Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047810 | XP_013461190.1 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047810 | sp|Q9SJ85|Y2474_ARATH | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047810 | A0A072UZJ2 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0047810 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047810 | Msa0229850 | 0.854771 | 9.859702e-62 | -8.615850e-47 |
| Msa0047810 | Msa0513450 | 0.875697 | 2.512547e-68 | -8.615850e-47 |
| Msa0047810 | Msa0526620 | 0.946948 | 1.736726e-105 | -8.615850e-47 |
| Msa0047810 | Msa1101530 | 0.869532 | 2.886533e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047810 | MtrunA17_Chr3g0120891 | 97.956 | 587 | 6 | 1 | 1 | 587 | 1 | 581 | 0.0 | 1183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047810 | AT2G04740.1 | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Msa0047810 | AT2G04740.4 | 71.144 | 402 | 103 | 3 | 16 | 412 | 26 | 419 | 0.0 | 587 |
| Msa0047810 | AT2G04740.3 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
| Msa0047810 | AT2G04740.2 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
Find 137 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCTTGATCATTATTT+AGG | 0.129432 | 1_1:+80875519 | None:intergenic |
| ATAATTCATCTTTCCCTTCA+TGG | 0.209480 | 1_1:+80877285 | None:intergenic |
| TTGATGATTTACGTGATAAA+TGG | 0.228719 | 1_1:-80875493 | Msa0047810:CDS |
| TCGATGCTAGAATAACTTTA+TGG | 0.240325 | 1_1:+80877351 | None:intergenic |
| CCAATCACCGCTGTAATTTC+AGG | 0.266996 | 1_1:-80875314 | Msa0047810:CDS |
| GACTTAGACCCTTCCGATTT+CGG | 0.267048 | 1_1:-80880280 | Msa0047810:CDS |
| GGCAAATAATTCAAAATTAC+AGG | 0.300060 | 1_1:+80875637 | None:intergenic |
| TCCGGTGGATTTCAGTTTCC+TGG | 0.303043 | 1_1:-80879896 | Msa0047810:intron |
| CTTCAGGTGATGCCATTTCT+AGG | 0.304251 | 1_1:+80876446 | None:intergenic |
| TATGAGAATGGTCAAGATAA+TGG | 0.315888 | 1_1:-80877476 | Msa0047810:CDS |
| TTGCCGATACAAAAGAATTC+CGG | 0.318461 | 1_1:-80875619 | Msa0047810:CDS |
| ACAACTGTCCCGAGCATGCC+TGG | 0.328006 | 1_1:-80875548 | Msa0047810:CDS |
| AACCAATGGCAAAGCTCTTC+AGG | 0.332097 | 1_1:+80876430 | None:intergenic |
| GGCGAACAAACTGTAATTTC+AGG | 0.337080 | 1_1:-80875293 | Msa0047810:CDS |
| TGCTCCGAACACACGTTTGA+CGG | 0.338738 | 1_1:-80880055 | Msa0047810:CDS |
| TAGAGAGCAGATGCTAAGTT+AGG | 0.345187 | 1_1:-80875191 | Msa0047810:three_prime_UTR |
| CTTGGAAAACGTCGCCGTTT+GGG | 0.353575 | 1_1:+80880233 | None:intergenic |
| TTACTCTGCTCTTAATTTGA+AGG | 0.354172 | 1_1:-80880020 | Msa0047810:CDS |
| CTGAATAAAAGAAATGTATA+AGG | 0.355396 | 1_1:+80877747 | None:intergenic |
| TATGACCCTGTGAGCTTCAA+TGG | 0.355838 | 1_1:+80877877 | None:intergenic |
| ACATCAGCAAGATCATTTAG+AGG | 0.359931 | 1_1:+80877407 | None:intergenic |
| ATTTCCTTGATCATTATTTA+GGG | 0.362505 | 1_1:+80875520 | None:intergenic |
| GCAGGAAGCCTGTCTTCTTC+AGG | 0.365112 | 1_1:+80877542 | None:intergenic |
| TGTCCCGCCAATTCGCATTC+CGG | 0.366372 | 1_1:-80879914 | Msa0047810:CDS |
| CTGCTCTTAATTTGAAGGTT+AGG | 0.367208 | 1_1:-80880015 | Msa0047810:CDS |
| TGCCGATACAAAAGAATTCC+GGG | 0.375788 | 1_1:-80875618 | Msa0047810:CDS |
| CCTGAAATTACAGCGGTGAT+TGG | 0.383019 | 1_1:+80875314 | None:intergenic |
| GCTTGGAAAACGTCGCCGTT+TGG | 0.392528 | 1_1:+80880232 | None:intergenic |
| AGATAATGGAATTGATGAAT+TGG | 0.393017 | 1_1:-80877462 | Msa0047810:CDS |
| CAGGTACACCGATCGTTTGC+AGG | 0.393496 | 1_1:-80876646 | Msa0047810:CDS |
| AGAGATTGCTGTGGATGATA+TGG | 0.401698 | 1_1:-80877717 | Msa0047810:CDS |
| TCAAATTCCACTTATGAGAA+TGG | 0.404180 | 1_1:-80877488 | Msa0047810:CDS |
| ACGGTCGAGGTCGCCGGCGC+GGG | 0.409392 | 1_1:+80880207 | None:intergenic |
| ATCTTGACCATTCTCATAAG+TGG | 0.413032 | 1_1:+80877481 | None:intergenic |
| GGTCGCCGGCGCGGGAGGCT+TGG | 0.425592 | 1_1:+80880215 | None:intergenic |
| CAAGCGCCTAGAGATGCTTA+TGG | 0.430680 | 1_1:-80875414 | Msa0047810:CDS |
| TTGACTTTACCGCCACCATC+TGG | 0.432801 | 1_1:-80875587 | Msa0047810:CDS |
| TCAGCCACCGCACGCTTAAG+AGG | 0.432979 | 1_1:+80876484 | None:intergenic |
| GCAGGAAATAAATCCAGATC+AGG | 0.444091 | 1_1:-80876628 | Msa0047810:intron |
| TTGCTTGGAGTGCTTAAGTT+GGG | 0.445475 | 1_1:-80875168 | Msa0047810:three_prime_UTR |
| GGGGACTGATGTGCCGAAAT+CGG | 0.446957 | 1_1:+80880267 | None:intergenic |
| CTCTACTACGCTTGTCTCGC+CGG | 0.450922 | 1_1:-80880121 | Msa0047810:CDS |
| AAATCCACCGGAATGCGAAT+TGG | 0.454070 | 1_1:+80879907 | None:intergenic |
| CGTCAACGCACGTGACCAAT+GGG | 0.454729 | 1_1:-80880155 | Msa0047810:CDS |
| ACGTCAACGCACGTGACCAA+TGG | 0.460070 | 1_1:-80880156 | Msa0047810:CDS |
| CTCATAAGTGGAATTTGAAA+GGG | 0.462115 | 1_1:+80877493 | None:intergenic |
| AGGGAAGACCCAGGCATGCT+CGG | 0.478303 | 1_1:+80875539 | None:intergenic |
| GTTGCTTGGAGTGCTTAAGT+TGG | 0.479363 | 1_1:-80875169 | Msa0047810:three_prime_UTR |
| CTTGGTGCCACACCTAGAAA+TGG | 0.481090 | 1_1:-80876458 | Msa0047810:CDS |
| GTCACCGTCAAACGTGTGTT+CGG | 0.482387 | 1_1:+80880051 | None:intergenic |
| AGATGCTAAGTTAGGTTGCT+TGG | 0.482412 | 1_1:-80875183 | Msa0047810:three_prime_UTR |
| ACGGAGACGGTCGAGGTCGC+CGG | 0.484646 | 1_1:+80880201 | None:intergenic |
| CGTTAACGCCGCATTCAAGA+AGG | 0.487687 | 1_1:+80880176 | None:intergenic |
| AGCAAGACTCTCACGTATGA+AGG | 0.487920 | 1_1:-80877312 | Msa0047810:CDS |
| TCTCATAAGTGGAATTTGAA+AGG | 0.493040 | 1_1:+80877492 | None:intergenic |
| GAATTGATGAATTGGTATCT+AGG | 0.495038 | 1_1:-80877454 | Msa0047810:CDS |
| AACACACGTTTGACGGTGAC+CGG | 0.496734 | 1_1:-80880048 | Msa0047810:CDS |
| GCAGAGCATGAAAAGTCATC+AGG | 0.503518 | 1_1:-80875386 | Msa0047810:CDS |
| GCGTGCGGTGGCTGATGTCT+TGG | 0.504420 | 1_1:-80876476 | Msa0047810:CDS |
