTCAAAAGAGTA+AGG - chr6_3:1975873-1975892 Msa0933500:CDS 25.0%
!!! TTTATTTTTTTTGTTGGGTG+AGG - chr6_3:1975970-1975989 Msa0933500:CDS 25.0%
!!! TTATTTTTTTTGTTGGGTGA+GGG - chr6_3:1975971-1975990 Msa0933500:CDS 25.0%
! ATCATGAAGTAACCTTAAAA+AGG + chr6_3:1976023-1976042 None:intergenic 25.0%
AGGTTTGATGAGAGAAAATA+AGG + chr6_3:1969127-1969146 None:intergenic 30.0%
!!! GAAATTTTGGTTTGGTTATG+TGG + chr6_3:1969204-1969223 None:intergenic 30.0%
!!! AAAAGGGTGAAATTTTGGTT+TGG + chr6_3:1969212-1969231 None:intergenic 30.0%
TTTGGAAGAAAGAAGAAGAT+GGG + chr6_3:1969300-1969319 None:intergenic 30.0%
CTTCAACATTTACAACAAAC+AGG - chr6_3:1969498-1969517 Msa0933500:intron 30.0%
TTATTCATAATTACTCCCTC+CGG - chr6_3:1970872-1970891 Msa0933500:CDS 30.0%
!! GCTTAATTTGTATACACTGT+CGG - chr6_3:1971074-1971093 Msa0933500:intron 30.0%
! CATTCTCTTTTAACACAAGA+AGG - chr6_3:1971343-1971362 Msa0933500:CDS 30.0%
AAATGTAATTAGAGTCGTGT+TGG + chr6_3:1971398-1971417 None:intergenic 30.0%
AAGGCAATAATTTGGAAAGA+TGG + chr6_3:1971428-1971447 None:intergenic 30.0%
! CATTAGAGATTTGTTCAGTT+TGG + chr6_3:1971558-1971577 None:intergenic 30.0%
! TTCATTCTAAGGAATCACTA+AGG - chr6_3:1971640-1971659 Msa0933500:intron 30.0%
TCACTAAGGATATGGAATAA+TGG - chr6_3:1971654-1971673 Msa0933500:intron 30.0%
! TGATTAGCTACGGTAAATTT+AGG + chr6_3:1971858-1971877 None:intergenic 30.0%
!!! AATCACTTTTTTATTGTCGC+TGG - chr6_3:1971873-1971892 Msa0933500:CDS 30.0%
! TTACTCATGATTCGGAAAAT+AGG - chr6_3:1972052-1972071 Msa0933500:intron 30.0%
! CTTTCTTTTTGATCCTCTTT+TGG - chr6_3:1972153-1972172 Msa0933500:intron 30.0%
!!! GATCTACTAATTTTTGGTCT+AGG + chr6_3:1972313-1972332 None:intergenic 30.0%
ACCAAAAATTAGTAGATCAC+AGG - chr6_3:1972315-1972334 Msa0933500:intron 30.0%
! ACCTGTGATCTACTAATTTT+TGG + chr6_3:1972319-1972338 None:intergenic 30.0%
ACAAGACATTCACCAAATAT+TGG + chr6_3:1972372-1972391 None:intergenic 30.0%
! TGTTCTTTCATCTCTTCTTT+TGG - chr6_3:1972584-1972603 Msa0933500:intron 30.0%
! GTTCTTTCATCTCTTCTTTT+GGG - chr6_3:1972585-1972604 Msa0933500:intron 30.0%
!! CCAAAATCGATGTTTTTCAA+CGG + chr6_3:1972641-1972660 None:intergenic 30.0%
CTAATTAAAGGACACATTCA+TGG + chr6_3:1972725-1972744 None:intergenic 30.0%
TTGAGGACCAAACTAATTAA+AGG + chr6_3:1972737-1972756 None:intergenic 30.0%
ACTAACAAAAGATACACTCA+TGG - chr6_3:1972825-1972844 Msa0933500:intron 30.0%
CCCATGTAATCATTTGAATT+TGG + chr6_3:1973093-1973112 None:intergenic 30.0%
! GTAACAAGGACATTTTCTTA+GGG + chr6_3:1973132-1973151 None:intergenic 30.0%
! TGTAACAAGGACATTTTCTT+AGG + chr6_3:1973133-1973152 None:intergenic 30.0%
CTGTATAGTAGAAAATGACT+TGG - chr6_3:1973180-1973199 Msa0933500:intron 30.0%
ACATTAGTACTTGTATGCAT+AGG + chr6_3:1973461-1973480 None:intergenic 30.0%
AATAAGCTGAAAACAGTTGA+CGG - chr6_3:1973572-1973591 Msa0933500:intron 30.0%
AAAACTAATGGCTAATGAAG+AGG - chr6_3:1973757-1973776 Msa0933500:intron 30.0%
CAACAGGAAAAATGAAATGA+TGG + chr6_3:1973893-1973912 None:intergenic 30.0%
!! CATCATTTCATTTTTCCTGT+TGG - chr6_3:1973891-1973910 Msa0933500:intron 30.0%
! GGTACCATATGCTATATTTT+CGG - chr6_3:1973912-1973931 Msa0933500:intron 30.0%
CTATTGAGTAAAGTTTACGT+AGG + chr6_3:1974070-1974089 None:intergenic 30.0%
