AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0983040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983040 MtrunA17_Chr5g0393541 94.700 283 6 3 1 278 1 279 0.0 509
Msa0983040 MtrunA17_Chr5g0393481 68.929 280 41 5 3 276 7 246 5.25e-97 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983040 AT4G34150.1 49.817 273 103 7 2 273 3 242 5.44e-61 193

Find 125 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCACGAAGGCCTTCAATT+AGG 0.223666 6_4:+24718596 None:intergenic
CTCACGAAGGCCTTCAATTA+GGG 0.298122 6_4:+24718597 None:intergenic
ATGAACTTCTCTTGAAATAC+AGG 0.329350 6_4:+24718625 None:intergenic
GAGATATAAGAAACAAAATC+TGG 0.335243 6_4:+24717370 None:intergenic
AAGAATTACTTACCAGCGTT+TGG 0.337334 6_4:+24717566 None:intergenic
GTTTCTTATATCTCTACATT+AGG 0.348243 6_4:-24717361 Msa0983040:three_prime_UTR
ATATGATGGGACTGCTGTAT+AGG 0.351177 6_4:+24717925 None:intergenic
GTATTCACCCATCCATGTTA+TGG 0.353006 6_4:-24717091 Msa0983040:three_prime_UTR
TTCTCTGTGTATGACCAAAT+TGG 0.355431 6_4:+24717133 None:intergenic
GGGTAAGGTGGTGGTGGTTG+TGG 0.356727 6_4:+24717827 None:intergenic
TGGCCACTTCAAACTAAAAC+TGG 0.363854 6_4:-24718373 Msa0983040:CDS
GGACTGTTTAGTATCCAATT+TGG 0.365334 6_4:-24717147 Msa0983040:three_prime_UTR
GGCCAGCCTCTCGAGGTTAC+TGG 0.386852 6_4:-24718968 Msa0983040:intron
GGCGGATAAGAGTGGGGAGG+AGG 0.387349 6_4:+24717638 None:intergenic
GGACTGCTGTATAGGGAGTA+TGG 0.403544 6_4:+24717933 None:intergenic
GTGAGATCAATGTTGTCGTT+TGG 0.408755 6_4:-24718579 Msa0983040:CDS
TATGATGGGACTGCTGTATA+GGG 0.411289 6_4:+24717926 None:intergenic
GTAGCATATGTGTGTCAATA+TGG 0.415498 6_4:+24717449 None:intergenic
TTCATACTTCCCCTAATTGA+AGG 0.420730 6_4:-24718607 Msa0983040:CDS
GATGATGAGGGTGGTGGATA+GGG 0.427578 6_4:+24717728 None:intergenic
ATTCACTTTGGCATTGGCAC+TGG 0.431726 6_4:+24718080 None:intergenic
TTTGGCATTGGCACTGGCAT+TGG 0.438190 6_4:+24718086 None:intergenic
CTGGTGATTCACTTTGGCAT+TGG 0.439416 6_4:+24718074 None:intergenic
GCATGTTCTTGTTCGGAACT+TGG 0.446926 6_4:+24718771 None:intergenic
TGTGGGTAGTAGGAAGGAAC+AGG 0.447068 6_4:+24717899 None:intergenic
CGAAATTGAAAGACACTGAA+TGG 0.450034 6_4:-24718837 Msa0983040:CDS
GTGTGGTTGTTGTGGGTAGT+AGG 0.452219 6_4:+24717889 None:intergenic
AACCAGTGCATGTTCTTGTT+CGG 0.457517 6_4:+24718764 None:intergenic
TCACTCACGATGATGATGTC+TGG 0.459098 6_4:-24718998 Msa0983040:exon
TGATGATGAGGGTGGTGGAT+AGG 0.463785 6_4:+24717727 None:intergenic
GATGACACTGATTGAGGGTA+TGG 0.470349 6_4:+24717752 None:intergenic
AATTAGAGTGTGGTTGTTGT+GGG 0.481190 6_4:+24717882 None:intergenic
TACCAGTAACCTCGAGAGGC+TGG 0.487326 6_4:+24718966 None:intergenic
CTGAAGATGGCGGATAAGAG+TGG 0.491172 6_4:+24717630 None:intergenic
TAATTAGAGTGTGGTTGTTG+TGG 0.492816 6_4:+24717881 None:intergenic
ATAACTAAGATGTGGATTAG+TGG 0.493686 6_4:-24717233 Msa0983040:three_prime_UTR
TATGGATATGTTGAGGATGG+TGG 0.494303 6_4:+24717770 None:intergenic
ACAAAAGCACGGTGGTTCCT+TGG 0.495307 6_4:+24717418 None:intergenic
GAAGGAACAGGATTATATGA+TGG 0.495410 6_4:+24717911 None:intergenic
TGGGGAGGAGGGTACGGTGA+TGG 0.496971 6_4:+24717650 None:intergenic
CCTGCAGGTGGAGGGTATGA+TGG 0.497690 6_4:+24717596 None:intergenic
TAAGAGTGGGGAGGAGGGTA+CGG 0.498100 6_4:+24717644 None:intergenic
GGAGTATGGCTTGAGGAGCC+TGG 0.500219 6_4:+24717947 None:intergenic
TAAGCAACAGCAGGTGTTGT+TGG 0.507242 6_4:+24717851 None:intergenic
TAGGGAGATGACACTGATTG+AGG 0.507262 6_4:+24717746 None:intergenic
CACTCACTCCATAACATGGA+TGG 0.509142 6_4:+24717083 None:intergenic
TAGGGAGATGGCACTGAAGG+AGG 0.510794 6_4:+24717695 None:intergenic
CACTCACGATGATGATGTCT+GGG 0.514047 6_4:-24718997 Msa0983040:exon
TACACAGAGAATGACAAACT+TGG 0.514496 6_4:-24717121 Msa0983040:three_prime_UTR
GATGGCACTGAAGGAGGGTA+TGG 0.515857 6_4:+24717701 None:intergenic
GGTTACCTGGTGATTCACTT+TGG 0.517974 6_4:+24718068 None:intergenic
GGAGGATAACCTGCAGGTGG+AGG 0.519441 6_4:+24717587 None:intergenic
ATGATGATGTCTGGGATTCA+AGG 0.520106 6_4:-24718989 Msa0983040:CDS
GTGTGTCAATATGGCGGTGG+AGG 0.520887 6_4:+24717458 None:intergenic
GATGATGAAGTTGGTGGATA+GGG 0.524032 6_4:+24717677 None:intergenic
TTACACAAAGTTCTCTCTCA+AGG 0.524703 6_4:-24718412 Msa0983040:CDS
CCATCATACCCTCCACCTGC+AGG 0.528050 6_4:-24717596 Msa0983040:CDS
AATTACTTACCAGCGTTTGG+AGG 0.530399 6_4:+24717569 None:intergenic
AGGGAGATGACACTGATTGA+GGG 0.533173 6_4:+24717747 None:intergenic
TGATGATGAAGTTGGTGGAT+AGG 0.533342 6_4:+24717676 None:intergenic
GGATAGGGAGATGGCACTGA+AGG 0.535955 6_4:+24717692 None:intergenic
GGTGGAGGGTATGATGGTGG+TGG 0.541763 6_4:+24717602 None:intergenic
CACTTCAAACTAAAACTGGC+AGG 0.546655 6_4:-24718369 Msa0983040:intron
