Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526620 | XP_013461190.1 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526620 | sp|Q9SJ85|Y2474_ARATH | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526620 | A0A072UZJ2 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0526620 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047810 | Msa0526620 | 0.946948 | 1.736726e-105 | -8.615850e-47 |
| Msa0229850 | Msa0526620 | 0.845251 | 4.564443e-59 | -8.615850e-47 |
| Msa0513450 | Msa0526620 | 0.908694 | 1.291250e-81 | -8.615850e-47 |
| Msa0526620 | Msa1101530 | 0.873323 | 1.607854e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526620 | MtrunA17_Chr3g0120891 | 97.956 | 587 | 6 | 1 | 1 | 587 | 1 | 581 | 0.0 | 1183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526620 | AT2G04740.1 | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Msa0526620 | AT2G04740.4 | 71.144 | 402 | 103 | 3 | 16 | 412 | 26 | 419 | 0.0 | 587 |
| Msa0526620 | AT2G04740.3 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
| Msa0526620 | AT2G04740.2 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
Find 137 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCTTGATCATTATTT+AGG | 0.129432 | 3_4:+80519309 | None:intergenic |
| ATAATTCATCTTTCCCTTCA+TGG | 0.209480 | 3_4:+80521075 | None:intergenic |
| TTGATGATTTACGTGATAAA+TGG | 0.228719 | 3_4:-80519283 | Msa0526620:CDS |
| TCGATGCTAGAATAACTTTA+TGG | 0.240325 | 3_4:+80521141 | None:intergenic |
| CCAATCACCGCTGTAATTTC+AGG | 0.266996 | 3_4:-80519104 | Msa0526620:CDS |
| GACTTAGACCCTTCCGATTT+CGG | 0.267048 | 3_4:-80524067 | Msa0526620:CDS |
| GGCAAATAATTCAAAATTAC+AGG | 0.300060 | 3_4:+80519427 | None:intergenic |
| TCCGGTGGATTTCAGTTTCC+TGG | 0.303043 | 3_4:-80523683 | Msa0526620:intron |
| CTTCAGGTGATGCCATTTCT+AGG | 0.304251 | 3_4:+80520236 | None:intergenic |
| TATGAGAATGGTCAAGATAA+TGG | 0.315888 | 3_4:-80521266 | Msa0526620:CDS |
| TTGCCGATACAAAAGAATTC+CGG | 0.318461 | 3_4:-80519409 | Msa0526620:CDS |
| ACAACTGTCCCGAGCATGCC+TGG | 0.328006 | 3_4:-80519338 | Msa0526620:CDS |
| AACCAATGGCAAAGCTCTTC+AGG | 0.332097 | 3_4:+80520220 | None:intergenic |
| GGCGAACAAACTGTAATTTC+AGG | 0.337080 | 3_4:-80519083 | Msa0526620:CDS |
| TGCTCCGAACACACGTTTGA+CGG | 0.338738 | 3_4:-80523842 | Msa0526620:CDS |
| TAGAGAGCAGATGCTAAGTT+AGG | 0.345187 | 3_4:-80518981 | Msa0526620:three_prime_UTR |
| CTTGGAAAACGTCGCCGTTT+GGG | 0.353575 | 3_4:+80524020 | None:intergenic |
| TTACTCTGCTCTTAATTTGA+AGG | 0.354172 | 3_4:-80523807 | Msa0526620:CDS |
| CTGAATAAAAGAAATGTATA+AGG | 0.355396 | 3_4:+80521537 | None:intergenic |
| TATGACCCTGTGAGCTTCAA+TGG | 0.355838 | 3_4:+80521667 | None:intergenic |
| ACATCAGCAAGATCATTTAG+AGG | 0.359931 | 3_4:+80521197 | None:intergenic |
| ATTTCCTTGATCATTATTTA+GGG | 0.362505 | 3_4:+80519310 | None:intergenic |
| GCAGGAAGCCTGTCTTCTTC+AGG | 0.365112 | 3_4:+80521332 | None:intergenic |
| TGTCCCGCCAATTCGCATTC+CGG | 0.366372 | 3_4:-80523701 | Msa0526620:CDS |
| CTGCTCTTAATTTGAAGGTT+AGG | 0.367208 | 3_4:-80523802 | Msa0526620:CDS |
| TGCCGATACAAAAGAATTCC+GGG | 0.375788 | 3_4:-80519408 | Msa0526620:CDS |
| CCTGAAATTACAGCGGTGAT+TGG | 0.383019 | 3_4:+80519104 | None:intergenic |
| GCTTGGAAAACGTCGCCGTT+TGG | 0.392528 | 3_4:+80524019 | None:intergenic |
| AGATAATGGAATTGATGAAT+TGG | 0.393017 | 3_4:-80521252 | Msa0526620:CDS |
| CAGGTACACCGATCGTTTGC+AGG | 0.393496 | 3_4:-80520436 | Msa0526620:CDS |
| AGAGATTGCTGTGGATGATA+TGG | 0.401698 | 3_4:-80521507 | Msa0526620:CDS |
| TCAAATTCCACTTATGAGAA+TGG | 0.404180 | 3_4:-80521278 | Msa0526620:CDS |
| ACGGTCGAGGTCGCCGGCGC+GGG | 0.409392 | 3_4:+80523994 | None:intergenic |
| ATCTTGACCATTCTCATAAG+TGG | 0.413032 | 3_4:+80521271 | None:intergenic |
| GGTCGCCGGCGCGGGAGGCT+TGG | 0.425592 | 3_4:+80524002 | None:intergenic |
| CAAGCGCCTAGAGATGCTTA+TGG | 0.430680 | 3_4:-80519204 | Msa0526620:CDS |
| TTGACTTTACCGCCACCATC+TGG | 0.432801 | 3_4:-80519377 | Msa0526620:CDS |
| TCAGCCACCGCACGCTTAAG+AGG | 0.432979 | 3_4:+80520274 | None:intergenic |
| GCAGGAAATAAATCCAGATC+AGG | 0.444091 | 3_4:-80520418 | Msa0526620:intron |
| TTGCTTGGAGTGCTTAAGTT+GGG | 0.445475 | 3_4:-80518958 | Msa0526620:three_prime_UTR |
| GGGGACTGATGTGCCGAAAT+CGG | 0.446957 | 3_4:+80524054 | None:intergenic |
| CTCTACTACGCTTGTCTCGC+CGG | 0.450922 | 3_4:-80523908 | Msa0526620:CDS |
| AAATCCACCGGAATGCGAAT+TGG | 0.454070 | 3_4:+80523694 | None:intergenic |
| CGTCAACGCACGTGACCAAT+GGG | 0.454729 | 3_4:-80523942 | Msa0526620:CDS |
| ACGTCAACGCACGTGACCAA+TGG | 0.460070 | 3_4:-80523943 | Msa0526620:CDS |
| CTCATAAGTGGAATTTGAAA+GGG | 0.462115 | 3_4:+80521283 | None:intergenic |
| AGGGAAGACCCAGGCATGCT+CGG | 0.478303 | 3_4:+80519329 | None:intergenic |
| GTTGCTTGGAGTGCTTAAGT+TGG | 0.479363 | 3_4:-80518959 | Msa0526620:three_prime_UTR |
| CTTGGTGCCACACCTAGAAA+TGG | 0.481090 | 3_4:-80520248 | Msa0526620:CDS |
| GTCACCGTCAAACGTGTGTT+CGG | 0.482387 | 3_4:+80523838 | None:intergenic |
| AGATGCTAAGTTAGGTTGCT+TGG | 0.482412 | 3_4:-80518973 | Msa0526620:three_prime_UTR |
| ACGGAGACGGTCGAGGTCGC+CGG | 0.484646 | 3_4:+80523988 | None:intergenic |
| CGTTAACGCCGCATTCAAGA+AGG | 0.487687 | 3_4:+80523963 | None:intergenic |
| AGCAAGACTCTCACGTATGA+AGG | 0.487920 | 3_4:-80521102 | Msa0526620:CDS |
| TCTCATAAGTGGAATTTGAA+AGG | 0.493040 | 3_4:+80521282 | None:intergenic |
| GAATTGATGAATTGGTATCT+AGG | 0.495038 | 3_4:-80521244 | Msa0526620:CDS |
| AACACACGTTTGACGGTGAC+CGG | 0.496734 | 3_4:-80523835 | Msa0526620:CDS |
| GCAGAGCATGAAAAGTCATC+AGG | 0.503518 | 3_4:-80519176 | Msa0526620:CDS |
| GCGTGCGGTGGCTGATGTCT+TGG | 0.504420 | 3_4:-80520266 | Msa0526620:CDS |
