AlfalfaGEDB | Msa0933500

M. sativa cultivar zhongmu-4 / Msa0933500

KEGG: K15283
GO: GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039
PFAM: PF03151.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933500	XP_003618180.2	97.170	424	11	1	1	424	1	423	0.0	832

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933500	sp\|Q84QU8\|PPT2_ORYSJ	65.000	340	116	1	82	421	70	406	9.97e-158	454

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0933500	0.814056	1.870651e-51	-8.615850e-47
Msa0002690	Msa0933500	0.882984	6.584051e-71	-8.615850e-47
Msa0002700	Msa0933500	0.885649	6.778919e-72	-8.615850e-47
Msa0003370	Msa0933500	0.837971	3.794213e-57	-8.615850e-47
Msa0004180	Msa0933500	0.848328	6.574003e-60	-8.615850e-47
Msa0005500	Msa0933500	0.868390	6.764994e-66	-8.615850e-47
Msa0007810	Msa0933500	0.804219	2.399272e-49	-8.615850e-47
Msa0011060	Msa0933500	0.809759	1.614114e-50	-8.615850e-47
Msa0011100	Msa0933500	0.801269	9.751262e-49	-8.615850e-47
Msa0011410	Msa0933500	0.839574	1.460328e-57	-8.615850e-47

Showing 1 to 10 of 1,313 entries

Previous1 2 3 4 5…132Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933500	MtrunA17_Chr6g0449891	97.375	419	10	1	6	424	1	418	0.0	823
Msa0933500	MtrunA17_Chr4g0058971	72.787	305	80	1	113	417	79	380	9.35e-162	460
Msa0933500	MtrunA17_Chr3g0117501	69.725	327	95	2	95	421	87	409	1.71e-157	451
Msa0933500	MtrunA17_Chr2g0288011	46.358	302	154	4	115	414	100	395	4.88e-76	242
Msa0933500	MtrunA17_Chr3g0097931	43.548	310	171	3	105	414	96	401	6.52e-74	236
Msa0933500	MtrunA17_Chr4g0074541	39.416	411	208	8	13	414	14	392	2.29e-73	235
Msa0933500	MtrunA17_Chr2g0291851	45.253	316	165	6	100	411	81	392	1.44e-72	233
Msa0933500	MtrunA17_Chr4g0046561	41.776	304	160	7	116	413	96	388	1.34e-67	220
Msa0933500	MtrunA17_Chr5g0419001	36.888	347	199	7	91	424	65	404	4.33e-62	206
Msa0933500	MtrunA17_Chr4g0008071	29.630	297	194	7	125	414	19	307	8.63e-24	100

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933500	AT3G01550.1	67.847	339	104	4	84	420	46	381	1.82e-153	439
Msa0933500	AT5G33320.1	59.024	410	142	8	14	421	22	407	8.57e-151	434
Msa0933500	AT3G01550.2	66.667	339	103	5	84	420	46	376	1.12e-146	422
Msa0933500	AT5G17630.1	42.188	384	211	8	35	416	32	406	3.63e-82	259
Msa0933500	AT5G54800.1	39.529	382	220	5	38	413	11	387	8.79e-76	241
Msa0933500	AT1G61800.1	39.231	390	199	9	36	414	26	388	7.27e-74	236
Msa0933500	AT1G61800.2	38.718	390	201	9	36	414	26	388	4.42e-72	232
Msa0933500	AT5G46110.4	38.700	323	185	8	96	413	83	397	3.00e-66	217
Msa0933500	AT5G46110.1	38.700	323	185	8	96	413	83	397	3.29e-66	217
Msa0933500	AT5G46110.2	40.550	291	162	7	126	413	2	284	6.40e-65	210