AATTGAGGAAGAGAAAAATG+TGG - chr6_3:1974234-1974253 Msa0933500:intron 30.0%
! TAGCATGTTACTTCCTATAT+AGG - chr6_3:1974265-1974284 Msa0933500:intron 30.0%
! ATTCCCAATCAATTTTATCC+GGG - chr6_3:1974500-1974519 Msa0933500:intron 30.0%
AAACCCGGATAAAATTGATT+GGG + chr6_3:1974506-1974525 None:intergenic 30.0%
AAAACCCGGATAAAATTGAT+TGG + chr6_3:1974507-1974526 None:intergenic 30.0%
CCGGATATAAAAAAAAAACC+CGG + chr6_3:1974521-1974540 None:intergenic 30.0%
!!! CCGGGTTTTTTTTTTATATC+CGG - chr6_3:1974518-1974537 Msa0933500:intron 30.0%
TTTATATCCGGATATGGATT+TGG - chr6_3:1974530-1974549 Msa0933500:intron 30.0%
! TTGTTGATAAATCACGTATC+CGG - chr6_3:1974553-1974572 Msa0933500:intron 30.0%
TGAAATCAAATCCAGTTATG+TGG - chr6_3:1974610-1974629 Msa0933500:intron 30.0%
TTAAAACCAATCCACATAAC+TGG + chr6_3:1974624-1974643 None:intergenic 30.0%
AAGAAACTTCTTGTATGAGA+TGG + chr6_3:1974820-1974839 None:intergenic 30.0%
TCGAATGATGTACTTTATTC+AGG - chr6_3:1974839-1974858 Msa0933500:intron 30.0%
CTCCATGATAAAAGGAAAAT+TGG + chr6_3:1975165-1975184 None:intergenic 30.0%
! CAATTTTCCTTTTATCATGG+AGG - chr6_3:1975163-1975182 Msa0933500:intron 30.0%
GTGACATCAATAATTGATGT+TGG - chr6_3:1975403-1975422 Msa0933500:intron 30.0%
TGCAAGTACTTGAAAATATG+TGG + chr6_3:1975599-1975618 None:intergenic 30.0%
! TTGGAGTTTTCTTGTATTCA+AGG - chr6_3:1975808-1975827 Msa0933500:CDS 30.0%
! TGGAGTTTTCTTGTATTCAA+GGG - chr6_3:1975809-1975828 Msa0933500:CDS 30.0%
AATTATGCTTCCTTTGTCTT+TGG + chr6_3:1975855-1975874 None:intergenic 30.0%
!!! TATTTTTTTTGTTGGGTGAG+GGG - chr6_3:1975972-1975991 Msa0933500:CDS 30.0%
! CTAGAAGTTTGTCCTTTTTA+AGG - chr6_3:1976008-1976027 Msa0933500:CDS 30.0%
GTTACTTCATGATCAAATGT+TGG - chr6_3:1976030-1976049 Msa0933500:CDS 30.0%
GAAGTGAAAGACACAGAAAA+AGG + chr6_3:1969083-1969102 None:intergenic 35.0%
CATAGAGATTATGCATGTTG+AGG + chr6_3:1969147-1969166 None:intergenic 35.0%
GTTTGGAAGAAAGAAGAAGA+TGG + chr6_3:1969301-1969320 None:intergenic 35.0%
GTGAAGACTTTCTAACAGTT+TGG + chr6_3:1969318-1969337 None:intergenic 35.0%
AAGGGAAACAACAAACTTCT+GGG - chr6_3:1969416-1969435 Msa0933500:CDS 35.0%
! TTGGTTTCATGTTTGCTACT+TGG - chr6_3:1969458-1969477 Msa0933500:intron 35.0%
AAACACTATCAGTCATATGG+CGG + chr6_3:1969601-1969620 None:intergenic 35.0%
GTCAAACACTATCAGTCATA+TGG + chr6_3:1969604-1969623 None:intergenic 35.0%
TAACTGCCGAATTATGAAAC+CGG - chr6_3:1969762-1969781 Msa0933500:CDS 35.0%
TTAACTACCGAGGAAAACTT+CGG - chr6_3:1969791-1969810 Msa0933500:intron 35.0%
! CCGAAGTTTTCAATTTTCCT+CGG + chr6_3:1970628-1970647 None:intergenic 35.0%
CCGAGGAAAATTGAAAACTT+CGG - chr6_3:1969824-1969843 Msa0933500:intron 35.0%
AAAAAGGTTTGAGGATTCCT+CGG + chr6_3:1970595-1970614 None:intergenic 35.0%
AAAAAGGTTTGAGGATTCCT+CGG - chr6_3:1970595-1970614 Msa0933500:intron 35.0%
CCGAGGAAAATTGAAAACTT+CGG + chr6_3:1969824-1969843 None:intergenic 35.0%
! CCGAAGTTTTCAATTTTCCT+CGG - chr6_3:1970628-1970647 Msa0933500:intron 35.0%
TTAACTACCGAGGAAAACTT+CGG + chr6_3:1969791-1969810 None:intergenic 35.0%
TAACTGCCGAATTATGAAAC+CGG + chr6_3:1969762-1969781 None:intergenic 35.0%
TCTTACTTCGTATACACTGA+CGG - chr6_3:1970782-1970801 Msa0933500:intron 35.0%
!! GATTGGTTGTGATTTGTTGA+AGG - chr6_3:1971149-1971168 Msa0933500:intron 35.0%
