Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229850 | XP_013461190.1 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229850 | sp|Q9SJ85|Y2474_ARATH | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229850 | A0A072UZJ2 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0229850 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047810 | Msa0229850 | 0.854771 | 9.859702e-62 | -8.615850e-47 |
| Msa0229850 | Msa0513450 | 0.906837 | 9.682033e-81 | -8.615850e-47 |
| Msa0229850 | Msa0526620 | 0.845251 | 4.564443e-59 | -8.615850e-47 |
| Msa0229850 | Msa1101530 | 0.888622 | 5.012442e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229850 | MtrunA17_Chr3g0120891 | 97.956 | 587 | 6 | 1 | 1 | 587 | 1 | 581 | 0.0 | 1183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229850 | AT2G04740.1 | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| Msa0229850 | AT2G04740.4 | 71.144 | 402 | 103 | 3 | 16 | 412 | 26 | 419 | 0.0 | 587 |
| Msa0229850 | AT2G04740.3 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
| Msa0229850 | AT2G04740.2 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
Find 136 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCTTGATCATTATTT+AGG | 0.129432 | 2_2:-1658483 | None:intergenic |
| ATAATTCATCTTTCCCTTCA+TGG | 0.209480 | 2_2:-1656717 | None:intergenic |
| TTGATGATTTACGTGATAAA+TGG | 0.228719 | 2_2:+1658509 | Msa0229850:CDS |
| TCGATGCTAGAATAACTTTA+TGG | 0.240325 | 2_2:-1656651 | None:intergenic |
| CCAATCACCGCTGTAATTTC+AGG | 0.266996 | 2_2:+1658688 | Msa0229850:CDS |
| GACTTAGACCCTTCCGATTT+CGG | 0.267048 | 2_2:+1653742 | Msa0229850:CDS |
| GGCAAATAATTCAAAATTAC+AGG | 0.300060 | 2_2:-1658365 | None:intergenic |
| TCCGGTGGATTTCAGTTTCC+TGG | 0.303043 | 2_2:+1654126 | Msa0229850:CDS |
| CTTCAGGTGATGCCATTTCT+AGG | 0.304251 | 2_2:-1657556 | None:intergenic |
| TATGAGAATGGTCAAGATAA+TGG | 0.315888 | 2_2:+1656526 | Msa0229850:CDS |
| TTGCCGATACAAAAGAATTC+CGG | 0.318461 | 2_2:+1658383 | Msa0229850:CDS |
| ACAACTGTCCCGAGCATGCC+TGG | 0.328006 | 2_2:+1658454 | Msa0229850:CDS |
| AACCAATGGCAAAGCTCTTC+AGG | 0.332097 | 2_2:-1657572 | None:intergenic |
| GGCGAACAAACTGTAATTTC+AGG | 0.337080 | 2_2:+1658709 | Msa0229850:CDS |
| TGCTCCGAACACACGTTTGA+CGG | 0.338738 | 2_2:+1653967 | Msa0229850:CDS |
| TAGAGAGCAGATGCTAAGTT+AGG | 0.345187 | 2_2:+1658809 | Msa0229850:three_prime_UTR |
| CTTGGAAAACGTCGCCGTTT+GGG | 0.353575 | 2_2:-1653789 | None:intergenic |
| TTACTCTGCTCTTAATTTGA+AGG | 0.354172 | 2_2:+1654002 | Msa0229850:CDS |
| CTGAATAAAAGAAATGTATA+AGG | 0.355396 | 2_2:-1656255 | None:intergenic |
| TATGACCCTGTGAGCTTCAA+TGG | 0.355838 | 2_2:-1656125 | None:intergenic |