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Find 82 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAATGGCTAATGAAG+AGG	0.569321	6_3:-1971453	Msa0933500:intron
AAAGAGAGAGAGATAGAGAG+AGG	0.505465	6_3:-1969313	Msa0933500:three_prime_UTR
AAGAGAGAGAGATAGAGAGA+GGG	0.555665	6_3:-1969312	Msa0933500:three_prime_UTR
AAGGGAAACAACAAACTTCT+GGG	0.458763	6_3:-1975794	Msa0933500:CDS
AATGTATGAGCCACGGCAAG+TGG	0.534798	6_3:+1972736	None:intergenic
AATTACATACTGCAGATTGC+AGG	0.454301	6_3:+1971250	None:intergenic
AATTATGCTTCCTTTGTCTT+TGG	0.270898	6_3:+1969358	None:intergenic
ACAGATGCCTACTTTATGGG+TGG	0.618256	6_3:-1971924	Msa0933500:intron
ACAGTTACAACATTCCAGTT+CGG	0.514414	6_3:-1972969	Msa0933500:CDS
ACCTCACCTGCTGGTATGCA+TGG	0.479845	6_3:+1970861	None:intergenic

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGTTTGATGAGAGAAAATA+AGG	+	chr6_3:1969127-1969146	None:intergenic	30.0%
TTTGGAAGAAAGAAGAAGAT+GGG	+	chr6_3:1969300-1969319	None:intergenic	30.0%
CTTCAACATTTACAACAAAC+AGG	-	chr6_3:1969498-1969517	Msa0933500:intron	30.0%
TTATTCATAATTACTCCCTC+CGG	-	chr6_3:1970872-1970891	Msa0933500:CDS	30.0%
AAATGTAATTAGAGTCGTGT+TGG	+	chr6_3:1971398-1971417	None:intergenic	30.0%
AAGGCAATAATTTGGAAAGA+TGG	+	chr6_3:1971428-1971447	None:intergenic	30.0%
TCACTAAGGATATGGAATAA+TGG	-	chr6_3:1971654-1971673	Msa0933500:intron	30.0%
ACCAAAAATTAGTAGATCAC+AGG	-	chr6_3:1972315-1972334	Msa0933500:intron	30.0%
ACAAGACATTCACCAAATAT+TGG	+	chr6_3:1972372-1972391	None:intergenic	30.0%
CTAATTAAAGGACACATTCA+TGG	+	chr6_3:1972725-1972744	None:intergenic	30.0%

Showing 1 to 10 of 401 entries

Previous1 2 3 4 5…41Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	1969069	1976163	1969069	ID=Msa0933500;Name=Msa0933500
chr6_3	mRNA	1969069	1976163	1969069	ID=Msa0933500-mRNA-1;Parent=Msa0933500;Name=Msa0933500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=34\|1\|1\|1\|1\|1\|9\|291\|424
chr6_3	exon	1969069	1969442	1969069	ID=Msa0933500-mRNA-1:exon:791;Parent=Msa0933500-mRNA-1
chr6_3	exon	1969655	1969784	1969655	ID=Msa0933500-mRNA-1:exon:790;Parent=Msa0933500-mRNA-1
chr6_3	exon	1970868	1970945	1970868	ID=Msa0933500-mRNA-1:exon:789;Parent=Msa0933500-mRNA-1
chr6_3	exon	1971260	1971379	1971260	ID=Msa0933500-mRNA-1:exon:788;Parent=Msa0933500-mRNA-1
chr6_3	exon	1971454	1971538	1971454	ID=Msa0933500-mRNA-1:exon:787;Parent=Msa0933500-mRNA-1
chr6_3	exon	1971857	1971942	1971857	ID=Msa0933500-mRNA-1:exon:786;Parent=Msa0933500-mRNA-1
chr6_3	exon	1972621	1972773	1972621	ID=Msa0933500-mRNA-1:exon:785;Parent=Msa0933500-mRNA-1
chr6_3	exon	1972896	1973018	1972896	ID=Msa0933500-mRNA-1:exon:784;Parent=Msa0933500-mRNA-1
chr6_3	exon	1975713	1976163	1975713	ID=Msa0933500-mRNA-1:exon:783;Parent=Msa0933500-mRNA-1
chr6_3	five_prime_UTR	1976130	1976163	1976130	ID=Msa0933500-mRNA-1:five_prime_utr;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1975713	1976129	1975713	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1972896	1973018	1972896	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1972621	1972773	1972621	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1971857	1971942	1971857	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1971454	1971538	1971454	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1971260	1971379	1971260	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1970868	1970945	1970868	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1969655	1969784	1969655	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	CDS	1969360	1969442	1969360	ID=Msa0933500-mRNA-1:cds;Parent=Msa0933500-mRNA-1
chr6_3	three_prime_UTR	1969069	1969359	1969069	ID=Msa0933500-mRNA-1:three_prime_utr;Parent=Msa0933500-mRNA-1

