Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513450 | XP_013461190.1 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513450 | sp|Q9SJ85|Y2474_ARATH | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513450 | A0A072UZJ2 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0513450 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047810 | Msa0513450 | 0.875697 | 2.512547e-68 | -8.615850e-47 |
| Msa0229850 | Msa0513450 | 0.906837 | 9.682033e-81 | -8.615850e-47 |
| Msa0513450 | Msa0526620 | 0.908694 | 1.291250e-81 | -8.615850e-47 |
| Msa0513450 | Msa1101530 | 0.826580 | 2.508888e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513450 | MtrunA17_Chr3g0120891 | 97.956 | 587 | 6 | 1 | 1 | 587 | 1 | 581 | 0.0 | 1183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513450 | AT2G04740.1 | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Msa0513450 | AT2G04740.4 | 71.144 | 402 | 103 | 3 | 16 | 412 | 26 | 419 | 0.0 | 587 |
| Msa0513450 | AT2G04740.3 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
| Msa0513450 | AT2G04740.2 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
Find 137 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCTTGATCATTATTT+AGG | 0.129432 | 3_4:-63678954 | None:intergenic |
| ATAATTCATCTTTCCCTTCA+TGG | 0.209480 | 3_4:-63677189 | None:intergenic |
| TTGATGATTTACGTGATAAA+TGG | 0.228719 | 3_4:+63678980 | Msa0513450:CDS |
| TCGATGCTAGAATAACTTTA+TGG | 0.240325 | 3_4:-63677123 | None:intergenic |
| CCAATCACCGCTGTAATTTC+AGG | 0.266996 | 3_4:+63679159 | Msa0513450:CDS |
| GACTTAGACCCTTCCGATTT+CGG | 0.267048 | 3_4:+63674218 | Msa0513450:CDS |
| GGCAAATAATTCAAAATTAC+AGG | 0.300060 | 3_4:-63678836 | None:intergenic |
| TCCGGTGGATTTCAGTTTCC+TGG | 0.303043 | 3_4:+63674602 | Msa0513450:CDS |
| CTTCAGGTGATGCCATTTCT+AGG | 0.304251 | 3_4:-63678028 | None:intergenic |
| TATGAGAATGGTCAAGATAA+TGG | 0.315888 | 3_4:+63676998 | Msa0513450:CDS |
| TTGCCGATACAAAAGAATTC+CGG | 0.318461 | 3_4:+63678854 | Msa0513450:CDS |
| ACAACTGTCCCGAGCATGCC+TGG | 0.328006 | 3_4:+63678925 | Msa0513450:CDS |
| AACCAATGGCAAAGCTCTTC+AGG | 0.332097 | 3_4:-63678044 | None:intergenic |
| GGCGAACAAACTGTAATTTC+AGG | 0.337080 | 3_4:+63679180 | Msa0513450:CDS |
| TGCTCCGAACACACGTTTGA+CGG | 0.338738 | 3_4:+63674443 | Msa0513450:CDS |
| TAGAGAGCAGATGCTAAGTT+AGG | 0.345187 | 3_4:+63679282 | Msa0513450:three_prime_UTR |
| CTTGGAAAACGTCGCCGTTT+GGG | 0.353575 | 3_4:-63674265 | None:intergenic |
| TTACTCTGCTCTTAATTTGA+AGG | 0.354172 | 3_4:+63674478 | Msa0513450:CDS |
| CTGAATAAAAGAAATGTATA+AGG | 0.355396 | 3_4:-63676727 | None:intergenic |
| TATGACCCTGTGAGCTTCAA+TGG | 0.355838 | 3_4:-63676597 | None:intergenic |
| ACATCAGCAAGATCATTTAG+AGG | 0.359931 | 3_4:-63677067 | None:intergenic |
| ATTTCCTTGATCATTATTTA+GGG | 0.362505 | 3_4:-63678953 | None:intergenic |
| GCAGGAAGCCTGTCTTCTTC+AGG | 0.365112 | 3_4:-63676932 | None:intergenic |
| TGTCCCGCCAATTCGCATTC+CGG | 0.366372 | 3_4:+63674584 | Msa0513450:CDS |
| CTGCTCTTAATTTGAAGGTT+AGG | 0.367208 | 3_4:+63674483 | Msa0513450:CDS |
| TGCCGATACAAAAGAATTCC+GGG | 0.375788 | 3_4:+63678855 | Msa0513450:CDS |
| CCTGAAATTACAGCGGTGAT+TGG | 0.383019 | 3_4:-63679159 | None:intergenic |
| GCTTGGAAAACGTCGCCGTT+TGG | 0.392528 | 3_4:-63674266 | None:intergenic |
| AGATAATGGAATTGATGAAT+TGG | 0.393017 | 3_4:+63677012 | Msa0513450:CDS |
| CAGGTACACCGATCGTTTGC+AGG | 0.393496 | 3_4:+63677828 | Msa0513450:intron |
| AGAGATTGCTGTGGATGATA+TGG | 0.401698 | 3_4:+63676757 | Msa0513450:CDS |
| TCAAATTCCACTTATGAGAA+TGG | 0.404180 | 3_4:+63676986 | Msa0513450:CDS |
| ACGGTCGAGGTCGCCGGCGC+GGG | 0.409392 | 3_4:-63674291 | None:intergenic |
| ATCTTGACCATTCTCATAAG+TGG | 0.413032 | 3_4:-63676993 | None:intergenic |
| GGTCGCCGGCGCGGGAGGCT+TGG | 0.425592 | 3_4:-63674283 | None:intergenic |
| CAAGCGCCTAGAGATGCTTA+TGG | 0.430680 | 3_4:+63679059 | Msa0513450:CDS |
| TTGACTTTACCGCCACCATC+TGG | 0.432801 | 3_4:+63678886 | Msa0513450:CDS |
| TCAGCCACCGCACGCTTAAG+AGG | 0.432979 | 3_4:-63677990 | None:intergenic |
| GCAGGAAATAAATCCAGATC+AGG | 0.444091 | 3_4:+63677846 | Msa0513450:CDS |
| TTGCTTGGAGTGCTTAAGTT+GGG | 0.445475 | 3_4:+63679305 | Msa0513450:three_prime_UTR |
| GGGGACTGATGTGCCGAAAT+CGG | 0.446957 | 3_4:-63674231 | None:intergenic |
| CTCTACTACGCTTGTCTCGC+CGG | 0.450922 | 3_4:+63674377 | Msa0513450:CDS |
| AAATCCACCGGAATGCGAAT+TGG | 0.454070 | 3_4:-63674591 | None:intergenic |
| CGTCAACGCACGTGACCAAT+GGG | 0.454729 | 3_4:+63674343 | Msa0513450:CDS |
| ACGTCAACGCACGTGACCAA+TGG | 0.460070 | 3_4:+63674342 | Msa0513450:CDS |
| CTCATAAGTGGAATTTGAAA+GGG | 0.462115 | 3_4:-63676981 | None:intergenic |
| AGGGAAGACCCAGGCATGCT+CGG | 0.478303 | 3_4:-63678934 | None:intergenic |
| GTTGCTTGGAGTGCTTAAGT+TGG | 0.479363 | 3_4:+63679304 | Msa0513450:three_prime_UTR |
| CTTGGTGCCACACCTAGAAA+TGG | 0.481090 | 3_4:+63678016 | Msa0513450:CDS |
| GTCACCGTCAAACGTGTGTT+CGG | 0.482387 | 3_4:-63674447 | None:intergenic |
| AGATGCTAAGTTAGGTTGCT+TGG | 0.482412 | 3_4:+63679290 | Msa0513450:three_prime_UTR |
| ACGGAGACGGTCGAGGTCGC+CGG | 0.484646 | 3_4:-63674297 | None:intergenic |
| CGTTAACGCCGCATTCAAGA+AGG | 0.487687 | 3_4:-63674322 | None:intergenic |
| AGCAAGACTCTCACGTATGA+AGG | 0.487920 | 3_4:+63677162 | Msa0513450:CDS |
| TCTCATAAGTGGAATTTGAA+AGG | 0.493040 | 3_4:-63676982 | None:intergenic |
| GAATTGATGAATTGGTATCT+AGG | 0.495038 | 3_4:+63677020 | Msa0513450:CDS |
| AACACACGTTTGACGGTGAC+CGG | 0.496734 | 3_4:+63674450 | Msa0513450:CDS |
| GCAGAGCATGAAAAGTCATC+AGG | 0.503518 | 3_4:+63679087 | Msa0513450:CDS |
| GCGTGCGGTGGCTGATGTCT+TGG | 0.504420 | 3_4:+63677998 | Msa0513450:CDS |