| AGGATTCTACGCAAGGCTGC+AGG | 0.504870 | 1_1:+80877524 | None:intergenic |
| TCTTCCCTAAATAATGATCA+AGG | 0.508410 | 1_1:-80875524 | Msa0047810:CDS |
| GCTCGTATGCTTCTCGAAAA+CGG | 0.515902 | 1_1:-80880085 | Msa0047810:CDS |
| CCCGCCAATTCGCATTCCGG+TGG | 0.516474 | 1_1:-80879911 | Msa0047810:CDS |
| GGGAAGACCCAGGCATGCTC+GGG | 0.516596 | 1_1:+80875540 | None:intergenic |
| CAACTGTCCCGAGCATGCCT+GGG | 0.516727 | 1_1:-80875547 | Msa0047810:CDS |
| CGTATGAAGGATTTCCATGA+AGG | 0.522102 | 1_1:-80877299 | Msa0047810:CDS |
| ATGACCCTGTGAGCTTCAAT+GGG | 0.523451 | 1_1:+80877878 | None:intergenic |
| TAATTCAAAATTACAGGCAA+TGG | 0.524676 | 1_1:+80875643 | None:intergenic |
| TGATGAATTGGTATCTAGGA+TGG | 0.526622 | 1_1:-80877450 | Msa0047810:CDS |
| GTCGAGGTCGCCGGCGCGGG+AGG | 0.526895 | 1_1:+80880210 | None:intergenic |
| CTAGAATAACTTTATGGCAG+CGG | 0.541146 | 1_1:+80877357 | None:intergenic |
| CAACAACCATAAGCATCTCT+AGG | 0.542190 | 1_1:+80875408 | None:intergenic |
| GGTGATGCCATTTCTAGGTG+TGG | 0.543342 | 1_1:+80876451 | None:intergenic |
| GAACTCTGCAACGGATTCAA+AGG | 0.544374 | 1_1:+80879959 | None:intergenic |
| ATTTATTTCCTGCAAACGAT+CGG | 0.548048 | 1_1:+80876638 | None:intergenic |
| TCCACCGGAATGCGAATTGG+CGG | 0.548080 | 1_1:+80879910 | None:intergenic |
| CACCTGAAGAGCTTTGCCAT+TGG | 0.550101 | 1_1:-80876432 | Msa0047810:CDS |
| CCACCGGAATGCGAATTGGC+GGG | 0.551808 | 1_1:+80879911 | None:intergenic |
| GAAGGTAACGGAGACGGTCG+AGG | 0.554738 | 1_1:+80880194 | None:intergenic |
| TGTATAAGGCTACAAAGTGC+AGG | 0.556046 | 1_1:+80877761 | None:intergenic |
| GAAGACCCATTGAAGCTCAC+AGG | 0.556477 | 1_1:-80877883 | Msa0047810:CDS |
| ATAGGTATTTCATCCACTCA+AGG | 0.558796 | 1_1:-80877953 | Msa0047810:intron |
| TGCGCATAATCTTAACAAGA+AGG | 0.558852 | 1_1:-80880330 | Msa0047810:five_prime_UTR |
| AGAGAGCGGTGGAGTCCCAT+TGG | 0.560808 | 1_1:+80880140 | None:intergenic |
| TATCCCTTCCTGAAGAAGAC+AGG | 0.561398 | 1_1:-80877550 | Msa0047810:CDS |
| ACTGATGTGCCGAAATCGGA+AGG | 0.562037 | 1_1:+80880271 | None:intergenic |
| ACGAGCGGCATCGAGGTGAC+CGG | 0.567999 | 1_1:+80880102 | None:intergenic |
| CATCTGCTCTCTATAAACTA+CGG | 0.577759 | 1_1:+80875201 | None:intergenic |
| CGGTGAAGTAAGATTTGCAC+GGG | 0.578959 | 1_1:-80877798 | Msa0047810:CDS |
| GACGGTCGAGGTCGCCGGCG+CGG | 0.580861 | 1_1:+80880206 | None:intergenic |
| GTAAAGTCAACAGCATTGCC+CGG | 0.581664 | 1_1:+80875600 | None:intergenic |
| CTATCTATATTATTATTACA+CGG | 0.582185 | 1_1:-80875100 | Msa0047810:three_prime_UTR |
| TAGGATGGATGCCATGCAGA+TGG | 0.591367 | 1_1:-80877435 | Msa0047810:CDS |
| TAGGTATTTCATCCACTCAA+GGG | 0.593239 | 1_1:-80877952 | Msa0047810:CDS |
| AATTTGAAAGGGCAGTCAGA+AGG | 0.595225 | 1_1:+80877504 | None:intergenic |
| ACCAGGAAACTGAAATCCAC+CGG | 0.595513 | 1_1:+80879895 | None:intergenic |
| AAGCCTGTCTTCTTCAGGAA+GGG | 0.600256 | 1_1:+80877547 | None:intergenic |
| AAACAGTGTTCAGAAATCTA+CGG | 0.604061 | 1_1:+80875257 | None:intergenic |
| AGTCAGAAGGATTCTACGCA+AGG | 0.604259 | 1_1:+80877517 | None:intergenic |
| ACAGGGTCATATTAAGTGCA+AGG | 0.612478 | 1_1:-80877865 | Msa0047810:CDS |
| AAGACCCATTGAAGCTCACA+GGG | 0.615492 | 1_1:-80877882 | Msa0047810:CDS |
| GAAGCCTGTCTTCTTCAGGA+AGG | 0.615749 | 1_1:+80877546 | None:intergenic |
| ATATAGACAATTCTCAAAAG+CGG | 0.616785 | 1_1:-80877589 | Msa0047810:CDS |
| CTCCGTTACCTTCTTGAATG+CGG | 0.621540 | 1_1:-80880184 | Msa0047810:CDS |
| CGAAGAGATGAGTCTCCAGA+TGG | 0.622590 | 1_1:+80875572 | None:intergenic |
| TAGAGGTTTAGCCATCTGCA+TGG | 0.622841 | 1_1:+80877424 | None:intergenic |
| ATCTCTCTCGTCAAGCTCAG+CGG | 0.623099 | 1_1:+80875457 | None:intergenic |
| CGTGTTCTTCAAGACAAGGA+AGG | 0.623560 | 1_1:+80877252 | None:intergenic |
| ATTCAAGAAGGTAACGGAGA+CGG | 0.624043 | 1_1:+80880188 | None:intergenic |
| GATGTTTCCTCTTAAGCGTG+CGG | 0.625855 | 1_1:-80876491 | Msa0047810:CDS |
| GTTTCCTCTTAAGCGTGCGG+TGG | 0.625968 | 1_1:-80876488 | Msa0047810:CDS |
| TGCAACGGATTCAAAGGAGG+AGG | 0.631815 | 1_1:+80879965 | None:intergenic |
| CTCTGCAACGGATTCAAAGG+AGG | 0.633098 | 1_1:+80879962 | None:intergenic |
| AGAGATGAGTCTCCAGATGG+TGG | 0.634349 | 1_1:+80875575 | None:intergenic |
| ACAAGCGTAGTAGAGAGCGG+TGG | 0.635729 | 1_1:+80880129 | None:intergenic |
| GTATGAAGGATTTCCATGAA+GGG | 0.635765 | 1_1:-80877298 | Msa0047810:CDS |
| TGAAGAACACGACATGAGTG+TGG | 0.636750 | 1_1:-80877240 | Msa0047810:CDS |
| GATGAGTCTCCAGATGGTGG+CGG | 0.638331 | 1_1:+80875578 | None:intergenic |
| GTGATTGGAGAGAAAGTCAA+GGG | 0.639852 | 1_1:+80875329 | None:intergenic |
| TCATTATTTAGGGAAGACCC+AGG | 0.639945 | 1_1:+80875530 | None:intergenic |
| CGCCGCATTCAAGAAGGTAA+CGG | 0.641866 | 1_1:+80880182 | None:intergenic |
| GTTGGAACTGAACCCTTGAG+TGG | 0.645789 | 1_1:+80877940 | None:intergenic |
| GAGACTGATTGGAAAGAGCG+CGG | 0.646559 | 1_1:-80877818 | Msa0047810:CDS |
| AGACAGATTAGAGATTGCTG+TGG | 0.649010 | 1_1:-80877726 | Msa0047810:CDS |
| GGTGATTGGAGAGAAAGTCA+AGG | 0.656518 | 1_1:+80875328 | None:intergenic |
| ATGTCGTGTTCTTCAAGACA+AGG | 0.664235 | 1_1:+80877248 | None:intergenic |
| CTGATGTGCCGAAATCGGAA+GGG | 0.674283 | 1_1:+80880272 | None:intergenic |
| TCACGAAGAGAACTCTGCAA+CGG | 0.676952 | 1_1:+80879950 | None:intergenic |
| TGTCTGCTAGCATTAACCAA+TGG | 0.682080 | 1_1:+80876416 | None:intergenic |
| ATGAGTTTCATCGACGACGG+CGG | 0.684567 | 1_1:-80880307 | Msa0047810:CDS |
| AGGATGAGTTTCATCGACGA+CGG | 0.689914 | 1_1:-80880310 | Msa0047810:CDS |
| GCGGTGAAGTAAGATTTGCA+CGG | 0.696641 | 1_1:-80877799 | Msa0047810:CDS |
| GAGACAAGCGTAGTAGAGAG+CGG | 0.707889 | 1_1:+80880126 | None:intergenic |
| TTGTTCGCCTGAAATTACAG+CGG | 0.710853 | 1_1:+80875307 | None:intergenic |
| TAAGAGCAGAGTAATGACAC+CGG | 0.716123 | 1_1:+80880029 | None:intergenic |