Gene Sequence

>Msa0933500

ATGCAACGAACAACTATGTCTCCTTATTTTCTCTCATCAAACCTCAACATGCATAATCTCTATGTCTCACCTTCTTCTTCAACCTTACACCTTTCAACCCACATAACCAAACCAAAATTTCACCCTTTTCAAAATACTCATTCTCACAATTTTTCTTCTTCACCACTTAGACTCACCATTGATGGATTTTCATGCCCATCTTCTTCTTTCTTCCAAACTGTTAGAAAGTCTTCACCTTTCTTCATTTCAAATCCAAAAATGGATTCTTTTAGAGTCTTTGCTGCTTCTTCTGTTCCTGAGGCACAGAGTGATGAAGGGAAACAACAAACTTCTGGGCTTGTTCAGTCTCTTCAGCTTGGTTTCATGTTTGCTACTTGGTATCTCTTGAATATTTACTTCAACATTTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAACATTCCAGTTCGGCTTTGCTTCGTTGGTGATCAATTTGATCTGGACATTGAATCTTCATCCTAGACCAAAAATTAGTAGATCACAGCTTACGGCAATCCTTCCACTTGCCGTGGCTCATACATTGGGAAACCTTTTGACGAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACCATCAAATCTATGGAACCTTTCTTCACTGTTGTTCTTTCATCTCTTCTTTTGGGTGAGATGCCTACTTTATGGGTGGTTTCTTCTCTTCTACCTATAGTTGGGGGAGTGGCATTGGCATCGATGACTGAAGTCTCTTTCAATTGGATTGGATTCAGCACTGCAATGGCATCCAACCTTACGAATCAATCGCGGAATGTTTTGAGCAAAAAACTAATGGCTAATGAAGAGGAAGCTTTGGACAATATCAATCTCTACTCAGTTATAACCATCATTTCATTTTTCCTGTTGGTACCATATGCTATATTTTCGGAGGGTGTCAAGTTTACTCCTTCGTACCTGCAATCTGCAGCAAGCCAAGGATTGAATGTTCGAGAGCTATGTATAAGATCCGTTTTGGCTGCATTCTGCTTCCATGCATACCAGCAGGTTTCATATGGGATATTAGAGAAAGTGTCACCTGTGACACACTCAGTCGGAAATTGCGTTAAGCGTGTCGTTGTCATCGTCTCTTCAGTTATCTTTTTCCAAACTCCTGTCTCACCTGTCAATGCCCTTGGAACTGCTATTGCACTTGTTGGAGTTTTCTTGTATTCAAGGGCAAAGAGGATTAAGCCAGTGCCAAAGACAAAGGAAGCATAA

Protein sequence

>Msa0933500

MQRTTMSPYFLSSNLNMHNLYVSPSSSTLHLSTHITKPKFHPFQNTHSHNFSSSPLRLTIDGFSCPSSSFFQTVRKSSPFFISNPKMDSFRVFAASSVPEAQSDEGKQQTSGLVQSLQLGFMFATWYLLNIYFNIYNKQVLKVYPFPATVTTFQFGFASLVINLIWTLNLHPRPKISRSQLTAILPLAVAHTLGNLLTNISLGKVAVSFTHTIKSMEPFFTVVLSSLLLGEMPTLWVVSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMANEEEALDNINLYSVITIISFFLLVPYAIFSEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNALGTAIALVGVFLYSRAKRIKPVPKTKEA*