| AGGATTCTACGCAAGGCTGC+AGG | 0.504870 | 3_4:+80521314 | None:intergenic |
| TCTTCCCTAAATAATGATCA+AGG | 0.508410 | 3_4:-80519314 | Msa0526620:CDS |
| GCTCGTATGCTTCTCGAAAA+CGG | 0.515902 | 3_4:-80523872 | Msa0526620:CDS |
| CCCGCCAATTCGCATTCCGG+TGG | 0.516474 | 3_4:-80523698 | Msa0526620:CDS |
| GGGAAGACCCAGGCATGCTC+GGG | 0.516596 | 3_4:+80519330 | None:intergenic |
| CAACTGTCCCGAGCATGCCT+GGG | 0.516727 | 3_4:-80519337 | Msa0526620:CDS |
| CGTATGAAGGATTTCCATGA+AGG | 0.522102 | 3_4:-80521089 | Msa0526620:CDS |
| ATGACCCTGTGAGCTTCAAT+GGG | 0.523451 | 3_4:+80521668 | None:intergenic |
| TAATTCAAAATTACAGGCAA+TGG | 0.524676 | 3_4:+80519433 | None:intergenic |
| TGATGAATTGGTATCTAGGA+TGG | 0.526622 | 3_4:-80521240 | Msa0526620:CDS |
| GTCGAGGTCGCCGGCGCGGG+AGG | 0.526895 | 3_4:+80523997 | None:intergenic |
| CTAGAATAACTTTATGGCAG+CGG | 0.541146 | 3_4:+80521147 | None:intergenic |
| CAACAACCATAAGCATCTCT+AGG | 0.542190 | 3_4:+80519198 | None:intergenic |
| GGTGATGCCATTTCTAGGTG+TGG | 0.543342 | 3_4:+80520241 | None:intergenic |
| GAACTCTGCAACGGATTCAA+AGG | 0.544374 | 3_4:+80523746 | None:intergenic |
| ATTTATTTCCTGCAAACGAT+CGG | 0.548048 | 3_4:+80520428 | None:intergenic |
| TCCACCGGAATGCGAATTGG+CGG | 0.548080 | 3_4:+80523697 | None:intergenic |
| CACCTGAAGAGCTTTGCCAT+TGG | 0.550101 | 3_4:-80520222 | Msa0526620:CDS |
| CCACCGGAATGCGAATTGGC+GGG | 0.551808 | 3_4:+80523698 | None:intergenic |
| GAAGGTAACGGAGACGGTCG+AGG | 0.554738 | 3_4:+80523981 | None:intergenic |
| TGTATAAGGCTACAAAGTGC+AGG | 0.556046 | 3_4:+80521551 | None:intergenic |
| GAAGACCCATTGAAGCTCAC+AGG | 0.556477 | 3_4:-80521673 | Msa0526620:CDS |
| ATAGGTATTTCATCCACTCA+AGG | 0.558796 | 3_4:-80521743 | Msa0526620:intron |
| TGCGCATAATCTTAACAAGA+AGG | 0.558852 | 3_4:-80524117 | Msa0526620:five_prime_UTR |
| AGAGAGCGGTGGAGTCCCAT+TGG | 0.560808 | 3_4:+80523927 | None:intergenic |
| TATCCCTTCCTGAAGAAGAC+AGG | 0.561398 | 3_4:-80521340 | Msa0526620:CDS |
| ACTGATGTGCCGAAATCGGA+AGG | 0.562037 | 3_4:+80524058 | None:intergenic |
| ACGAGCGGCATCGAGGTGAC+CGG | 0.567999 | 3_4:+80523889 | None:intergenic |
| CATCTGCTCTCTATAAACTA+CGG | 0.577759 | 3_4:+80518991 | None:intergenic |
| CGGTGAAGTAAGATTTGCAC+GGG | 0.578959 | 3_4:-80521588 | Msa0526620:CDS |
| GACGGTCGAGGTCGCCGGCG+CGG | 0.580861 | 3_4:+80523993 | None:intergenic |
| GTAAAGTCAACAGCATTGCC+CGG | 0.581664 | 3_4:+80519390 | None:intergenic |
| CTATCTATATTATTATTACA+CGG | 0.582185 | 3_4:-80518890 | Msa0526620:three_prime_UTR |
| TAGGATGGATGCCATGCAGA+TGG | 0.591367 | 3_4:-80521225 | Msa0526620:CDS |
| TAGGTATTTCATCCACTCAA+GGG | 0.593239 | 3_4:-80521742 | Msa0526620:CDS |
| AATTTGAAAGGGCAGTCAGA+AGG | 0.595225 | 3_4:+80521294 | None:intergenic |
| ACCAGGAAACTGAAATCCAC+CGG | 0.595513 | 3_4:+80523682 | None:intergenic |
| AAGCCTGTCTTCTTCAGGAA+GGG | 0.600256 | 3_4:+80521337 | None:intergenic |
| AAACAGTGTTCAGAAATCTA+CGG | 0.604061 | 3_4:+80519047 | None:intergenic |
| AGTCAGAAGGATTCTACGCA+AGG | 0.604259 | 3_4:+80521307 | None:intergenic |
| ACAGGGTCATATTAAGTGCA+AGG | 0.612478 | 3_4:-80521655 | Msa0526620:CDS |
| AAGACCCATTGAAGCTCACA+GGG | 0.615492 | 3_4:-80521672 | Msa0526620:CDS |
| GAAGCCTGTCTTCTTCAGGA+AGG | 0.615749 | 3_4:+80521336 | None:intergenic |
| ATATAGACAATTCTCAAAAG+CGG | 0.616785 | 3_4:-80521379 | Msa0526620:CDS |
| CTCCGTTACCTTCTTGAATG+CGG | 0.621540 | 3_4:-80523971 | Msa0526620:CDS |
| CGAAGAGATGAGTCTCCAGA+TGG | 0.622590 | 3_4:+80519362 | None:intergenic |
| TAGAGGTTTAGCCATCTGCA+TGG | 0.622841 | 3_4:+80521214 | None:intergenic |
| ATCTCTCTCGTCAAGCTCAG+CGG | 0.623099 | 3_4:+80519247 | None:intergenic |
| CGTGTTCTTCAAGACAAGGA+AGG | 0.623560 | 3_4:+80521042 | None:intergenic |
| ATTCAAGAAGGTAACGGAGA+CGG | 0.624043 | 3_4:+80523975 | None:intergenic |
| GATGTTTCCTCTTAAGCGTG+CGG | 0.625855 | 3_4:-80520281 | Msa0526620:CDS |
| GTTTCCTCTTAAGCGTGCGG+TGG | 0.625968 | 3_4:-80520278 | Msa0526620:CDS |
| TGCAACGGATTCAAAGGAGG+AGG | 0.631815 | 3_4:+80523752 | None:intergenic |
| CTCTGCAACGGATTCAAAGG+AGG | 0.633098 | 3_4:+80523749 | None:intergenic |
| AGAGATGAGTCTCCAGATGG+TGG | 0.634349 | 3_4:+80519365 | None:intergenic |
| ACAAGCGTAGTAGAGAGCGG+TGG | 0.635729 | 3_4:+80523916 | None:intergenic |
| GTATGAAGGATTTCCATGAA+GGG | 0.635765 | 3_4:-80521088 | Msa0526620:CDS |
| TGAAGAACACGACATGAGTG+TGG | 0.636750 | 3_4:-80521030 | Msa0526620:CDS |
| GATGAGTCTCCAGATGGTGG+CGG | 0.638331 | 3_4:+80519368 | None:intergenic |
| GTGATTGGAGAGAAAGTCAA+GGG | 0.639852 | 3_4:+80519119 | None:intergenic |
| TCATTATTTAGGGAAGACCC+AGG | 0.639945 | 3_4:+80519320 | None:intergenic |
| CGCCGCATTCAAGAAGGTAA+CGG | 0.641866 | 3_4:+80523969 | None:intergenic |
| GTTGGAACTGAACCCTTGAG+TGG | 0.645789 | 3_4:+80521730 | None:intergenic |
| GAGACTGATTGGAAAGAGCG+CGG | 0.646559 | 3_4:-80521608 | Msa0526620:CDS |
| AGACAGATTAGAGATTGCTG+TGG | 0.649010 | 3_4:-80521516 | Msa0526620:CDS |
| GGTGATTGGAGAGAAAGTCA+AGG | 0.656518 | 3_4:+80519118 | None:intergenic |
| ATGTCGTGTTCTTCAAGACA+AGG | 0.664235 | 3_4:+80521038 | None:intergenic |
| CTGATGTGCCGAAATCGGAA+GGG | 0.674283 | 3_4:+80524059 | None:intergenic |
| TCACGAAGAGAACTCTGCAA+CGG | 0.676952 | 3_4:+80523737 | None:intergenic |
| TGTCTGCTAGCATTAACCAA+TGG | 0.682080 | 3_4:+80520206 | None:intergenic |
| ATGAGTTTCATCGACGACGG+CGG | 0.684567 | 3_4:-80524094 | Msa0526620:CDS |
| AGGATGAGTTTCATCGACGA+CGG | 0.689914 | 3_4:-80524097 | Msa0526620:CDS |
| GCGGTGAAGTAAGATTTGCA+CGG | 0.696641 | 3_4:-80521589 | Msa0526620:CDS |
| GAGACAAGCGTAGTAGAGAG+CGG | 0.707889 | 3_4:+80523913 | None:intergenic |
| TTGTTCGCCTGAAATTACAG+CGG | 0.710853 | 3_4:+80519097 | None:intergenic |
| TAAGAGCAGAGTAATGACAC+CGG | 0.716123 | 3_4:+80523816 | None:intergenic |