| ACATCAGCAAGATCATTTAG+AGG | 0.359931 | 2_2:-1656595 | None:intergenic |
| ATTTCCTTGATCATTATTTA+GGG | 0.362505 | 2_2:-1658482 | None:intergenic |
| GCAGGAAGCCTGTCTTCTTC+AGG | 0.365112 | 2_2:-1656460 | None:intergenic |
| TGTCCCGCCAATTCGCATTC+CGG | 0.366372 | 2_2:+1654108 | Msa0229850:CDS |
| CTGCTCTTAATTTGAAGGTT+AGG | 0.367208 | 2_2:+1654007 | Msa0229850:CDS |
| TGCCGATACAAAAGAATTCC+GGG | 0.375788 | 2_2:+1658384 | Msa0229850:CDS |
| CCTGAAATTACAGCGGTGAT+TGG | 0.383019 | 2_2:-1658688 | None:intergenic |
| GCTTGGAAAACGTCGCCGTT+TGG | 0.392528 | 2_2:-1653790 | None:intergenic |
| AGATAATGGAATTGATGAAT+TGG | 0.393017 | 2_2:+1656540 | Msa0229850:CDS |
| CAGGTACACCGATCGTTTGC+AGG | 0.393496 | 2_2:+1657356 | Msa0229850:intron |
| AGAGATTGCTGTGGATGATA+TGG | 0.401698 | 2_2:+1656285 | Msa0229850:CDS |
| TCAAATTCCACTTATGAGAA+TGG | 0.404180 | 2_2:+1656514 | Msa0229850:CDS |
| ACGGTCGAGGTCGCCGGCGC+GGG | 0.409392 | 2_2:-1653815 | None:intergenic |
| ATCTTGACCATTCTCATAAG+TGG | 0.413032 | 2_2:-1656521 | None:intergenic |
| GGTCGCCGGCGCGGGAGGCT+TGG | 0.425592 | 2_2:-1653807 | None:intergenic |
| CAAGCGCCTAGAGATGCTTA+TGG | 0.430680 | 2_2:+1658588 | Msa0229850:CDS |
| TTGACTTTACCGCCACCATC+TGG | 0.432801 | 2_2:+1658415 | Msa0229850:CDS |
| TCAGCCACCGCACGCTTAAG+AGG | 0.432979 | 2_2:-1657518 | None:intergenic |
| GCAGGAAATAAATCCAGATC+AGG | 0.444091 | 2_2:+1657374 | Msa0229850:CDS |
| TTGCTTGGAGTGCTTAAGTT+GGG | 0.445475 | 2_2:+1658832 | Msa0229850:three_prime_UTR |
| GGGGACTGATGTGCCGAAAT+CGG | 0.446957 | 2_2:-1653755 | None:intergenic |
| CTCTACTACGCTTGTCTCGC+CGG | 0.450922 | 2_2:+1653901 | Msa0229850:CDS |
| AAATCCACCGGAATGCGAAT+TGG | 0.454070 | 2_2:-1654115 | None:intergenic |
| CGTCAACGCACGTGACCAAT+GGG | 0.454729 | 2_2:+1653867 | Msa0229850:CDS |
| ACGTCAACGCACGTGACCAA+TGG | 0.460070 | 2_2:+1653866 | Msa0229850:CDS |
| CTCATAAGTGGAATTTGAAA+GGG | 0.462115 | 2_2:-1656509 | None:intergenic |
| AGGGAAGACCCAGGCATGCT+CGG | 0.478303 | 2_2:-1658463 | None:intergenic |
| GTTGCTTGGAGTGCTTAAGT+TGG | 0.479363 | 2_2:+1658831 | Msa0229850:three_prime_UTR |
| CTTGGTGCCACACCTAGAAA+TGG | 0.481090 | 2_2:+1657544 | Msa0229850:CDS |
| GTCACCGTCAAACGTGTGTT+CGG | 0.482387 | 2_2:-1653971 | None:intergenic |
| AGATGCTAAGTTAGGTTGCT+TGG | 0.482412 | 2_2:+1658817 | Msa0229850:three_prime_UTR |
| ACGGAGACGGTCGAGGTCGC+CGG | 0.484646 | 2_2:-1653821 | None:intergenic |
| CGTTAACGCCGCATTCAAGA+AGG | 0.487687 | 2_2:-1653846 | None:intergenic |
| AGCAAGACTCTCACGTATGA+AGG | 0.487920 | 2_2:+1656690 | Msa0229850:CDS |
| TCTCATAAGTGGAATTTGAA+AGG | 0.493040 | 2_2:-1656510 | None:intergenic |
| GAATTGATGAATTGGTATCT+AGG | 0.495038 | 2_2:+1656548 | Msa0229850:CDS |