| GAAGCATACGAGCGGCATCG+AGG | 0.723315 | 1_1:+80880095 | None:intergenic |
| ATAAAGTTATTCTAGCATCG+AGG | 0.746606 | 1_1:-80877349 | Msa0047810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTTGATTT+AGG | - | chr1_1:80875665-80875684 | Msa0047810:CDS | 10.0% |
| !! | ATTATTAAAAGATATTTGAT+AGG | - | chr1_1:80876474-80876493 | Msa0047810:CDS | 10.0% |
| !!! | TTTATTTTATTATAGTATTC+AGG | + | chr1_1:80876667-80876686 | None:intergenic | 10.0% |
| !! | ATAAATACAACATTATTATT+TGG | + | chr1_1:80877451-80877470 | None:intergenic | 10.0% |
| !!! | AATTTTGAAATTGAAAATAT+CGG | - | chr1_1:80878293-80878312 | Msa0047810:intron | 10.0% |
| !! | GTATTATTATTCTATAAATT+TGG | - | chr1_1:80878383-80878402 | Msa0047810:intron | 10.0% |
| !!! | TTTCAAAATATTTTTTAAAC+AGG | - | chr1_1:80878910-80878929 | Msa0047810:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+AGG | - | chr1_1:80879377-80879396 | Msa0047810:intron | 10.0% |
| !! | ATATTATTCATAGATGATTA+TGG | - | chr1_1:80875824-80875843 | Msa0047810:intron | 15.0% |
| !! | TTCTCAATGATAAATTAAAT+AGG | - | chr1_1:80875928-80875947 | Msa0047810:intron | 15.0% |
| !! | TCTCAATGATAAATTAAATA+GGG | - | chr1_1:80875929-80875948 | Msa0047810:intron | 15.0% |
| !! | AAAGTTCAATACTATAATAA+GGG | + | chr1_1:80877202-80877221 | None:intergenic | 15.0% |
| !! | AAAAGTTCAATACTATAATA+AGG | + | chr1_1:80877203-80877222 | None:intergenic | 15.0% |
| !! | AATAATGTTGTATTTATACA+TGG | - | chr1_1:80877454-80877473 | Msa0047810:CDS | 15.0% |
| !! | AAATCATTTAACTATAAATC+AGG | + | chr1_1:80878414-80878433 | None:intergenic | 15.0% |
| !!! | ACTTTTAAAAGAAATCTTAA+TGG | + | chr1_1:80878867-80878886 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTCTTTTAAAAG+TGG | - | chr1_1:80878866-80878885 | Msa0047810:intron | 15.0% |
| !!! | AAATATTTCAATTTTGGTTT+AGG | + | chr1_1:80879317-80879336 | None:intergenic | 15.0% |
| !!! | ATTGGTAAATATTTCAATTT+TGG | + | chr1_1:80879323-80879342 | None:intergenic | 15.0% |
| !! | GACAAATAATTGTTTGTAAA+GGG | - | chr1_1:80876017-80876036 | Msa0047810:intron | 20.0% |
| !! | TTAAACTATGAAAAACTAGT+AGG | + | chr1_1:80876506-80876525 | None:intergenic | 20.0% |
| !!! | TATTATAGTATTCAGGTTTT+TGG | + | chr1_1:80876660-80876679 | None:intergenic | 20.0% |
| !!! | TTTGTTTTATTTCTCCTAAA+AGG | - | chr1_1:80876768-80876787 | Msa0047810:intron | 20.0% |
| !!! | TTGTTTTATTTCTCCTAAAA+GGG | - | chr1_1:80876769-80876788 | Msa0047810:intron | 20.0% |
| !! | AGAGAATTTAGATATATTGT+CGG | + | chr1_1:80877055-80877074 | None:intergenic | 20.0% |
| !!! | TCAAACTTTTTCTTGAAAAA+TGG | + | chr1_1:80877622-80877641 | None:intergenic | 20.0% |
| !! | CTGAATAAAAGAAATGTATA+AGG | + | chr1_1:80877714-80877733 | None:intergenic | 20.0% |
| !! | ATAGAATAATAATACAGTCA+CGG | + | chr1_1:80878378-80878397 | None:intergenic | 20.0% |
| !! | ACTTAAAATCTTTAGCAAAT+TGG | + | chr1_1:80878541-80878560 | None:intergenic | 20.0% |
| !! | TTATTCAATCTTTAGCAAAT+TGG | + | chr1_1:80878579-80878598 | None:intergenic | 20.0% |
| !! | TTTGAAAATCAGACAATAAA+AGG | + | chr1_1:80878897-80878916 | None:intergenic | 20.0% |
| !! | TAAAATAAGTGGAAATGAAA+AGG | + | chr1_1:80879177-80879196 | None:intergenic | 20.0% |
| !!! | TACTTATTAAAGGTTTTATC+TGG | - | chr1_1:80879253-80879272 | Msa0047810:intron | 20.0% |
| !! | ATTTCCTTGATCATTATTTA+GGG | + | chr1_1:80879941-80879960 | None:intergenic | 20.0% |
| !! | AAGAATTTGATTCTACCTTT+TGG | - | chr1_1:80875586-80875605 | Msa0047810:CDS | 25.0% |
| !! | ATTCTACCTTTTGGATTAAT+TGG | - | chr1_1:80875595-80875614 | Msa0047810:CDS | 25.0% |
| ! | CATAAACCAATTAATCCAAA+AGG | + | chr1_1:80875604-80875623 | None:intergenic | 25.0% |
| !! | ATTGGTTTATGAGAATGTTA+AGG | - | chr1_1:80875613-80875632 | Msa0047810:CDS | 25.0% |
| !! | AATGCACATTTTCATAACTT+AGG | + | chr1_1:80875795-80875814 | None:intergenic | 25.0% |
| ! | TTATTCATAGATGATTATGG+AGG | - | chr1_1:80875827-80875846 | Msa0047810:intron | 25.0% |
| !! | TTAGAAGCTCACTTTAATTT+AGG | - | chr1_1:80875885-80875904 | Msa0047810:intron | 25.0% |
| ! | CAATGATAAATTAAATAGGG+AGG | - | chr1_1:80875932-80875951 | Msa0047810:intron | 25.0% |
| !! | TAAATAGGGAGGATTTTATA+AGG | - | chr1_1:80875943-80875962 | Msa0047810:intron | 25.0% |
| ! | AAAGGAAATCATTAATGCAT+GGG | - | chr1_1:80875966-80875985 | Msa0047810:intron | 25.0% |
| !! | TGTAAAGGGTCTTATATTTA+CGG | - | chr1_1:80875995-80876014 | Msa0047810:intron | 25.0% |
| ! | GGACAAATAATTGTTTGTAA+AGG | - | chr1_1:80876016-80876035 | Msa0047810:intron | 25.0% |
| ! | GAGAATTTAGATATATTGTC+GGG | + | chr1_1:80877054-80877073 | None:intergenic | 25.0% |
| ! | TCTAATATTCTTACACAACA+AGG | - | chr1_1:80877278-80877297 | Msa0047810:CDS | 25.0% |
| ! | AACCATCAAATGATAAAACA+AGG | - | chr1_1:80877321-80877340 | Msa0047810:CDS | 25.0% |
| ! | ATATAGACAATTCTCAAAAG+CGG | - | chr1_1:80877869-80877888 | Msa0047810:CDS | 25.0% |
| !!! | AGATAATGGAATTGATGAAT+TGG | - | chr1_1:80877996-80878015 | Msa0047810:intron | 25.0% |
| !! | TTTGAAATTGAAAATATCGG+AGG | - | chr1_1:80878296-80878315 | Msa0047810:intron | 25.0% |
| ! | TTGAAATTGAAAATATCGGA+GGG | - | chr1_1:80878297-80878316 | Msa0047810:intron | 25.0% |
| ! | TAGAATAATAATACAGTCAC+GGG | + | chr1_1:80878377-80878396 | None:intergenic | 25.0% |
| !! | TTACATAAGATGATTTGCAA+TGG | - | chr1_1:80878453-80878472 | Msa0047810:intron | 25.0% |
| ! | CAGATTGAAAAACAAAAACT+AGG | + | chr1_1:80878491-80878510 | None:intergenic | 25.0% |
| !!! | CTAGTTTTTGTTTTTCAATC+TGG | - | chr1_1:80878489-80878508 | Msa0047810:intron | 25.0% |
| ! | AACAAACATGCATAAAACTA+AGG | + | chr1_1:80878623-80878642 | None:intergenic | 25.0% |