CATCTTACCATACATGTTAG+CGG - chr6_3:1971505-1971524 Msa0933500:CDS 35.0%
! GTTCAGTTTGGTATCGAATT+TGG + chr6_3:1971546-1971565 None:intergenic 35.0%
CTAAGGAATCACTAAGGATA+TGG - chr6_3:1971646-1971665 Msa0933500:intron 35.0%
ACGCATAGAAACATAGAACA+TGG + chr6_3:1972113-1972132 None:intergenic 35.0%
CAATTGAGAACAACCAAAAG+AGG + chr6_3:1972169-1972188 None:intergenic 35.0%
TGTTCTCAATTGCAATGCAT+TGG - chr6_3:1972177-1972196 Msa0933500:intron 35.0%
ACAGTTACAACATTCCAGTT+CGG - chr6_3:1972241-1972260 Msa0933500:intron 35.0%
!! AAATTGGCTCGTCCAATATT+TGG - chr6_3:1972357-1972376 Msa0933500:intron 35.0%
TGTTTGTGTTTCACAGCTTA+CGG - chr6_3:1972443-1972462 Msa0933500:intron 35.0%
CAAGACTAATGTTCGTCAAA+AGG + chr6_3:1972506-1972525 None:intergenic 35.0%
!! CTTTTGACGAACATTAGTCT+TGG - chr6_3:1972504-1972523 Msa0933500:intron 35.0%
GAAAGGTTCCATAGATTTGA+TGG + chr6_3:1972556-1972575 None:intergenic 35.0%
GAAAGAACAACAGTGAAGAA+AGG + chr6_3:1972573-1972592 None:intergenic 35.0%
!!! CCGTTGAAAAACATCGATTT+TGG - chr6_3:1972638-1972657 Msa0933500:CDS 35.0%
!! TAATTTGTTGGTTTCCCTAG+TGG - chr6_3:1972858-1972877 Msa0933500:intron 35.0%
TCAAACCAATCAATCCACTA+GGG + chr6_3:1972875-1972894 None:intergenic 35.0%
ATCAAACCAATCAATCCACT+AGG + chr6_3:1972876-1972895 None:intergenic 35.0%
!!! GGTTTTAAACCAAGAAGGAA+AGG + chr6_3:1972913-1972932 None:intergenic 35.0%
!!! TTTTGGTTCCTAAATGTACG+AGG + chr6_3:1972998-1973017 None:intergenic 35.0%
! CACGCAGTTTAGTAATTTGT+AGG - chr6_3:1973039-1973058 Msa0933500:intron 35.0%
ATGACGCCATATATGTAACA+AGG + chr6_3:1973146-1973165 None:intergenic 35.0%
AAGTAGGCATCTGTTCATTT+AGG + chr6_3:1973280-1973299 None:intergenic 35.0%
ATGAACAGATGCCTACTTTA+TGG - chr6_3:1973282-1973301 Msa0933500:intron 35.0%
TGAACAGATGCCTACTTTAT+GGG - chr6_3:1973283-1973302 Msa0933500:intron 35.0%
TCTTCTCTTCTACCTATAGT+TGG - chr6_3:1973311-1973330 Msa0933500:intron 35.0%
CTTCTCTTCTACCTATAGTT+GGG - chr6_3:1973312-1973331 Msa0933500:intron 35.0%
TTCTCTTCTACCTATAGTTG+GGG - chr6_3:1973313-1973332 Msa0933500:intron 35.0%
TGACTGAAGTCTCTTTCAAT+TGG - chr6_3:1973354-1973373 Msa0933500:intron 35.0%
CTAAAGCAAGAATAACTTCG+TGG - chr6_3:1973389-1973408 Msa0933500:intron 35.0%
!! TGCTACTGTGAGATTGATTT+TGG - chr6_3:1973643-1973662 Msa0933500:intron 35.0%
!! ACTTGAAGCATGTTTTTGAC+AGG - chr6_3:1973831-1973850 Msa0933500:intron 35.0%
!! ATGTTTTTGACAGGAAGCTT+TGG - chr6_3:1973840-1973859 Msa0933500:intron 35.0%
ATATAGCATATGGTACCAAC+AGG + chr6_3:1973909-1973928 None:intergenic 35.0%
! ACCATATGCTATATTTTCGG+AGG - chr6_3:1973915-1973934 Msa0933500:intron 35.0%
! CCATATGCTATATTTTCGGA+GGG - chr6_3:1973916-1973935 Msa0933500:intron 35.0%
AATTACATACTGCAGATTGC+AGG + chr6_3:1973963-1973982 None:intergenic 35.0%
ATGCAAGGACTAAGCATAAA+AGG - chr6_3:1974132-1974151 Msa0933500:intron 35.0%
! GCTATGTATAAGATCCGTTT+TGG - chr6_3:1974313-1974332 Msa0933500:intron 35.0%
! GAATGAGCAACTAAGCTTTT+AGG + chr6_3:1974476-1974495 None:intergenic 35.0%
TCAACAACCAAATCCATATC+CGG + chr6_3:1974540-1974559 None:intergenic 35.0%
!! CCATAGTTGCTCATTTTAAC+CGG + chr6_3:1974575-1974594 None:intergenic 35.0%