| AGGATTCTACGCAAGGCTGC+AGG | 0.504870 | 3_4:-63676950 | None:intergenic |
| TCTTCCCTAAATAATGATCA+AGG | 0.508410 | 3_4:+63678949 | Msa0513450:CDS |
| GCTCGTATGCTTCTCGAAAA+CGG | 0.515902 | 3_4:+63674413 | Msa0513450:CDS |
| CCCGCCAATTCGCATTCCGG+TGG | 0.516474 | 3_4:+63674587 | Msa0513450:CDS |
| GGGAAGACCCAGGCATGCTC+GGG | 0.516596 | 3_4:-63678933 | None:intergenic |
| CAACTGTCCCGAGCATGCCT+GGG | 0.516727 | 3_4:+63678926 | Msa0513450:CDS |
| CGTATGAAGGATTTCCATGA+AGG | 0.522102 | 3_4:+63677175 | Msa0513450:CDS |
| ATGACCCTGTGAGCTTCAAT+GGG | 0.523451 | 3_4:-63676596 | None:intergenic |
| TAATTCAAAATTACAGGCAA+TGG | 0.524676 | 3_4:-63678830 | None:intergenic |
| TGATGAATTGGTATCTAGGA+TGG | 0.526622 | 3_4:+63677024 | Msa0513450:CDS |
| GTCGAGGTCGCCGGCGCGGG+AGG | 0.526895 | 3_4:-63674288 | None:intergenic |
| CTAGAATAACTTTATGGCAG+CGG | 0.541146 | 3_4:-63677117 | None:intergenic |
| CAACAACCATAAGCATCTCT+AGG | 0.542190 | 3_4:-63679065 | None:intergenic |
| GGTGATGCCATTTCTAGGTG+TGG | 0.543342 | 3_4:-63678023 | None:intergenic |
| GAACTCTGCAACGGATTCAA+AGG | 0.544374 | 3_4:-63674539 | None:intergenic |
| ATTTATTTCCTGCAAACGAT+CGG | 0.548048 | 3_4:-63677836 | None:intergenic |
| TCCACCGGAATGCGAATTGG+CGG | 0.548080 | 3_4:-63674588 | None:intergenic |
| CACCTGAAGAGCTTTGCCAT+TGG | 0.550101 | 3_4:+63678042 | Msa0513450:CDS |
| CCACCGGAATGCGAATTGGC+GGG | 0.551808 | 3_4:-63674587 | None:intergenic |
| GAAGGTAACGGAGACGGTCG+AGG | 0.554738 | 3_4:-63674304 | None:intergenic |
| TGTATAAGGCTACAAAGTGC+AGG | 0.556046 | 3_4:-63676713 | None:intergenic |
| GAAGACCCATTGAAGCTCAC+AGG | 0.556477 | 3_4:+63676591 | Msa0513450:CDS |
| ATAGGTATTTCATCCACTCA+AGG | 0.558796 | 3_4:+63676521 | Msa0513450:intron |
| TGCGCATAATCTTAACAAGA+AGG | 0.558852 | 3_4:+63674168 | Msa0513450:five_prime_UTR |
| AGAGAGCGGTGGAGTCCCAT+TGG | 0.560808 | 3_4:-63674358 | None:intergenic |
| TATCCCTTCCTGAAGAAGAC+AGG | 0.561398 | 3_4:+63676924 | Msa0513450:CDS |
| ACTGATGTGCCGAAATCGGA+AGG | 0.562037 | 3_4:-63674227 | None:intergenic |
| ACGAGCGGCATCGAGGTGAC+CGG | 0.567999 | 3_4:-63674396 | None:intergenic |
| CATCTGCTCTCTATAAACTA+CGG | 0.577759 | 3_4:-63679272 | None:intergenic |
| CGGTGAAGTAAGATTTGCAC+GGG | 0.578959 | 3_4:+63676676 | Msa0513450:CDS |
| GACGGTCGAGGTCGCCGGCG+CGG | 0.580861 | 3_4:-63674292 | None:intergenic |
| GTAAAGTCAACAGCATTGCC+CGG | 0.581664 | 3_4:-63678873 | None:intergenic |
| CTATCTATATTATTATTACA+CGG | 0.582185 | 3_4:+63679373 | Msa0513450:three_prime_UTR |
| TAGGATGGATGCCATGCAGA+TGG | 0.591367 | 3_4:+63677039 | Msa0513450:CDS |
| TAGGTATTTCATCCACTCAA+GGG | 0.593239 | 3_4:+63676522 | Msa0513450:intron |
| AATTTGAAAGGGCAGTCAGA+AGG | 0.595225 | 3_4:-63676970 | None:intergenic |
| ACCAGGAAACTGAAATCCAC+CGG | 0.595513 | 3_4:-63674603 | None:intergenic |
| AAGCCTGTCTTCTTCAGGAA+GGG | 0.600256 | 3_4:-63676927 | None:intergenic |
| AAACAGTGTTCAGAAATCTA+CGG | 0.604061 | 3_4:-63679216 | None:intergenic |
| AGTCAGAAGGATTCTACGCA+AGG | 0.604259 | 3_4:-63676957 | None:intergenic |
| ACAGGGTCATATTAAGTGCA+AGG | 0.612478 | 3_4:+63676609 | Msa0513450:CDS |
| AAGACCCATTGAAGCTCACA+GGG | 0.615492 | 3_4:+63676592 | Msa0513450:CDS |
| GAAGCCTGTCTTCTTCAGGA+AGG | 0.615749 | 3_4:-63676928 | None:intergenic |
| ATATAGACAATTCTCAAAAG+CGG | 0.616785 | 3_4:+63676885 | Msa0513450:CDS |
| CTCCGTTACCTTCTTGAATG+CGG | 0.621540 | 3_4:+63674314 | Msa0513450:CDS |
| CGAAGAGATGAGTCTCCAGA+TGG | 0.622590 | 3_4:-63678901 | None:intergenic |
| TAGAGGTTTAGCCATCTGCA+TGG | 0.622841 | 3_4:-63677050 | None:intergenic |
| ATCTCTCTCGTCAAGCTCAG+CGG | 0.623099 | 3_4:-63679016 | None:intergenic |
| CGTGTTCTTCAAGACAAGGA+AGG | 0.623560 | 3_4:-63677222 | None:intergenic |
| ATTCAAGAAGGTAACGGAGA+CGG | 0.624043 | 3_4:-63674310 | None:intergenic |
| GATGTTTCCTCTTAAGCGTG+CGG | 0.625855 | 3_4:+63677983 | Msa0513450:CDS |
| GTTTCCTCTTAAGCGTGCGG+TGG | 0.625968 | 3_4:+63677986 | Msa0513450:CDS |
| TGCAACGGATTCAAAGGAGG+AGG | 0.631815 | 3_4:-63674533 | None:intergenic |
| CTCTGCAACGGATTCAAAGG+AGG | 0.633098 | 3_4:-63674536 | None:intergenic |
| AGAGATGAGTCTCCAGATGG+TGG | 0.634349 | 3_4:-63678898 | None:intergenic |
| ACAAGCGTAGTAGAGAGCGG+TGG | 0.635729 | 3_4:-63674369 | None:intergenic |
| GTATGAAGGATTTCCATGAA+GGG | 0.635765 | 3_4:+63677176 | Msa0513450:CDS |
| TGAAGAACACGACATGAGTG+TGG | 0.636750 | 3_4:+63677234 | Msa0513450:CDS |
| GATGAGTCTCCAGATGGTGG+CGG | 0.638331 | 3_4:-63678895 | None:intergenic |
| GTGATTGGAGAGAAAGTCAA+GGG | 0.639852 | 3_4:-63679144 | None:intergenic |
| TCATTATTTAGGGAAGACCC+AGG | 0.639945 | 3_4:-63678943 | None:intergenic |
| CGCCGCATTCAAGAAGGTAA+CGG | 0.641866 | 3_4:-63674316 | None:intergenic |
| GTTGGAACTGAACCCTTGAG+TGG | 0.645789 | 3_4:-63676534 | None:intergenic |
| GAGACTGATTGGAAAGAGCG+CGG | 0.646559 | 3_4:+63676656 | Msa0513450:CDS |
| AGACAGATTAGAGATTGCTG+TGG | 0.649010 | 3_4:+63676748 | Msa0513450:CDS |
| GGTGATTGGAGAGAAAGTCA+AGG | 0.656518 | 3_4:-63679145 | None:intergenic |
| ATGTCGTGTTCTTCAAGACA+AGG | 0.664235 | 3_4:-63677226 | None:intergenic |
| CTGATGTGCCGAAATCGGAA+GGG | 0.674283 | 3_4:-63674226 | None:intergenic |
| TCACGAAGAGAACTCTGCAA+CGG | 0.676952 | 3_4:-63674548 | None:intergenic |
| TGTCTGCTAGCATTAACCAA+TGG | 0.682080 | 3_4:-63678058 | None:intergenic |
| ATGAGTTTCATCGACGACGG+CGG | 0.684567 | 3_4:+63674191 | Msa0513450:CDS |
| AGGATGAGTTTCATCGACGA+CGG | 0.689914 | 3_4:+63674188 | Msa0513450:exon |
| GCGGTGAAGTAAGATTTGCA+CGG | 0.696641 | 3_4:+63676675 | Msa0513450:CDS |
| GAGACAAGCGTAGTAGAGAG+CGG | 0.707889 | 3_4:-63674372 | None:intergenic |
| TTGTTCGCCTGAAATTACAG+CGG | 0.710853 | 3_4:-63679166 | None:intergenic |
| TAAGAGCAGAGTAATGACAC+CGG | 0.716123 | 3_4:-63674469 | None:intergenic |