GGTGATGATGATGAGGGTGG+TGG 0.549858 6_4:+24717722 None:intergenic
TGAAGATGGCGGATAAGAGT+GGG 0.557216 6_4:+24717631 None:intergenic
GCAGCAGGGTAAGGTGGTGG+TGG 0.559747 6_4:+24717821 None:intergenic
GAGGATGGTGGATAAGAAGA+TGG 0.563718 6_4:+24717782 None:intergenic
TTATGTGAATGTGAAGCAGC+AGG 0.565883 6_4:+24717806 None:intergenic
AAGGAACAGGATTATATGAT+GGG 0.567570 6_4:+24717912 None:intergenic
AGGGTATGGTGATGATGATG+AGG 0.569188 6_4:+24717715 None:intergenic
GATGGTGATGATGATGAAGT+TGG 0.569892 6_4:+24717668 None:intergenic
GAATGTGAAGCAGCAGGGTA+AGG 0.573678 6_4:+24717812 None:intergenic
GGTGATGATGATGAAGTTGG+TGG 0.574618 6_4:+24717671 None:intergenic
GCAGGTGGAGGGTATGATGG+TGG 0.574871 6_4:+24717599 None:intergenic
AGATATAAGAAACAAAATCT+GGG 0.579766 6_4:+24717371 None:intergenic
GGTTGTTGTGGGTAGTAGGA+AGG 0.584669 6_4:+24717893 None:intergenic
TTCCGAACAAGAACATGCAC+TGG 0.585438 6_4:-24718766 Msa0983040:intron
AGGGAGATGGCACTGAAGGA+GGG 0.585482 6_4:+24717696 None:intergenic
AGCGTATTCGATGCAAACGT+AGG 0.585596 6_4:+24718798 None:intergenic
ATTCTATTATAACTAAGATG+TGG 0.585900 6_4:-24717241 Msa0983040:three_prime_UTR
CATCCATGTTATGGAGTGAG+TGG 0.586586 6_4:-24717082 Msa0983040:three_prime_UTR
GGGTATGGATATGTTGAGGA+TGG 0.588607 6_4:+24717767 None:intergenic
GCGTTTGGAGGATAACCTGC+AGG 0.588898 6_4:+24717581 None:intergenic
GATAAAATCATCGAAGGTGA+CGG 0.590599 6_4:+24718546 None:intergenic
GAGGATAACCTGCAGGTGGA+GGG 0.591147 6_4:+24717588 None:intergenic
GCGGATAAGAGTGGGGAGGA+GGG 0.591531 6_4:+24717639 None:intergenic
TCACGAAGGCCTTCAATTAG+GGG 0.593261 6_4:+24718598 None:intergenic
TGTTCTTGTTCGGAACTTGG+TGG 0.595740 6_4:+24718774 None:intergenic
AGCCCACTCACTCCATAACA+TGG 0.598623 6_4:+24717079 None:intergenic
ACACAGAGAATGACAAACTT+GGG 0.599928 6_4:-24717120 Msa0983040:three_prime_UTR
CAACAGCAGGTGTTGTTGGA+TGG 0.604074 6_4:+24717855 None:intergenic
TGAACTTCTCTTGAAATACA+GGG 0.608951 6_4:+24718626 None:intergenic
GCGTATTCGATGCAAACGTA+GGG 0.609000 6_4:+24718799 None:intergenic
CAATGCCAAAGTGAATCACC+AGG 0.609446 6_4:-24718073 Msa0983040:intron
ATATGCTACTTTCGCTACCA+AGG 0.613661 6_4:-24717435 Msa0983040:three_prime_UTR
ATCCATGTTATGGAGTGAGT+GGG 0.616219 6_4:-24717081 Msa0983040:three_prime_UTR
ACTCACTCCATAACATGGAT+GGG 0.618097 6_4:+24717084 None:intergenic
GATGGCGGATAAGAGTGGGG+AGG 0.623756 6_4:+24717635 None:intergenic
GAAGCAGCAGGGTAAGGTGG+TGG 0.624794 6_4:+24717818 None:intergenic
GCTAATATATTGCAGAAACC+AGG 0.627769 6_4:-24717965 Msa0983040:intron
GATTCAAGGCCAGCCTCTCG+AGG 0.627817 6_4:-24718975 Msa0983040:CDS
GAAGTTGGTGGATAGGGAGA+TGG 0.631529 6_4:+24717683 None:intergenic
GGGTATGGTGATGATGATGA+GGG 0.634043 6_4:+24717716 None:intergenic
ATCTTACCAGTAACCTCGAG+AGG 0.634279 6_4:+24718962 None:intergenic
GGTTGTGGATAAGCAACAGC+AGG 0.634892 6_4:+24717842 None:intergenic
GGTGGTGGATAAGCTGAAGA+TGG 0.637025 6_4:+24717617 None:intergenic
GGATGGTGATAATTAGAGTG+TGG 0.637190 6_4:+24717872 None:intergenic
TATGGTGATGATGATGAGGG+TGG 0.640824 6_4:+24717719 None:intergenic
TGTGTCAATATGGCGGTGGA+GGG 0.643568 6_4:+24717459 None:intergenic
ACTAATCATGTACAAAAGCA+CGG 0.644803 6_4:+24717407 None:intergenic
TATGTGAATGTGAAGCAGCA+GGG 0.647936 6_4:+24717807 None:intergenic
TGTCTTTCTGACAGACACGC+AGG 0.649615 6_4:-24718135 Msa0983040:intron
GCAGGTTATCCTCCAAACGC+TGG 0.651932 6_4:-24717578 Msa0983040:intron
TGTGAAGCAGCAGGGTAAGG+TGG 0.654828 6_4:+24717815 None:intergenic
TTTGGAGGATAACCTGCAGG+TGG 0.658511 6_4:+24717584 None:intergenic
TATGTGTGTCAATATGGCGG+TGG 0.670842 6_4:+24717455 None:intergenic
GGTGCCGATAAAATCATCGA+AGG 0.673086 6_4:+24718540 None:intergenic
TTGAGGGTATGGATATGTTG+AGG 0.674935 6_4:+24717763 None:intergenic
TCTCAATTACATTATACATG+CGG 0.684133 6_4:-24717168 Msa0983040:three_prime_UTR
TGTATAGGGAGTATGGCTTG+AGG 0.692075 6_4:+24717940 None:intergenic
GAAGATGGCGGATAAGAGTG+GGG 0.705455 6_4:+24717632 None:intergenic
GGTGGATAAGCTGAAGATGG+CGG 0.729568 6_4:+24717620 None:intergenic
CGACAACATTGATCTCACGA+AGG 0.730875 6_4:+24718584 None:intergenic
GCATATGTGTGTCAATATGG+CGG 0.756030 6_4:+24717452 None:intergenic
AATCATGTACAAAAGCACGG+TGG 0.829684 6_4:+24717410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATATATATAATAACAAT+TGG - chr6_4:24718097-24718116 Msa0983040:CDS 10.0%
!! TACATATATATAATAACAAT+TGG - chr6_4:24718097-24718116 Msa0983040:CDS 10.0%
!! ATAAATAGTAATGAAAATGT+AGG + chr6_4:24718070-24718089 None:intergenic 15.0%
!!! ACTATCTATCATTATTTTTT+TGG - chr6_4:24718837-24718856 Msa0983040:CDS 15.0%
!!! CTATCTATCATTATTTTTTT+GGG - chr6_4:24718838-24718857 Msa0983040:CDS 15.0%
!! ATAAATAGTAATGAAAATGT+AGG + chr6_4:24718070-24718089 None:intergenic 15.0%