! TGGATTTGATTTCACAACAC+CGG + chr6_3:1974604-1974623 None:intergenic 35.0%
TCAAATCCAGTTATGTGGAT+TGG - chr6_3:1974615-1974634 Msa0933500:intron 35.0%
! CACATGTGCAATGAAGATTT+TGG - chr6_3:1974722-1974741 Msa0933500:intron 35.0%
!! GATTGTGCGTTGATTAAACA+CGG - chr6_3:1975112-1975131 Msa0933500:intron 35.0%
!! ATTGTGCGTTGATTAAACAC+GGG - chr6_3:1975113-1975132 Msa0933500:intron 35.0%
! GGCCAATTTTCCTTTTATCA+TGG - chr6_3:1975160-1975179 Msa0933500:intron 35.0%
! TTTCCTTTTATCATGGAGGT+CGG - chr6_3:1975167-1975186 Msa0933500:intron 35.0%
ATGTTGGAGCTTAATGCATT+TGG - chr6_3:1975419-1975438 Msa0933500:intron 35.0%
CCAAATTAGGACCACAAAAA+AGG + chr6_3:1975764-1975783 None:intergenic 35.0%
!!! CCTTTTTTGTGGTCCTAATT+TGG - chr6_3:1975761-1975780 Msa0933500:CDS 35.0%
AGGTGTAAGGTTGAAGAAGA+AGG + chr6_3:1969175-1969194 None:intergenic 40.0%
! TATGTGGGTTGAAAGGTGTA+AGG + chr6_3:1969188-1969207 None:intergenic 40.0%
! GTTTGGTTATGTGGGTTGAA+AGG + chr6_3:1969195-1969214 None:intergenic 40.0%
TGGGCATGAAAATCCATCAA+TGG + chr6_3:1969281-1969300 None:intergenic 40.0%
GAAGGGAAACAACAAACTTC+TGG - chr6_3:1969415-1969434 Msa0933500:CDS 40.0%
CATATGGCGGTTATGGTTAT+TGG + chr6_3:1969588-1969607 None:intergenic 40.0%
TATCAGTCATATGGCGGTTA+TGG + chr6_3:1969595-1969614 None:intergenic 40.0%
TGCTGTTGACACATTGCAAA+AGG - chr6_3:1969697-1969716 Msa0933500:CDS 40.0%
! AAAATACGTTTTTGCCCCCT+CGG - chr6_3:1969735-1969754 Msa0933500:CDS 40.0%
! TTAACTGCCGAAGTTTTCCT+CGG + chr6_3:1970654-1970673 None:intergenic 40.0%
! TTAACTGCCGAAGTTTTCCT+CGG - chr6_3:1970654-1970673 Msa0933500:intron 40.0%
! AAAATACGTTTTTGCCCCCT+CGG + chr6_3:1969735-1969754 None:intergenic 40.0%
TGCTGTTGACACATTGCAAA+AGG + chr6_3:1969697-1969716 None:intergenic 40.0%
! TGCTTATATTTAGGACCGGA+GGG + chr6_3:1971005-1971024 None:intergenic 40.0%
! TTGCTTATATTTAGGACCGG+AGG + chr6_3:1971004-1971023 None:intergenic 40.0%
! TTGCTTATATTTAGGACCGG+AGG - chr6_3:1971004-1971023 Msa0933500:intron 40.0%
! TGCTTATATTTAGGACCGGA+GGG - chr6_3:1971005-1971024 Msa0933500:intron 40.0%
GACTTAATAAGTACTCCCTC+CGG + chr6_3:1971023-1971042 None:intergenic 40.0%
GGAATAGGGTCAAAGTCAAA+TGG - chr6_3:1971273-1971292 Msa0933500:CDS 40.0%
ACGTCGACAAGGCAATAATT+TGG + chr6_3:1971436-1971455 None:intergenic 40.0%
!!! CCAATTTTTTTGCATGCCAC+CGG + chr6_3:1971472-1971491 None:intergenic 40.0%
GTTGTAACTGTTGCTGGAAA+TGG + chr6_3:1972232-1972251 None:intergenic 40.0%
TGGAATGTTGTAACTGTTGC+TGG + chr6_3:1972238-1972257 None:intergenic 40.0%
!! CGTTGGTGATCAATTTGATC+TGG - chr6_3:1972272-1972291 Msa0933500:intron 40.0%
CACTCACACCATCAAATCTA+TGG - chr6_3:1972545-1972564 Msa0933500:intron 40.0%
!! TTCATCTCTTCTTTTGGGTG+AGG - chr6_3:1972590-1972609 Msa0933500:intron 40.0%
! TTGTTAGTTAGTTTGGTCCC+TGG - chr6_3:1972766-1972785 Msa0933500:intron 40.0%
ATGAACGGAAAACACATCCA+GGG + chr6_3:1972786-1972805 None:intergenic 40.0%
! GTGTTTTCCGTTCATCAGTT+TGG - chr6_3:1972791-1972810 Msa0933500:intron 40.0%
CAATCTACACCTTTCCTTCT+TGG - chr6_3:1972901-1972920 Msa0933500:CDS 40.0%
!!! CTGCTGGTTTTAAACCAAGA+AGG + chr6_3:1972918-1972937 None:intergenic 40.0%
GCTCATAAATGAGCAAGTGA+TGG - chr6_3:1973214-1973233 Msa0933500:intron 40.0%