| GAAGCATACGAGCGGCATCG+AGG | 0.723315 | 3_4:-63674403 | None:intergenic |
| ATAAAGTTATTCTAGCATCG+AGG | 0.746606 | 3_4:+63677125 | Msa0513450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTTGATTT+AGG | + | chr3_4:63674704-63674723 | Msa0513450:intron | 10.0% |
| !! | ATTATTAAAAGATATTTGAT+AGG | + | chr3_4:63675513-63675532 | Msa0513450:intron | 10.0% |
| !!! | TTTATTTTATTATAGTATTC+AGG | - | chr3_4:63675706-63675725 | None:intergenic | 10.0% |
| !! | ATAAATACAACATTATTATT+TGG | - | chr3_4:63676467-63676486 | None:intergenic | 10.0% |
| !!! | AATTTTGAAATTGAAAATAT+CGG | + | chr3_4:63677309-63677328 | Msa0513450:intron | 10.0% |
| !! | GTATTATTATTCTATAAATT+TGG | + | chr3_4:63677399-63677418 | Msa0513450:intron | 10.0% |
| !!! | TTTCAAAATATTTTTTAAAC+AGG | + | chr3_4:63677926-63677945 | Msa0513450:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+AGG | + | chr3_4:63678392-63678411 | Msa0513450:intron | 10.0% |
| !! | ATATTATTCATAGATGATTA+TGG | + | chr3_4:63674863-63674882 | Msa0513450:intron | 15.0% |
| !! | TTCTCAATGATAAATTAAAT+AGG | + | chr3_4:63674967-63674986 | Msa0513450:intron | 15.0% |
| !! | TCTCAATGATAAATTAAATA+GGG | + | chr3_4:63674968-63674987 | Msa0513450:intron | 15.0% |
| !! | AAAGTTCAATACTATAATAA+GGG | - | chr3_4:63676214-63676233 | None:intergenic | 15.0% |
| !! | AAAAGTTCAATACTATAATA+AGG | - | chr3_4:63676215-63676234 | None:intergenic | 15.0% |
| !! | AATAATGTTGTATTTATACA+TGG | + | chr3_4:63676470-63676489 | Msa0513450:intron | 15.0% |
| !! | AAATCATTTAACTATAAATC+AGG | - | chr3_4:63677430-63677449 | None:intergenic | 15.0% |
| !!! | ACTTTTAAAAGAAATCTTAA+TGG | - | chr3_4:63677883-63677902 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTCTTTTAAAAG+TGG | + | chr3_4:63677882-63677901 | Msa0513450:intron | 15.0% |
| !!! | AAATATTTCAATTTTGGTTT+AGG | - | chr3_4:63678333-63678352 | None:intergenic | 15.0% |
| !!! | ATTGGTAAATATTTCAATTT+TGG | - | chr3_4:63678339-63678358 | None:intergenic | 15.0% |
| !! | GACAAATAATTGTTTGTAAA+GGG | + | chr3_4:63675056-63675075 | Msa0513450:intron | 20.0% |
| !! | TTAAACTATGAAAAACTAGT+AGG | - | chr3_4:63675545-63675564 | None:intergenic | 20.0% |
| !!! | TATTATAGTATTCAGGTTTT+TGG | - | chr3_4:63675699-63675718 | None:intergenic | 20.0% |
| !!! | TTTGTTTTATTTCTCCTAAA+AGG | + | chr3_4:63675807-63675826 | Msa0513450:intron | 20.0% |
| !!! | TTGTTTTATTTCTCCTAAAA+GGG | + | chr3_4:63675808-63675827 | Msa0513450:intron | 20.0% |
| !! | AGAGAATTTAGATATATTGT+CGG | - | chr3_4:63676094-63676113 | None:intergenic | 20.0% |
| !!! | TCAAACTTTTTCTTGAAAAA+TGG | - | chr3_4:63676638-63676657 | None:intergenic | 20.0% |
| !! | CTGAATAAAAGAAATGTATA+AGG | - | chr3_4:63676730-63676749 | None:intergenic | 20.0% |
| !! | ATAGAATAATAATACAGTCA+CGG | - | chr3_4:63677394-63677413 | None:intergenic | 20.0% |
| !! | ACTTAAAATCTTTAGCAAAT+TGG | - | chr3_4:63677557-63677576 | None:intergenic | 20.0% |
| !! | TTATTCAATCTTTAGCAAAT+TGG | - | chr3_4:63677595-63677614 | None:intergenic | 20.0% |
| !! | TTTGAAAATCAGACAATAAA+AGG | - | chr3_4:63677913-63677932 | None:intergenic | 20.0% |
| !! | TAAAATAAGTGGAAATGAAA+AGG | - | chr3_4:63678193-63678212 | None:intergenic | 20.0% |
| !!! | TACTTATTAAAGGTTTTATC+TGG | + | chr3_4:63678269-63678288 | Msa0513450:intron | 20.0% |
| !! | ATTTCCTTGATCATTATTTA+GGG | - | chr3_4:63678956-63678975 | None:intergenic | 20.0% |
| !! | AAGAATTTGATTCTACCTTT+TGG | + | chr3_4:63674626-63674645 | Msa0513450:intron | 25.0% |
| !! | ATTCTACCTTTTGGATTAAT+TGG | + | chr3_4:63674635-63674654 | Msa0513450:intron | 25.0% |
| ! | CATAAACCAATTAATCCAAA+AGG | - | chr3_4:63674644-63674663 | None:intergenic | 25.0% |
| !! | ATTGGTTTATGAGAATGTTA+AGG | + | chr3_4:63674653-63674672 | Msa0513450:intron | 25.0% |
| !! | AATGCACATTTTCATAACTT+AGG | - | chr3_4:63674834-63674853 | None:intergenic | 25.0% |
| ! | TTATTCATAGATGATTATGG+AGG | + | chr3_4:63674866-63674885 | Msa0513450:intron | 25.0% |
| !! | TTAGAAGCTCACTTTAATTT+AGG | + | chr3_4:63674924-63674943 | Msa0513450:intron | 25.0% |
| ! | CAATGATAAATTAAATAGGG+AGG | + | chr3_4:63674971-63674990 | Msa0513450:intron | 25.0% |
| !! | TAAATAGGGAGGATTTTATA+AGG | + | chr3_4:63674982-63675001 | Msa0513450:intron | 25.0% |
| ! | AAAGGAAATCATTAATGCAT+GGG | + | chr3_4:63675005-63675024 | Msa0513450:intron | 25.0% |
| !! | TGTAAAGGGTCTTATATTTA+CGG | + | chr3_4:63675034-63675053 | Msa0513450:intron | 25.0% |
| ! | GGACAAATAATTGTTTGTAA+AGG | + | chr3_4:63675055-63675074 | Msa0513450:intron | 25.0% |
| ! | GAGAATTTAGATATATTGTC+GGG | - | chr3_4:63676093-63676112 | None:intergenic | 25.0% |
| ! | TCTAATATTCTTACACAACA+AGG | + | chr3_4:63676290-63676309 | Msa0513450:intron | 25.0% |
| ! | AACCATCAAATGATAAAACA+AGG | + | chr3_4:63676333-63676352 | Msa0513450:intron | 25.0% |
| ! | ATATAGACAATTCTCAAAAG+CGG | + | chr3_4:63676885-63676904 | Msa0513450:CDS | 25.0% |
| !!! | AGATAATGGAATTGATGAAT+TGG | + | chr3_4:63677012-63677031 | Msa0513450:CDS | 25.0% |
| !! | TTTGAAATTGAAAATATCGG+AGG | + | chr3_4:63677312-63677331 | Msa0513450:intron | 25.0% |
| ! | TTGAAATTGAAAATATCGGA+GGG | + | chr3_4:63677313-63677332 | Msa0513450:intron | 25.0% |
| ! | TAGAATAATAATACAGTCAC+GGG | - | chr3_4:63677393-63677412 | None:intergenic | 25.0% |
| !! | TTACATAAGATGATTTGCAA+TGG | + | chr3_4:63677469-63677488 | Msa0513450:intron | 25.0% |
| ! | CAGATTGAAAAACAAAAACT+AGG | - | chr3_4:63677507-63677526 | None:intergenic | 25.0% |
| !!! | CTAGTTTTTGTTTTTCAATC+TGG | + | chr3_4:63677505-63677524 | Msa0513450:intron | 25.0% |
| ! | AACAAACATGCATAAAACTA+AGG | - | chr3_4:63677639-63677658 | None:intergenic | 25.0% |