!!! ACTATCTATCATTATTTTTT+TGG - chr6_4:24718837-24718856 Msa0983040:CDS 15.0%
!!! CTATCTATCATTATTTTTTT+GGG - chr6_4:24718838-24718857 Msa0983040:CDS 15.0%
!!! TATATTCTCTGTCTTATTTT+AGG - chr6_4:24717673-24717692 Msa0983040:CDS 20.0%
!!! ATATTCTCTGTCTTATTTTA+GGG - chr6_4:24717674-24717693 Msa0983040:CDS 20.0%
!! AGATATAAGAAACAAAATCT+GGG + chr6_4:24718746-24718765 None:intergenic 20.0%
!! ATTCTATTATAACTAAGATG+TGG - chr6_4:24718873-24718892 Msa0983040:intron 20.0%
!!! TATATTCTCTGTCTTATTTT+AGG - chr6_4:24717673-24717692 Msa0983040:CDS 20.0%
!!! ATATTCTCTGTCTTATTTTA+GGG - chr6_4:24717674-24717693 Msa0983040:CDS 20.0%
!! AGATATAAGAAACAAAATCT+GGG + chr6_4:24718746-24718765 None:intergenic 20.0%
!! ATTCTATTATAACTAAGATG+TGG - chr6_4:24718873-24718892 Msa0983040:intron 20.0%
!!! GTTGATTTTAATCTTTGACT+TGG - chr6_4:24717182-24717201 Msa0983040:three_prime_UTR 25.0%
! AAACGACTACAATAAATAAC+AGG + chr6_4:24717251-24717270 None:intergenic 25.0%
!! TGAATTGAATAGTTACTTTC+CGG + chr6_4:24717598-24717617 None:intergenic 25.0%
! TCTCATCTATAATTTCGATA+TGG + chr6_4:24717797-24717816 None:intergenic 25.0%
! TGATTCTTAATAAGTGTGTT+TGG - chr6_4:24718123-24718142 Msa0983040:CDS 25.0%
! GATTCTTAATAAGTGTGTTT+GGG - chr6_4:24718124-24718143 Msa0983040:CDS 25.0%
! AGTAGATGTGAAAATTGAAA+TGG + chr6_4:24718587-24718606 None:intergenic 25.0%
! GAGATATAAGAAACAAAATC+TGG + chr6_4:24718747-24718766 None:intergenic 25.0%
! GTTTCTTATATCTCTACATT+AGG - chr6_4:24718753-24718772 Msa0983040:intron 25.0%
! TCTCAATTACATTATACATG+CGG - chr6_4:24718946-24718965 Msa0983040:intron 25.0%
!!! GTTGATTTTAATCTTTGACT+TGG - chr6_4:24717182-24717201 Msa0983040:three_prime_UTR 25.0%
! AAACGACTACAATAAATAAC+AGG + chr6_4:24717251-24717270 None:intergenic 25.0%
!! TGAATTGAATAGTTACTTTC+CGG + chr6_4:24717598-24717617 None:intergenic 25.0%
! TCTCATCTATAATTTCGATA+TGG + chr6_4:24717797-24717816 None:intergenic 25.0%
! TGATTCTTAATAAGTGTGTT+TGG - chr6_4:24718123-24718142 Msa0983040:CDS 25.0%
! GATTCTTAATAAGTGTGTTT+GGG - chr6_4:24718124-24718143 Msa0983040:CDS 25.0%
! AGTAGATGTGAAAATTGAAA+TGG + chr6_4:24718587-24718606 None:intergenic 25.0%
! GAGATATAAGAAACAAAATC+TGG + chr6_4:24718747-24718766 None:intergenic 25.0%
! GTTTCTTATATCTCTACATT+AGG - chr6_4:24718753-24718772 Msa0983040:intron 25.0%
! TCTCAATTACATTATACATG+CGG - chr6_4:24718946-24718965 Msa0983040:intron 25.0%
ACAATAAATAACAGGAAGGA+AGG + chr6_4:24717243-24717262 None:intergenic 30.0%
GACTACAATAAATAACAGGA+AGG + chr6_4:24717247-24717266 None:intergenic 30.0%
AAGAGTCAACGATTCAAATA+GGG + chr6_4:24717441-24717460 None:intergenic 30.0%
AAAGAGTCAACGATTCAAAT+AGG + chr6_4:24717442-24717461 None:intergenic 30.0%
TGAACTTCTCTTGAAATACA+GGG + chr6_4:24717491-24717510 None:intergenic 30.0%
ATGAACTTCTCTTGAAATAC+AGG + chr6_4:24717492-24717511 None:intergenic 30.0%
TCGAAATTATAGATGAGACA+TGG - chr6_4:24717799-24717818 Msa0983040:CDS 30.0%
!! GATTGATACAGTTGTTTCTT+AGG - chr6_4:24717824-24717843 Msa0983040:CDS 30.0%
AGACTTAATCAGTTAGCATT+AGG - chr6_4:24717897-24717916 Msa0983040:CDS 30.0%
TAATGAAAATGTAGGTTACC+TGG + chr6_4:24718062-24718081 None:intergenic 30.0%
AAGGAACAGGATTATATGAT+GGG + chr6_4:24718205-24718224 None:intergenic 30.0%
GATGTGAAAATTGAAATGGT+TGG + chr6_4:24718583-24718602 None:intergenic 30.0%
ACTAATCATGTACAAAAGCA+CGG + chr6_4:24718710-24718729 None:intergenic 30.0%
!! ATAACTAAGATGTGGATTAG+TGG - chr6_4:24718881-24718900 Msa0983040:intron 30.0%
ACAATAAATAACAGGAAGGA+AGG + chr6_4:24717243-24717262 None:intergenic 30.0%
GACTACAATAAATAACAGGA+AGG + chr6_4:24717247-24717266 None:intergenic 30.0%
AAGAGTCAACGATTCAAATA+GGG + chr6_4:24717441-24717460 None:intergenic 30.0%
AAAGAGTCAACGATTCAAAT+AGG + chr6_4:24717442-24717461 None:intergenic 30.0%
TGAACTTCTCTTGAAATACA+GGG + chr6_4:24717491-24717510 None:intergenic 30.0%
ATGAACTTCTCTTGAAATAC+AGG + chr6_4:24717492-24717511 None:intergenic 30.0%
TCGAAATTATAGATGAGACA+TGG - chr6_4:24717799-24717818 Msa0983040:CDS 30.0%
!! GATTGATACAGTTGTTTCTT+AGG - chr6_4:24717824-24717843 Msa0983040:CDS 30.0%
AGACTTAATCAGTTAGCATT+AGG - chr6_4:24717897-24717916 Msa0983040:CDS 30.0%
TAATGAAAATGTAGGTTACC+TGG + chr6_4:24718062-24718081 None:intergenic 30.0%
AAGGAACAGGATTATATGAT+GGG + chr6_4:24718205-24718224 None:intergenic 30.0%
GATGTGAAAATTGAAATGGT+TGG + chr6_4:24718583-24718602 None:intergenic 30.0%
ACTAATCATGTACAAAAGCA+CGG + chr6_4:24718710-24718729 None:intergenic 30.0%
!! ATAACTAAGATGTGGATTAG+TGG - chr6_4:24718881-24718900 Msa0983040:intron 30.0%
CGAAATTGAAAGACACTGAA+TGG - chr6_4:24717277-24717296 Msa0983040:three_prime_UTR 35.0%
CTCTTTCTTTCAATTCCAGA+CGG - chr6_4:24717456-24717475 Msa0983040:exon 35.0%