GAAGAAACCACCCATAAAGT+AGG + chr6_3:1973296-1973315 None:intergenic 40.0%
TCTCTTCTACCTATAGTTGG+GGG - chr6_3:1973314-1973333 Msa0933500:intron 40.0%
ACATGTTCTCGTCTCAAAAC+AGG - chr6_3:1973672-1973691 Msa0933500:intron 40.0%
TTCTCGTCTCAAAACAGGAT+TGG - chr6_3:1973677-1973696 Msa0933500:intron 40.0%
CCCTCCGAAAATATAGCATA+TGG + chr6_3:1973919-1973938 None:intergenic 40.0%
!!! AGTCCTTGTTTTGCTTTCGT+GGG + chr6_3:1974095-1974114 None:intergenic 40.0%
!!! TAGTCCTTGTTTTGCTTTCG+TGG + chr6_3:1974096-1974115 None:intergenic 40.0%
!! AATCCTTGGCTTGCCTATAT+AGG + chr6_3:1974281-1974300 None:intergenic 40.0%
CCGGTTAAAATGAGCAACTA+TGG - chr6_3:1974572-1974591 Msa0933500:intron 40.0%
TGAGCAACTATGGACATAAC+CGG - chr6_3:1974582-1974601 Msa0933500:intron 40.0%
AAGTAGGGTTGCTTATGGAT+AGG + chr6_3:1974700-1974719 None:intergenic 40.0%
CATTGCACATGTGACAAGTA+GGG + chr6_3:1974715-1974734 None:intergenic 40.0%
TCATTGCACATGTGACAAGT+AGG + chr6_3:1974716-1974735 None:intergenic 40.0%
TTGGAGCTTAATGCATTTGG+TGG - chr6_3:1975422-1975441 Msa0933500:intron 40.0%
! ATTTGGTGGCAGGTTTCATA+TGG - chr6_3:1975436-1975455 Msa0933500:intron 40.0%
! TTTGGTGGCAGGTTTCATAT+GGG - chr6_3:1975437-1975456 Msa0933500:intron 40.0%
CCATTAGAGAGACTTACCAA+GGG + chr6_3:1975575-1975594 None:intergenic 40.0%
ACCATTAGAGAGACTTACCA+AGG + chr6_3:1975576-1975595 None:intergenic 40.0%
TCTTGTATTCAAGGGCAAAG+AGG - chr6_3:1975817-1975836 Msa0933500:CDS 40.0%
AAAGAGAGAGAGATAGAGAG+AGG - chr6_3:1975897-1975916 Msa0933500:CDS 40.0%
AAGAGAGAGAGATAGAGAGA+GGG - chr6_3:1975898-1975917 Msa0933500:CDS 40.0%
CCATCAATGGTGAGTCTAAG+TGG + chr6_3:1969268-1969287 None:intergenic 45.0%
CCACTTAGACTCACCATTGA+TGG - chr6_3:1969265-1969284 Msa0933500:three_prime_UTR 45.0%
CTTGTTCAGTCTCTTCAGCT+TGG - chr6_3:1969439-1969458 Msa0933500:intron 45.0%
! CTGCAGCCGGTTTCATAATT+CGG + chr6_3:1970684-1970703 None:intergenic 45.0%
! CTGCAGCCGGTTTCATAATT+CGG - chr6_3:1970684-1970703 Msa0933500:intron 45.0%
TGACACATTGCAAAAGGCTG+TGG + chr6_3:1969703-1969722 None:intergenic 45.0%
GGTTAGCGTGAGTTAGATTC+TGG - chr6_3:1971241-1971260 Msa0933500:intron 45.0%
!! CGTGAGTTAGATTCTGGAGT+GGG - chr6_3:1971247-1971266 Msa0933500:intron 45.0%
!! AGTTAGATTCTGGAGTGGGA+AGG - chr6_3:1971251-1971270 Msa0933500:intron 45.0%
!! GTTAGATTCTGGAGTGGGAA+GGG - chr6_3:1971252-1971271 Msa0933500:intron 45.0%
CCGGTGGCATGCAAAAAAAT+TGG - chr6_3:1971469-1971488 Msa0933500:CDS 45.0%
CTAGACACCGCTAACATGTA+TGG + chr6_3:1971515-1971534 None:intergenic 45.0%
GTTTCCCAATGTATGAGCCA+CGG + chr6_3:1972484-1972503 None:intergenic 45.0%
!! GACGAACATTAGTCTTGGCA+AGG - chr6_3:1972509-1972528 Msa0933500:intron 45.0%
GATGAACGGAAAACACATCC+AGG + chr6_3:1972787-1972806 None:intergenic 45.0%
! TGACGGACCAAACTGATGAA+CGG + chr6_3:1972801-1972820 None:intergenic 45.0%
!! GGTTTCCCTAGTGGATTGAT+TGG - chr6_3:1972867-1972886 Msa0933500:intron 45.0%
AAACCAGCAGAGACAAACAG+AGG - chr6_3:1972928-1972947 Msa0933500:CDS 45.0%
AACCAGCAGAGACAAACAGA+GGG - chr6_3:1972929-1972948 Msa0933500:CDS 45.0%
TGGTTCCTAAATGTACGAGG+CGG + chr6_3:1972995-1973014 None:intergenic 45.0%
TGGCGTCATTCGATACATGT+AGG - chr6_3:1973157-1973176 Msa0933500:intron 45.0%
ACAGATGCCTACTTTATGGG+TGG - chr6_3:1973286-1973305 Msa0933500:intron 45.0%