| ! | TTTATCCTGTATTTCTTTGT+TGG | + | chr3_4:63677803-63677822 | Msa0513450:intron | 25.0% |
| !!! | AATATTTTTTAAACAGGCTG+AGG | + | chr3_4:63677932-63677951 | Msa0513450:intron | 25.0% |
| ! | ACCTTTAATAAGTAACTACT+GGG | - | chr3_4:63678263-63678282 | None:intergenic | 25.0% |
| ! | AACCTTTAATAAGTAACTAC+TGG | - | chr3_4:63678264-63678283 | None:intergenic | 25.0% |
| !!! | TATTAAAGGTTTTATCTGGA+TGG | + | chr3_4:63678273-63678292 | Msa0513450:intron | 25.0% |
| ! | CCTTAATATACTTCTAACAA+TGG | - | chr3_4:63678700-63678719 | None:intergenic | 25.0% |
| !! | CCATTGTTAGAAGTATATTA+AGG | + | chr3_4:63678697-63678716 | Msa0513450:intron | 25.0% |
| ! | AGATTAAACAAGATATGATC+TGG | - | chr3_4:63678741-63678760 | None:intergenic | 25.0% |
| ! | TAATTCAAAATTACAGGCAA+TGG | - | chr3_4:63678833-63678852 | None:intergenic | 25.0% |
| ! | GGCAAATAATTCAAAATTAC+AGG | - | chr3_4:63678839-63678858 | None:intergenic | 25.0% |
| ! | GATTTCCTTGATCATTATTT+AGG | - | chr3_4:63678957-63678976 | None:intergenic | 25.0% |
| !! | TTGATGATTTACGTGATAAA+TGG | + | chr3_4:63678980-63678999 | Msa0513450:CDS | 25.0% |
| ! | TTACTCTGCTCTTAATTTGA+AGG | + | chr3_4:63674478-63674497 | Msa0513450:CDS | 30.0% |
| TTTATGAGAATGTTAAGGTG+TGG | + | chr3_4:63674658-63674677 | Msa0513450:intron | 30.0% | |
| !! | GTGGAAGCTTTTTCTAATTA+AGG | + | chr3_4:63674677-63674696 | Msa0513450:intron | 30.0% |
| GAAAGGAAATCATTAATGCA+TGG | + | chr3_4:63675004-63675023 | Msa0513450:intron | 30.0% | |
| ! | TTGTAAAGGGTCTTATGATT+AGG | + | chr3_4:63675069-63675088 | Msa0513450:intron | 30.0% |
| ! | TGTAAAGGGTCTTATGATTA+GGG | + | chr3_4:63675070-63675089 | Msa0513450:intron | 30.0% |
| TGAGAATTGAAATGACTGAT+TGG | + | chr3_4:63675165-63675184 | Msa0513450:intron | 30.0% | |
| ! | CATAAGTTTAGCTTCATAGT+TGG | + | chr3_4:63675351-63675370 | Msa0513450:intron | 30.0% |
| AAAAACCCACCAAAACAATA+TGG | + | chr3_4:63675624-63675643 | Msa0513450:intron | 30.0% | |
| AGCATTAGATATCTGATATC+AGG | - | chr3_4:63676054-63676073 | None:intergenic | 30.0% | |
| CATAAAACAATGAATCGAGT+AGG | + | chr3_4:63676260-63676279 | Msa0513450:intron | 30.0% | |
| TTCTTACACAACAAGGAATT+AGG | + | chr3_4:63676297-63676316 | Msa0513450:intron | 30.0% | |
| !!! | AGCCTTGTTTTATCATTTGA+TGG | - | chr3_4:63676338-63676357 | None:intergenic | 30.0% |
| TGTTGTATTTATACATGGTC+TGG | + | chr3_4:63676475-63676494 | Msa0513450:intron | 30.0% | |
| GTTGTATTTATACATGGTCT+GGG | + | chr3_4:63676476-63676495 | Msa0513450:intron | 30.0% | |
| ! | AGAAAAAGTTTGAGACTGAT+TGG | + | chr3_4:63676645-63676664 | Msa0513450:CDS | 30.0% |
| !!! | TCAAAAGCGGTTTATTTTAC+AGG | + | chr3_4:63676898-63676917 | Msa0513450:CDS | 30.0% |
| !!! | CAAAAGCGGTTTATTTTACA+GGG | + | chr3_4:63676899-63676918 | Msa0513450:CDS | 30.0% |
| CTCATAAGTGGAATTTGAAA+GGG | - | chr3_4:63676984-63677003 | None:intergenic | 30.0% | |
| TCTCATAAGTGGAATTTGAA+AGG | - | chr3_4:63676985-63677004 | None:intergenic | 30.0% | |
| TCAAATTCCACTTATGAGAA+TGG | + | chr3_4:63676986-63677005 | Msa0513450:CDS | 30.0% | |
| TATGAGAATGGTCAAGATAA+TGG | + | chr3_4:63676998-63677017 | Msa0513450:CDS | 30.0% | |
| GAATTGATGAATTGGTATCT+AGG | + | chr3_4:63677020-63677039 | Msa0513450:CDS | 30.0% | |
| TCGATGCTAGAATAACTTTA+TGG | - | chr3_4:63677126-63677145 | None:intergenic | 30.0% | |
| ATAAAGTTATTCTAGCATCG+AGG | + | chr3_4:63677125-63677144 | Msa0513450:CDS | 30.0% | |
| ATAATTCATCTTTCCCTTCA+TGG | - | chr3_4:63677192-63677211 | None:intergenic | 30.0% | |
| ATTTCAAAATTCCACAGTGA+AGG | - | chr3_4:63677300-63677319 | None:intergenic | 30.0% | |
| TAGTATGCCAATAATTACCA+CGG | + | chr3_4:63677339-63677358 | Msa0513450:intron | 30.0% | |
| TAAGTTACCGTGGTAATTAT+TGG | - | chr3_4:63677349-63677368 | None:intergenic | 30.0% | |
| ATGCATAAAACTAAGGCAAT+TGG | - | chr3_4:63677632-63677651 | None:intergenic | 30.0% | |
| ATAACAACACAAATATGACC+TGG | - | chr3_4:63677668-63677687 | None:intergenic | 30.0% | |
| ATTTATTTCCTGCAAACGAT+CGG | - | chr3_4:63677839-63677858 | None:intergenic | 30.0% | |
| TAAGATGAAGAAAGAGAGAT+TGG | - | chr3_4:63678101-63678120 | None:intergenic | 30.0% | |
| CTTTCTTCATCTTACATTGA+TGG | + | chr3_4:63678107-63678126 | Msa0513450:intron | 30.0% | |
| ! | ATAGGGATGTCTAAAATAAG+TGG | - | chr3_4:63678204-63678223 | None:intergenic | 30.0% |
| CTCTAGTAAGTAGTAACATA+GGG | - | chr3_4:63678221-63678240 | None:intergenic | 30.0% | |
| CCTTTAATAAGTAACTACTG+GGG | - | chr3_4:63678262-63678281 | None:intergenic | 30.0% | |
| GCATCTTAATTGTAGATCAT+TGG | - | chr3_4:63678357-63678376 | None:intergenic | 30.0% | |
| ! | TTTATGACTGCACATGTTTT+AGG | + | chr3_4:63678460-63678479 | Msa0513450:intron | 30.0% |
| TTGACTATTTGTTCATTTCC+AGG | + | chr3_4:63678770-63678789 | Msa0513450:intron | 30.0% | |
| TATTTGTTCATTTCCAGGTA+TGG | + | chr3_4:63678775-63678794 | Msa0513450:intron | 30.0% | |
| TCTTCCCTAAATAATGATCA+AGG | + | chr3_4:63678949-63678968 | Msa0513450:CDS | 30.0% | |
| AAACAGTGTTCAGAAATCTA+CGG | - | chr3_4:63679219-63679238 | None:intergenic | 30.0% | |
| !!! | GATTTCTGAACACTGTTTTT+TGG | + | chr3_4:63679221-63679240 | Msa0513450:exon | 30.0% |
| TGCGCATAATCTTAACAAGA+AGG | + | chr3_4:63674168-63674187 | Msa0513450:five_prime_UTR | 35.0% | |
| !!! | CGTTTGGGACTTTTTTTAAG+GGG | - | chr3_4:63674253-63674272 | None:intergenic | 35.0% |
| !!! | CCGTTTGGGACTTTTTTTAA+GGG | - | chr3_4:63674254-63674273 | None:intergenic | 35.0% |
| CCCTTAAAAAAAGTCCCAAA+CGG | + | chr3_4:63674251-63674270 | Msa0513450:CDS | 35.0% | |
| ! | CTGCTCTTAATTTGAAGGTT+AGG | + | chr3_4:63674483-63674502 | Msa0513450:CDS | 35.0% |
| GGTAGAATCAAATTCTTACC+AGG | - | chr3_4:63674623-63674642 | None:intergenic | 35.0% | |
