AlfalfaGEDB | Msa0513450

M. sativa cultivar zhongmu-4 / Msa0513450

KEGG: K10520
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF13857.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513450	XP_013461190.1	98.807	587	7	0	1	587	1	587	0.0	1198

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513450	sp\|Q9SJ85\|Y2474_ARATH	72.744	554	138	3	16	564	26	571	0.0	834

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513450	A0A072UZJ2	98.807	587	7	0	1	587	1	587	0.0	1198

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TFs/TRs:

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Gene ID	Type	Classification
Msa0513450	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0047810	Msa0513450	0.875697	2.512547e-68	-8.615850e-47
Msa0229850	Msa0513450	0.906837	9.682033e-81	-8.615850e-47
Msa0513450	Msa0526620	0.908694	1.291250e-81	-8.615850e-47
Msa0513450	Msa1101530	0.826580	2.508888e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513450	MtrunA17_Chr3g0120891	97.956	587	6	1	1	587	1	581	0.0	1183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0513450	AT2G04740.1	72.744	554	138	3	16	564	26	571	834
Msa0513450	AT2G04740.4	71.144	402	103	3	16	412	26	419	587
Msa0513450	AT2G04740.3	71.392	388	98	3	16	398	26	405	568
Msa0513450	AT2G04740.2	71.392	388	98	3	16	398	26	405	568

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Find 137 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGTTCAGAAATCTA+CGG	0.604061	3_4:-63679216	None:intergenic
AAATCCACCGGAATGCGAAT+TGG	0.454070	3_4:-63674591	None:intergenic
AACACACGTTTGACGGTGAC+CGG	0.496734	3_4:+63674450	Msa0513450:CDS
AACCAATGGCAAAGCTCTTC+AGG	0.332097	3_4:-63678044	None:intergenic
AAGACCCATTGAAGCTCACA+GGG	0.615492	3_4:+63676592	Msa0513450:CDS
AAGCCTGTCTTCTTCAGGAA+GGG	0.600256	3_4:-63676927	None:intergenic
AATTTGAAAGGGCAGTCAGA+AGG	0.595225	3_4:-63676970	None:intergenic
ACAACTGTCCCGAGCATGCC+TGG	0.328006	3_4:+63678925	Msa0513450:CDS
ACAAGCGTAGTAGAGAGCGG+TGG	0.635729	3_4:-63674369	None:intergenic
ACAGGGTCATATTAAGTGCA+AGG	0.612478	3_4:+63676609	Msa0513450:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATGAGAATGTTAAGGTG+TGG	+	chr3_4:63674658-63674677	Msa0513450:intron	30.0%
GAAAGGAAATCATTAATGCA+TGG	+	chr3_4:63675004-63675023	Msa0513450:intron	30.0%
TGAGAATTGAAATGACTGAT+TGG	+	chr3_4:63675165-63675184	Msa0513450:intron	30.0%
AAAAACCCACCAAAACAATA+TGG	+	chr3_4:63675624-63675643	Msa0513450:intron	30.0%
AGCATTAGATATCTGATATC+AGG	-	chr3_4:63676054-63676073	None:intergenic	30.0%
CATAAAACAATGAATCGAGT+AGG	+	chr3_4:63676260-63676279	Msa0513450:intron	30.0%
TTCTTACACAACAAGGAATT+AGG	+	chr3_4:63676297-63676316	Msa0513450:intron	30.0%
TGTTGTATTTATACATGGTC+TGG	+	chr3_4:63676475-63676494	Msa0513450:intron	30.0%
GTTGTATTTATACATGGTCT+GGG	+	chr3_4:63676476-63676495	Msa0513450:intron	30.0%
CTCATAAGTGGAATTTGAAA+GGG	-	chr3_4:63676984-63677003	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	63674140	63679395	63674140	ID=Msa0513450;Name=Msa0513450
chr3_4	mRNA	63674140	63679395	63674140	ID=Msa0513450-mRNA-1;Parent=Msa0513450;Name=Msa0513450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51\|1\|1\|1\|1\|1\|5\|174\|597
chr3_4	exon	63674140	63674623	63674140	ID=Msa0513450-mRNA-1:exon:15906;Parent=Msa0513450-mRNA-1
chr3_4	exon	63676525	63677284	63676525	ID=Msa0513450-mRNA-1:exon:15907;Parent=Msa0513450-mRNA-1
chr3_4	exon	63677831	63677867	63677831	ID=Msa0513450-mRNA-1:exon:15908;Parent=Msa0513450-mRNA-1
chr3_4	exon	63677948	63678081	63677948	ID=Msa0513450-mRNA-1:exon:15909;Parent=Msa0513450-mRNA-1
chr3_4	exon	63678792	63679395	63678792	ID=Msa0513450-mRNA-1:exon:15910;Parent=Msa0513450-mRNA-1
chr3_4	five_prime_UTR	63674140	63674190	63674140	ID=Msa0513450-mRNA-1:five_prime_utr;Parent=Msa0513450-mRNA-1
chr3_4	CDS	63674191	63674623	63674191	ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1
chr3_4	CDS	63676525	63677284	63676525	ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1
chr3_4	CDS	63677831	63677867	63677831	ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1
chr3_4	CDS	63677948	63678081	63677948	ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1
chr3_4	CDS	63678792	63679221	63678792	ID=Msa0513450-mRNA-1:cds;Parent=Msa0513450-mRNA-1
chr3_4	three_prime_UTR	63679222	63679395	63679222	ID=Msa0513450-mRNA-1:three_prime_utr;Parent=Msa0513450-mRNA-1