TTCATACTTCCCCTAATTGA+AGG - chr6_4:24717507-24717526 Msa0983040:intron 35.0%
GATAAAATCATCGAAGGTGA+CGG + chr6_4:24717571-24717590 None:intergenic 35.0%
! GTCACCTTCGATGATTTTAT+CGG - chr6_4:24717570-24717589 Msa0983040:intron 35.0%
TTACACAAAGTTCTCTCTCA+AGG - chr6_4:24717702-24717721 Msa0983040:CDS 35.0%
TTTCGATATGGATGAGACAA+AGG + chr6_4:24717785-24717804 None:intergenic 35.0%
GCTAATATATTGCAGAAACC+AGG - chr6_4:24718149-24718168 Msa0983040:intron 35.0%
GAAGGAACAGGATTATATGA+TGG + chr6_4:24718206-24718225 None:intergenic 35.0%
AATTAGAGTGTGGTTGTTGT+GGG + chr6_4:24718235-24718254 None:intergenic 35.0%
TAATTAGAGTGTGGTTGTTG+TGG + chr6_4:24718236-24718255 None:intergenic 35.0%
AAGAATTACTTACCAGCGTT+TGG + chr6_4:24718551-24718570 None:intergenic 35.0%
GAAAAAGGATGTGATTGGAA+AGG + chr6_4:24718626-24718645 None:intergenic 35.0%
! TTCCAATCACATCCTTTTTC+AGG - chr6_4:24718626-24718645 Msa0983040:CDS 35.0%
ATCCTGAAAAAGGATGTGAT+TGG + chr6_4:24718631-24718650 None:intergenic 35.0%
GTAGCATATGTGTGTCAATA+TGG + chr6_4:24718668-24718687 None:intergenic 35.0%
GGACTGTTTAGTATCCAATT+TGG - chr6_4:24718967-24718986 Msa0983040:intron 35.0%
TTCTCTGTGTATGACCAAAT+TGG + chr6_4:24718984-24719003 None:intergenic 35.0%
TACACAGAGAATGACAAACT+TGG - chr6_4:24718993-24719012 Msa0983040:exon 35.0%
ACACAGAGAATGACAAACTT+GGG - chr6_4:24718994-24719013 Msa0983040:exon 35.0%
CGAAATTGAAAGACACTGAA+TGG - chr6_4:24717277-24717296 Msa0983040:three_prime_UTR 35.0%
CTCTTTCTTTCAATTCCAGA+CGG - chr6_4:24717456-24717475 Msa0983040:exon 35.0%
TTCATACTTCCCCTAATTGA+AGG - chr6_4:24717507-24717526 Msa0983040:intron 35.0%
GATAAAATCATCGAAGGTGA+CGG + chr6_4:24717571-24717590 None:intergenic 35.0%
! GTCACCTTCGATGATTTTAT+CGG - chr6_4:24717570-24717589 Msa0983040:intron 35.0%
TTACACAAAGTTCTCTCTCA+AGG - chr6_4:24717702-24717721 Msa0983040:CDS 35.0%
TTTCGATATGGATGAGACAA+AGG + chr6_4:24717785-24717804 None:intergenic 35.0%
GCTAATATATTGCAGAAACC+AGG - chr6_4:24718149-24718168 Msa0983040:intron 35.0%
GAAGGAACAGGATTATATGA+TGG + chr6_4:24718206-24718225 None:intergenic 35.0%
AATTAGAGTGTGGTTGTTGT+GGG + chr6_4:24718235-24718254 None:intergenic 35.0%
TAATTAGAGTGTGGTTGTTG+TGG + chr6_4:24718236-24718255 None:intergenic 35.0%
AAGAATTACTTACCAGCGTT+TGG + chr6_4:24718551-24718570 None:intergenic 35.0%
GAAAAAGGATGTGATTGGAA+AGG + chr6_4:24718626-24718645 None:intergenic 35.0%
! TTCCAATCACATCCTTTTTC+AGG - chr6_4:24718626-24718645 Msa0983040:CDS 35.0%
ATCCTGAAAAAGGATGTGAT+TGG + chr6_4:24718631-24718650 None:intergenic 35.0%
GTAGCATATGTGTGTCAATA+TGG + chr6_4:24718668-24718687 None:intergenic 35.0%
GGACTGTTTAGTATCCAATT+TGG - chr6_4:24718967-24718986 Msa0983040:intron 35.0%
TTCTCTGTGTATGACCAAAT+TGG + chr6_4:24718984-24719003 None:intergenic 35.0%
TACACAGAGAATGACAAACT+TGG - chr6_4:24718993-24719012 Msa0983040:exon 35.0%
ACACAGAGAATGACAAACTT+GGG - chr6_4:24718994-24719013 Msa0983040:exon 35.0%
! ATGATGATGTCTGGGATTCA+AGG - chr6_4:24717125-24717144 Msa0983040:three_prime_UTR 40.0%
AACCAGTGCATGTTCTTGTT+CGG + chr6_4:24717353-24717372 None:intergenic 40.0%
TTTCTTTCAATTCCAGACGG+CGG - chr6_4:24717459-24717478 Msa0983040:exon 40.0%
GTGAGATCAATGTTGTCGTT+TGG - chr6_4:24717535-24717554 Msa0983040:intron 40.0%
! TTCGATGATTTTATCGGCAC+CGG - chr6_4:24717576-24717595 Msa0983040:intron 40.0%
!! AAGGTTTTGACGACTCTTCT+TGG - chr6_4:24717721-24717740 Msa0983040:CDS 40.0%
TGGCCACTTCAAACTAAAAC+TGG - chr6_4:24717741-24717760 Msa0983040:CDS 40.0%
!!! CTGCCAGTTTTAGTTTGAAG+TGG + chr6_4:24717747-24717766 None:intergenic 40.0%
CACTTCAAACTAAAACTGGC+AGG - chr6_4:24717745-24717764 Msa0983040:CDS 40.0%
GATGAGACAAAGGAATACTG+AGG + chr6_4:24717775-24717794 None:intergenic 40.0%
! TATGATGGGACTGCTGTATA+GGG + chr6_4:24718191-24718210 None:intergenic 40.0%
! ATATGATGGGACTGCTGTAT+AGG + chr6_4:24718192-24718211 None:intergenic 40.0%
GGATGGTGATAATTAGAGTG+TGG + chr6_4:24718245-24718264 None:intergenic 40.0%
TATGTGAATGTGAAGCAGCA+GGG + chr6_4:24718310-24718329 None:intergenic 40.0%
TTATGTGAATGTGAAGCAGC+AGG + chr6_4:24718311-24718330 None:intergenic 40.0%
TATGGATATGTTGAGGATGG+TGG + chr6_4:24718347-24718366 None:intergenic 40.0%
! TTGAGGGTATGGATATGTTG+AGG + chr6_4:24718354-24718373 None:intergenic 40.0%
!! GATGATGAAGTTGGTGGATA+GGG + chr6_4:24718440-24718459 None:intergenic 40.0%
!! TGATGATGAAGTTGGTGGAT+AGG + chr6_4:24718441-24718460 None:intergenic 40.0%
! GATGGTGATGATGATGAAGT+TGG + chr6_4:24718449-24718468 None:intergenic 40.0%
AATTACTTACCAGCGTTTGG+AGG + chr6_4:24718548-24718567 None:intergenic 40.0%
GCATATGTGTGTCAATATGG+CGG + chr6_4:24718665-24718684 None:intergenic 40.0%