| ACAAAAACTGAAACTCTCGT+AGG | - | chr3_4:63674793-63674812 | None:intergenic | 35.0% | |
| ! | AGGGAGGATTTTATAAGGAA+AGG | + | chr3_4:63674987-63675006 | Msa0513450:intron | 35.0% |
| ! | ATGCATGGGACATTTTGTAA+AGG | + | chr3_4:63675019-63675038 | Msa0513450:intron | 35.0% |
| ! | TGCATGGGACATTTTGTAAA+GGG | + | chr3_4:63675020-63675039 | Msa0513450:intron | 35.0% |
| TTGAAGGAGGATACAATGAA+GGG | + | chr3_4:63675110-63675129 | Msa0513450:intron | 35.0% | |
| CAACAGTCTGTGTAACATTT+AGG | - | chr3_4:63675203-63675222 | None:intergenic | 35.0% | |
| ! | ATGTTTTCAACGACAGAATG+CGG | + | chr3_4:63675585-63675604 | Msa0513450:intron | 35.0% |
| !!! | GTCTACCATATTGTTTTGGT+GGG | - | chr3_4:63675632-63675651 | None:intergenic | 35.0% |
| CACCAAAACAATATGGTAGA+CGG | + | chr3_4:63675631-63675650 | Msa0513450:intron | 35.0% | |
| ! | ATATCGTCTCACTAGGTTTT+GGG | + | chr3_4:63675779-63675798 | Msa0513450:intron | 35.0% |
| TTGACCAACATTAGTGATCT+AGG | - | chr3_4:63675862-63675881 | None:intergenic | 35.0% | |
| TGGGAGTTTCATTCCTAATT+AGG | - | chr3_4:63675948-63675967 | None:intergenic | 35.0% | |
| GAACATCACAAGGGATAAAA+GGG | + | chr3_4:63675993-63676012 | Msa0513450:intron | 35.0% | |
| TGATATCAGGTTCCTATTTG+AGG | - | chr3_4:63676041-63676060 | None:intergenic | 35.0% | |
| ATAGGTATTTCATCCACTCA+AGG | + | chr3_4:63676521-63676540 | Msa0513450:intron | 35.0% | |
| TAGGTATTTCATCCACTCAA+GGG | + | chr3_4:63676522-63676541 | Msa0513450:intron | 35.0% | |
| TACAGTAAAAACCACATCTG+GGG | - | chr3_4:63676567-63676586 | None:intergenic | 35.0% | |
| GTACAGTAAAAACCACATCT+GGG | - | chr3_4:63676568-63676587 | None:intergenic | 35.0% | |
| TGTACAGTAAAAACCACATC+TGG | - | chr3_4:63676569-63676588 | None:intergenic | 35.0% | |
| ! | GATGTGGTTTTTACTGTACA+AGG | + | chr3_4:63676569-63676588 | Msa0513450:CDS | 35.0% |
| ATCTTGACCATTCTCATAAG+TGG | - | chr3_4:63676996-63677015 | None:intergenic | 35.0% | |
| TGATGAATTGGTATCTAGGA+TGG | + | chr3_4:63677024-63677043 | Msa0513450:CDS | 35.0% | |
| ACATCAGCAAGATCATTTAG+AGG | - | chr3_4:63677070-63677089 | None:intergenic | 35.0% | |
| CTAGAATAACTTTATGGCAG+CGG | - | chr3_4:63677120-63677139 | None:intergenic | 35.0% | |
| GTATGAAGGATTTCCATGAA+GGG | + | chr3_4:63677176-63677195 | Msa0513450:CDS | 35.0% | |
| AAGATGATCTTAAGTTACCG+TGG | - | chr3_4:63677359-63677378 | None:intergenic | 35.0% | |
| TTTAGCAAATTGGTTGCGTT+TGG | - | chr3_4:63677547-63677566 | None:intergenic | 35.0% | |
| !!! | TGCATGTTTGTTTTTGTACC+AGG | + | chr3_4:63677647-63677666 | Msa0513450:intron | 35.0% |
| TCTCATAAACTTCAAGCAGA+AGG | - | chr3_4:63677725-63677744 | None:intergenic | 35.0% | |
| CTGAACCAACAAAGAAATAC+AGG | - | chr3_4:63677811-63677830 | None:intergenic | 35.0% | |
| !! | CTGTATTTCTTTGTTGGTTC+AGG | + | chr3_4:63677809-63677828 | Msa0513450:intron | 35.0% |
| GGATGTATAAAAACCTGATC+TGG | - | chr3_4:63677862-63677881 | None:intergenic | 35.0% | |
| GCTCTAGTAAGTAGTAACAT+AGG | - | chr3_4:63678222-63678241 | None:intergenic | 35.0% | |
| CCCCAGTAGTTACTTATTAA+AGG | + | chr3_4:63678259-63678278 | Msa0513450:intron | 35.0% | |
| ATGGTTGCTGAAATGTATTC+TGG | + | chr3_4:63678292-63678311 | Msa0513450:intron | 35.0% | |
| TCTCCTTAATTCATCTACCA+CGG | + | chr3_4:63678496-63678515 | Msa0513450:intron | 35.0% | |
| AAATGACCTTAGGGTTATGT+TGG | + | chr3_4:63678523-63678542 | Msa0513450:intron | 35.0% | |
| AATCTTCAAAACACCATACC+TGG | - | chr3_4:63678791-63678810 | None:intergenic | 35.0% | |
| !!! | GGTATGGTGTTTTGAAGATT+CGG | + | chr3_4:63678791-63678810 | Msa0513450:intron | 35.0% |
| !!! | GTATGGTGTTTTGAAGATTC+GGG | + | chr3_4:63678792-63678811 | Msa0513450:CDS | 35.0% |
| TTGCCGATACAAAAGAATTC+CGG | + | chr3_4:63678854-63678873 | Msa0513450:CDS | 35.0% | |
| CATCTGCTCTCTATAAACTA+CGG | - | chr3_4:63679275-63679294 | None:intergenic | 35.0% | |
| !!! | GCCGTTTGGGACTTTTTTTA+AGG | - | chr3_4:63674255-63674274 | None:intergenic | 40.0% |
| !! | ATTCAAGAAGGTAACGGAGA+CGG | - | chr3_4:63674313-63674332 | None:intergenic | 40.0% |
| TAAGAGCAGAGTAATGACAC+CGG | - | chr3_4:63674472-63674491 | None:intergenic | 40.0% | |
| GAGAGAGCTTATGAGAAAGT+TGG | + | chr3_4:63674897-63674916 | Msa0513450:intron | 40.0% | |
| ! | AAGGGTCTTATGATTAGGGA+TGG | + | chr3_4:63675074-63675093 | Msa0513450:intron | 40.0% |
| GTCTTATGATTAGGGATGGA+GGG | + | chr3_4:63675078-63675097 | Msa0513450:intron | 40.0% | |
| GTTGAAGGAGGATACAATGA+AGG | + | chr3_4:63675109-63675128 | Msa0513450:intron | 40.0% | |
| ATGTTACACAGACTGTTGCT+AGG | + | chr3_4:63675205-63675224 | Msa0513450:intron | 40.0% | |
| TGTTACACAGACTGTTGCTA+GGG | + | chr3_4:63675206-63675225 | Msa0513450:intron | 40.0% | |
| GTTGTGTTAATGTGTCGTGT+CGG | - | chr3_4:63675263-63675282 | None:intergenic | 40.0% | |
| !! | CGCTGCTGTAGTTTTTGAAA+TGG | - | chr3_4:63675327-63675346 | None:intergenic | 40.0% |
| TTCAAAAACTACAGCAGCGT+CGG | + | chr3_4:63675328-63675347 | Msa0513450:intron | 40.0% | |
| GTACTGTTTGTGCAATGGTA+AGG | + | chr3_4:63675441-63675460 | Msa0513450:intron | 40.0% | |
| !!! | CGTCTACCATATTGTTTTGG+TGG | - | chr3_4:63675633-63675652 | None:intergenic | 40.0% |
| ! | TGCCGTCTACCATATTGTTT+TGG | - | chr3_4:63675636-63675655 | None:intergenic | 40.0% |
| ! | GCAGTCTATGATGAAAGCAT+TGG | + | chr3_4:63675658-63675677 | Msa0513450:intron | 40.0% |
| TAACAAATCGAAGTTGCACC+AGG | + | chr3_4:63675753-63675772 | Msa0513450:intron | 40.0% | |
| ! | CATATCGTCTCACTAGGTTT+TGG | + | chr3_4:63675778-63675797 | Msa0513450:intron | 40.0% |
| ! | GCAATGAAGCAAACCCTTTT+AGG | - | chr3_4:63675824-63675843 | None:intergenic | 40.0% |
| ! | GGTTTGCTTCATTGCTTAAG+TGG | + | chr3_4:63675829-63675848 | Msa0513450:intron | 40.0% |
| TTGCTTCATTGCTTAAGTGG+AGG | + | chr3_4:63675832-63675851 | Msa0513450:intron | 40.0% | |