| AACACACGTTTGACGGTGAC+CGG | 0.496734 | 2_2:+1653974 | Msa0229850:CDS |
| GCAGAGCATGAAAAGTCATC+AGG | 0.503518 | 2_2:+1658616 | Msa0229850:CDS |
| GCGTGCGGTGGCTGATGTCT+TGG | 0.504420 | 2_2:+1657526 | Msa0229850:CDS |
| AGGATTCTACGCAAGGCTGC+AGG | 0.504870 | 2_2:-1656478 | None:intergenic |
| TCTTCCCTAAATAATGATCA+AGG | 0.508410 | 2_2:+1658478 | Msa0229850:CDS |
| GCTCGTATGCTTCTCGAAAA+CGG | 0.515902 | 2_2:+1653937 | Msa0229850:CDS |
| CCCGCCAATTCGCATTCCGG+TGG | 0.516474 | 2_2:+1654111 | Msa0229850:CDS |
| GGGAAGACCCAGGCATGCTC+GGG | 0.516596 | 2_2:-1658462 | None:intergenic |
| CAACTGTCCCGAGCATGCCT+GGG | 0.516727 | 2_2:+1658455 | Msa0229850:CDS |
| CGTATGAAGGATTTCCATGA+AGG | 0.522102 | 2_2:+1656703 | Msa0229850:CDS |
| ATGACCCTGTGAGCTTCAAT+GGG | 0.523451 | 2_2:-1656124 | None:intergenic |
| TAATTCAAAATTACAGGCAA+TGG | 0.524676 | 2_2:-1658359 | None:intergenic |
| TGATGAATTGGTATCTAGGA+TGG | 0.526622 | 2_2:+1656552 | Msa0229850:CDS |
| GTCGAGGTCGCCGGCGCGGG+AGG | 0.526895 | 2_2:-1653812 | None:intergenic |
| CTAGAATAACTTTATGGCAG+CGG | 0.541146 | 2_2:-1656645 | None:intergenic |
| CAACAACCATAAGCATCTCT+AGG | 0.542190 | 2_2:-1658594 | None:intergenic |
| GGTGATGCCATTTCTAGGTG+TGG | 0.543342 | 2_2:-1657551 | None:intergenic |
| GAACTCTGCAACGGATTCAA+AGG | 0.544374 | 2_2:-1654063 | None:intergenic |
| ATTTATTTCCTGCAAACGAT+CGG | 0.548048 | 2_2:-1657364 | None:intergenic |
| TCCACCGGAATGCGAATTGG+CGG | 0.548080 | 2_2:-1654112 | None:intergenic |
| CACCTGAAGAGCTTTGCCAT+TGG | 0.550101 | 2_2:+1657570 | Msa0229850:CDS |
| CCACCGGAATGCGAATTGGC+GGG | 0.551808 | 2_2:-1654111 | None:intergenic |
| GAAGGTAACGGAGACGGTCG+AGG | 0.554738 | 2_2:-1653828 | None:intergenic |
| TGTATAAGGCTACAAAGTGC+AGG | 0.556046 | 2_2:-1656241 | None:intergenic |
| GAAGACCCATTGAAGCTCAC+AGG | 0.556477 | 2_2:+1656119 | Msa0229850:CDS |
| ATAGGTATTTCATCCACTCA+AGG | 0.558796 | 2_2:+1656049 | Msa0229850:intron |
| TGCGCATAATCTTAACAAGA+AGG | 0.558852 | 2_2:+1653692 | Msa0229850:five_prime_UTR |
| AGAGAGCGGTGGAGTCCCAT+TGG | 0.560808 | 2_2:-1653882 | None:intergenic |
| TATCCCTTCCTGAAGAAGAC+AGG | 0.561398 | 2_2:+1656452 | Msa0229850:CDS |
| ACTGATGTGCCGAAATCGGA+AGG | 0.562037 | 2_2:-1653751 | None:intergenic |
| ACGAGCGGCATCGAGGTGAC+CGG | 0.567999 | 2_2:-1653920 | None:intergenic |
| CATCTGCTCTCTATAAACTA+CGG | 0.577759 | 2_2:-1658799 | None:intergenic |
| CGGTGAAGTAAGATTTGCAC+GGG | 0.578959 | 2_2:+1656204 | Msa0229850:CDS |
| GACGGTCGAGGTCGCCGGCG+CGG | 0.580861 | 2_2:-1653816 | None:intergenic |
| GTAAAGTCAACAGCATTGCC+CGG | 0.581664 | 2_2:-1658402 | None:intergenic |
| CTATCTATATTATTATTACA+CGG | 0.582185 | 2_2:+1658900 | Msa0229850:three_prime_UTR |