GATTGGATTCAGCACTGCAA+TGG - chr6_3:1973694-1973713 Msa0933500:intron 45.0%
CCAACCTTACGAATCAATCG+CGG - chr6_3:1973720-1973739 Msa0933500:intron 45.0%
!! CATTCCGCGATTGATTCGTA+AGG + chr6_3:1973727-1973746 None:intergenic 45.0%
!!! GTCCTTGTTTTGCTTTCGTG+GGG + chr6_3:1974094-1974113 None:intergenic 45.0%
CTTCCTATATAGGCAAGCCA+AGG - chr6_3:1974275-1974294 Msa0933500:intron 45.0%
GCTCTCGAACATTCAATCCT+TGG + chr6_3:1974295-1974314 None:intergenic 45.0%
GAAGCAGAATGCAGCCAAAA+CGG + chr6_3:1974330-1974349 None:intergenic 45.0%
ATGTGAAAAACCTCACCTGC+TGG + chr6_3:1974361-1974380 None:intergenic 45.0%
GTGACAAGTAGGGTTGCTTA+TGG + chr6_3:1974705-1974724 None:intergenic 45.0%
! AGCTTAATGCATTTGGTGGC+AGG - chr6_3:1975426-1975445 Msa0933500:intron 45.0%
CCCTTGGTAAGTCTCTCTAA+TGG - chr6_3:1975572-1975591 Msa0933500:intron 45.0%
TGTGGTCCTAATTTGGTTGC+AGG - chr6_3:1975768-1975787 Msa0933500:CDS 45.0%
GCAGTTCCTGCAACCAAATT+AGG + chr6_3:1975777-1975796 None:intergenic 45.0%
GGAACTGCTATTGCACTTGT+TGG - chr6_3:1975789-1975808 Msa0933500:CDS 45.0%
TAAGCCAGTGCCAAAGACAA+AGG - chr6_3:1975842-1975861 Msa0933500:CDS 45.0%
!!! TTTTTTGTTGGGTGAGGGGT+TGG - chr6_3:1975976-1975995 Msa0933500:CDS 45.0%
!! GTAAAAAAAAAAAAAAAAAA+AGG + chr6_3:1969876-1969895 None:intergenic 5.0%
!! TAAAGAATTAAATTTAATTA+AGG + chr6_3:1970519-1970538 None:intergenic 5.0%
!! TAAAGAATTAAATTTAATTA+AGG - chr6_3:1970519-1970538 Msa0933500:intron 5.0%
!! TTTGTAAAAAAAAAAAAAAA+AGG - chr6_3:1970579-1970598 Msa0933500:intron 5.0%
!! ATTTAAATAAATAGTATATT+TGG - chr6_3:1975026-1975045 Msa0933500:intron 5.0%
!!! TTTATTTTTATTTTTTTTGT+TGG - chr6_3:1975964-1975983 Msa0933500:CDS 5.0%
!!! TTATTTTTATTTTTTTTGTT+GGG - chr6_3:1975965-1975984 Msa0933500:CDS 5.0%
! TGCTGCTTCTTCTGTTCCTG+AGG - chr6_3:1969381-1969400 Msa0933500:CDS 50.0%
CTGAGGCACAGAGTGATGAA+GGG - chr6_3:1969398-1969417 Msa0933500:CDS 50.0%
ATTCGGCAGTTAACTGCCGA+GGG + chr6_3:1970701-1970720 None:intergenic 50.0%
AATTCGGCAGTTAACTGCCG+AGG + chr6_3:1970700-1970719 None:intergenic 50.0%
ACTTCGGCAGTTAACTACCG+AGG - chr6_3:1969807-1969826 Msa0933500:intron 50.0%
ACTTCGGCAGTTAACTACCG+AGG + chr6_3:1969807-1969826 None:intergenic 50.0%
AATTCGGCAGTTAACTGCCG+AGG - chr6_3:1970700-1970719 Msa0933500:intron 50.0%
ATTCGGCAGTTAACTGCCGA+GGG - chr6_3:1970701-1970720 Msa0933500:intron 50.0%
! GCGTGAGTTAGATTCTGGAG+TGG - chr6_3:1971246-1971265 Msa0933500:intron 50.0%
!! TTCTGGAGTGGGAAGGGAAT+AGG - chr6_3:1971258-1971277 Msa0933500:intron 50.0%
! TCTGGAGTGGGAAGGGAATA+GGG - chr6_3:1971259-1971278 Msa0933500:intron 50.0%
ACGACACTGAAACGTCGACA+AGG + chr6_3:1971447-1971466 None:intergenic 50.0%
AATGTATGAGCCACGGCAAG+TGG + chr6_3:1972477-1972496 None:intergenic 50.0%
ACTTGCCGTGGCTCATACAT+TGG - chr6_3:1972476-1972495 Msa0933500:intron 50.0%
CTTGCCGTGGCTCATACATT+GGG - chr6_3:1972477-1972496 Msa0933500:intron 50.0%
TTCCCTCTGTTTGTCTCTGC+TGG + chr6_3:1972934-1972953 None:intergenic 50.0%
TGACACCGCCTCGTACATTT+AGG - chr6_3:1972987-1973006 Msa0933500:CDS 50.0%
TCTACCTATAGTTGGGGGAG+TGG - chr6_3:1973319-1973338 Msa0933500:intron 50.0%
AATGCCACTCCCCCAACTAT+AGG + chr6_3:1973326-1973345 None:intergenic 50.0%