| CTCTCCTAGATCACTAATGT+TGG | + | chr3_4:63675855-63675874 | Msa0513450:intron | 40.0% | |
| AATTAGGCACCAGCCATATT+TGG | - | chr3_4:63675932-63675951 | None:intergenic | 40.0% | |
| AATATGGCTGGTGCCTAATT+AGG | + | chr3_4:63675932-63675951 | Msa0513450:intron | 40.0% | |
| AGGAATGAAACTCCCAGAAA+AGG | + | chr3_4:63675952-63675971 | Msa0513450:intron | 40.0% | |
| TGAAACTCCCAGAAAAGGAA+AGG | + | chr3_4:63675957-63675976 | Msa0513450:intron | 40.0% | |
| TCCCAGAAAAGGAAAGGATA+TGG | + | chr3_4:63675963-63675982 | Msa0513450:intron | 40.0% | |
| ! | CCCATATCCTTTCCTTTTCT+GGG | - | chr3_4:63675967-63675986 | None:intergenic | 40.0% |
| CCCAGAAAAGGAAAGGATAT+GGG | + | chr3_4:63675964-63675983 | Msa0513450:intron | 40.0% | |
| ! | ACCCATATCCTTTCCTTTTC+TGG | - | chr3_4:63675968-63675987 | None:intergenic | 40.0% |
| AAGGAAAGGATATGGGTATG+AGG | + | chr3_4:63675971-63675990 | Msa0513450:intron | 40.0% | |
| GGAACATCACAAGGGATAAA+AGG | + | chr3_4:63675992-63676011 | Msa0513450:intron | 40.0% | |
| ! | AAGGGATAAAAGGGTTTGCT+TGG | + | chr3_4:63676002-63676021 | Msa0513450:intron | 40.0% |
| ! | AGGGATAAAAGGGTTTGCTT+GGG | + | chr3_4:63676003-63676022 | Msa0513450:intron | 40.0% |
| TATCAGGTTCCTATTTGAGG+TGG | - | chr3_4:63676038-63676057 | None:intergenic | 40.0% | |
| ACAGTAAAAACCACATCTGG+GGG | - | chr3_4:63676566-63676585 | None:intergenic | 40.0% | |
| ACAGGGTCATATTAAGTGCA+AGG | + | chr3_4:63676609-63676628 | Msa0513450:CDS | 40.0% | |
| TGTATAAGGCTACAAAGTGC+AGG | - | chr3_4:63676716-63676735 | None:intergenic | 40.0% | |
| AGACAGATTAGAGATTGCTG+TGG | + | chr3_4:63676748-63676767 | Msa0513450:CDS | 40.0% | |
| AGAGATTGCTGTGGATGATA+TGG | + | chr3_4:63676757-63676776 | Msa0513450:CDS | 40.0% | |
| AATTTGAAAGGGCAGTCAGA+AGG | - | chr3_4:63676973-63676992 | None:intergenic | 40.0% | |
| CGTATGAAGGATTTCCATGA+AGG | + | chr3_4:63677175-63677194 | Msa0513450:CDS | 40.0% | |
| ATGTCGTGTTCTTCAAGACA+AGG | - | chr3_4:63677229-63677248 | None:intergenic | 40.0% | |
| TAAGTCTCTTTCCTTCACTG+TGG | + | chr3_4:63677286-63677305 | Msa0513450:intron | 40.0% | |
| GCAGGAAATAAATCCAGATC+AGG | + | chr3_4:63677846-63677865 | Msa0513450:CDS | 40.0% | |
| TGTCTGCTAGCATTAACCAA+TGG | - | chr3_4:63678061-63678080 | None:intergenic | 40.0% | |
| CATATGTAATTCACCACGAC+AGG | - | chr3_4:63678615-63678634 | None:intergenic | 40.0% | |
| TGCCGATACAAAAGAATTCC+GGG | + | chr3_4:63678855-63678874 | Msa0513450:CDS | 40.0% | |
| ! | TGCCCGGAATTCTTTTGTAT+CGG | - | chr3_4:63678860-63678879 | None:intergenic | 40.0% |
| TCATTATTTAGGGAAGACCC+AGG | - | chr3_4:63678946-63678965 | None:intergenic | 40.0% | |
| CAACAACCATAAGCATCTCT+AGG | - | chr3_4:63679068-63679087 | None:intergenic | 40.0% | |
| GTGATTGGAGAGAAAGTCAA+GGG | - | chr3_4:63679147-63679166 | None:intergenic | 40.0% | |
| TTGTTCGCCTGAAATTACAG+CGG | - | chr3_4:63679169-63679188 | None:intergenic | 40.0% | |
| GGCGAACAAACTGTAATTTC+AGG | + | chr3_4:63679180-63679199 | Msa0513450:CDS | 40.0% | |
| TAGAGAGCAGATGCTAAGTT+AGG | + | chr3_4:63679282-63679301 | Msa0513450:three_prime_UTR | 40.0% | |
| ! | AGATGCTAAGTTAGGTTGCT+TGG | + | chr3_4:63679290-63679309 | Msa0513450:three_prime_UTR | 40.0% |
| ! | TTGCTTGGAGTGCTTAAGTT+GGG | + | chr3_4:63679305-63679324 | Msa0513450:three_prime_UTR | 40.0% |
| AGGATGAGTTTCATCGACGA+CGG | + | chr3_4:63674188-63674207 | Msa0513450:exon | 45.0% | |
| GACTTAGACCCTTCCGATTT+CGG | + | chr3_4:63674218-63674237 | Msa0513450:CDS | 45.0% | |
| CTCCGTTACCTTCTTGAATG+CGG | + | chr3_4:63674314-63674333 | Msa0513450:CDS | 45.0% | |
| !! | GTTTTCGAGAAGCATACGAG+CGG | - | chr3_4:63674414-63674433 | None:intergenic | 45.0% |
| GCTCGTATGCTTCTCGAAAA+CGG | + | chr3_4:63674413-63674432 | Msa0513450:CDS | 45.0% | |
| ! | GAACTCTGCAACGGATTCAA+AGG | - | chr3_4:63674542-63674561 | None:intergenic | 45.0% |
| TCACGAAGAGAACTCTGCAA+CGG | - | chr3_4:63674551-63674570 | None:intergenic | 45.0% | |
| AAATCCACCGGAATGCGAAT+TGG | - | chr3_4:63674594-63674613 | None:intergenic | 45.0% | |
| ACCAGGAAACTGAAATCCAC+CGG | - | chr3_4:63674606-63674625 | None:intergenic | 45.0% | |
| ! | GGTCTTATGATTAGGGATGG+AGG | + | chr3_4:63675077-63675096 | Msa0513450:intron | 45.0% |
| ! | TGGAGGGTGTAGAAAGTTGA+AGG | + | chr3_4:63675094-63675113 | Msa0513450:intron | 45.0% |
| AGGGTGTAGAAAGTTGAAGG+AGG | + | chr3_4:63675097-63675116 | Msa0513450:intron | 45.0% | |
| AAGGGCTTAGTTGTTGTCAG+TGG | + | chr3_4:63675128-63675147 | Msa0513450:intron | 45.0% | |
| AAGACATTGTCCTCCAAGCA+GGG | - | chr3_4:63675391-63675410 | None:intergenic | 45.0% | |
| AAAGACATTGTCCTCCAAGC+AGG | - | chr3_4:63675392-63675411 | None:intergenic | 45.0% | |
| TGCCTGCAAAACAAGACATG+AGG | + | chr3_4:63675412-63675431 | Msa0513450:intron | 45.0% | |
| GCCTGCAAAACAAGACATGA+GGG | + | chr3_4:63675413-63675432 | Msa0513450:intron | 45.0% | |
| CCTGCAAAACAAGACATGAG+GGG | + | chr3_4:63675414-63675433 | Msa0513450:intron | 45.0% | |
| CAAAACAAGACATGAGGGGT+GGG | + | chr3_4:63675418-63675437 | Msa0513450:intron | 45.0% | |
| AAAACAAGACATGAGGGGTG+GGG | + | chr3_4:63675419-63675438 | Msa0513450:intron | 45.0% | |
| TGGGTATGAGGAACATCACA+AGG | + | chr3_4:63675983-63676002 | Msa0513450:intron | 45.0% | |
| GGGTATGAGGAACATCACAA+GGG | + | chr3_4:63675984-63676003 | Msa0513450:intron | 45.0% | |
| !! | AAGAGTGCTCCACCTCAAAT+AGG | + | chr3_4:63676026-63676045 | Msa0513450:intron | 45.0% |
| ACACACACACACATGTGAGA+TGG | + | chr3_4:63676410-63676429 | Msa0513450:intron | 45.0% | |
| CACACACACACATGTGAGAT+GGG | + | chr3_4:63676411-63676430 | Msa0513450:intron | 45.0% | |
| ACACACACACATGTGAGATG+GGG | + | chr3_4:63676412-63676431 | Msa0513450:intron | 45.0% | |