!! ATATGCTACTTTCGCTACCA+AGG - chr6_4:24718679-24718698 Msa0983040:intron 40.0%
! AATCATGTACAAAAGCACGG+TGG + chr6_4:24718707-24718726 None:intergenic 40.0%
GTATTCACCCATCCATGTTA+TGG - chr6_4:24719023-24719042 Msa0983040:five_prime_UTR 40.0%
ACTCACTCCATAACATGGAT+GGG + chr6_4:24719033-24719052 None:intergenic 40.0%
ATCCATGTTATGGAGTGAGT+GGG - chr6_4:24719033-24719052 Msa0983040:five_prime_UTR 40.0%
! ATGATGATGTCTGGGATTCA+AGG - chr6_4:24717125-24717144 Msa0983040:three_prime_UTR 40.0%
AACCAGTGCATGTTCTTGTT+CGG + chr6_4:24717353-24717372 None:intergenic 40.0%
TTTCTTTCAATTCCAGACGG+CGG - chr6_4:24717459-24717478 Msa0983040:exon 40.0%
GTGAGATCAATGTTGTCGTT+TGG - chr6_4:24717535-24717554 Msa0983040:intron 40.0%
! TTCGATGATTTTATCGGCAC+CGG - chr6_4:24717576-24717595 Msa0983040:intron 40.0%
!! AAGGTTTTGACGACTCTTCT+TGG - chr6_4:24717721-24717740 Msa0983040:CDS 40.0%
TGGCCACTTCAAACTAAAAC+TGG - chr6_4:24717741-24717760 Msa0983040:CDS 40.0%
!!! CTGCCAGTTTTAGTTTGAAG+TGG + chr6_4:24717747-24717766 None:intergenic 40.0%
CACTTCAAACTAAAACTGGC+AGG - chr6_4:24717745-24717764 Msa0983040:CDS 40.0%
GATGAGACAAAGGAATACTG+AGG + chr6_4:24717775-24717794 None:intergenic 40.0%
! TATGATGGGACTGCTGTATA+GGG + chr6_4:24718191-24718210 None:intergenic 40.0%
! ATATGATGGGACTGCTGTAT+AGG + chr6_4:24718192-24718211 None:intergenic 40.0%
GGATGGTGATAATTAGAGTG+TGG + chr6_4:24718245-24718264 None:intergenic 40.0%
TATGTGAATGTGAAGCAGCA+GGG + chr6_4:24718310-24718329 None:intergenic 40.0%
TTATGTGAATGTGAAGCAGC+AGG + chr6_4:24718311-24718330 None:intergenic 40.0%
TATGGATATGTTGAGGATGG+TGG + chr6_4:24718347-24718366 None:intergenic 40.0%
! TTGAGGGTATGGATATGTTG+AGG + chr6_4:24718354-24718373 None:intergenic 40.0%
!! GATGATGAAGTTGGTGGATA+GGG + chr6_4:24718440-24718459 None:intergenic 40.0%
!! TGATGATGAAGTTGGTGGAT+AGG + chr6_4:24718441-24718460 None:intergenic 40.0%
! GATGGTGATGATGATGAAGT+TGG + chr6_4:24718449-24718468 None:intergenic 40.0%
AATTACTTACCAGCGTTTGG+AGG + chr6_4:24718548-24718567 None:intergenic 40.0%
GCATATGTGTGTCAATATGG+CGG + chr6_4:24718665-24718684 None:intergenic 40.0%
!! ATATGCTACTTTCGCTACCA+AGG - chr6_4:24718679-24718698 Msa0983040:intron 40.0%
! AATCATGTACAAAAGCACGG+TGG + chr6_4:24718707-24718726 None:intergenic 40.0%
GTATTCACCCATCCATGTTA+TGG - chr6_4:24719023-24719042 Msa0983040:five_prime_UTR 40.0%
ACTCACTCCATAACATGGAT+GGG + chr6_4:24719033-24719052 None:intergenic 40.0%
ATCCATGTTATGGAGTGAGT+GGG - chr6_4:24719033-24719052 Msa0983040:five_prime_UTR 40.0%
! TCACTCACGATGATGATGTC+TGG - chr6_4:24717116-24717135 Msa0983040:three_prime_UTR 45.0%
! CACTCACGATGATGATGTCT+GGG - chr6_4:24717117-24717136 Msa0983040:three_prime_UTR 45.0%
ATCTTACCAGTAACCTCGAG+AGG + chr6_4:24717155-24717174 None:intergenic 45.0%
GCGTATTCGATGCAAACGTA+GGG + chr6_4:24717318-24717337 None:intergenic 45.0%
AGCGTATTCGATGCAAACGT+AGG + chr6_4:24717319-24717338 None:intergenic 45.0%
TGTTCTTGTTCGGAACTTGG+TGG + chr6_4:24717343-24717362 None:intergenic 45.0%
GCATGTTCTTGTTCGGAACT+TGG + chr6_4:24717346-24717365 None:intergenic 45.0%
TTCCGAACAAGAACATGCAC+TGG - chr6_4:24717348-24717367 Msa0983040:three_prime_UTR 45.0%
TCACGAAGGCCTTCAATTAG+GGG + chr6_4:24717519-24717538 None:intergenic 45.0%
CTCACGAAGGCCTTCAATTA+GGG + chr6_4:24717520-24717539 None:intergenic 45.0%
TCTCACGAAGGCCTTCAATT+AGG + chr6_4:24717521-24717540 None:intergenic 45.0%
CGACAACATTGATCTCACGA+AGG + chr6_4:24717533-24717552 None:intergenic 45.0%
!! GGTGCCGATAAAATCATCGA+AGG + chr6_4:24717577-24717596 None:intergenic 45.0%
!! ATTCACTTTGGCATTGGCAC+TGG + chr6_4:24718037-24718056 None:intergenic 45.0%
CTGGTGATTCACTTTGGCAT+TGG + chr6_4:24718043-24718062 None:intergenic 45.0%
CAATGCCAAAGTGAATCACC+AGG - chr6_4:24718041-24718060 Msa0983040:intron 45.0%
GGTTACCTGGTGATTCACTT+TGG + chr6_4:24718049-24718068 None:intergenic 45.0%
! TGTATAGGGAGTATGGCTTG+AGG + chr6_4:24718177-24718196 None:intergenic 45.0%
! TAAGCAACAGCAGGTGTTGT+TGG + chr6_4:24718266-24718285 None:intergenic 45.0%
!! GAGGATGGTGGATAAGAAGA+TGG + chr6_4:24718335-24718354 None:intergenic 45.0%
GGGTATGGATATGTTGAGGA+TGG + chr6_4:24718350-24718369 None:intergenic 45.0%
! GATGACACTGATTGAGGGTA+TGG + chr6_4:24718365-24718384 None:intergenic 45.0%
! AGGGAGATGACACTGATTGA+GGG + chr6_4:24718370-24718389 None:intergenic 45.0%
! TAGGGAGATGACACTGATTG+AGG + chr6_4:24718371-24718390 None:intergenic 45.0%
! TATGGTGATGATGATGAGGG+TGG + chr6_4:24718398-24718417 None:intergenic 45.0%
! GGGTATGGTGATGATGATGA+GGG + chr6_4:24718401-24718420 None:intergenic 45.0%
! AGGGTATGGTGATGATGATG+AGG + chr6_4:24718402-24718421 None:intergenic 45.0%
! GGTGATGATGATGAAGTTGG+TGG + chr6_4:24718446-24718465 None:intergenic 45.0%