| TAGGATGGATGCCATGCAGA+TGG | 0.591367 | 2_2:+1656567 | Msa0229850:CDS |
| TAGGTATTTCATCCACTCAA+GGG | 0.593239 | 2_2:+1656050 | Msa0229850:intron |
| AATTTGAAAGGGCAGTCAGA+AGG | 0.595225 | 2_2:-1656498 | None:intergenic |
| ACCAGGAAACTGAAATCCAC+CGG | 0.595513 | 2_2:-1654127 | None:intergenic |
| AAGCCTGTCTTCTTCAGGAA+GGG | 0.600256 | 2_2:-1656455 | None:intergenic |
| AGTCAGAAGGATTCTACGCA+AGG | 0.604259 | 2_2:-1656485 | None:intergenic |
| ACAGGGTCATATTAAGTGCA+AGG | 0.612478 | 2_2:+1656137 | Msa0229850:CDS |
| AAGACCCATTGAAGCTCACA+GGG | 0.615492 | 2_2:+1656120 | Msa0229850:CDS |
| GAAGCCTGTCTTCTTCAGGA+AGG | 0.615749 | 2_2:-1656456 | None:intergenic |
| ATATAGACAATTCTCAAAAG+CGG | 0.616785 | 2_2:+1656413 | Msa0229850:CDS |
| CTCCGTTACCTTCTTGAATG+CGG | 0.621540 | 2_2:+1653838 | Msa0229850:CDS |
| CGAAGAGATGAGTCTCCAGA+TGG | 0.622590 | 2_2:-1658430 | None:intergenic |
| TAGAGGTTTAGCCATCTGCA+TGG | 0.622841 | 2_2:-1656578 | None:intergenic |
| ATCTCTCTCGTCAAGCTCAG+CGG | 0.623099 | 2_2:-1658545 | None:intergenic |
| CGTGTTCTTCAAGACAAGGA+AGG | 0.623560 | 2_2:-1656750 | None:intergenic |
| ATTCAAGAAGGTAACGGAGA+CGG | 0.624043 | 2_2:-1653834 | None:intergenic |
| GATGTTTCCTCTTAAGCGTG+CGG | 0.625855 | 2_2:+1657511 | Msa0229850:CDS |
| GTTTCCTCTTAAGCGTGCGG+TGG | 0.625968 | 2_2:+1657514 | Msa0229850:CDS |
| TGCAACGGATTCAAAGGAGG+AGG | 0.631815 | 2_2:-1654057 | None:intergenic |
| CTCTGCAACGGATTCAAAGG+AGG | 0.633098 | 2_2:-1654060 | None:intergenic |
| AGAGATGAGTCTCCAGATGG+TGG | 0.634349 | 2_2:-1658427 | None:intergenic |
| ACAAGCGTAGTAGAGAGCGG+TGG | 0.635729 | 2_2:-1653893 | None:intergenic |
| GTATGAAGGATTTCCATGAA+GGG | 0.635765 | 2_2:+1656704 | Msa0229850:CDS |
| TGAAGAACACGACATGAGTG+TGG | 0.636750 | 2_2:+1656762 | Msa0229850:CDS |
| GATGAGTCTCCAGATGGTGG+CGG | 0.638331 | 2_2:-1658424 | None:intergenic |
| GTGATTGGAGAGAAAGTCAA+GGG | 0.639852 | 2_2:-1658673 | None:intergenic |
| TCATTATTTAGGGAAGACCC+AGG | 0.639945 | 2_2:-1658472 | None:intergenic |
| CGCCGCATTCAAGAAGGTAA+CGG | 0.641866 | 2_2:-1653840 | None:intergenic |
| GTTGGAACTGAACCCTTGAG+TGG | 0.645789 | 2_2:-1656062 | None:intergenic |
| GAGACTGATTGGAAAGAGCG+CGG | 0.646559 | 2_2:+1656184 | Msa0229850:CDS |
| AGACAGATTAGAGATTGCTG+TGG | 0.649010 | 2_2:+1656276 | Msa0229850:CDS |
| GGTGATTGGAGAGAAAGTCA+AGG | 0.656518 | 2_2:-1658674 | None:intergenic |
| ATGTCGTGTTCTTCAAGACA+AGG | 0.664235 | 2_2:-1656754 | None:intergenic |
| CTGATGTGCCGAAATCGGAA+GGG | 0.674283 | 2_2:-1653750 | None:intergenic |
| TCACGAAGAGAACTCTGCAA+CGG | 0.676952 | 2_2:-1654072 | None:intergenic |
| TGTCTGCTAGCATTAACCAA+TGG | 0.682080 | 2_2:-1657586 | None:intergenic |