| ! | TTTATCCTGTATTTCTTTGT+TGG | - | chr1_1:80878787-80878806 | Msa0047810:intron | 25.0% |
| !!! | AATATTTTTTAAACAGGCTG+AGG | - | chr1_1:80878916-80878935 | Msa0047810:intron | 25.0% |
| ! | ACCTTTAATAAGTAACTACT+GGG | + | chr1_1:80879247-80879266 | None:intergenic | 25.0% |
| ! | AACCTTTAATAAGTAACTAC+TGG | + | chr1_1:80879248-80879267 | None:intergenic | 25.0% |
| !!! | TATTAAAGGTTTTATCTGGA+TGG | - | chr1_1:80879257-80879276 | Msa0047810:intron | 25.0% |
| ! | CCTTAATATACTTCTAACAA+TGG | + | chr1_1:80879685-80879704 | None:intergenic | 25.0% |
| !! | CCATTGTTAGAAGTATATTA+AGG | - | chr1_1:80879682-80879701 | Msa0047810:intron | 25.0% |
| ! | AGATTAAACAAGATATGATC+TGG | + | chr1_1:80879726-80879745 | None:intergenic | 25.0% |
| ! | TAATTCAAAATTACAGGCAA+TGG | + | chr1_1:80879818-80879837 | None:intergenic | 25.0% |
| ! | GGCAAATAATTCAAAATTAC+AGG | + | chr1_1:80879824-80879843 | None:intergenic | 25.0% |
| ! | GATTTCCTTGATCATTATTT+AGG | + | chr1_1:80879942-80879961 | None:intergenic | 25.0% |
| !! | TTGATGATTTACGTGATAAA+TGG | - | chr1_1:80879965-80879984 | Msa0047810:CDS | 25.0% |
| ! | TTACTCTGCTCTTAATTTGA+AGG | - | chr1_1:80875438-80875457 | Msa0047810:CDS | 30.0% |
| TTTATGAGAATGTTAAGGTG+TGG | - | chr1_1:80875618-80875637 | Msa0047810:CDS | 30.0% | |
| !! | GTGGAAGCTTTTTCTAATTA+AGG | - | chr1_1:80875637-80875656 | Msa0047810:CDS | 30.0% |
| GAAAGGAAATCATTAATGCA+TGG | - | chr1_1:80875965-80875984 | Msa0047810:intron | 30.0% | |
| ! | TTGTAAAGGGTCTTATGATT+AGG | - | chr1_1:80876030-80876049 | Msa0047810:intron | 30.0% |
| ! | TGTAAAGGGTCTTATGATTA+GGG | - | chr1_1:80876031-80876050 | Msa0047810:intron | 30.0% |
| TGAGAATTGAAATGACTGAT+TGG | - | chr1_1:80876126-80876145 | Msa0047810:intron | 30.0% | |
| ! | CATAAGTTTAGCTTCATAGT+TGG | - | chr1_1:80876312-80876331 | Msa0047810:intron | 30.0% |
| AAAAACCCACCAAAACAATA+TGG | - | chr1_1:80876585-80876604 | Msa0047810:intron | 30.0% | |
| AGCATTAGATATCTGATATC+AGG | + | chr1_1:80877015-80877034 | None:intergenic | 30.0% | |
| CATAAAACAATGAATCGAGT+AGG | - | chr1_1:80877248-80877267 | Msa0047810:CDS | 30.0% | |
| TTCTTACACAACAAGGAATT+AGG | - | chr1_1:80877285-80877304 | Msa0047810:CDS | 30.0% | |
| !!! | AGCCTTGTTTTATCATTTGA+TGG | + | chr1_1:80877326-80877345 | None:intergenic | 30.0% |
| TGTTGTATTTATACATGGTC+TGG | - | chr1_1:80877459-80877478 | Msa0047810:CDS | 30.0% | |
| GTTGTATTTATACATGGTCT+GGG | - | chr1_1:80877460-80877479 | Msa0047810:CDS | 30.0% | |
| ! | AGAAAAAGTTTGAGACTGAT+TGG | - | chr1_1:80877629-80877648 | Msa0047810:CDS | 30.0% |
| !!! | TCAAAAGCGGTTTATTTTAC+AGG | - | chr1_1:80877882-80877901 | Msa0047810:CDS | 30.0% |
| !!! | CAAAAGCGGTTTATTTTACA+GGG | - | chr1_1:80877883-80877902 | Msa0047810:CDS | 30.0% |
| CTCATAAGTGGAATTTGAAA+GGG | + | chr1_1:80877968-80877987 | None:intergenic | 30.0% | |
| TCTCATAAGTGGAATTTGAA+AGG | + | chr1_1:80877969-80877988 | None:intergenic | 30.0% | |
| TCAAATTCCACTTATGAGAA+TGG | - | chr1_1:80877970-80877989 | Msa0047810:intron | 30.0% | |
| TATGAGAATGGTCAAGATAA+TGG | - | chr1_1:80877982-80878001 | Msa0047810:intron | 30.0% | |
| GAATTGATGAATTGGTATCT+AGG | - | chr1_1:80878004-80878023 | Msa0047810:intron | 30.0% | |
| TCGATGCTAGAATAACTTTA+TGG | + | chr1_1:80878110-80878129 | None:intergenic | 30.0% | |
| ATAAAGTTATTCTAGCATCG+AGG | - | chr1_1:80878109-80878128 | Msa0047810:intron | 30.0% | |
| ATAATTCATCTTTCCCTTCA+TGG | + | chr1_1:80878176-80878195 | None:intergenic | 30.0% | |
| ATTTCAAAATTCCACAGTGA+AGG | + | chr1_1:80878284-80878303 | None:intergenic | 30.0% | |
| TAGTATGCCAATAATTACCA+CGG | - | chr1_1:80878323-80878342 | Msa0047810:intron | 30.0% | |
| TAAGTTACCGTGGTAATTAT+TGG | + | chr1_1:80878333-80878352 | None:intergenic | 30.0% | |
| ATGCATAAAACTAAGGCAAT+TGG | + | chr1_1:80878616-80878635 | None:intergenic | 30.0% | |
| ATAACAACACAAATATGACC+TGG | + | chr1_1:80878652-80878671 | None:intergenic | 30.0% | |
| ATTTATTTCCTGCAAACGAT+CGG | + | chr1_1:80878823-80878842 | None:intergenic | 30.0% | |
| TAAGATGAAGAAAGAGAGAT+TGG | + | chr1_1:80879085-80879104 | None:intergenic | 30.0% | |
| CTTTCTTCATCTTACATTGA+TGG | - | chr1_1:80879091-80879110 | Msa0047810:intron | 30.0% | |
| ! | ATAGGGATGTCTAAAATAAG+TGG | + | chr1_1:80879188-80879207 | None:intergenic | 30.0% |
| CTCTAGTAAGTAGTAACATA+GGG | + | chr1_1:80879205-80879224 | None:intergenic | 30.0% | |
| CCTTTAATAAGTAACTACTG+GGG | + | chr1_1:80879246-80879265 | None:intergenic | 30.0% | |
| GCATCTTAATTGTAGATCAT+TGG | + | chr1_1:80879341-80879360 | None:intergenic | 30.0% | |
| ! | TTTATGACTGCACATGTTTT+AGG | - | chr1_1:80879445-80879464 | Msa0047810:intron | 30.0% |
| TTGACTATTTGTTCATTTCC+AGG | - | chr1_1:80879755-80879774 | Msa0047810:intron | 30.0% | |
| TATTTGTTCATTTCCAGGTA+TGG | - | chr1_1:80879760-80879779 | Msa0047810:intron | 30.0% | |
| TCTTCCCTAAATAATGATCA+AGG | - | chr1_1:80879934-80879953 | Msa0047810:CDS | 30.0% | |
| AAACAGTGTTCAGAAATCTA+CGG | + | chr1_1:80880204-80880223 | None:intergenic | 30.0% | |
| !!! | GATTTCTGAACACTGTTTTT+TGG | - | chr1_1:80880206-80880225 | Msa0047810:CDS | 30.0% |
| TGCGCATAATCTTAACAAGA+AGG | - | chr1_1:80875128-80875147 | Msa0047810:three_prime_UTR | 35.0% | |
| !!! | CGTTTGGGACTTTTTTTAAG+GGG | + | chr1_1:80875213-80875232 | None:intergenic | 35.0% |
| !!! | CCGTTTGGGACTTTTTTTAA+GGG | + | chr1_1:80875214-80875233 | None:intergenic | 35.0% |
| CCCTTAAAAAAAGTCCCAAA+CGG | - | chr1_1:80875211-80875230 | Msa0047810:three_prime_UTR | 35.0% | |
| ! | CTGCTCTTAATTTGAAGGTT+AGG | - | chr1_1:80875443-80875462 | Msa0047810:CDS | 35.0% |
| GGTAGAATCAAATTCTTACC+AGG | + | chr1_1:80875583-80875602 | None:intergenic | 35.0% | |
| ACAAAAACTGAAACTCTCGT+AGG | + | chr1_1:80875754-80875773 | None:intergenic | 35.0% | |