!! TGAAGATGGCGGATAAGAGT+GGG + chr6_4:24718486-24718505 None:intergenic 45.0%
GGAGGGTAGAATCCTGAAAA+AGG + chr6_4:24718641-24718660 None:intergenic 45.0%
TATGTGTGTCAATATGGCGG+TGG + chr6_4:24718662-24718681 None:intergenic 45.0%
CACTCACTCCATAACATGGA+TGG + chr6_4:24719034-24719053 None:intergenic 45.0%
CATCCATGTTATGGAGTGAG+TGG - chr6_4:24719032-24719051 Msa0983040:five_prime_UTR 45.0%
! TCACTCACGATGATGATGTC+TGG - chr6_4:24717116-24717135 Msa0983040:three_prime_UTR 45.0%
! CACTCACGATGATGATGTCT+GGG - chr6_4:24717117-24717136 Msa0983040:three_prime_UTR 45.0%
ATCTTACCAGTAACCTCGAG+AGG + chr6_4:24717155-24717174 None:intergenic 45.0%
GCGTATTCGATGCAAACGTA+GGG + chr6_4:24717318-24717337 None:intergenic 45.0%
AGCGTATTCGATGCAAACGT+AGG + chr6_4:24717319-24717338 None:intergenic 45.0%
TGTTCTTGTTCGGAACTTGG+TGG + chr6_4:24717343-24717362 None:intergenic 45.0%
GCATGTTCTTGTTCGGAACT+TGG + chr6_4:24717346-24717365 None:intergenic 45.0%
TTCCGAACAAGAACATGCAC+TGG - chr6_4:24717348-24717367 Msa0983040:three_prime_UTR 45.0%
TCACGAAGGCCTTCAATTAG+GGG + chr6_4:24717519-24717538 None:intergenic 45.0%
CTCACGAAGGCCTTCAATTA+GGG + chr6_4:24717520-24717539 None:intergenic 45.0%
TCTCACGAAGGCCTTCAATT+AGG + chr6_4:24717521-24717540 None:intergenic 45.0%
CGACAACATTGATCTCACGA+AGG + chr6_4:24717533-24717552 None:intergenic 45.0%
!! GGTGCCGATAAAATCATCGA+AGG + chr6_4:24717577-24717596 None:intergenic 45.0%
!! ATTCACTTTGGCATTGGCAC+TGG + chr6_4:24718037-24718056 None:intergenic 45.0%
CTGGTGATTCACTTTGGCAT+TGG + chr6_4:24718043-24718062 None:intergenic 45.0%
CAATGCCAAAGTGAATCACC+AGG - chr6_4:24718041-24718060 Msa0983040:intron 45.0%
GGTTACCTGGTGATTCACTT+TGG + chr6_4:24718049-24718068 None:intergenic 45.0%
! TGTATAGGGAGTATGGCTTG+AGG + chr6_4:24718177-24718196 None:intergenic 45.0%
! TAAGCAACAGCAGGTGTTGT+TGG + chr6_4:24718266-24718285 None:intergenic 45.0%
!! GAGGATGGTGGATAAGAAGA+TGG + chr6_4:24718335-24718354 None:intergenic 45.0%
GGGTATGGATATGTTGAGGA+TGG + chr6_4:24718350-24718369 None:intergenic 45.0%
! GATGACACTGATTGAGGGTA+TGG + chr6_4:24718365-24718384 None:intergenic 45.0%
! AGGGAGATGACACTGATTGA+GGG + chr6_4:24718370-24718389 None:intergenic 45.0%
! TAGGGAGATGACACTGATTG+AGG + chr6_4:24718371-24718390 None:intergenic 45.0%
! TATGGTGATGATGATGAGGG+TGG + chr6_4:24718398-24718417 None:intergenic 45.0%
! GGGTATGGTGATGATGATGA+GGG + chr6_4:24718401-24718420 None:intergenic 45.0%
! AGGGTATGGTGATGATGATG+AGG + chr6_4:24718402-24718421 None:intergenic 45.0%
! GGTGATGATGATGAAGTTGG+TGG + chr6_4:24718446-24718465 None:intergenic 45.0%
!! TGAAGATGGCGGATAAGAGT+GGG + chr6_4:24718486-24718505 None:intergenic 45.0%
GGAGGGTAGAATCCTGAAAA+AGG + chr6_4:24718641-24718660 None:intergenic 45.0%
TATGTGTGTCAATATGGCGG+TGG + chr6_4:24718662-24718681 None:intergenic 45.0%
CACTCACTCCATAACATGGA+TGG + chr6_4:24719034-24719053 None:intergenic 45.0%
CATCCATGTTATGGAGTGAG+TGG - chr6_4:24719032-24719051 Msa0983040:five_prime_UTR 45.0%
CGTGTCTGTCAGAAAGACAG+GGG + chr6_4:24717978-24717997 None:intergenic 50.0%
GCGTGTCTGTCAGAAAGACA+GGG + chr6_4:24717979-24717998 None:intergenic 50.0%
TGCGTGTCTGTCAGAAAGAC+AGG + chr6_4:24717980-24717999 None:intergenic 50.0%
TGTCTTTCTGACAGACACGC+AGG - chr6_4:24717979-24717998 Msa0983040:intron 50.0%
!! TTTGGCATTGGCACTGGCAT+TGG + chr6_4:24718031-24718050 None:intergenic 50.0%
GGACTGCTGTATAGGGAGTA+TGG + chr6_4:24718184-24718203 None:intergenic 50.0%
TGTGGGTAGTAGGAAGGAAC+AGG + chr6_4:24718218-24718237 None:intergenic 50.0%
GGTTGTTGTGGGTAGTAGGA+AGG + chr6_4:24718224-24718243 None:intergenic 50.0%
GTGTGGTTGTTGTGGGTAGT+AGG + chr6_4:24718228-24718247 None:intergenic 50.0%
!! CAACAGCAGGTGTTGTTGGA+TGG + chr6_4:24718262-24718281 None:intergenic 50.0%
GGTTGTGGATAAGCAACAGC+AGG + chr6_4:24718275-24718294 None:intergenic 50.0%
GAATGTGAAGCAGCAGGGTA+AGG + chr6_4:24718305-24718324 None:intergenic 50.0%
!! GATGATGAGGGTGGTGGATA+GGG + chr6_4:24718389-24718408 None:intergenic 50.0%
!! TGATGATGAGGGTGGTGGAT+AGG + chr6_4:24718390-24718409 None:intergenic 50.0%
!! GAAGTTGGTGGATAGGGAGA+TGG + chr6_4:24718434-24718453 None:intergenic 50.0%
!! GAAGATGGCGGATAAGAGTG+GGG + chr6_4:24718485-24718504 None:intergenic 50.0%
!! CTGAAGATGGCGGATAAGAG+TGG + chr6_4:24718487-24718506 None:intergenic 50.0%
GGTGGATAAGCTGAAGATGG+CGG + chr6_4:24718497-24718516 None:intergenic 50.0%
!! GGTGGTGGATAAGCTGAAGA+TGG + chr6_4:24718500-24718519 None:intergenic 50.0%
TTTGGAGGATAACCTGCAGG+TGG + chr6_4:24718533-24718552 None:intergenic 50.0%
TGTGTCAATATGGCGGTGGA+GGG + chr6_4:24718658-24718677 None:intergenic 50.0%