Gene Sequence

>Msa0513450

ATGAGTTTCATCGACGACGGCGGCATCGACTTAGACCCTTCCGATTTCGGCACATCAGTCCCCTTAAAAAAAGTCCCAAACGGCGACGTTTTCCAAGCCTCCCGCGCCGGCGACCTCGACCGTCTCCGTTACCTTCTTGAATGCGGCGTTAACGTCAACGCACGTGACCAATGGGACTCCACCGCTCTCTACTACGCTTGTCTCGCCGGTCACCTCGATGCCGCTCGTATGCTTCTCGAAAACGGCGCTATTTGCTCCGAACACACGTTTGACGGTGACCGGTGTCATTACTCTGCTCTTAATTTGAAGGTTAGGAAGCTTCTTAAAGCTTTTGAAGCTCGTCCTCCTCCTTTGAATCCGTTGCAGAGTTCTCTTCGTGATACTTTCTTTGCTTGTCCCGCCAATTCGCATTCCGGTGGATTTCAGTTTCCTGGTATTTCATCCACTCAAGGGTTCAGTTCCAACTACTTTCCCCCAGATGTGGTTTTTACTGTACAAGGAAGACCCATTGAAGCTCACAGGGTCATATTAAGTGCAAGGTCGCCATTTTTCAAGAAAAAGTTTGAGACTGATTGGAAAGAGCGCGGTGAAGTAAGATTTGCACGGGAAAAGTTGTCATATCCTGCACTTTGTAGCCTTATACATTTCTTTTATTCAGACAGATTAGAGATTGCTGTGGATGATATGGAGAATCTTGTGAGAATTTGCAAAGTATGCAAATGTGAATCTCTGCAGAAAATTCTTGAGAAAGAAGTAATTCATCAAAAATATGCAGACTATAAAGCTTTGACAGATATAGACAATTCTCAAAAGCGGTTTATTTTACAGGGCATATCCCTTCCTGAAGAAGACAGGCTTCCTGCAGCCTTGCGTAGAATCCTTCTGACTGCCCTTTCAAATTCCACTTATGAGAATGGTCAAGATAATGGAATTGATGAATTGGTATCTAGGATGGATGCCATGCAGATGGCTAAACCTCTAAATGATCTTGCTGATGTTTGCGTTAGAGTTGATAAAAAGAATTTCCGCTGCCATAAAGTTATTCTAGCATCGAGGTCAGAATATTTCAAAGCAAGACTCTCACGTATGAAGGATTTCCATGAAGGGAAAGATGAATTATATATTGACTTCCTTCCTTGTCTTGAAGAACACGACATGAGTGTGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGATCGTTTGCAGGAAATAAATCCAGATCAGGCTGAGGAAATGTTTGATATTGCTTCTAGATACTTGATGTTTCCTCTTAAGCGTGCGGTGGCTGATGTCTTGGTGCCACACCTAGAAATGGCATCACCTGAAGAGCTTTGCCATTGGTTAATGCTAGCAGACATGTATGGTGTTTTGAAGATTCGGGAATTCTGTCTAGATACCATTGCCTGTAATTTTGAATTATTTGCCGATACAAAAGAATTCCGGGCAATGCTGTTGACTTTACCGCCACCATCTGGAGACTCATCTCTTCGTACAACTGTCCCGAGCATGCCTGGGTCTTCCCTAAATAATGATCAAGGAAATCTTCTTGATGATTTACGTGATAAATGGCTTGAAATTGAAGCCGCTGAGCTTGACGAGAGAGATGAGAGTGCTTTACAATTTGACAAGCGCCTAGAGATGCTTATGGTTGTTGCAGAGCATGAAAAGTCATCAGGTGATGCTGAATCAGAAGTTGTTAATGATGTCACACCCTTGACTTTCTCTCCAATCACCGCTGTAATTTCAGGCGAACAAACTGTAATTTCAGGCGAACAAAAAGAACCGTAG

Protein sequence

>Msa0513450

MSFIDDGGIDLDPSDFGTSVPLKKVPNGDVFQASRAGDLDRLRYLLECGVNVNARDQWDSTALYYACLAGHLDAARMLLENGAICSEHTFDGDRCHYSALNLKVRKLLKAFEARPPPLNPLQSSLRDTFFACPANSHSGGFQFPGISSTQGFSSNYFPPDVVFTVQGRPIEAHRVILSARSPFFKKKFETDWKERGEVRFAREKLSYPALCSLIHFFYSDRLEIAVDDMENLVRICKVCKCESLQKILEKEVIHQKYADYKALTDIDNSQKRFILQGISLPEEDRLPAALRRILLTALSNSTYENGQDNGIDELVSRMDAMQMAKPLNDLADVCVRVDKKNFRCHKVILASRSEYFKARLSRMKDFHEGKDELYIDFLPCLEEHDMSVEAFEKMIEYMYTDRLQEINPDQAEEMFDIASRYLMFPLKRAVADVLVPHLEMASPEELCHWLMLADMYGVLKIREFCLDTIACNFELFADTKEFRAMLLTLPPPSGDSSLRTTVPSMPGSSLNNDQGNLLDDLRDKWLEIEAAELDERDESALQFDKRLEMLMVVAEHEKSSGDAESEVVNDVTPLTFSPITAVISGEQTVISGEQKEP*