| ! | AGGGAGGATTTTATAAGGAA+AGG | - | chr1_1:80875948-80875967 | Msa0047810:intron | 35.0% |
| ! | ATGCATGGGACATTTTGTAA+AGG | - | chr1_1:80875980-80875999 | Msa0047810:intron | 35.0% |
| ! | TGCATGGGACATTTTGTAAA+GGG | - | chr1_1:80875981-80876000 | Msa0047810:intron | 35.0% |
| TTGAAGGAGGATACAATGAA+GGG | - | chr1_1:80876071-80876090 | Msa0047810:intron | 35.0% | |
| CAACAGTCTGTGTAACATTT+AGG | + | chr1_1:80876164-80876183 | None:intergenic | 35.0% | |
| ! | ATGTTTTCAACGACAGAATG+CGG | - | chr1_1:80876546-80876565 | Msa0047810:intron | 35.0% |
| !!! | GTCTACCATATTGTTTTGGT+GGG | + | chr1_1:80876593-80876612 | None:intergenic | 35.0% |
| CACCAAAACAATATGGTAGA+CGG | - | chr1_1:80876592-80876611 | Msa0047810:intron | 35.0% | |
| ! | ATATCGTCTCACTAGGTTTT+GGG | - | chr1_1:80876740-80876759 | Msa0047810:intron | 35.0% |
| TTGACCAACATTAGTGATCT+AGG | + | chr1_1:80876823-80876842 | None:intergenic | 35.0% | |
| TGGGAGTTTCATTCCTAATT+AGG | + | chr1_1:80876909-80876928 | None:intergenic | 35.0% | |
| GAACATCACAAGGGATAAAA+GGG | - | chr1_1:80876954-80876973 | Msa0047810:intron | 35.0% | |
| TGATATCAGGTTCCTATTTG+AGG | + | chr1_1:80877002-80877021 | None:intergenic | 35.0% | |
| ATAGGTATTTCATCCACTCA+AGG | - | chr1_1:80877505-80877524 | Msa0047810:CDS | 35.0% | |
| TAGGTATTTCATCCACTCAA+GGG | - | chr1_1:80877506-80877525 | Msa0047810:CDS | 35.0% | |
| TACAGTAAAAACCACATCTG+GGG | + | chr1_1:80877551-80877570 | None:intergenic | 35.0% | |
| GTACAGTAAAAACCACATCT+GGG | + | chr1_1:80877552-80877571 | None:intergenic | 35.0% | |
| TGTACAGTAAAAACCACATC+TGG | + | chr1_1:80877553-80877572 | None:intergenic | 35.0% | |
| ! | GATGTGGTTTTTACTGTACA+AGG | - | chr1_1:80877553-80877572 | Msa0047810:CDS | 35.0% |
| ATCTTGACCATTCTCATAAG+TGG | + | chr1_1:80877980-80877999 | None:intergenic | 35.0% | |
| TGATGAATTGGTATCTAGGA+TGG | - | chr1_1:80878008-80878027 | Msa0047810:intron | 35.0% | |
| ACATCAGCAAGATCATTTAG+AGG | + | chr1_1:80878054-80878073 | None:intergenic | 35.0% | |
| CTAGAATAACTTTATGGCAG+CGG | + | chr1_1:80878104-80878123 | None:intergenic | 35.0% | |
| GTATGAAGGATTTCCATGAA+GGG | - | chr1_1:80878160-80878179 | Msa0047810:intron | 35.0% | |
| AAGATGATCTTAAGTTACCG+TGG | + | chr1_1:80878343-80878362 | None:intergenic | 35.0% | |
| TTTAGCAAATTGGTTGCGTT+TGG | + | chr1_1:80878531-80878550 | None:intergenic | 35.0% | |
| !!! | TGCATGTTTGTTTTTGTACC+AGG | - | chr1_1:80878631-80878650 | Msa0047810:intron | 35.0% |
| TCTCATAAACTTCAAGCAGA+AGG | + | chr1_1:80878709-80878728 | None:intergenic | 35.0% | |
| CTGAACCAACAAAGAAATAC+AGG | + | chr1_1:80878795-80878814 | None:intergenic | 35.0% | |
| !! | CTGTATTTCTTTGTTGGTTC+AGG | - | chr1_1:80878793-80878812 | Msa0047810:intron | 35.0% |
| GGATGTATAAAAACCTGATC+TGG | + | chr1_1:80878846-80878865 | None:intergenic | 35.0% | |
| GCTCTAGTAAGTAGTAACAT+AGG | + | chr1_1:80879206-80879225 | None:intergenic | 35.0% | |
| CCCCAGTAGTTACTTATTAA+AGG | - | chr1_1:80879243-80879262 | Msa0047810:intron | 35.0% | |
| ATGGTTGCTGAAATGTATTC+TGG | - | chr1_1:80879276-80879295 | Msa0047810:intron | 35.0% | |
| TCTCCTTAATTCATCTACCA+CGG | - | chr1_1:80879481-80879500 | Msa0047810:intron | 35.0% | |
| AAATGACCTTAGGGTTATGT+TGG | - | chr1_1:80879508-80879527 | Msa0047810:intron | 35.0% | |
| AATCTTCAAAACACCATACC+TGG | + | chr1_1:80879776-80879795 | None:intergenic | 35.0% | |
| !!! | GGTATGGTGTTTTGAAGATT+CGG | - | chr1_1:80879776-80879795 | Msa0047810:intron | 35.0% |
| !!! | GTATGGTGTTTTGAAGATTC+GGG | - | chr1_1:80879777-80879796 | Msa0047810:intron | 35.0% |
| TTGCCGATACAAAAGAATTC+CGG | - | chr1_1:80879839-80879858 | Msa0047810:intron | 35.0% | |
| CATCTGCTCTCTATAAACTA+CGG | + | chr1_1:80880260-80880279 | None:intergenic | 35.0% | |
| !!! | GCCGTTTGGGACTTTTTTTA+AGG | + | chr1_1:80875215-80875234 | None:intergenic | 40.0% |
| !! | ATTCAAGAAGGTAACGGAGA+CGG | + | chr1_1:80875273-80875292 | None:intergenic | 40.0% |
| TAAGAGCAGAGTAATGACAC+CGG | + | chr1_1:80875432-80875451 | None:intergenic | 40.0% | |
| GAGAGAGCTTATGAGAAAGT+TGG | - | chr1_1:80875858-80875877 | Msa0047810:intron | 40.0% | |
| ! | AAGGGTCTTATGATTAGGGA+TGG | - | chr1_1:80876035-80876054 | Msa0047810:intron | 40.0% |
| GTCTTATGATTAGGGATGGA+GGG | - | chr1_1:80876039-80876058 | Msa0047810:intron | 40.0% | |
| GTTGAAGGAGGATACAATGA+AGG | - | chr1_1:80876070-80876089 | Msa0047810:intron | 40.0% | |
| ATGTTACACAGACTGTTGCT+AGG | - | chr1_1:80876166-80876185 | Msa0047810:intron | 40.0% | |
| TGTTACACAGACTGTTGCTA+GGG | - | chr1_1:80876167-80876186 | Msa0047810:intron | 40.0% | |
| GTTGTGTTAATGTGTCGTGT+CGG | + | chr1_1:80876224-80876243 | None:intergenic | 40.0% | |
| !! | CGCTGCTGTAGTTTTTGAAA+TGG | + | chr1_1:80876288-80876307 | None:intergenic | 40.0% |
| TTCAAAAACTACAGCAGCGT+CGG | - | chr1_1:80876289-80876308 | Msa0047810:intron | 40.0% | |
| GTACTGTTTGTGCAATGGTA+AGG | - | chr1_1:80876402-80876421 | Msa0047810:intron | 40.0% | |
| !!! | CGTCTACCATATTGTTTTGG+TGG | + | chr1_1:80876594-80876613 | None:intergenic | 40.0% |
| ! | TGCCGTCTACCATATTGTTT+TGG | + | chr1_1:80876597-80876616 | None:intergenic | 40.0% |
| ! | GCAGTCTATGATGAAAGCAT+TGG | - | chr1_1:80876619-80876638 | Msa0047810:intron | 40.0% |
| TAACAAATCGAAGTTGCACC+AGG | - | chr1_1:80876714-80876733 | Msa0047810:intron | 40.0% | |
| ! | CATATCGTCTCACTAGGTTT+TGG | - | chr1_1:80876739-80876758 | Msa0047810:intron | 40.0% |
| ! | GCAATGAAGCAAACCCTTTT+AGG | + | chr1_1:80876785-80876804 | None:intergenic | 40.0% |
| ! | GGTTTGCTTCATTGCTTAAG+TGG | - | chr1_1:80876790-80876809 | Msa0047810:intron | 40.0% |
| TTGCTTCATTGCTTAAGTGG+AGG | - | chr1_1:80876793-80876812 | Msa0047810:intron | 40.0% | |