| AAGACCCATTGAAGCTCACA+GGG | + | chr3_4:63676592-63676611 | Msa0513450:CDS | 45.0% | |
| ATGACCCTGTGAGCTTCAAT+GGG | - | chr3_4:63676599-63676618 | None:intergenic | 45.0% | |
| TATGACCCTGTGAGCTTCAA+TGG | - | chr3_4:63676600-63676619 | None:intergenic | 45.0% | |
| GCGGTGAAGTAAGATTTGCA+CGG | + | chr3_4:63676675-63676694 | Msa0513450:CDS | 45.0% | |
| CGGTGAAGTAAGATTTGCAC+GGG | + | chr3_4:63676676-63676695 | Msa0513450:CDS | 45.0% | |
| TATCCCTTCCTGAAGAAGAC+AGG | + | chr3_4:63676924-63676943 | Msa0513450:CDS | 45.0% | |
| AAGCCTGTCTTCTTCAGGAA+GGG | - | chr3_4:63676930-63676949 | None:intergenic | 45.0% | |
| AGTCAGAAGGATTCTACGCA+AGG | - | chr3_4:63676960-63676979 | None:intergenic | 45.0% | |
| TAGAGGTTTAGCCATCTGCA+TGG | - | chr3_4:63677053-63677072 | None:intergenic | 45.0% | |
| AGCAAGACTCTCACGTATGA+AGG | + | chr3_4:63677162-63677181 | Msa0513450:CDS | 45.0% | |
| CGTGTTCTTCAAGACAAGGA+AGG | - | chr3_4:63677225-63677244 | None:intergenic | 45.0% | |
| TGAAGAACACGACATGAGTG+TGG | + | chr3_4:63677234-63677253 | Msa0513450:CDS | 45.0% | |
| GATGTTTCCTCTTAAGCGTG+CGG | + | chr3_4:63677983-63678002 | Msa0513450:CDS | 45.0% | |
| ! | CTTCAGGTGATGCCATTTCT+AGG | - | chr3_4:63678031-63678050 | None:intergenic | 45.0% |
| AACCAATGGCAAAGCTCTTC+AGG | - | chr3_4:63678047-63678066 | None:intergenic | 45.0% | |
| GAGCCGTGGTAGATGAATTA+AGG | - | chr3_4:63678502-63678521 | None:intergenic | 45.0% | |
| CACGGCTCAAAATGACCTTA+GGG | + | chr3_4:63678514-63678533 | Msa0513450:intron | 45.0% | |
| CCTCTTCCAACATAACCCTA+AGG | - | chr3_4:63678532-63678551 | None:intergenic | 45.0% | |
| CCTTAGGGTTATGTTGGAAG+AGG | + | chr3_4:63678529-63678548 | Msa0513450:intron | 45.0% | |
| TACTCAGCAGTTAGGCAGTT+AGG | - | chr3_4:63678586-63678605 | None:intergenic | 45.0% | |
| GGCTACAATACTCAGCAGTT+AGG | - | chr3_4:63678594-63678613 | None:intergenic | 45.0% | |
| GTAAAGTCAACAGCATTGCC+CGG | - | chr3_4:63678876-63678895 | None:intergenic | 45.0% | |
| GCAGAGCATGAAAAGTCATC+AGG | + | chr3_4:63679087-63679106 | Msa0513450:CDS | 45.0% | |
| GGTGATTGGAGAGAAAGTCA+AGG | - | chr3_4:63679148-63679167 | None:intergenic | 45.0% | |
| CCTGAAATTACAGCGGTGAT+TGG | - | chr3_4:63679162-63679181 | None:intergenic | 45.0% | |
| CCAATCACCGCTGTAATTTC+AGG | + | chr3_4:63679159-63679178 | Msa0513450:CDS | 45.0% | |
| ! | GTTGCTTGGAGTGCTTAAGT+TGG | + | chr3_4:63679304-63679323 | Msa0513450:three_prime_UTR | 45.0% |
| !! | AATATTTATTATATTTGAAT+AGG | + | chr3_4:63676503-63676522 | Msa0513450:intron | 5.0% |
| !! | ATGAAAAAAAAAAAAAAAAA+AGG | + | chr3_4:63678389-63678408 | Msa0513450:intron | 5.0% |
| ATGAGTTTCATCGACGACGG+CGG | + | chr3_4:63674191-63674210 | Msa0513450:CDS | 50.0% | |
| CTGATGTGCCGAAATCGGAA+GGG | - | chr3_4:63674229-63674248 | None:intergenic | 50.0% | |
| ACTGATGTGCCGAAATCGGA+AGG | - | chr3_4:63674230-63674249 | None:intergenic | 50.0% | |
| CTTGGAAAACGTCGCCGTTT+GGG | - | chr3_4:63674268-63674287 | None:intergenic | 50.0% | |
| CGCCGCATTCAAGAAGGTAA+CGG | - | chr3_4:63674319-63674338 | None:intergenic | 50.0% | |
| CGTTAACGCCGCATTCAAGA+AGG | - | chr3_4:63674325-63674344 | None:intergenic | 50.0% | |
| GAGACAAGCGTAGTAGAGAG+CGG | - | chr3_4:63674375-63674394 | None:intergenic | 50.0% | |
| TGCTCCGAACACACGTTTGA+CGG | + | chr3_4:63674443-63674462 | Msa0513450:CDS | 50.0% | |
| GTCACCGTCAAACGTGTGTT+CGG | - | chr3_4:63674450-63674469 | None:intergenic | 50.0% | |
| AACACACGTTTGACGGTGAC+CGG | + | chr3_4:63674450-63674469 | Msa0513450:CDS | 50.0% | |
| ! | TGCAACGGATTCAAAGGAGG+AGG | - | chr3_4:63674536-63674555 | None:intergenic | 50.0% |
| ! | CTCTGCAACGGATTCAAAGG+AGG | - | chr3_4:63674539-63674558 | None:intergenic | 50.0% |
| ! | TCCGGTGGATTTCAGTTTCC+TGG | + | chr3_4:63674602-63674621 | Msa0513450:CDS | 50.0% |
| ! | TGTTAATGTGTCGTGTCGGC+TGG | - | chr3_4:63675259-63675278 | None:intergenic | 50.0% |
| GTGCTTAATCTTCCCCTGCT+TGG | + | chr3_4:63675375-63675394 | Msa0513450:intron | 50.0% | |
| CTTAATCTTCCCCTGCTTGG+AGG | + | chr3_4:63675378-63675397 | Msa0513450:intron | 50.0% | |
| AGACATTGTCCTCCAAGCAG+GGG | - | chr3_4:63675390-63675409 | None:intergenic | 50.0% | |
| !!! | CCCCTCATGTCTTGTTTTGC+AGG | - | chr3_4:63675417-63675436 | None:intergenic | 50.0% |
| GCAAAACAAGACATGAGGGG+TGG | + | chr3_4:63675417-63675436 | Msa0513450:intron | 50.0% | |
| !! | GTGGGGTACTGTTTGTGCAA+TGG | + | chr3_4:63675436-63675455 | Msa0513450:intron | 50.0% |
| CTAGTGAGACGATATGTGCC+TGG | - | chr3_4:63675774-63675793 | None:intergenic | 50.0% | |
| CAGGCACATATCGTCTCACT+AGG | + | chr3_4:63675772-63675791 | Msa0513450:intron | 50.0% | |
| !!! | TCGTCTCACTAGGTTTTGGG+TGG | + | chr3_4:63675782-63675801 | Msa0513450:intron | 50.0% |
| !!! | CGTCTCACTAGGTTTTGGGT+GGG | + | chr3_4:63675783-63675802 | Msa0513450:intron | 50.0% |
| TACCACGGTCGTGCCAAATA+TGG | + | chr3_4:63675916-63675935 | Msa0513450:intron | 50.0% | |
| GTTGGAACTGAACCCTTGAG+TGG | - | chr3_4:63676537-63676556 | None:intergenic | 50.0% | |
| CACATCTGGGGGAAAGTAGT+TGG | - | chr3_4:63676555-63676574 | None:intergenic | 50.0% | |
| CAACTACTTTCCCCCAGATG+TGG | + | chr3_4:63676553-63676572 | Msa0513450:CDS | 50.0% | |
| GAAGACCCATTGAAGCTCAC+AGG | + | chr3_4:63676591-63676610 | Msa0513450:CDS | 50.0% | |
| GAGACTGATTGGAAAGAGCG+CGG | + | chr3_4:63676656-63676675 | Msa0513450:CDS | 50.0% | |
| GAAGCCTGTCTTCTTCAGGA+AGG | - | chr3_4:63676931-63676950 | None:intergenic | 50.0% | |
| TAGGATGGATGCCATGCAGA+TGG | + | chr3_4:63677039-63677058 | Msa0513450:CDS | 50.0% | |
| !! | CTTGGTGCCACACCTAGAAA+TGG | + | chr3_4:63678016-63678035 | Msa0513450:CDS | 50.0% |
| ! | GGTGATGCCATTTCTAGGTG+TGG | - | chr3_4:63678026-63678045 | None:intergenic | 50.0% |