| GAAGCATACGAGCGGCATCG+AGG | 0.723315 | 3_4:+80523882 | None:intergenic |
| ATAAAGTTATTCTAGCATCG+AGG | 0.746606 | 3_4:-80521139 | Msa0526620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTTGATTT+AGG | - | chr3_4:80519454-80519473 | Msa0526620:CDS | 10.0% |
| !! | ATTATTAAAAGATATTTGAT+AGG | - | chr3_4:80520263-80520282 | Msa0526620:CDS | 10.0% |
| !!! | TTTATTTTATTATAGTATTC+AGG | + | chr3_4:80520456-80520475 | None:intergenic | 10.0% |
| !! | ATAAATACAACATTATTATT+TGG | + | chr3_4:80521238-80521257 | None:intergenic | 10.0% |
| !!! | AATTTTGAAATTGAAAATAT+CGG | - | chr3_4:80522080-80522099 | Msa0526620:intron | 10.0% |
| !! | GTATTATTATTCTATAAATT+TGG | - | chr3_4:80522170-80522189 | Msa0526620:intron | 10.0% |
| !!! | TTTCAAAATATTTTTTAAAC+AGG | - | chr3_4:80522697-80522716 | Msa0526620:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+AGG | - | chr3_4:80523163-80523182 | Msa0526620:intron | 10.0% |
| !! | ATATTATTCATAGATGATTA+TGG | - | chr3_4:80519613-80519632 | Msa0526620:intron | 15.0% |
| !! | TTCTCAATGATAAATTAAAT+AGG | - | chr3_4:80519717-80519736 | Msa0526620:intron | 15.0% |
| !! | TCTCAATGATAAATTAAATA+GGG | - | chr3_4:80519718-80519737 | Msa0526620:intron | 15.0% |
| !! | AAAGTTCAATACTATAATAA+GGG | + | chr3_4:80520991-80521010 | None:intergenic | 15.0% |
| !! | AAAAGTTCAATACTATAATA+AGG | + | chr3_4:80520992-80521011 | None:intergenic | 15.0% |
| !! | AATAATGTTGTATTTATACA+TGG | - | chr3_4:80521241-80521260 | Msa0526620:CDS | 15.0% |
| !! | AAATCATTTAACTATAAATC+AGG | + | chr3_4:80522201-80522220 | None:intergenic | 15.0% |
| !!! | ACTTTTAAAAGAAATCTTAA+TGG | + | chr3_4:80522654-80522673 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTCTTTTAAAAG+TGG | - | chr3_4:80522653-80522672 | Msa0526620:intron | 15.0% |
| !!! | AAATATTTCAATTTTGGTTT+AGG | + | chr3_4:80523104-80523123 | None:intergenic | 15.0% |
| !!! | ATTGGTAAATATTTCAATTT+TGG | + | chr3_4:80523110-80523129 | None:intergenic | 15.0% |
| !! | GACAAATAATTGTTTGTAAA+GGG | - | chr3_4:80519806-80519825 | Msa0526620:intron | 20.0% |
| !! | TTAAACTATGAAAAACTAGT+AGG | + | chr3_4:80520295-80520314 | None:intergenic | 20.0% |
| !!! | TATTATAGTATTCAGGTTTT+TGG | + | chr3_4:80520449-80520468 | None:intergenic | 20.0% |
| !!! | TTTGTTTTATTTCTCCTAAA+AGG | - | chr3_4:80520557-80520576 | Msa0526620:intron | 20.0% |
| !!! | TTGTTTTATTTCTCCTAAAA+GGG | - | chr3_4:80520558-80520577 | Msa0526620:intron | 20.0% |
| !! | AGAGAATTTAGATATATTGT+CGG | + | chr3_4:80520844-80520863 | None:intergenic | 20.0% |
| !!! | TCAAACTTTTTCTTGAAAAA+TGG | + | chr3_4:80521409-80521428 | None:intergenic | 20.0% |
| !! | CTGAATAAAAGAAATGTATA+AGG | + | chr3_4:80521501-80521520 | None:intergenic | 20.0% |
| !! | ATAGAATAATAATACAGTCA+CGG | + | chr3_4:80522165-80522184 | None:intergenic | 20.0% |
| !! | ACTTAAAATCTTTAGCAAAT+TGG | + | chr3_4:80522328-80522347 | None:intergenic | 20.0% |
| !! | TTATTCAATCTTTAGCAAAT+TGG | + | chr3_4:80522366-80522385 | None:intergenic | 20.0% |
| !! | TTTGAAAATCAGACAATAAA+AGG | + | chr3_4:80522684-80522703 | None:intergenic | 20.0% |
| !! | TAAAATAAGTGGAAATGAAA+AGG | + | chr3_4:80522964-80522983 | None:intergenic | 20.0% |
| !!! | TACTTATTAAAGGTTTTATC+TGG | - | chr3_4:80523040-80523059 | Msa0526620:intron | 20.0% |
| !! | ATTTCCTTGATCATTATTTA+GGG | + | chr3_4:80523728-80523747 | None:intergenic | 20.0% |
| !! | AAGAATTTGATTCTACCTTT+TGG | - | chr3_4:80519376-80519395 | Msa0526620:CDS | 25.0% |
| !! | ATTCTACCTTTTGGATTAAT+TGG | - | chr3_4:80519385-80519404 | Msa0526620:CDS | 25.0% |
| ! | CATAAACCAATTAATCCAAA+AGG | + | chr3_4:80519394-80519413 | None:intergenic | 25.0% |
| !! | ATTGGTTTATGAGAATGTTA+AGG | - | chr3_4:80519403-80519422 | Msa0526620:CDS | 25.0% |
| !! | AATGCACATTTTCATAACTT+AGG | + | chr3_4:80519584-80519603 | None:intergenic | 25.0% |
| ! | TTATTCATAGATGATTATGG+AGG | - | chr3_4:80519616-80519635 | Msa0526620:intron | 25.0% |
| !! | TTAGAAGCTCACTTTAATTT+AGG | - | chr3_4:80519674-80519693 | Msa0526620:intron | 25.0% |
| ! | CAATGATAAATTAAATAGGG+AGG | - | chr3_4:80519721-80519740 | Msa0526620:intron | 25.0% |
| !! | TAAATAGGGAGGATTTTATA+AGG | - | chr3_4:80519732-80519751 | Msa0526620:intron | 25.0% |
| ! | AAAGGAAATCATTAATGCAT+GGG | - | chr3_4:80519755-80519774 | Msa0526620:intron | 25.0% |
| !! | TGTAAAGGGTCTTATATTTA+CGG | - | chr3_4:80519784-80519803 | Msa0526620:intron | 25.0% |
| ! | GGACAAATAATTGTTTGTAA+AGG | - | chr3_4:80519805-80519824 | Msa0526620:intron | 25.0% |
| ! | GAGAATTTAGATATATTGTC+GGG | + | chr3_4:80520843-80520862 | None:intergenic | 25.0% |
| ! | TCTAATATTCTTACACAACA+AGG | - | chr3_4:80521067-80521086 | Msa0526620:CDS | 25.0% |
| ! | AACCATCAAATGATAAAACA+AGG | - | chr3_4:80521110-80521129 | Msa0526620:CDS | 25.0% |
| ! | ATATAGACAATTCTCAAAAG+CGG | - | chr3_4:80521656-80521675 | Msa0526620:CDS | 25.0% |
| !!! | AGATAATGGAATTGATGAAT+TGG | - | chr3_4:80521783-80521802 | Msa0526620:intron | 25.0% |
| !! | TTTGAAATTGAAAATATCGG+AGG | - | chr3_4:80522083-80522102 | Msa0526620:intron | 25.0% |
| ! | TTGAAATTGAAAATATCGGA+GGG | - | chr3_4:80522084-80522103 | Msa0526620:intron | 25.0% |
| ! | TAGAATAATAATACAGTCAC+GGG | + | chr3_4:80522164-80522183 | None:intergenic | 25.0% |
| !! | TTACATAAGATGATTTGCAA+TGG | - | chr3_4:80522240-80522259 | Msa0526620:intron | 25.0% |
| ! | CAGATTGAAAAACAAAAACT+AGG | + | chr3_4:80522278-80522297 | None:intergenic | 25.0% |
| !!! | CTAGTTTTTGTTTTTCAATC+TGG | - | chr3_4:80522276-80522295 | Msa0526620:intron | 25.0% |
| ! | AACAAACATGCATAAAACTA+AGG | + | chr3_4:80522410-80522429 | None:intergenic | 25.0% |