| CTCTCCTAGATCACTAATGT+TGG | - | chr1_1:80876816-80876835 | Msa0047810:intron | 40.0% | |
| AATTAGGCACCAGCCATATT+TGG | + | chr1_1:80876893-80876912 | None:intergenic | 40.0% | |
| AATATGGCTGGTGCCTAATT+AGG | - | chr1_1:80876893-80876912 | Msa0047810:intron | 40.0% | |
| AGGAATGAAACTCCCAGAAA+AGG | - | chr1_1:80876913-80876932 | Msa0047810:intron | 40.0% | |
| TGAAACTCCCAGAAAAGGAA+AGG | - | chr1_1:80876918-80876937 | Msa0047810:intron | 40.0% | |
| TCCCAGAAAAGGAAAGGATA+TGG | - | chr1_1:80876924-80876943 | Msa0047810:intron | 40.0% | |
| ! | CCCATATCCTTTCCTTTTCT+GGG | + | chr1_1:80876928-80876947 | None:intergenic | 40.0% |
| CCCAGAAAAGGAAAGGATAT+GGG | - | chr1_1:80876925-80876944 | Msa0047810:intron | 40.0% | |
| ! | ACCCATATCCTTTCCTTTTC+TGG | + | chr1_1:80876929-80876948 | None:intergenic | 40.0% |
| AAGGAAAGGATATGGGTATG+AGG | - | chr1_1:80876932-80876951 | Msa0047810:intron | 40.0% | |
| GGAACATCACAAGGGATAAA+AGG | - | chr1_1:80876953-80876972 | Msa0047810:intron | 40.0% | |
| ! | AAGGGATAAAAGGGTTTGCT+TGG | - | chr1_1:80876963-80876982 | Msa0047810:intron | 40.0% |
| ! | AGGGATAAAAGGGTTTGCTT+GGG | - | chr1_1:80876964-80876983 | Msa0047810:intron | 40.0% |
| TATCAGGTTCCTATTTGAGG+TGG | + | chr1_1:80876999-80877018 | None:intergenic | 40.0% | |
| ACAGTAAAAACCACATCTGG+GGG | + | chr1_1:80877550-80877569 | None:intergenic | 40.0% | |
| ACAGGGTCATATTAAGTGCA+AGG | - | chr1_1:80877593-80877612 | Msa0047810:CDS | 40.0% | |
| TGTATAAGGCTACAAAGTGC+AGG | + | chr1_1:80877700-80877719 | None:intergenic | 40.0% | |
| AGACAGATTAGAGATTGCTG+TGG | - | chr1_1:80877732-80877751 | Msa0047810:CDS | 40.0% | |
| AGAGATTGCTGTGGATGATA+TGG | - | chr1_1:80877741-80877760 | Msa0047810:CDS | 40.0% | |
| AATTTGAAAGGGCAGTCAGA+AGG | + | chr1_1:80877957-80877976 | None:intergenic | 40.0% | |
| CGTATGAAGGATTTCCATGA+AGG | - | chr1_1:80878159-80878178 | Msa0047810:intron | 40.0% | |
| ATGTCGTGTTCTTCAAGACA+AGG | + | chr1_1:80878213-80878232 | None:intergenic | 40.0% | |
| TAAGTCTCTTTCCTTCACTG+TGG | - | chr1_1:80878270-80878289 | Msa0047810:intron | 40.0% | |
| GCAGGAAATAAATCCAGATC+AGG | - | chr1_1:80878830-80878849 | Msa0047810:intron | 40.0% | |
| TGTCTGCTAGCATTAACCAA+TGG | + | chr1_1:80879045-80879064 | None:intergenic | 40.0% | |
| CATATGTAATTCACCACGAC+AGG | + | chr1_1:80879600-80879619 | None:intergenic | 40.0% | |
| TGCCGATACAAAAGAATTCC+GGG | - | chr1_1:80879840-80879859 | Msa0047810:intron | 40.0% | |
| ! | TGCCCGGAATTCTTTTGTAT+CGG | + | chr1_1:80879845-80879864 | None:intergenic | 40.0% |
| TCATTATTTAGGGAAGACCC+AGG | + | chr1_1:80879931-80879950 | None:intergenic | 40.0% | |
| CAACAACCATAAGCATCTCT+AGG | + | chr1_1:80880053-80880072 | None:intergenic | 40.0% | |
| GTGATTGGAGAGAAAGTCAA+GGG | + | chr1_1:80880132-80880151 | None:intergenic | 40.0% | |
| TTGTTCGCCTGAAATTACAG+CGG | + | chr1_1:80880154-80880173 | None:intergenic | 40.0% | |
| GGCGAACAAACTGTAATTTC+AGG | - | chr1_1:80880165-80880184 | Msa0047810:CDS | 40.0% | |
| TAGAGAGCAGATGCTAAGTT+AGG | - | chr1_1:80880267-80880286 | Msa0047810:CDS | 40.0% | |
| ! | AGATGCTAAGTTAGGTTGCT+TGG | - | chr1_1:80880275-80880294 | Msa0047810:CDS | 40.0% |
| ! | TTGCTTGGAGTGCTTAAGTT+GGG | - | chr1_1:80880290-80880309 | Msa0047810:CDS | 40.0% |
| AGGATGAGTTTCATCGACGA+CGG | - | chr1_1:80875148-80875167 | Msa0047810:three_prime_UTR | 45.0% | |
| GACTTAGACCCTTCCGATTT+CGG | - | chr1_1:80875178-80875197 | Msa0047810:three_prime_UTR | 45.0% | |
| CTCCGTTACCTTCTTGAATG+CGG | - | chr1_1:80875274-80875293 | Msa0047810:CDS | 45.0% | |
| !! | GTTTTCGAGAAGCATACGAG+CGG | + | chr1_1:80875374-80875393 | None:intergenic | 45.0% |
| GCTCGTATGCTTCTCGAAAA+CGG | - | chr1_1:80875373-80875392 | Msa0047810:CDS | 45.0% | |
| ! | GAACTCTGCAACGGATTCAA+AGG | + | chr1_1:80875502-80875521 | None:intergenic | 45.0% |
| TCACGAAGAGAACTCTGCAA+CGG | + | chr1_1:80875511-80875530 | None:intergenic | 45.0% | |
| AAATCCACCGGAATGCGAAT+TGG | + | chr1_1:80875554-80875573 | None:intergenic | 45.0% | |
| ACCAGGAAACTGAAATCCAC+CGG | + | chr1_1:80875566-80875585 | None:intergenic | 45.0% | |
| ! | GGTCTTATGATTAGGGATGG+AGG | - | chr1_1:80876038-80876057 | Msa0047810:intron | 45.0% |
| ! | TGGAGGGTGTAGAAAGTTGA+AGG | - | chr1_1:80876055-80876074 | Msa0047810:intron | 45.0% |
| AGGGTGTAGAAAGTTGAAGG+AGG | - | chr1_1:80876058-80876077 | Msa0047810:intron | 45.0% | |
| AAGGGCTTAGTTGTTGTCAG+TGG | - | chr1_1:80876089-80876108 | Msa0047810:intron | 45.0% | |
| AAGACATTGTCCTCCAAGCA+GGG | + | chr1_1:80876352-80876371 | None:intergenic | 45.0% | |
| AAAGACATTGTCCTCCAAGC+AGG | + | chr1_1:80876353-80876372 | None:intergenic | 45.0% | |
| TGCCTGCAAAACAAGACATG+AGG | - | chr1_1:80876373-80876392 | Msa0047810:intron | 45.0% | |
| GCCTGCAAAACAAGACATGA+GGG | - | chr1_1:80876374-80876393 | Msa0047810:intron | 45.0% | |
| CCTGCAAAACAAGACATGAG+GGG | - | chr1_1:80876375-80876394 | Msa0047810:intron | 45.0% | |
| CAAAACAAGACATGAGGGGT+GGG | - | chr1_1:80876379-80876398 | Msa0047810:intron | 45.0% | |
| AAAACAAGACATGAGGGGTG+GGG | - | chr1_1:80876380-80876399 | Msa0047810:intron | 45.0% | |
| TGGGTATGAGGAACATCACA+AGG | - | chr1_1:80876944-80876963 | Msa0047810:intron | 45.0% | |
| GGGTATGAGGAACATCACAA+GGG | - | chr1_1:80876945-80876964 | Msa0047810:intron | 45.0% | |
| !! | AAGAGTGCTCCACCTCAAAT+AGG | - | chr1_1:80876987-80877006 | Msa0047810:intron | 45.0% |
| TCACACACACACATGTGAGA+TGG | - | chr1_1:80877394-80877413 | Msa0047810:CDS | 45.0% | |
| CACACACACACATGTGAGAT+GGG | - | chr1_1:80877395-80877414 | Msa0047810:CDS | 45.0% | |
| ACACACACACATGTGAGATG+GGG | - | chr1_1:80877396-80877415 | Msa0047810:CDS | 45.0% | |