! ACAAAAGCACGGTGGTTCCT+TGG + chr6_4:24718699-24718718 None:intergenic 50.0%
AGCCCACTCACTCCATAACA+TGG + chr6_4:24719038-24719057 None:intergenic 50.0%
CGTGTCTGTCAGAAAGACAG+GGG + chr6_4:24717978-24717997 None:intergenic 50.0%
GCGTGTCTGTCAGAAAGACA+GGG + chr6_4:24717979-24717998 None:intergenic 50.0%
TGCGTGTCTGTCAGAAAGAC+AGG + chr6_4:24717980-24717999 None:intergenic 50.0%
TGTCTTTCTGACAGACACGC+AGG - chr6_4:24717979-24717998 Msa0983040:intron 50.0%
!! TTTGGCATTGGCACTGGCAT+TGG + chr6_4:24718031-24718050 None:intergenic 50.0%
GGACTGCTGTATAGGGAGTA+TGG + chr6_4:24718184-24718203 None:intergenic 50.0%
TGTGGGTAGTAGGAAGGAAC+AGG + chr6_4:24718218-24718237 None:intergenic 50.0%
GGTTGTTGTGGGTAGTAGGA+AGG + chr6_4:24718224-24718243 None:intergenic 50.0%
GTGTGGTTGTTGTGGGTAGT+AGG + chr6_4:24718228-24718247 None:intergenic 50.0%
!! CAACAGCAGGTGTTGTTGGA+TGG + chr6_4:24718262-24718281 None:intergenic 50.0%
GGTTGTGGATAAGCAACAGC+AGG + chr6_4:24718275-24718294 None:intergenic 50.0%
GAATGTGAAGCAGCAGGGTA+AGG + chr6_4:24718305-24718324 None:intergenic 50.0%
!! GATGATGAGGGTGGTGGATA+GGG + chr6_4:24718389-24718408 None:intergenic 50.0%
!! TGATGATGAGGGTGGTGGAT+AGG + chr6_4:24718390-24718409 None:intergenic 50.0%
!! GAAGTTGGTGGATAGGGAGA+TGG + chr6_4:24718434-24718453 None:intergenic 50.0%
!! GAAGATGGCGGATAAGAGTG+GGG + chr6_4:24718485-24718504 None:intergenic 50.0%
!! CTGAAGATGGCGGATAAGAG+TGG + chr6_4:24718487-24718506 None:intergenic 50.0%
GGTGGATAAGCTGAAGATGG+CGG + chr6_4:24718497-24718516 None:intergenic 50.0%
!! GGTGGTGGATAAGCTGAAGA+TGG + chr6_4:24718500-24718519 None:intergenic 50.0%
TTTGGAGGATAACCTGCAGG+TGG + chr6_4:24718533-24718552 None:intergenic 50.0%
TGTGTCAATATGGCGGTGGA+GGG + chr6_4:24718658-24718677 None:intergenic 50.0%
! ACAAAAGCACGGTGGTTCCT+TGG + chr6_4:24718699-24718718 None:intergenic 50.0%
AGCCCACTCACTCCATAACA+TGG + chr6_4:24719038-24719057 None:intergenic 50.0%
TACCAGTAACCTCGAGAGGC+TGG + chr6_4:24717151-24717170 None:intergenic 55.0%
!!! ACAGGGTTTTTTCCGCCGTC+TGG + chr6_4:24717474-24717493 None:intergenic 55.0%
TGTGAAGCAGCAGGGTAAGG+TGG + chr6_4:24718302-24718321 None:intergenic 55.0%
! GGTGATGATGATGAGGGTGG+TGG + chr6_4:24718395-24718414 None:intergenic 55.0%
! GATGGCACTGAAGGAGGGTA+TGG + chr6_4:24718416-24718435 None:intergenic 55.0%
! AGGGAGATGGCACTGAAGGA+GGG + chr6_4:24718421-24718440 None:intergenic 55.0%
! TAGGGAGATGGCACTGAAGG+AGG + chr6_4:24718422-24718441 None:intergenic 55.0%
! GGATAGGGAGATGGCACTGA+AGG + chr6_4:24718425-24718444 None:intergenic 55.0%
TAAGAGTGGGGAGGAGGGTA+CGG + chr6_4:24718473-24718492 None:intergenic 55.0%
GAGGATAACCTGCAGGTGGA+GGG + chr6_4:24718529-24718548 None:intergenic 55.0%
GCGTTTGGAGGATAACCTGC+AGG + chr6_4:24718536-24718555 None:intergenic 55.0%
GCAGGTTATCCTCCAAACGC+TGG - chr6_4:24718536-24718555 Msa0983040:CDS 55.0%
GTGTGTCAATATGGCGGTGG+AGG + chr6_4:24718659-24718678 None:intergenic 55.0%
TACCAGTAACCTCGAGAGGC+TGG + chr6_4:24717151-24717170 None:intergenic 55.0%
!!! ACAGGGTTTTTTCCGCCGTC+TGG + chr6_4:24717474-24717493 None:intergenic 55.0%
TGTGAAGCAGCAGGGTAAGG+TGG + chr6_4:24718302-24718321 None:intergenic 55.0%
! GGTGATGATGATGAGGGTGG+TGG + chr6_4:24718395-24718414 None:intergenic 55.0%
! GATGGCACTGAAGGAGGGTA+TGG + chr6_4:24718416-24718435 None:intergenic 55.0%
! AGGGAGATGGCACTGAAGGA+GGG + chr6_4:24718421-24718440 None:intergenic 55.0%
! TAGGGAGATGGCACTGAAGG+AGG + chr6_4:24718422-24718441 None:intergenic 55.0%
! GGATAGGGAGATGGCACTGA+AGG + chr6_4:24718425-24718444 None:intergenic 55.0%
TAAGAGTGGGGAGGAGGGTA+CGG + chr6_4:24718473-24718492 None:intergenic 55.0%
GAGGATAACCTGCAGGTGGA+GGG + chr6_4:24718529-24718548 None:intergenic 55.0%
GCGTTTGGAGGATAACCTGC+AGG + chr6_4:24718536-24718555 None:intergenic 55.0%
GCAGGTTATCCTCCAAACGC+TGG - chr6_4:24718536-24718555 Msa0983040:CDS 55.0%
GTGTGTCAATATGGCGGTGG+AGG + chr6_4:24718659-24718678 None:intergenic 55.0%
GATTCAAGGCCAGCCTCTCG+AGG - chr6_4:24717139-24717158 Msa0983040:three_prime_UTR 60.0%
GGAGTATGGCTTGAGGAGCC+TGG + chr6_4:24718170-24718189 None:intergenic 60.0%
!! GGGTAAGGTGGTGGTGGTTG+TGG + chr6_4:24718290-24718309 None:intergenic 60.0%
GAAGCAGCAGGGTAAGGTGG+TGG + chr6_4:24718299-24718318 None:intergenic 60.0%
GCGGATAAGAGTGGGGAGGA+GGG + chr6_4:24718478-24718497 None:intergenic 60.0%
!! GATGGCGGATAAGAGTGGGG+AGG + chr6_4:24718482-24718501 None:intergenic 60.0%
!! GGTGGAGGGTATGATGGTGG+TGG + chr6_4:24718515-24718534 None:intergenic 60.0%
! GCAGGTGGAGGGTATGATGG+TGG + chr6_4:24718518-24718537 None:intergenic 60.0%
! CCTGCAGGTGGAGGGTATGA+TGG + chr6_4:24718521-24718540 None:intergenic 60.0%