| ! | TTTATCCTGTATTTCTTTGT+TGG | - | chr3_4:80522574-80522593 | Msa0526620:intron | 25.0% |
| !!! | AATATTTTTTAAACAGGCTG+AGG | - | chr3_4:80522703-80522722 | Msa0526620:intron | 25.0% |
| ! | ACCTTTAATAAGTAACTACT+GGG | + | chr3_4:80523034-80523053 | None:intergenic | 25.0% |
| ! | AACCTTTAATAAGTAACTAC+TGG | + | chr3_4:80523035-80523054 | None:intergenic | 25.0% |
| !!! | TATTAAAGGTTTTATCTGGA+TGG | - | chr3_4:80523044-80523063 | Msa0526620:intron | 25.0% |
| ! | CCTTAATATACTTCTAACAA+TGG | + | chr3_4:80523472-80523491 | None:intergenic | 25.0% |
| !! | CCATTGTTAGAAGTATATTA+AGG | - | chr3_4:80523469-80523488 | Msa0526620:intron | 25.0% |
| ! | AGATTAAACAAGATATGATC+TGG | + | chr3_4:80523513-80523532 | None:intergenic | 25.0% |
| ! | TAATTCAAAATTACAGGCAA+TGG | + | chr3_4:80523605-80523624 | None:intergenic | 25.0% |
| ! | GGCAAATAATTCAAAATTAC+AGG | + | chr3_4:80523611-80523630 | None:intergenic | 25.0% |
| ! | GATTTCCTTGATCATTATTT+AGG | + | chr3_4:80523729-80523748 | None:intergenic | 25.0% |
| !! | TTGATGATTTACGTGATAAA+TGG | - | chr3_4:80523752-80523771 | Msa0526620:CDS | 25.0% |
| ! | TTACTCTGCTCTTAATTTGA+AGG | - | chr3_4:80519228-80519247 | Msa0526620:CDS | 30.0% |
| TTTATGAGAATGTTAAGGTG+TGG | - | chr3_4:80519408-80519427 | Msa0526620:CDS | 30.0% | |
| !! | GTGGAAGCTTTTTCTAATTA+AGG | - | chr3_4:80519427-80519446 | Msa0526620:CDS | 30.0% |
| GAAAGGAAATCATTAATGCA+TGG | - | chr3_4:80519754-80519773 | Msa0526620:intron | 30.0% | |
| ! | TTGTAAAGGGTCTTATGATT+AGG | - | chr3_4:80519819-80519838 | Msa0526620:intron | 30.0% |
| ! | TGTAAAGGGTCTTATGATTA+GGG | - | chr3_4:80519820-80519839 | Msa0526620:intron | 30.0% |
| TGAGAATTGAAATGACTGAT+TGG | - | chr3_4:80519915-80519934 | Msa0526620:intron | 30.0% | |
| ! | CATAAGTTTAGCTTCATAGT+TGG | - | chr3_4:80520101-80520120 | Msa0526620:intron | 30.0% |
| AAAAACCCACCAAAACAATA+TGG | - | chr3_4:80520374-80520393 | Msa0526620:intron | 30.0% | |
| AGCATTAGATATCTGATATC+AGG | + | chr3_4:80520804-80520823 | None:intergenic | 30.0% | |
| CATAAAACAATGAATCGAGT+AGG | - | chr3_4:80521037-80521056 | Msa0526620:CDS | 30.0% | |
| TTCTTACACAACAAGGAATT+AGG | - | chr3_4:80521074-80521093 | Msa0526620:CDS | 30.0% | |
| !!! | AGCCTTGTTTTATCATTTGA+TGG | + | chr3_4:80521115-80521134 | None:intergenic | 30.0% |
| TGTTGTATTTATACATGGTC+TGG | - | chr3_4:80521246-80521265 | Msa0526620:CDS | 30.0% | |
| GTTGTATTTATACATGGTCT+GGG | - | chr3_4:80521247-80521266 | Msa0526620:CDS | 30.0% | |
| ! | AGAAAAAGTTTGAGACTGAT+TGG | - | chr3_4:80521416-80521435 | Msa0526620:CDS | 30.0% |
| !!! | TCAAAAGCGGTTTATTTTAC+AGG | - | chr3_4:80521669-80521688 | Msa0526620:CDS | 30.0% |
| !!! | CAAAAGCGGTTTATTTTACA+GGG | - | chr3_4:80521670-80521689 | Msa0526620:CDS | 30.0% |
| CTCATAAGTGGAATTTGAAA+GGG | + | chr3_4:80521755-80521774 | None:intergenic | 30.0% | |
| TCTCATAAGTGGAATTTGAA+AGG | + | chr3_4:80521756-80521775 | None:intergenic | 30.0% | |
| TCAAATTCCACTTATGAGAA+TGG | - | chr3_4:80521757-80521776 | Msa0526620:intron | 30.0% | |
| TATGAGAATGGTCAAGATAA+TGG | - | chr3_4:80521769-80521788 | Msa0526620:intron | 30.0% | |
| GAATTGATGAATTGGTATCT+AGG | - | chr3_4:80521791-80521810 | Msa0526620:intron | 30.0% | |
| TCGATGCTAGAATAACTTTA+TGG | + | chr3_4:80521897-80521916 | None:intergenic | 30.0% | |
| ATAAAGTTATTCTAGCATCG+AGG | - | chr3_4:80521896-80521915 | Msa0526620:intron | 30.0% | |
| ATAATTCATCTTTCCCTTCA+TGG | + | chr3_4:80521963-80521982 | None:intergenic | 30.0% | |
| ATTTCAAAATTCCACAGTGA+AGG | + | chr3_4:80522071-80522090 | None:intergenic | 30.0% | |
| TAGTATGCCAATAATTACCA+CGG | - | chr3_4:80522110-80522129 | Msa0526620:intron | 30.0% | |
| TAAGTTACCGTGGTAATTAT+TGG | + | chr3_4:80522120-80522139 | None:intergenic | 30.0% | |
| ATGCATAAAACTAAGGCAAT+TGG | + | chr3_4:80522403-80522422 | None:intergenic | 30.0% | |
| ATAACAACACAAATATGACC+TGG | + | chr3_4:80522439-80522458 | None:intergenic | 30.0% | |
| ATTTATTTCCTGCAAACGAT+CGG | + | chr3_4:80522610-80522629 | None:intergenic | 30.0% | |
| TAAGATGAAGAAAGAGAGAT+TGG | + | chr3_4:80522872-80522891 | None:intergenic | 30.0% | |
| CTTTCTTCATCTTACATTGA+TGG | - | chr3_4:80522878-80522897 | Msa0526620:intron | 30.0% | |
| ! | ATAGGGATGTCTAAAATAAG+TGG | + | chr3_4:80522975-80522994 | None:intergenic | 30.0% |
| CTCTAGTAAGTAGTAACATA+GGG | + | chr3_4:80522992-80523011 | None:intergenic | 30.0% | |
| CCTTTAATAAGTAACTACTG+GGG | + | chr3_4:80523033-80523052 | None:intergenic | 30.0% | |
| GCATCTTAATTGTAGATCAT+TGG | + | chr3_4:80523128-80523147 | None:intergenic | 30.0% | |
| ! | TTTATGACTGCACATGTTTT+AGG | - | chr3_4:80523231-80523250 | Msa0526620:intron | 30.0% |
| TTGACTATTTGTTCATTTCC+AGG | - | chr3_4:80523542-80523561 | Msa0526620:intron | 30.0% | |
| TATTTGTTCATTTCCAGGTA+TGG | - | chr3_4:80523547-80523566 | Msa0526620:intron | 30.0% | |
| TCTTCCCTAAATAATGATCA+AGG | - | chr3_4:80523721-80523740 | Msa0526620:CDS | 30.0% | |
| AAACAGTGTTCAGAAATCTA+CGG | + | chr3_4:80523991-80524010 | None:intergenic | 30.0% | |
| !!! | GATTTCTGAACACTGTTTTT+TGG | - | chr3_4:80523993-80524012 | Msa0526620:CDS | 30.0% |
| TGCGCATAATCTTAACAAGA+AGG | - | chr3_4:80518918-80518937 | Msa0526620:three_prime_UTR | 35.0% | |
| !!! | CGTTTGGGACTTTTTTTAAG+GGG | + | chr3_4:80519003-80519022 | None:intergenic | 35.0% |
| !!! | CCGTTTGGGACTTTTTTTAA+GGG | + | chr3_4:80519004-80519023 | None:intergenic | 35.0% |
| CCCTTAAAAAAAGTCCCAAA+CGG | - | chr3_4:80519001-80519020 | Msa0526620:three_prime_UTR | 35.0% | |
| ! | CTGCTCTTAATTTGAAGGTT+AGG | - | chr3_4:80519233-80519252 | Msa0526620:CDS | 35.0% |
| GGTAGAATCAAATTCTTACC+AGG | + | chr3_4:80519373-80519392 | None:intergenic | 35.0% | |
| ACAAAAACTGAAACTCTCGT+AGG | + | chr3_4:80519543-80519562 | None:intergenic | 35.0% | |