| AAGACCCATTGAAGCTCACA+GGG | - | chr1_1:80877576-80877595 | Msa0047810:CDS | 45.0% | |
| ATGACCCTGTGAGCTTCAAT+GGG | + | chr1_1:80877583-80877602 | None:intergenic | 45.0% | |
| TATGACCCTGTGAGCTTCAA+TGG | + | chr1_1:80877584-80877603 | None:intergenic | 45.0% | |
| GCGGTGAAGTAAGATTTGCA+CGG | - | chr1_1:80877659-80877678 | Msa0047810:CDS | 45.0% | |
| CGGTGAAGTAAGATTTGCAC+GGG | - | chr1_1:80877660-80877679 | Msa0047810:CDS | 45.0% | |
| TATCCCTTCCTGAAGAAGAC+AGG | - | chr1_1:80877908-80877927 | Msa0047810:CDS | 45.0% | |
| AAGCCTGTCTTCTTCAGGAA+GGG | + | chr1_1:80877914-80877933 | None:intergenic | 45.0% | |
| AGTCAGAAGGATTCTACGCA+AGG | + | chr1_1:80877944-80877963 | None:intergenic | 45.0% | |
| TAGAGGTTTAGCCATCTGCA+TGG | + | chr1_1:80878037-80878056 | None:intergenic | 45.0% | |
| AGCAAGACTCTCACGTATGA+AGG | - | chr1_1:80878146-80878165 | Msa0047810:intron | 45.0% | |
| CGTGTTCTTCAAGACAAGGA+AGG | + | chr1_1:80878209-80878228 | None:intergenic | 45.0% | |
| TGAAGAACACGACATGAGTG+TGG | - | chr1_1:80878218-80878237 | Msa0047810:intron | 45.0% | |
| GATGTTTCCTCTTAAGCGTG+CGG | - | chr1_1:80878967-80878986 | Msa0047810:intron | 45.0% | |
| ! | CTTCAGGTGATGCCATTTCT+AGG | + | chr1_1:80879015-80879034 | None:intergenic | 45.0% |
| AACCAATGGCAAAGCTCTTC+AGG | + | chr1_1:80879031-80879050 | None:intergenic | 45.0% | |
| GAGCCGTGGTAGATGAATTA+AGG | + | chr1_1:80879487-80879506 | None:intergenic | 45.0% | |
| CACGGCTCAAAATGACCTTA+GGG | - | chr1_1:80879499-80879518 | Msa0047810:intron | 45.0% | |
| CCTCTTCCAACATAACCCTA+AGG | + | chr1_1:80879517-80879536 | None:intergenic | 45.0% | |
| CCTTAGGGTTATGTTGGAAG+AGG | - | chr1_1:80879514-80879533 | Msa0047810:intron | 45.0% | |
| GTAAAGTCAACAGCATTGCC+CGG | + | chr1_1:80879861-80879880 | None:intergenic | 45.0% | |
| GCAGAGCATGAAAAGTCATC+AGG | - | chr1_1:80880072-80880091 | Msa0047810:CDS | 45.0% | |
| GGTGATTGGAGAGAAAGTCA+AGG | + | chr1_1:80880133-80880152 | None:intergenic | 45.0% | |
| CCTGAAATTACAGCGGTGAT+TGG | + | chr1_1:80880147-80880166 | None:intergenic | 45.0% | |
| CCAATCACCGCTGTAATTTC+AGG | - | chr1_1:80880144-80880163 | Msa0047810:CDS | 45.0% | |
| ! | GTTGCTTGGAGTGCTTAAGT+TGG | - | chr1_1:80880289-80880308 | Msa0047810:CDS | 45.0% |
| !! | AATATTTATTATATTTGAAT+AGG | - | chr1_1:80877487-80877506 | Msa0047810:CDS | 5.0% |
| !! | TGAAAAAAAAAAAAAAAAAA+AGG | - | chr1_1:80879374-80879393 | Msa0047810:intron | 5.0% |
| ATGAGTTTCATCGACGACGG+CGG | - | chr1_1:80875151-80875170 | Msa0047810:three_prime_UTR | 50.0% | |
| CTGATGTGCCGAAATCGGAA+GGG | + | chr1_1:80875189-80875208 | None:intergenic | 50.0% | |
| ACTGATGTGCCGAAATCGGA+AGG | + | chr1_1:80875190-80875209 | None:intergenic | 50.0% | |
| CTTGGAAAACGTCGCCGTTT+GGG | + | chr1_1:80875228-80875247 | None:intergenic | 50.0% | |
| CGCCGCATTCAAGAAGGTAA+CGG | + | chr1_1:80875279-80875298 | None:intergenic | 50.0% | |
| CGTTAACGCCGCATTCAAGA+AGG | + | chr1_1:80875285-80875304 | None:intergenic | 50.0% | |
| GAGACAAGCGTAGTAGAGAG+CGG | + | chr1_1:80875335-80875354 | None:intergenic | 50.0% | |
| TGCTCCGAACACACGTTTGA+CGG | - | chr1_1:80875403-80875422 | Msa0047810:CDS | 50.0% | |
| GTCACCGTCAAACGTGTGTT+CGG | + | chr1_1:80875410-80875429 | None:intergenic | 50.0% | |
| AACACACGTTTGACGGTGAC+CGG | - | chr1_1:80875410-80875429 | Msa0047810:CDS | 50.0% | |
| ! | TGCAACGGATTCAAAGGAGG+AGG | + | chr1_1:80875496-80875515 | None:intergenic | 50.0% |
| ! | CTCTGCAACGGATTCAAAGG+AGG | + | chr1_1:80875499-80875518 | None:intergenic | 50.0% |
| ! | TCCGGTGGATTTCAGTTTCC+TGG | - | chr1_1:80875562-80875581 | Msa0047810:CDS | 50.0% |
| ! | TGTTAATGTGTCGTGTCGGC+TGG | + | chr1_1:80876220-80876239 | None:intergenic | 50.0% |
| GTGCTTAATCTTCCCCTGCT+TGG | - | chr1_1:80876336-80876355 | Msa0047810:intron | 50.0% | |
| CTTAATCTTCCCCTGCTTGG+AGG | - | chr1_1:80876339-80876358 | Msa0047810:intron | 50.0% | |
| AGACATTGTCCTCCAAGCAG+GGG | + | chr1_1:80876351-80876370 | None:intergenic | 50.0% | |
| !!! | CCCCTCATGTCTTGTTTTGC+AGG | + | chr1_1:80876378-80876397 | None:intergenic | 50.0% |
| GCAAAACAAGACATGAGGGG+TGG | - | chr1_1:80876378-80876397 | Msa0047810:intron | 50.0% | |
| !! | GTGGGGTACTGTTTGTGCAA+TGG | - | chr1_1:80876397-80876416 | Msa0047810:intron | 50.0% |
| CTAGTGAGACGATATGTGCC+TGG | + | chr1_1:80876735-80876754 | None:intergenic | 50.0% | |
| CAGGCACATATCGTCTCACT+AGG | - | chr1_1:80876733-80876752 | Msa0047810:intron | 50.0% | |
| !!! | TCGTCTCACTAGGTTTTGGG+TGG | - | chr1_1:80876743-80876762 | Msa0047810:intron | 50.0% |
| !!! | CGTCTCACTAGGTTTTGGGT+GGG | - | chr1_1:80876744-80876763 | Msa0047810:intron | 50.0% |
| TACCACGGTCGTGCCAAATA+TGG | - | chr1_1:80876877-80876896 | Msa0047810:intron | 50.0% | |
| GTTGGAACTGAACCCTTGAG+TGG | + | chr1_1:80877521-80877540 | None:intergenic | 50.0% | |
| CACATCTGGGGGAAAGTAGT+TGG | + | chr1_1:80877539-80877558 | None:intergenic | 50.0% | |
| CAACTACTTTCCCCCAGATG+TGG | - | chr1_1:80877537-80877556 | Msa0047810:CDS | 50.0% | |
| GAAGACCCATTGAAGCTCAC+AGG | - | chr1_1:80877575-80877594 | Msa0047810:CDS | 50.0% | |
| GAGACTGATTGGAAAGAGCG+CGG | - | chr1_1:80877640-80877659 | Msa0047810:CDS | 50.0% | |
| GAAGCCTGTCTTCTTCAGGA+AGG | + | chr1_1:80877915-80877934 | None:intergenic | 50.0% | |
| TAGGATGGATGCCATGCAGA+TGG | - | chr1_1:80878023-80878042 | Msa0047810:intron | 50.0% | |
| !! | CTTGGTGCCACACCTAGAAA+TGG | - | chr1_1:80879000-80879019 | Msa0047810:intron | 50.0% |
| ! | GGTGATGCCATTTCTAGGTG+TGG | + | chr1_1:80879010-80879029 | None:intergenic | 50.0% |
| CACCTGAAGAGCTTTGCCAT+TGG | - | chr1_1:80879026-80879045 | Msa0047810:intron | 50.0% | |
| !! | CCTAAGGTCATTTTGAGCCG+TGG | + | chr1_1:80879501-80879520 | None:intergenic | 50.0% |