CCATCATACCCTCCACCTGC+AGG - chr6_4:24718518-24718537 Msa0983040:intron 60.0%
GGAGGATAACCTGCAGGTGG+AGG + chr6_4:24718530-24718549 None:intergenic 60.0%
GATTCAAGGCCAGCCTCTCG+AGG - chr6_4:24717139-24717158 Msa0983040:three_prime_UTR 60.0%
GGAGTATGGCTTGAGGAGCC+TGG + chr6_4:24718170-24718189 None:intergenic 60.0%
!! GGGTAAGGTGGTGGTGGTTG+TGG + chr6_4:24718290-24718309 None:intergenic 60.0%
GAAGCAGCAGGGTAAGGTGG+TGG + chr6_4:24718299-24718318 None:intergenic 60.0%
GCGGATAAGAGTGGGGAGGA+GGG + chr6_4:24718478-24718497 None:intergenic 60.0%
!! GATGGCGGATAAGAGTGGGG+AGG + chr6_4:24718482-24718501 None:intergenic 60.0%
!! GGTGGAGGGTATGATGGTGG+TGG + chr6_4:24718515-24718534 None:intergenic 60.0%
! GCAGGTGGAGGGTATGATGG+TGG + chr6_4:24718518-24718537 None:intergenic 60.0%
! CCTGCAGGTGGAGGGTATGA+TGG + chr6_4:24718521-24718540 None:intergenic 60.0%
CCATCATACCCTCCACCTGC+AGG - chr6_4:24718518-24718537 Msa0983040:intron 60.0%
GGAGGATAACCTGCAGGTGG+AGG + chr6_4:24718530-24718549 None:intergenic 60.0%
GGCCAGCCTCTCGAGGTTAC+TGG - chr6_4:24717146-24717165 Msa0983040:three_prime_UTR 65.0%
! GCAGCAGGGTAAGGTGGTGG+TGG + chr6_4:24718296-24718315 None:intergenic 65.0%
! TGGGGAGGAGGGTACGGTGA+TGG + chr6_4:24718467-24718486 None:intergenic 65.0%
GGCGGATAAGAGTGGGGAGG+AGG + chr6_4:24718479-24718498 None:intergenic 65.0%
GGCCAGCCTCTCGAGGTTAC+TGG - chr6_4:24717146-24717165 Msa0983040:three_prime_UTR 65.0%
! GCAGCAGGGTAAGGTGGTGG+TGG + chr6_4:24718296-24718315 None:intergenic 65.0%
! TGGGGAGGAGGGTACGGTGA+TGG + chr6_4:24718467-24718486 None:intergenic 65.0%
GGCGGATAAGAGTGGGGAGG+AGG + chr6_4:24718479-24718498 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 24717066 24719070 24717066 ID=Msa0983040;Name=Msa0983040
chr6_4 mRNA 24717066 24719070 24717066 ID=Msa0983040-mRNA-1;Parent=Msa0983040;Name=Msa0983040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=59|1|1|1|1|1|7|397|278
chr6_4 exon 24717066 24717488 24717066 ID=Msa0983040-mRNA-1:exon:7309;Parent=Msa0983040-mRNA-1
chr6_4 exon 24717579 24717972 24717579 ID=Msa0983040-mRNA-1:exon:7308;Parent=Msa0983040-mRNA-1
chr6_4 exon 24718074 24718143 24718074 ID=Msa0983040-mRNA-1:exon:7307;Parent=Msa0983040-mRNA-1
chr6_4 exon 24718370 24718441 24718370 ID=Msa0983040-mRNA-1:exon:7306;Parent=Msa0983040-mRNA-1
chr6_4 exon 24718535 24718661 24718535 ID=Msa0983040-mRNA-1:exon:7305;Parent=Msa0983040-mRNA-1
chr6_4 exon 24718767 24718871 24718767 ID=Msa0983040-mRNA-1:exon:7304;Parent=Msa0983040-mRNA-1
chr6_4 exon 24718969 24719070 24718969 ID=Msa0983040-mRNA-1:exon:7303;Parent=Msa0983040-mRNA-1
chr6_4 five_prime_UTR 24719012 24719070 24719012 ID=Msa0983040-mRNA-1:five_prime_utr;Parent=Msa0983040-mRNA-1
chr6_4 CDS 24718969 24719011 24718969 ID=Msa0983040-mRNA-1:cds;Parent=Msa0983040-mRNA-1
chr6_4 CDS 24718767 24718871 24718767 ID=Msa0983040-mRNA-1:cds;Parent=Msa0983040-mRNA-1
chr6_4 CDS 24718535 24718661 24718535 ID=Msa0983040-mRNA-1:cds;Parent=Msa0983040-mRNA-1
chr6_4 CDS 24718370 24718441 24718370 ID=Msa0983040-mRNA-1:cds;Parent=Msa0983040-mRNA-1
chr6_4 CDS 24718074 24718143 24718074 ID=Msa0983040-mRNA-1:cds;Parent=Msa0983040-mRNA-1
chr6_4 CDS 24717579 24717972 24717579 ID=Msa0983040-mRNA-1:cds;Parent=Msa0983040-mRNA-1
chr6_4 CDS 24717463 24717488 24717463 ID=Msa0983040-mRNA-1:cds;Parent=Msa0983040-mRNA-1
chr6_4 three_prime_UTR 24717066 24717462 24717066 ID=Msa0983040-mRNA-1:three_prime_utr;Parent=Msa0983040-mRNA-1
Gene Sequence

>Msa0983040

ATGATGATGTCTGGGATTCAAGGCCAGCCTCTCGAGGTTACTGTCGTTTCTTGCTCGAAATTGAAAGACACTGAATGGATTTCAAGACAAGATCCCTACGTTTGCATCGAATACGCTTCCACCAAGTTCCGAACAAGAACATGCACTGACGGCGGAAAAAACCCTGTATTTCAAGAGAAGTTCATACTTCCCCTAATTGAAGGCCTTCGTGAGATCAATGTTGTCGTTTGGAACAGCAATACCGTCACCTTCGATGATTTTATCGGCACCGGAAAGGTTCAATTACACAAAGTTCTCTCTCAAGGTTTTGACGACTCTTCTTGGCCACTTCAAACTAAAACTGGCAGACACGCAGGCGAAGTAAAACTCATACTGCATTATGCCAATGCCAGTGCCAATGCCAAAGTGAATCACCAGAAACCAGGCTCCTCAAGCCATACTCCCTATACAGCAGTCCCATCATATAATCCTGTTCCTTCCTACTACCCACAACAACCACACTCTAATTATCACCATCCAACAACACCTGCTGTTGCTTATCCACAACCACCACCACCTTACCCTGCTGCTTCACATTCACATAATCCATCTTCTTATCCACCATCCTCAACATATCCATACCCTCAATCAGTGTCATCTCCCTATCCACCACCCTCATCATCATCACCATACCCTCCTTCAGTGCCATCTCCCTATCCACCAACTTCATCATCATCACCATCACCGTACCCTCCTCCCCACTCTTATCCGCCATCTTCAGCTTATCCACCACCATCATACCCTCCACCTGCAGGTTATCCTCCAAACGCTGGATTCTACCCTCCACCGCCATATTGA
Protein sequence

>Msa0983040

MMMSGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCIEYASTKFRTRTCTDGGKNPVFQEKFILPLIEGLREINVVVWNSNTVTFDDFIGTGKVQLHKVLSQGFDDSSWPLQTKTGRHAGEVKLILHYANASANAKVNHQKPGSSSHTPYTAVPSYNPVPSYYPQQPHSNYHHPTTPAVAYPQPPPPYPAASHSHNPSSYPPSSTYPYPQSVSSPYPPPSSSSPYPPSVPSPYPPTSSSSPSPYPPPHSYPPSSAYPPPSYPPPAGYPPNAGFYPPPPY*