| ! | AGGGAGGATTTTATAAGGAA+AGG | - | chr3_4:80519737-80519756 | Msa0526620:intron | 35.0% |
| ! | ATGCATGGGACATTTTGTAA+AGG | - | chr3_4:80519769-80519788 | Msa0526620:intron | 35.0% |
| ! | TGCATGGGACATTTTGTAAA+GGG | - | chr3_4:80519770-80519789 | Msa0526620:intron | 35.0% |
| TTGAAGGAGGATACAATGAA+GGG | - | chr3_4:80519860-80519879 | Msa0526620:intron | 35.0% | |
| CAACAGTCTGTGTAACATTT+AGG | + | chr3_4:80519953-80519972 | None:intergenic | 35.0% | |
| ! | ATGTTTTCAACGACAGAATG+CGG | - | chr3_4:80520335-80520354 | Msa0526620:intron | 35.0% |
| !!! | GTCTACCATATTGTTTTGGT+GGG | + | chr3_4:80520382-80520401 | None:intergenic | 35.0% |
| CACCAAAACAATATGGTAGA+CGG | - | chr3_4:80520381-80520400 | Msa0526620:intron | 35.0% | |
| ! | ATATCGTCTCACTAGGTTTT+GGG | - | chr3_4:80520529-80520548 | Msa0526620:intron | 35.0% |
| TTGACCAACATTAGTGATCT+AGG | + | chr3_4:80520612-80520631 | None:intergenic | 35.0% | |
| TGGGAGTTTCATTCCTAATT+AGG | + | chr3_4:80520698-80520717 | None:intergenic | 35.0% | |
| GAACATCACAAGGGATAAAA+GGG | - | chr3_4:80520743-80520762 | Msa0526620:intron | 35.0% | |
| TGATATCAGGTTCCTATTTG+AGG | + | chr3_4:80520791-80520810 | None:intergenic | 35.0% | |
| ATAGGTATTTCATCCACTCA+AGG | - | chr3_4:80521292-80521311 | Msa0526620:CDS | 35.0% | |
| TAGGTATTTCATCCACTCAA+GGG | - | chr3_4:80521293-80521312 | Msa0526620:CDS | 35.0% | |
| TACAGTAAAAACCACATCTG+GGG | + | chr3_4:80521338-80521357 | None:intergenic | 35.0% | |
| GTACAGTAAAAACCACATCT+GGG | + | chr3_4:80521339-80521358 | None:intergenic | 35.0% | |
| TGTACAGTAAAAACCACATC+TGG | + | chr3_4:80521340-80521359 | None:intergenic | 35.0% | |
| ! | GATGTGGTTTTTACTGTACA+AGG | - | chr3_4:80521340-80521359 | Msa0526620:CDS | 35.0% |
| ATCTTGACCATTCTCATAAG+TGG | + | chr3_4:80521767-80521786 | None:intergenic | 35.0% | |
| TGATGAATTGGTATCTAGGA+TGG | - | chr3_4:80521795-80521814 | Msa0526620:intron | 35.0% | |
| ACATCAGCAAGATCATTTAG+AGG | + | chr3_4:80521841-80521860 | None:intergenic | 35.0% | |
| CTAGAATAACTTTATGGCAG+CGG | + | chr3_4:80521891-80521910 | None:intergenic | 35.0% | |
| GTATGAAGGATTTCCATGAA+GGG | - | chr3_4:80521947-80521966 | Msa0526620:intron | 35.0% | |
| AAGATGATCTTAAGTTACCG+TGG | + | chr3_4:80522130-80522149 | None:intergenic | 35.0% | |
| TTTAGCAAATTGGTTGCGTT+TGG | + | chr3_4:80522318-80522337 | None:intergenic | 35.0% | |
| !!! | TGCATGTTTGTTTTTGTACC+AGG | - | chr3_4:80522418-80522437 | Msa0526620:intron | 35.0% |
| TCTCATAAACTTCAAGCAGA+AGG | + | chr3_4:80522496-80522515 | None:intergenic | 35.0% | |
| CTGAACCAACAAAGAAATAC+AGG | + | chr3_4:80522582-80522601 | None:intergenic | 35.0% | |
| !! | CTGTATTTCTTTGTTGGTTC+AGG | - | chr3_4:80522580-80522599 | Msa0526620:intron | 35.0% |
| GGATGTATAAAAACCTGATC+TGG | + | chr3_4:80522633-80522652 | None:intergenic | 35.0% | |
| GCTCTAGTAAGTAGTAACAT+AGG | + | chr3_4:80522993-80523012 | None:intergenic | 35.0% | |
| CCCCAGTAGTTACTTATTAA+AGG | - | chr3_4:80523030-80523049 | Msa0526620:intron | 35.0% | |
| ATGGTTGCTGAAATGTATTC+TGG | - | chr3_4:80523063-80523082 | Msa0526620:intron | 35.0% | |
| TCTCCTTAATTCATCTACCA+CGG | - | chr3_4:80523267-80523286 | Msa0526620:intron | 35.0% | |
| AAATGACCTTAGGGTTATGT+TGG | - | chr3_4:80523294-80523313 | Msa0526620:intron | 35.0% | |
| AATCTTCAAAACACCATACC+TGG | + | chr3_4:80523563-80523582 | None:intergenic | 35.0% | |
| !!! | GGTATGGTGTTTTGAAGATT+CGG | - | chr3_4:80523563-80523582 | Msa0526620:intron | 35.0% |
| !!! | GTATGGTGTTTTGAAGATTC+GGG | - | chr3_4:80523564-80523583 | Msa0526620:intron | 35.0% |
| TTGCCGATACAAAAGAATTC+CGG | - | chr3_4:80523626-80523645 | Msa0526620:intron | 35.0% | |
| CATCTGCTCTCTATAAACTA+CGG | + | chr3_4:80524047-80524066 | None:intergenic | 35.0% | |
| !!! | GCCGTTTGGGACTTTTTTTA+AGG | + | chr3_4:80519005-80519024 | None:intergenic | 40.0% |
| !! | ATTCAAGAAGGTAACGGAGA+CGG | + | chr3_4:80519063-80519082 | None:intergenic | 40.0% |
| TAAGAGCAGAGTAATGACAC+CGG | + | chr3_4:80519222-80519241 | None:intergenic | 40.0% | |
| GAGAGAGCTTATGAGAAAGT+TGG | - | chr3_4:80519647-80519666 | Msa0526620:intron | 40.0% | |
| ! | AAGGGTCTTATGATTAGGGA+TGG | - | chr3_4:80519824-80519843 | Msa0526620:intron | 40.0% |
| GTCTTATGATTAGGGATGGA+GGG | - | chr3_4:80519828-80519847 | Msa0526620:intron | 40.0% | |
| GTTGAAGGAGGATACAATGA+AGG | - | chr3_4:80519859-80519878 | Msa0526620:intron | 40.0% | |
| ATGTTACACAGACTGTTGCT+AGG | - | chr3_4:80519955-80519974 | Msa0526620:intron | 40.0% | |
| TGTTACACAGACTGTTGCTA+GGG | - | chr3_4:80519956-80519975 | Msa0526620:intron | 40.0% | |
| GTTGTGTTAATGTGTCGTGT+CGG | + | chr3_4:80520013-80520032 | None:intergenic | 40.0% | |
| !! | CGCTGCTGTAGTTTTTGAAA+TGG | + | chr3_4:80520077-80520096 | None:intergenic | 40.0% |
| TTCAAAAACTACAGCAGCGT+CGG | - | chr3_4:80520078-80520097 | Msa0526620:intron | 40.0% | |
| GTACTGTTTGTGCAATGGTA+AGG | - | chr3_4:80520191-80520210 | Msa0526620:intron | 40.0% | |
| !!! | CGTCTACCATATTGTTTTGG+TGG | + | chr3_4:80520383-80520402 | None:intergenic | 40.0% |
| ! | TGCCGTCTACCATATTGTTT+TGG | + | chr3_4:80520386-80520405 | None:intergenic | 40.0% |
| ! | GCAGTCTATGATGAAAGCAT+TGG | - | chr3_4:80520408-80520427 | Msa0526620:intron | 40.0% |
| TAACAAATCGAAGTTGCACC+AGG | - | chr3_4:80520503-80520522 | Msa0526620:intron | 40.0% | |
| ! | CATATCGTCTCACTAGGTTT+TGG | - | chr3_4:80520528-80520547 | Msa0526620:intron | 40.0% |
| ! | GCAATGAAGCAAACCCTTTT+AGG | + | chr3_4:80520574-80520593 | None:intergenic | 40.0% |
| ! | GGTTTGCTTCATTGCTTAAG+TGG | - | chr3_4:80520579-80520598 | Msa0526620:intron | 40.0% |
| TTGCTTCATTGCTTAAGTGG+AGG | - | chr3_4:80520582-80520601 | Msa0526620:intron | 40.0% | |