| CCACGGCTCAAAATGACCTT+AGG | - | chr1_1:80879498-80879517 | Msa0047810:intron | 50.0% | |
| TACTCAGCAGCTAGGCAGTT+AGG | + | chr1_1:80879571-80879590 | None:intergenic | 50.0% | |
| GGCTACAATACTCAGCAGCT+AGG | + | chr1_1:80879579-80879598 | None:intergenic | 50.0% | |
| ! | CTGAGTATTGTAGCCTGTCG+TGG | - | chr1_1:80879584-80879603 | Msa0047810:intron | 50.0% |
| TTGACTTTACCGCCACCATC+TGG | - | chr1_1:80879871-80879890 | Msa0047810:intron | 50.0% | |
| AGAGATGAGTCTCCAGATGG+TGG | + | chr1_1:80879886-80879905 | None:intergenic | 50.0% | |
| CGAAGAGATGAGTCTCCAGA+TGG | + | chr1_1:80879889-80879908 | None:intergenic | 50.0% | |
| ATCTCTCTCGTCAAGCTCAG+CGG | + | chr1_1:80880004-80880023 | None:intergenic | 50.0% | |
| CAAGCGCCTAGAGATGCTTA+TGG | - | chr1_1:80880044-80880063 | Msa0047810:CDS | 50.0% | |
| GGGGACTGATGTGCCGAAAT+CGG | + | chr1_1:80875194-80875213 | None:intergenic | 55.0% | |
| GCTTGGAAAACGTCGCCGTT+TGG | + | chr1_1:80875229-80875248 | None:intergenic | 55.0% | |
| ACGTCAACGCACGTGACCAA+TGG | - | chr1_1:80875302-80875321 | Msa0047810:CDS | 55.0% | |
| CGTCAACGCACGTGACCAAT+GGG | - | chr1_1:80875303-80875322 | Msa0047810:CDS | 55.0% | |
| ACAAGCGTAGTAGAGAGCGG+TGG | + | chr1_1:80875332-80875351 | None:intergenic | 55.0% | |
| CTCTACTACGCTTGTCTCGC+CGG | - | chr1_1:80875337-80875356 | Msa0047810:CDS | 55.0% | |
| TGTCCCGCCAATTCGCATTC+CGG | - | chr1_1:80875544-80875563 | Msa0047810:CDS | 55.0% | |
| TCCACCGGAATGCGAATTGG+CGG | + | chr1_1:80875551-80875570 | None:intergenic | 55.0% | |
| GTGCCTGACGAGTCTTACCA+CGG | - | chr1_1:80876862-80876881 | Msa0047810:intron | 55.0% | |
| AGCCATATTTGGCACGACCG+TGG | + | chr1_1:80876882-80876901 | None:intergenic | 55.0% | |
| ACGGTCGTGCCAAATATGGC+TGG | - | chr1_1:80876881-80876900 | Msa0047810:intron | 55.0% | |
| GCAGGAAGCCTGTCTTCTTC+AGG | + | chr1_1:80877919-80877938 | None:intergenic | 55.0% | |
| AGGATTCTACGCAAGGCTGC+AGG | + | chr1_1:80877937-80877956 | None:intergenic | 55.0% | |
| CAGGTACACCGATCGTTTGC+AGG | - | chr1_1:80878812-80878831 | Msa0047810:intron | 55.0% | |
| GTTTCCTCTTAAGCGTGCGG+TGG | - | chr1_1:80878970-80878989 | Msa0047810:intron | 55.0% | |
| ! | GATGAGTCTCCAGATGGTGG+CGG | + | chr1_1:80879883-80879902 | None:intergenic | 55.0% |
| !! | GAAGGTAACGGAGACGGTCG+AGG | + | chr1_1:80875267-80875286 | None:intergenic | 60.0% |
| AGAGAGCGGTGGAGTCCCAT+TGG | + | chr1_1:80875321-80875340 | None:intergenic | 60.0% | |
| GAAGCATACGAGCGGCATCG+AGG | + | chr1_1:80875366-80875385 | None:intergenic | 60.0% | |
| CCACCGGAATGCGAATTGGC+GGG | + | chr1_1:80875550-80875569 | None:intergenic | 60.0% | |
| CGACCGTGGTAAGACTCGTC+AGG | + | chr1_1:80876868-80876887 | None:intergenic | 60.0% | |
| TCAGCCACCGCACGCTTAAG+AGG | + | chr1_1:80878977-80878996 | None:intergenic | 60.0% | |
| ACAACTGTCCCGAGCATGCC+TGG | - | chr1_1:80879910-80879929 | Msa0047810:CDS | 60.0% | |
| CAACTGTCCCGAGCATGCCT+GGG | - | chr1_1:80879911-80879930 | Msa0047810:CDS | 60.0% | |
| AGGGAAGACCCAGGCATGCT+CGG | + | chr1_1:80879922-80879941 | None:intergenic | 60.0% | |
| ! | GTTTTCCAAGCCTCCCGCGC+CGG | - | chr1_1:80875238-80875257 | Msa0047810:three_prime_UTR | 65.0% |
| ! | ACGAGCGGCATCGAGGTGAC+CGG | + | chr1_1:80875359-80875378 | None:intergenic | 65.0% |
| CCCGCCAATTCGCATTCCGG+TGG | - | chr1_1:80875547-80875566 | Msa0047810:CDS | 65.0% | |
| GCGTGCGGTGGCTGATGTCT+TGG | - | chr1_1:80878982-80879001 | Msa0047810:intron | 65.0% | |
| GGGAAGACCCAGGCATGCTC+GGG | + | chr1_1:80879921-80879940 | None:intergenic | 65.0% | |
| ACGGAGACGGTCGAGGTCGC+CGG | + | chr1_1:80875260-80875279 | None:intergenic | 70.0% | |
| ! | ACGGTCGAGGTCGCCGGCGC+GGG | + | chr1_1:80875254-80875273 | None:intergenic | 80.0% |
| ! | GACGGTCGAGGTCGCCGGCG+CGG | + | chr1_1:80875255-80875274 | None:intergenic | 80.0% |
| ! | GGTCGCCGGCGCGGGAGGCT+TGG | + | chr1_1:80875246-80875265 | None:intergenic | 85.0% |
| ! | GTCGAGGTCGCCGGCGCGGG+AGG | + | chr1_1:80875251-80875270 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 80875100 | 80880380 | 80875100 | ID=Msa0047810;Name=Msa0047810 |
| chr1_1 | mRNA | 80875100 | 80880380 | 80875100 | ID=Msa0047810-mRNA-1;Parent=Msa0047810;Name=Msa0047810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|1|1|1|1|1|5|174|597 |
| chr1_1 | exon | 80875100 | 80875703 | 80875100 | ID=Msa0047810-mRNA-1:exon:27933;Parent=Msa0047810-mRNA-1 |
| chr1_1 | exon | 80876415 | 80876548 | 80876415 | ID=Msa0047810-mRNA-1:exon:27932;Parent=Msa0047810-mRNA-1 |
| chr1_1 | exon | 80876629 | 80876665 | 80876629 | ID=Msa0047810-mRNA-1:exon:27931;Parent=Msa0047810-mRNA-1 |
| chr1_1 | exon | 80877212 | 80877971 | 80877212 | ID=Msa0047810-mRNA-1:exon:27930;Parent=Msa0047810-mRNA-1 |
| chr1_1 | exon | 80879897 | 80880380 | 80879897 | ID=Msa0047810-mRNA-1:exon:27929;Parent=Msa0047810-mRNA-1 |
| chr1_1 | five_prime_UTR | 80880330 | 80880380 | 80880330 | ID=Msa0047810-mRNA-1:five_prime_utr;Parent=Msa0047810-mRNA-1 |
| chr1_1 | CDS | 80879897 | 80880329 | 80879897 | ID=Msa0047810-mRNA-1:cds;Parent=Msa0047810-mRNA-1 |
| chr1_1 | CDS | 80877212 | 80877971 | 80877212 | ID=Msa0047810-mRNA-1:cds;Parent=Msa0047810-mRNA-1 |
| chr1_1 | CDS | 80876629 | 80876665 | 80876629 | ID=Msa0047810-mRNA-1:cds;Parent=Msa0047810-mRNA-1 |
| chr1_1 | CDS | 80876415 | 80876548 | 80876415 | ID=Msa0047810-mRNA-1:cds;Parent=Msa0047810-mRNA-1 |
| chr1_1 | CDS | 80875274 | 80875703 | 80875274 | ID=Msa0047810-mRNA-1:cds;Parent=Msa0047810-mRNA-1 |
| chr1_1 | three_prime_UTR | 80875100 | 80875273 | 80875100 | ID=Msa0047810-mRNA-1:three_prime_utr;Parent=Msa0047810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