| CACCTGAAGAGCTTTGCCAT+TGG | + | chr3_4:63678042-63678061 | Msa0513450:CDS | 50.0% | |
| !! | CCTAAGGTCATTTTGAGCCG+TGG | - | chr3_4:63678516-63678535 | None:intergenic | 50.0% |
| CCACGGCTCAAAATGACCTT+AGG | + | chr3_4:63678513-63678532 | Msa0513450:intron | 50.0% | |
| ! | CTGAGTATTGTAGCCTGTCG+TGG | + | chr3_4:63678599-63678618 | Msa0513450:intron | 50.0% |
| TTGACTTTACCGCCACCATC+TGG | + | chr3_4:63678886-63678905 | Msa0513450:CDS | 50.0% | |
| AGAGATGAGTCTCCAGATGG+TGG | - | chr3_4:63678901-63678920 | None:intergenic | 50.0% | |
| CGAAGAGATGAGTCTCCAGA+TGG | - | chr3_4:63678904-63678923 | None:intergenic | 50.0% | |
| ATCTCTCTCGTCAAGCTCAG+CGG | - | chr3_4:63679019-63679038 | None:intergenic | 50.0% | |
| CAAGCGCCTAGAGATGCTTA+TGG | + | chr3_4:63679059-63679078 | Msa0513450:CDS | 50.0% | |
| GGGGACTGATGTGCCGAAAT+CGG | - | chr3_4:63674234-63674253 | None:intergenic | 55.0% | |
| GCTTGGAAAACGTCGCCGTT+TGG | - | chr3_4:63674269-63674288 | None:intergenic | 55.0% | |
| ACGTCAACGCACGTGACCAA+TGG | + | chr3_4:63674342-63674361 | Msa0513450:CDS | 55.0% | |
| CGTCAACGCACGTGACCAAT+GGG | + | chr3_4:63674343-63674362 | Msa0513450:CDS | 55.0% | |
| ACAAGCGTAGTAGAGAGCGG+TGG | - | chr3_4:63674372-63674391 | None:intergenic | 55.0% | |
| CTCTACTACGCTTGTCTCGC+CGG | + | chr3_4:63674377-63674396 | Msa0513450:CDS | 55.0% | |
| TGTCCCGCCAATTCGCATTC+CGG | + | chr3_4:63674584-63674603 | Msa0513450:CDS | 55.0% | |
| TCCACCGGAATGCGAATTGG+CGG | - | chr3_4:63674591-63674610 | None:intergenic | 55.0% | |
| GTGCCTGACGAGTCTTACCA+CGG | + | chr3_4:63675901-63675920 | Msa0513450:intron | 55.0% | |
| AGCCATATTTGGCACGACCG+TGG | - | chr3_4:63675921-63675940 | None:intergenic | 55.0% | |
| ACGGTCGTGCCAAATATGGC+TGG | + | chr3_4:63675920-63675939 | Msa0513450:intron | 55.0% | |
| GCAGGAAGCCTGTCTTCTTC+AGG | - | chr3_4:63676935-63676954 | None:intergenic | 55.0% | |
| AGGATTCTACGCAAGGCTGC+AGG | - | chr3_4:63676953-63676972 | None:intergenic | 55.0% | |
| CAGGTACACCGATCGTTTGC+AGG | + | chr3_4:63677828-63677847 | Msa0513450:intron | 55.0% | |
| GTTTCCTCTTAAGCGTGCGG+TGG | + | chr3_4:63677986-63678005 | Msa0513450:CDS | 55.0% | |
| ! | GATGAGTCTCCAGATGGTGG+CGG | - | chr3_4:63678898-63678917 | None:intergenic | 55.0% |
| !! | GAAGGTAACGGAGACGGTCG+AGG | - | chr3_4:63674307-63674326 | None:intergenic | 60.0% |
| AGAGAGCGGTGGAGTCCCAT+TGG | - | chr3_4:63674361-63674380 | None:intergenic | 60.0% | |
| GAAGCATACGAGCGGCATCG+AGG | - | chr3_4:63674406-63674425 | None:intergenic | 60.0% | |
| CCACCGGAATGCGAATTGGC+GGG | - | chr3_4:63674590-63674609 | None:intergenic | 60.0% | |
| CGACCGTGGTAAGACTCGTC+AGG | - | chr3_4:63675907-63675926 | None:intergenic | 60.0% | |
| TCAGCCACCGCACGCTTAAG+AGG | - | chr3_4:63677993-63678012 | None:intergenic | 60.0% | |
| ACAACTGTCCCGAGCATGCC+TGG | + | chr3_4:63678925-63678944 | Msa0513450:CDS | 60.0% | |
| CAACTGTCCCGAGCATGCCT+GGG | + | chr3_4:63678926-63678945 | Msa0513450:CDS | 60.0% | |
| AGGGAAGACCCAGGCATGCT+CGG | - | chr3_4:63678937-63678956 | None:intergenic | 60.0% | |
| ! | GTTTTCCAAGCCTCCCGCGC+CGG | + | chr3_4:63674278-63674297 | Msa0513450:CDS | 65.0% |
| ! | ACGAGCGGCATCGAGGTGAC+CGG | - | chr3_4:63674399-63674418 | None:intergenic | 65.0% |
| CCCGCCAATTCGCATTCCGG+TGG | + | chr3_4:63674587-63674606 | Msa0513450:CDS | 65.0% | |
| GCGTGCGGTGGCTGATGTCT+TGG | + | chr3_4:63677998-63678017 | Msa0513450:CDS | 65.0% | |
| GGGAAGACCCAGGCATGCTC+GGG | - | chr3_4:63678936-63678955 | None:intergenic | 65.0% | |
| ACGGAGACGGTCGAGGTCGC+CGG | - | chr3_4:63674300-63674319 | None:intergenic | 70.0% | |
| ! | ACGGTCGAGGTCGCCGGCGC+GGG | - | chr3_4:63674294-63674313 | None:intergenic | 80.0% |
| ! | GACGGTCGAGGTCGCCGGCG+CGG | - | chr3_4:63674295-63674314 | None:intergenic | 80.0% |
| ! | GGTCGCCGGCGCGGGAGGCT+TGG | - | chr3_4:63674286-63674305 | None:intergenic | 85.0% |
| ! | GTCGAGGTCGCCGGCGCGGG+AGG | - | chr3_4:63674291-63674310 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 63674140 | 63679395 | 63674140 | ID=Msa0513450;Name=Msa0513450 |
| chr3_4 | mRNA | 63674140 | 63679395 | 63674140 | ID=Msa0513450-mRNA-1;Parent=Msa0513450;Name=Msa0513450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|1|1|1|1|1|5|174|597 |
| chr3_4 | exon | 63674140 | 63674623 | 63674140 | ID=Msa0513450-mRNA-1:exon:15906;Parent=Msa0513450-mRNA-1 |
| chr3_4 | exon | 63676525 | 63677284 | 63676525 | ID=Msa0513450-mRNA-1:exon:15907;Parent=Msa0513450-mRNA-1 |
| chr3_4 | exon | 63677831 | 63677867 | 63677831 | ID=Msa0513450-mRNA-1:exon:15908;Parent=Msa0513450-mRNA-1 |
| chr3_4 | exon | 63677948 | 63678081 | 63677948 | ID=Msa0513450-mRNA-1:exon:15909;Parent=Msa0513450-mRNA-1 |
| chr3_4 | exon | 63678792 | 63679395 | 63678792 | ID=Msa0513450-mRNA-1:exon:15910;Parent=Msa0513450-mRNA-1 |
| chr3_4 | five_prime_UTR | 63674140 | 63674190 | 63674140 | ID=Msa0513450-mRNA-1:five_prime_utr;Parent=Msa0513450-mRNA-1 |
| chr3_4 | CDS | 63674191 | 63674623 | 63674191 | ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1 |
| chr3_4 | CDS | 63676525 | 63677284 | 63676525 | ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1 |
| chr3_4 | CDS | 63677831 | 63677867 | 63677831 | ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1 |
| chr3_4 | CDS | 63677948 | 63678081 | 63677948 | ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1 |
| chr3_4 | CDS | 63678792 | 63679221 | 63678792 | ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1 |
| chr3_4 | three_prime_UTR | 63679222 | 63679395 | 63679222 | ID=Msa0513450-mRNA-1:three_prime_utr;Parent=Msa0513450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