| CTCTCCTAGATCACTAATGT+TGG | - | chr3_4:80520605-80520624 | Msa0526620:intron | 40.0% | |
| AATTAGGCACCAGCCATATT+TGG | + | chr3_4:80520682-80520701 | None:intergenic | 40.0% | |
| AATATGGCTGGTGCCTAATT+AGG | - | chr3_4:80520682-80520701 | Msa0526620:intron | 40.0% | |
| AGGAATGAAACTCCCAGAAA+AGG | - | chr3_4:80520702-80520721 | Msa0526620:intron | 40.0% | |
| TGAAACTCCCAGAAAAGGAA+AGG | - | chr3_4:80520707-80520726 | Msa0526620:intron | 40.0% | |
| TCCCAGAAAAGGAAAGGATA+TGG | - | chr3_4:80520713-80520732 | Msa0526620:intron | 40.0% | |
| ! | CCCATATCCTTTCCTTTTCT+GGG | + | chr3_4:80520717-80520736 | None:intergenic | 40.0% |
| CCCAGAAAAGGAAAGGATAT+GGG | - | chr3_4:80520714-80520733 | Msa0526620:intron | 40.0% | |
| ! | ACCCATATCCTTTCCTTTTC+TGG | + | chr3_4:80520718-80520737 | None:intergenic | 40.0% |
| AAGGAAAGGATATGGGTATG+AGG | - | chr3_4:80520721-80520740 | Msa0526620:intron | 40.0% | |
| GGAACATCACAAGGGATAAA+AGG | - | chr3_4:80520742-80520761 | Msa0526620:intron | 40.0% | |
| ! | AAGGGATAAAAGGGTTTGCT+TGG | - | chr3_4:80520752-80520771 | Msa0526620:intron | 40.0% |
| ! | AGGGATAAAAGGGTTTGCTT+GGG | - | chr3_4:80520753-80520772 | Msa0526620:intron | 40.0% |
| TATCAGGTTCCTATTTGAGG+TGG | + | chr3_4:80520788-80520807 | None:intergenic | 40.0% | |
| ACAGTAAAAACCACATCTGG+GGG | + | chr3_4:80521337-80521356 | None:intergenic | 40.0% | |
| ACAGGGTCATATTAAGTGCA+AGG | - | chr3_4:80521380-80521399 | Msa0526620:CDS | 40.0% | |
| TGTATAAGGCTACAAAGTGC+AGG | + | chr3_4:80521487-80521506 | None:intergenic | 40.0% | |
| AGACAGATTAGAGATTGCTG+TGG | - | chr3_4:80521519-80521538 | Msa0526620:CDS | 40.0% | |
| AGAGATTGCTGTGGATGATA+TGG | - | chr3_4:80521528-80521547 | Msa0526620:CDS | 40.0% | |
| AATTTGAAAGGGCAGTCAGA+AGG | + | chr3_4:80521744-80521763 | None:intergenic | 40.0% | |
| CGTATGAAGGATTTCCATGA+AGG | - | chr3_4:80521946-80521965 | Msa0526620:intron | 40.0% | |
| ATGTCGTGTTCTTCAAGACA+AGG | + | chr3_4:80522000-80522019 | None:intergenic | 40.0% | |
| TAAGTCTCTTTCCTTCACTG+TGG | - | chr3_4:80522057-80522076 | Msa0526620:intron | 40.0% | |
| GCAGGAAATAAATCCAGATC+AGG | - | chr3_4:80522617-80522636 | Msa0526620:intron | 40.0% | |
| TGTCTGCTAGCATTAACCAA+TGG | + | chr3_4:80522832-80522851 | None:intergenic | 40.0% | |
| CATATGTAATTCACCACGAC+AGG | + | chr3_4:80523386-80523405 | None:intergenic | 40.0% | |
| TGCCGATACAAAAGAATTCC+GGG | - | chr3_4:80523627-80523646 | Msa0526620:intron | 40.0% | |
| ! | TGCCCGGAATTCTTTTGTAT+CGG | + | chr3_4:80523632-80523651 | None:intergenic | 40.0% |
| TCATTATTTAGGGAAGACCC+AGG | + | chr3_4:80523718-80523737 | None:intergenic | 40.0% | |
| CAACAACCATAAGCATCTCT+AGG | + | chr3_4:80523840-80523859 | None:intergenic | 40.0% | |
| GTGATTGGAGAGAAAGTCAA+GGG | + | chr3_4:80523919-80523938 | None:intergenic | 40.0% | |
| TTGTTCGCCTGAAATTACAG+CGG | + | chr3_4:80523941-80523960 | None:intergenic | 40.0% | |
| GGCGAACAAACTGTAATTTC+AGG | - | chr3_4:80523952-80523971 | Msa0526620:CDS | 40.0% | |
| TAGAGAGCAGATGCTAAGTT+AGG | - | chr3_4:80524054-80524073 | Msa0526620:CDS | 40.0% | |
| ! | AGATGCTAAGTTAGGTTGCT+TGG | - | chr3_4:80524062-80524081 | Msa0526620:CDS | 40.0% |
| ! | TTGCTTGGAGTGCTTAAGTT+GGG | - | chr3_4:80524077-80524096 | Msa0526620:CDS | 40.0% |
| AGGATGAGTTTCATCGACGA+CGG | - | chr3_4:80518938-80518957 | Msa0526620:three_prime_UTR | 45.0% | |
| GACTTAGACCCTTCCGATTT+CGG | - | chr3_4:80518968-80518987 | Msa0526620:three_prime_UTR | 45.0% | |
| CTCCGTTACCTTCTTGAATG+CGG | - | chr3_4:80519064-80519083 | Msa0526620:CDS | 45.0% | |
| !! | GTTTTCGAGAAGCATACGAG+CGG | + | chr3_4:80519164-80519183 | None:intergenic | 45.0% |
| GCTCGTATGCTTCTCGAAAA+CGG | - | chr3_4:80519163-80519182 | Msa0526620:CDS | 45.0% | |
| ! | GAACTCTGCAACGGATTCAA+AGG | + | chr3_4:80519292-80519311 | None:intergenic | 45.0% |
| TCACGAAGAGAACTCTGCAA+CGG | + | chr3_4:80519301-80519320 | None:intergenic | 45.0% | |
| AAATCCACCGGAATGCGAAT+TGG | + | chr3_4:80519344-80519363 | None:intergenic | 45.0% | |
| ACCAGGAAACTGAAATCCAC+CGG | + | chr3_4:80519356-80519375 | None:intergenic | 45.0% | |
| ! | GGTCTTATGATTAGGGATGG+AGG | - | chr3_4:80519827-80519846 | Msa0526620:intron | 45.0% |
| ! | TGGAGGGTGTAGAAAGTTGA+AGG | - | chr3_4:80519844-80519863 | Msa0526620:intron | 45.0% |
| AGGGTGTAGAAAGTTGAAGG+AGG | - | chr3_4:80519847-80519866 | Msa0526620:intron | 45.0% | |
| AAGGGCTTAGTTGTTGTCAG+TGG | - | chr3_4:80519878-80519897 | Msa0526620:intron | 45.0% | |
| AAGACATTGTCCTCCAAGCA+GGG | + | chr3_4:80520141-80520160 | None:intergenic | 45.0% | |
| AAAGACATTGTCCTCCAAGC+AGG | + | chr3_4:80520142-80520161 | None:intergenic | 45.0% | |
| TGCCTGCAAAACAAGACATG+AGG | - | chr3_4:80520162-80520181 | Msa0526620:intron | 45.0% | |
| GCCTGCAAAACAAGACATGA+GGG | - | chr3_4:80520163-80520182 | Msa0526620:intron | 45.0% | |
| CCTGCAAAACAAGACATGAG+GGG | - | chr3_4:80520164-80520183 | Msa0526620:intron | 45.0% | |
| CAAAACAAGACATGAGGGGT+GGG | - | chr3_4:80520168-80520187 | Msa0526620:intron | 45.0% | |
| AAAACAAGACATGAGGGGTG+GGG | - | chr3_4:80520169-80520188 | Msa0526620:intron | 45.0% | |
| TGGGTATGAGGAACATCACA+AGG | - | chr3_4:80520733-80520752 | Msa0526620:intron | 45.0% | |
| GGGTATGAGGAACATCACAA+GGG | - | chr3_4:80520734-80520753 | Msa0526620:intron | 45.0% | |
| !! | AAGAGTGCTCCACCTCAAAT+AGG | - | chr3_4:80520776-80520795 | Msa0526620:intron | 45.0% |
| ACACACACACACATGTGAGA+TGG | - | chr3_4:80521181-80521200 | Msa0526620:CDS | 45.0% | |
| CACACACACACATGTGAGAT+GGG | - | chr3_4:80521182-80521201 | Msa0526620:CDS | 45.0% | |
| ACACACACACATGTGAGATG+GGG | - | chr3_4:80521183-80521202 | Msa0526620:CDS | 45.0% | |