TATAGTTGGGGGAGTGGCAT+TGG - chr6_3:1973325-1973344 Msa0933500:intron 50.0%
!! CCGCGATTGATTCGTAAGGT+TGG + chr6_3:1973723-1973742 None:intergenic 50.0%
ACTGCAGATTGCAGGTACGA+AGG + chr6_3:1973955-1973974 None:intergenic 50.0%
GTCCCCACGAAAGCAAAACA+AGG - chr6_3:1974089-1974108 Msa0933500:intron 50.0%
! GTGCCGACCTCCATGATAAA+AGG + chr6_3:1975173-1975192 None:intergenic 50.0%
TCACCTGTGACACACTCAGT+CGG - chr6_3:1975475-1975494 Msa0933500:intron 50.0%
TTTCCGACTGAGTGTGTCAC+AGG + chr6_3:1975481-1975500 None:intergenic 50.0%
TGACAGGTGAGACAGGAGTT+TGG + chr6_3:1975549-1975568 None:intergenic 50.0%
!! GACTTACCAAGGGCATTGAC+AGG + chr6_3:1975565-1975584 None:intergenic 50.0%
GCTTCCTTTGTCTTTGGCAC+TGG + chr6_3:1975849-1975868 None:intergenic 50.0%
CCTTCATCACTCTGTGCCTC+AGG + chr6_3:1969400-1969419 None:intergenic 55.0%
CCTGAGGCACAGAGTGATGA+AGG - chr6_3:1969397-1969416 Msa0933500:CDS 55.0%
TTCGGCAGTTAACTGCCGAG+GGG + chr6_3:1969842-1969861 None:intergenic 55.0%
CCTCGGTAGTTAACTGCAGC+CGG + chr6_3:1970671-1970690 None:intergenic 55.0%
ACTTCGGCAGTTAACTGCCG+AGG - chr6_3:1969840-1969859 Msa0933500:intron 55.0%
ACTTCGGCAGTTAACTGCCG+AGG + chr6_3:1969840-1969859 None:intergenic 55.0%
CCTCGGTAGTTAACTGCAGC+CGG - chr6_3:1970671-1970690 Msa0933500:intron 55.0%
TTCGGCAGTTAACTGCCGAG+GGG - chr6_3:1969842-1969861 Msa0933500:intron 55.0%
CGACGTTTCAGTGTCGTGTC+CGG - chr6_3:1971450-1971469 Msa0933500:intron 55.0%
CCAACGAAGCAAAGCCGAAC+TGG + chr6_3:1972258-1972277 None:intergenic 55.0%
CCAGTTCGGCTTTGCTTCGT+TGG - chr6_3:1972255-1972274 Msa0933500:intron 55.0%
TATGAGCCACGGCAAGTGGA+AGG + chr6_3:1972473-1972492 None:intergenic 55.0%
CTGCTTCCATGCATACCAGC+AGG - chr6_3:1974343-1974362 Msa0933500:intron 55.0%
TCCATGCATACCAGCAGGTG+AGG - chr6_3:1974348-1974367 Msa0933500:intron 55.0%
ACCTCACCTGCTGGTATGCA+TGG + chr6_3:1974352-1974371 None:intergenic 55.0%
!! AGGGCATTGACAGGTGAGAC+AGG + chr6_3:1975556-1975575 None:intergenic 55.0%
GTCTCACCTGTCAATGCCCT+TGG - chr6_3:1975556-1975575 Msa0933500:intron 55.0%
TCGGCAGTTAACTGCCGAGG+GGG + chr6_3:1969843-1969862 None:intergenic 60.0%
CCGGCTGCAGTTAACTACCG+AGG - chr6_3:1969781-1969800 Msa0933500:intron 60.0%
CCGGCTGCAGTTAACTACCG+AGG + chr6_3:1969781-1969800 None:intergenic 60.0%
TCGGCAGTTAACTGCCGAGG+GGG - chr6_3:1969843-1969862 Msa0933500:intron 60.0%
CGTTTCAGTGTCGTGTCCGG+TGG - chr6_3:1971453-1971472 Msa0933500:intron 60.0%
GGCAATCCTTCCACTTGCCG+TGG - chr6_3:1972464-1972483 Msa0933500:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1969069 1976163 1969069 ID=Msa0933500;Name=Msa0933500
chr6_3 mRNA 1969069 1976163 1969069 ID=Msa0933500-mRNA-1;Parent=Msa0933500;Name=Msa0933500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=34|1|1|1|1|1|9|291|424
chr6_3 exon 1969069 1969442 1969069 ID=Msa0933500-mRNA-1:exon:791;Parent=Msa0933500-mRNA-1
chr6_3 exon 1969655 1969784 1969655 ID=Msa0933500-mRNA-1:exon:790;Parent=Msa0933500-mRNA-1
chr6_3 exon 1970868 1970945 1970868 ID=Msa0933500-mRNA-1:exon:789;Parent=Msa0933500-mRNA-1
chr6_3 exon 1971260 1971379 1971260 ID=Msa0933500-mRNA-1:exon:788;Parent=Msa0933500-mRNA-1
chr6_3 exon 1971454 1971538 1971454 ID=Msa0933500-mRNA-1:exon:787;Parent=Msa0933500-mRNA-1