| AAGACCCATTGAAGCTCACA+GGG | - | chr3_4:80521363-80521382 | Msa0526620:CDS | 45.0% | |
| ATGACCCTGTGAGCTTCAAT+GGG | + | chr3_4:80521370-80521389 | None:intergenic | 45.0% | |
| TATGACCCTGTGAGCTTCAA+TGG | + | chr3_4:80521371-80521390 | None:intergenic | 45.0% | |
| GCGGTGAAGTAAGATTTGCA+CGG | - | chr3_4:80521446-80521465 | Msa0526620:CDS | 45.0% | |
| CGGTGAAGTAAGATTTGCAC+GGG | - | chr3_4:80521447-80521466 | Msa0526620:CDS | 45.0% | |
| TATCCCTTCCTGAAGAAGAC+AGG | - | chr3_4:80521695-80521714 | Msa0526620:CDS | 45.0% | |
| AAGCCTGTCTTCTTCAGGAA+GGG | + | chr3_4:80521701-80521720 | None:intergenic | 45.0% | |
| AGTCAGAAGGATTCTACGCA+AGG | + | chr3_4:80521731-80521750 | None:intergenic | 45.0% | |
| TAGAGGTTTAGCCATCTGCA+TGG | + | chr3_4:80521824-80521843 | None:intergenic | 45.0% | |
| AGCAAGACTCTCACGTATGA+AGG | - | chr3_4:80521933-80521952 | Msa0526620:intron | 45.0% | |
| CGTGTTCTTCAAGACAAGGA+AGG | + | chr3_4:80521996-80522015 | None:intergenic | 45.0% | |
| TGAAGAACACGACATGAGTG+TGG | - | chr3_4:80522005-80522024 | Msa0526620:intron | 45.0% | |
| GATGTTTCCTCTTAAGCGTG+CGG | - | chr3_4:80522754-80522773 | Msa0526620:intron | 45.0% | |
| ! | CTTCAGGTGATGCCATTTCT+AGG | + | chr3_4:80522802-80522821 | None:intergenic | 45.0% |
| AACCAATGGCAAAGCTCTTC+AGG | + | chr3_4:80522818-80522837 | None:intergenic | 45.0% | |
| GAGCCGTGGTAGATGAATTA+AGG | + | chr3_4:80523273-80523292 | None:intergenic | 45.0% | |
| CACGGCTCAAAATGACCTTA+GGG | - | chr3_4:80523285-80523304 | Msa0526620:intron | 45.0% | |
| CCTCTTCCAACATAACCCTA+AGG | + | chr3_4:80523303-80523322 | None:intergenic | 45.0% | |
| CCTTAGGGTTATGTTGGAAG+AGG | - | chr3_4:80523300-80523319 | Msa0526620:intron | 45.0% | |
| TACTCAGCAGTTAGGCAGTT+AGG | + | chr3_4:80523357-80523376 | None:intergenic | 45.0% | |
| GGCTACAATACTCAGCAGTT+AGG | + | chr3_4:80523365-80523384 | None:intergenic | 45.0% | |
| GTAAAGTCAACAGCATTGCC+CGG | + | chr3_4:80523648-80523667 | None:intergenic | 45.0% | |
| GCAGAGCATGAAAAGTCATC+AGG | - | chr3_4:80523859-80523878 | Msa0526620:CDS | 45.0% | |
| GGTGATTGGAGAGAAAGTCA+AGG | + | chr3_4:80523920-80523939 | None:intergenic | 45.0% | |
| CCTGAAATTACAGCGGTGAT+TGG | + | chr3_4:80523934-80523953 | None:intergenic | 45.0% | |
| CCAATCACCGCTGTAATTTC+AGG | - | chr3_4:80523931-80523950 | Msa0526620:CDS | 45.0% | |
| ! | GTTGCTTGGAGTGCTTAAGT+TGG | - | chr3_4:80524076-80524095 | Msa0526620:CDS | 45.0% |
| !! | AATATTTATTATATTTGAAT+AGG | - | chr3_4:80521274-80521293 | Msa0526620:CDS | 5.0% |
| !! | ATGAAAAAAAAAAAAAAAAA+AGG | - | chr3_4:80523160-80523179 | Msa0526620:intron | 5.0% |
| ATGAGTTTCATCGACGACGG+CGG | - | chr3_4:80518941-80518960 | Msa0526620:three_prime_UTR | 50.0% | |
| CTGATGTGCCGAAATCGGAA+GGG | + | chr3_4:80518979-80518998 | None:intergenic | 50.0% | |
| ACTGATGTGCCGAAATCGGA+AGG | + | chr3_4:80518980-80518999 | None:intergenic | 50.0% | |
| CTTGGAAAACGTCGCCGTTT+GGG | + | chr3_4:80519018-80519037 | None:intergenic | 50.0% | |
| CGCCGCATTCAAGAAGGTAA+CGG | + | chr3_4:80519069-80519088 | None:intergenic | 50.0% | |
| CGTTAACGCCGCATTCAAGA+AGG | + | chr3_4:80519075-80519094 | None:intergenic | 50.0% | |
| GAGACAAGCGTAGTAGAGAG+CGG | + | chr3_4:80519125-80519144 | None:intergenic | 50.0% | |
| TGCTCCGAACACACGTTTGA+CGG | - | chr3_4:80519193-80519212 | Msa0526620:CDS | 50.0% | |
| GTCACCGTCAAACGTGTGTT+CGG | + | chr3_4:80519200-80519219 | None:intergenic | 50.0% | |
| AACACACGTTTGACGGTGAC+CGG | - | chr3_4:80519200-80519219 | Msa0526620:CDS | 50.0% | |
| ! | TGCAACGGATTCAAAGGAGG+AGG | + | chr3_4:80519286-80519305 | None:intergenic | 50.0% |
| ! | CTCTGCAACGGATTCAAAGG+AGG | + | chr3_4:80519289-80519308 | None:intergenic | 50.0% |
| ! | TCCGGTGGATTTCAGTTTCC+TGG | - | chr3_4:80519352-80519371 | Msa0526620:CDS | 50.0% |
| ! | TGTTAATGTGTCGTGTCGGC+TGG | + | chr3_4:80520009-80520028 | None:intergenic | 50.0% |
| GTGCTTAATCTTCCCCTGCT+TGG | - | chr3_4:80520125-80520144 | Msa0526620:intron | 50.0% | |
| CTTAATCTTCCCCTGCTTGG+AGG | - | chr3_4:80520128-80520147 | Msa0526620:intron | 50.0% | |
| AGACATTGTCCTCCAAGCAG+GGG | + | chr3_4:80520140-80520159 | None:intergenic | 50.0% | |
| !!! | CCCCTCATGTCTTGTTTTGC+AGG | + | chr3_4:80520167-80520186 | None:intergenic | 50.0% |
| GCAAAACAAGACATGAGGGG+TGG | - | chr3_4:80520167-80520186 | Msa0526620:intron | 50.0% | |
| !! | GTGGGGTACTGTTTGTGCAA+TGG | - | chr3_4:80520186-80520205 | Msa0526620:intron | 50.0% |
| CTAGTGAGACGATATGTGCC+TGG | + | chr3_4:80520524-80520543 | None:intergenic | 50.0% | |
| CAGGCACATATCGTCTCACT+AGG | - | chr3_4:80520522-80520541 | Msa0526620:intron | 50.0% | |
| !!! | TCGTCTCACTAGGTTTTGGG+TGG | - | chr3_4:80520532-80520551 | Msa0526620:intron | 50.0% |
| !!! | CGTCTCACTAGGTTTTGGGT+GGG | - | chr3_4:80520533-80520552 | Msa0526620:intron | 50.0% |
| TACCACGGTCGTGCCAAATA+TGG | - | chr3_4:80520666-80520685 | Msa0526620:intron | 50.0% | |
| GTTGGAACTGAACCCTTGAG+TGG | + | chr3_4:80521308-80521327 | None:intergenic | 50.0% | |
| CACATCTGGGGGAAAGTAGT+TGG | + | chr3_4:80521326-80521345 | None:intergenic | 50.0% | |
| CAACTACTTTCCCCCAGATG+TGG | - | chr3_4:80521324-80521343 | Msa0526620:CDS | 50.0% | |
| GAAGACCCATTGAAGCTCAC+AGG | - | chr3_4:80521362-80521381 | Msa0526620:CDS | 50.0% | |
| GAGACTGATTGGAAAGAGCG+CGG | - | chr3_4:80521427-80521446 | Msa0526620:CDS | 50.0% | |
| GAAGCCTGTCTTCTTCAGGA+AGG | + | chr3_4:80521702-80521721 | None:intergenic | 50.0% | |
| TAGGATGGATGCCATGCAGA+TGG | - | chr3_4:80521810-80521829 | Msa0526620:intron | 50.0% | |
| !! | CTTGGTGCCACACCTAGAAA+TGG | - | chr3_4:80522787-80522806 | Msa0526620:intron | 50.0% |
| ! | GGTGATGCCATTTCTAGGTG+TGG | + | chr3_4:80522797-80522816 | None:intergenic | 50.0% |
| CACCTGAAGAGCTTTGCCAT+TGG | - | chr3_4:80522813-80522832 | Msa0526620:intron | 50.0% | |
| !! | CCTAAGGTCATTTTGAGCCG+TGG | + | chr3_4:80523287-80523306 | None:intergenic | 50.0% |
| CCACGGCTCAAAATGACCTT+AGG | - | chr3_4:80523284-80523303 | Msa0526620:intron | 50.0% | |
| ! | CTGAGTATTGTAGCCTGTCG+TGG | - | chr3_4:80523370-80523389 | Msa0526620:intron | 50.0% |
| TTGACTTTACCGCCACCATC+TGG | - | chr3_4:80523658-80523677 | Msa0526620:intron | 50.0% | |
| AGAGATGAGTCTCCAGATGG+TGG | + | chr3_4:80523673-80523692 | None:intergenic | 50.0% | |
| CGAAGAGATGAGTCTCCAGA+TGG | + | chr3_4:80523676-80523695 | None:intergenic | 50.0% | |
| ATCTCTCTCGTCAAGCTCAG+CGG | + | chr3_4:80523791-80523810 | None:intergenic | 50.0% | |
| CAAGCGCCTAGAGATGCTTA+TGG | - | chr3_4:80523831-80523850 | Msa0526620:CDS | 50.0% | |
| GGGGACTGATGTGCCGAAAT+CGG | + | chr3_4:80518984-80519003 | None:intergenic | 55.0% | |
| GCTTGGAAAACGTCGCCGTT+TGG | + | chr3_4:80519019-80519038 | None:intergenic | 55.0% | |
| ACGTCAACGCACGTGACCAA+TGG | - | chr3_4:80519092-80519111 | Msa0526620:CDS | 55.0% | |
| CGTCAACGCACGTGACCAAT+GGG | - | chr3_4:80519093-80519112 | Msa0526620:CDS | 55.0% | |
| ACAAGCGTAGTAGAGAGCGG+TGG | + | chr3_4:80519122-80519141 | None:intergenic | 55.0% | |
| CTCTACTACGCTTGTCTCGC+CGG | - | chr3_4:80519127-80519146 | Msa0526620:CDS | 55.0% | |
| TGTCCCGCCAATTCGCATTC+CGG | - | chr3_4:80519334-80519353 | Msa0526620:CDS | 55.0% | |
| TCCACCGGAATGCGAATTGG+CGG | + | chr3_4:80519341-80519360 | None:intergenic | 55.0% | |
| GTGCCTGACGAGTCTTACCA+CGG | - | chr3_4:80520651-80520670 | Msa0526620:intron | 55.0% | |
| AGCCATATTTGGCACGACCG+TGG | + | chr3_4:80520671-80520690 | None:intergenic | 55.0% | |
| ACGGTCGTGCCAAATATGGC+TGG | - | chr3_4:80520670-80520689 | Msa0526620:intron | 55.0% | |
| GCAGGAAGCCTGTCTTCTTC+AGG | + | chr3_4:80521706-80521725 | None:intergenic | 55.0% | |
| AGGATTCTACGCAAGGCTGC+AGG | + | chr3_4:80521724-80521743 | None:intergenic | 55.0% | |
| CAGGTACACCGATCGTTTGC+AGG | - | chr3_4:80522599-80522618 | Msa0526620:intron | 55.0% | |
| GTTTCCTCTTAAGCGTGCGG+TGG | - | chr3_4:80522757-80522776 | Msa0526620:intron | 55.0% | |
| ! | GATGAGTCTCCAGATGGTGG+CGG | + | chr3_4:80523670-80523689 | None:intergenic | 55.0% |
| !! | GAAGGTAACGGAGACGGTCG+AGG | + | chr3_4:80519057-80519076 | None:intergenic | 60.0% |
| AGAGAGCGGTGGAGTCCCAT+TGG | + | chr3_4:80519111-80519130 | None:intergenic | 60.0% | |
| GAAGCATACGAGCGGCATCG+AGG | + | chr3_4:80519156-80519175 | None:intergenic | 60.0% | |
| CCACCGGAATGCGAATTGGC+GGG | + | chr3_4:80519340-80519359 | None:intergenic | 60.0% | |
| CGACCGTGGTAAGACTCGTC+AGG | + | chr3_4:80520657-80520676 | None:intergenic | 60.0% | |
| TCAGCCACCGCACGCTTAAG+AGG | + | chr3_4:80522764-80522783 | None:intergenic | 60.0% | |
| ACAACTGTCCCGAGCATGCC+TGG | - | chr3_4:80523697-80523716 | Msa0526620:CDS | 60.0% | |
| CAACTGTCCCGAGCATGCCT+GGG | - | chr3_4:80523698-80523717 | Msa0526620:CDS | 60.0% | |
| AGGGAAGACCCAGGCATGCT+CGG | + | chr3_4:80523709-80523728 | None:intergenic | 60.0% | |
| ! | GTTTTCCAAGCCTCCCGCGC+CGG | - | chr3_4:80519028-80519047 | Msa0526620:three_prime_UTR | 65.0% |
| ! | ACGAGCGGCATCGAGGTGAC+CGG | + | chr3_4:80519149-80519168 | None:intergenic | 65.0% |
| CCCGCCAATTCGCATTCCGG+TGG | - | chr3_4:80519337-80519356 | Msa0526620:CDS | 65.0% | |
| GCGTGCGGTGGCTGATGTCT+TGG | - | chr3_4:80522769-80522788 | Msa0526620:intron | 65.0% | |
| GGGAAGACCCAGGCATGCTC+GGG | + | chr3_4:80523708-80523727 | None:intergenic | 65.0% | |
| ACGGAGACGGTCGAGGTCGC+CGG | + | chr3_4:80519050-80519069 | None:intergenic | 70.0% | |
| ! | ACGGTCGAGGTCGCCGGCGC+GGG | + | chr3_4:80519044-80519063 | None:intergenic | 80.0% |
| ! | GACGGTCGAGGTCGCCGGCG+CGG | + | chr3_4:80519045-80519064 | None:intergenic | 80.0% |
| ! | GGTCGCCGGCGCGGGAGGCT+TGG | + | chr3_4:80519036-80519055 | None:intergenic | 85.0% |
| ! | GTCGAGGTCGCCGGCGCGGG+AGG | + | chr3_4:80519041-80519060 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 80518890 | 80524167 | 80518890 | ID=Msa0526620;Name=Msa0526620 |
| chr3_4 | mRNA | 80518890 | 80524167 | 80518890 | ID=Msa0526620-mRNA-1;Parent=Msa0526620;Name=Msa0526620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|1|1|1|1|1|5|174|597 |
| chr3_4 | exon | 80518890 | 80519493 | 80518890 | ID=Msa0526620-mRNA-1:exon:24209;Parent=Msa0526620-mRNA-1 |
| chr3_4 | exon | 80520205 | 80520338 | 80520205 | ID=Msa0526620-mRNA-1:exon:24208;Parent=Msa0526620-mRNA-1 |
| chr3_4 | exon | 80520419 | 80520455 | 80520419 | ID=Msa0526620-mRNA-1:exon:24207;Parent=Msa0526620-mRNA-1 |
| chr3_4 | exon | 80521002 | 80521761 | 80521002 | ID=Msa0526620-mRNA-1:exon:24206;Parent=Msa0526620-mRNA-1 |
| chr3_4 | exon | 80523684 | 80524167 | 80523684 | ID=Msa0526620-mRNA-1:exon:24205;Parent=Msa0526620-mRNA-1 |
| chr3_4 | five_prime_UTR | 80524117 | 80524167 | 80524117 | ID=Msa0526620-mRNA-1:five_prime_utr;Parent=Msa0526620-mRNA-1 |
| chr3_4 | CDS | 80523684 | 80524116 | 80523684 | ID=Msa0526620-mRNA-1:cds;Parent=Msa0526620-mRNA-1 |
| chr3_4 | CDS | 80521002 | 80521761 | 80521002 | ID=Msa0526620-mRNA-1:cds;Parent=Msa0526620-mRNA-1 |
| chr3_4 | CDS | 80520419 | 80520455 | 80520419 | ID=Msa0526620-mRNA-1:cds;Parent=Msa0526620-mRNA-1 |
| chr3_4 | CDS | 80520205 | 80520338 | 80520205 | ID=Msa0526620-mRNA-1:cds;Parent=Msa0526620-mRNA-1 |
| chr3_4 | CDS | 80519064 | 80519493 | 80519064 | ID=Msa0526620-mRNA-1:cds;Parent=Msa0526620-mRNA-1 |
| chr3_4 | three_prime_UTR | 80518890 | 80519063 | 80518890 | ID=Msa0526620-mRNA-1:three_prime_utr;Parent=Msa0526620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