chr6_3 exon 1971857 1971942 1971857 ID=Msa0933500-mRNA-1:exon:786;Parent=Msa0933500-mRNA-1
chr6_3 exon 1972621 1972773 1972621 ID=Msa0933500-mRNA-1:exon:785;Parent=Msa0933500-mRNA-1
chr6_3 exon 1972896 1973018 1972896 ID=Msa0933500-mRNA-1:exon:784;Parent=Msa0933500-mRNA-1
chr6_3 exon 1975713 1976163 1975713 ID=Msa0933500-mRNA-1:exon:783;Parent=Msa0933500-mRNA-1
chr6_3 five_prime_UTR 1976130 1976163 1976130 ID=Msa0933500-mRNA-1:five_prime_utr;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1975713 1976129 1975713 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1972896 1973018 1972896 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1972621 1972773 1972621 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1971857 1971942 1971857 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1971454 1971538 1971454 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1971260 1971379 1971260 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1970868 1970945 1970868 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1969655 1969784 1969655 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 CDS 1969360 1969442 1969360 ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3 three_prime_UTR 1969069 1969359 1969069 ID=Msa0933500-mRNA-1:three_prime_utr;Parent=Msa0933500-mRNA-1
Gene Sequence

>Msa0933500

ATGCAACGAACAACTATGTCTCCTTATTTTCTCTCATCAAACCTCAACATGCATAATCTCTATGTCTCACCTTCTTCTTCAACCTTACACCTTTCAACCCACATAACCAAACCAAAATTTCACCCTTTTCAAAATACTCATTCTCACAATTTTTCTTCTTCACCACTTAGACTCACCATTGATGGATTTTCATGCCCATCTTCTTCTTTCTTCCAAACTGTTAGAAAGTCTTCACCTTTCTTCATTTCAAATCCAAAAATGGATTCTTTTAGAGTCTTTGCTGCTTCTTCTGTTCCTGAGGCACAGAGTGATGAAGGGAAACAACAAACTTCTGGGCTTGTTCAGTCTCTTCAGCTTGGTTTCATGTTTGCTACTTGGTATCTCTTGAATATTTACTTCAACATTTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAACATTCCAGTTCGGCTTTGCTTCGTTGGTGATCAATTTGATCTGGACATTGAATCTTCATCCTAGACCAAAAATTAGTAGATCACAGCTTACGGCAATCCTTCCACTTGCCGTGGCTCATACATTGGGAAACCTTTTGACGAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACCATCAAATCTATGGAACCTTTCTTCACTGTTGTTCTTTCATCTCTTCTTTTGGGTGAGATGCCTACTTTATGGGTGGTTTCTTCTCTTCTACCTATAGTTGGGGGAGTGGCATTGGCATCGATGACTGAAGTCTCTTTCAATTGGATTGGATTCAGCACTGCAATGGCATCCAACCTTACGAATCAATCGCGGAATGTTTTGAGCAAAAAACTAATGGCTAATGAAGAGGAAGCTTTGGACAATATCAATCTCTACTCAGTTATAACCATCATTTCATTTTTCCTGTTGGTACCATATGCTATATTTTCGGAGGGTGTCAAGTTTACTCCTTCGTACCTGCAATCTGCAGCAAGCCAAGGATTGAATGTTCGAGAGCTATGTATAAGATCCGTTTTGGCTGCATTCTGCTTCCATGCATACCAGCAGGTTTCATATGGGATATTAGAGAAAGTGTCACCTGTGACACACTCAGTCGGAAATTGCGTTAAGCGTGTCGTTGTCATCGTCTCTTCAGTTATCTTTTTCCAAACTCCTGTCTCACCTGTCAATGCCCTTGGAACTGCTATTGCACTTGTTGGAGTTTTCTTGTATTCAAGGGCAAAGAGGATTAAGCCAGTGCCAAAGACAAAGGAAGCATAA

Protein sequence

>Msa0933500

MQRTTMSPYFLSSNLNMHNLYVSPSSSTLHLSTHITKPKFHPFQNTHSHNFSSSPLRLTIDGFSCPSSSFFQTVRKSSPFFISNPKMDSFRVFAASSVPEAQSDEGKQQTSGLVQSLQLGFMFATWYLLNIYFNIYNKQVLKVYPFPATVTTFQFGFASLVINLIWTLNLHPRPKISRSQLTAILPLAVAHTLGNLLTNISLGKVAVSFTHTIKSMEPFFTVVLSSLLLGEMPTLWVVSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMANEEEALDNINLYSVITIISFFLLVPYAIFSEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNALGTAIALVGVFLYSRAKRIKPVPKTKEA*