| ATGAGTTTCATCGACGACGG+CGG | 0.684567 | 2_2:+1653715 | Msa0229850:CDS |
| AGGATGAGTTTCATCGACGA+CGG | 0.689914 | 2_2:+1653712 | Msa0229850:exon |
| GCGGTGAAGTAAGATTTGCA+CGG | 0.696641 | 2_2:+1656203 | Msa0229850:CDS |
| GAGACAAGCGTAGTAGAGAG+CGG | 0.707889 | 2_2:-1653896 | None:intergenic |
| TTGTTCGCCTGAAATTACAG+CGG | 0.710853 | 2_2:-1658695 | None:intergenic |
| TAAGAGCAGAGTAATGACAC+CGG | 0.716123 | 2_2:-1653993 | None:intergenic |
| GAAGCATACGAGCGGCATCG+AGG | 0.723315 | 2_2:-1653927 | None:intergenic |
| ATAAAGTTATTCTAGCATCG+AGG | 0.746606 | 2_2:+1656653 | Msa0229850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTTGATTT+AGG | + | chr2_2:1654228-1654247 | Msa0229850:intron | 10.0% |
| !! | ATTATTAAAAGATATTTGAT+AGG | + | chr2_2:1655037-1655056 | Msa0229850:intron | 10.0% |
| !!! | TTTATTTTATTATAGTATTC+AGG | - | chr2_2:1655230-1655249 | None:intergenic | 10.0% |
| !! | ATAAATACAACATTATTATT+TGG | - | chr2_2:1655995-1656014 | None:intergenic | 10.0% |
| !!! | AATTTTGAAATTGAAAATAT+CGG | + | chr2_2:1656837-1656856 | Msa0229850:intron | 10.0% |
| !! | GTATTATTATTCTATAAATT+TGG | + | chr2_2:1656927-1656946 | Msa0229850:intron | 10.0% |
| !!! | TTTCAAAATATTTTTTAAAC+AGG | + | chr2_2:1657454-1657473 | Msa0229850:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+AGG | + | chr2_2:1657922-1657941 | Msa0229850:intron | 10.0% |
| !! | ATATTATTCATAGATGATTA+TGG | + | chr2_2:1654387-1654406 | Msa0229850:intron | 15.0% |
| !! | TTCTCAATGATAAATTAAAT+AGG | + | chr2_2:1654491-1654510 | Msa0229850:intron | 15.0% |
| !! | TCTCAATGATAAATTAAATA+GGG | + | chr2_2:1654492-1654511 | Msa0229850:intron | 15.0% |
| !! | AAAGTTCAATACTATAATAA+GGG | - | chr2_2:1655738-1655757 | None:intergenic | 15.0% |
| !! | AAAAGTTCAATACTATAATA+AGG | - | chr2_2:1655739-1655758 | None:intergenic | 15.0% |
| !! | AATAATGTTGTATTTATACA+TGG | + | chr2_2:1655998-1656017 | Msa0229850:intron | 15.0% |
| !! | AAATCATTTAACTATAAATC+AGG | - | chr2_2:1656958-1656977 | None:intergenic | 15.0% |
| !!! | ACTTTTAAAAGAAATCTTAA+TGG | - | chr2_2:1657411-1657430 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTCTTTTAAAAG+TGG | + | chr2_2:1657410-1657429 | Msa0229850:intron | 15.0% |
| !!! | AAATATTTCAATTTTGGTTT+AGG | - | chr2_2:1657861-1657880 | None:intergenic | 15.0% |
| !!! | ATTGGTAAATATTTCAATTT+TGG | - | chr2_2:1657867-1657886 | None:intergenic | 15.0% |
| !! | GACAAATAATTGTTTGTAAA+GGG | + | chr2_2:1654580-1654599 | Msa0229850:intron | 20.0% |
| !! | TTAAACTATGAAAAACTAGT+AGG | - | chr2_2:1655069-1655088 | None:intergenic | 20.0% |
| !!! | TATTATAGTATTCAGGTTTT+TGG | - | chr2_2:1655223-1655242 | None:intergenic | 20.0% |
| !!! | TTTGTTTTATTTCTCCTAAA+AGG | + | chr2_2:1655331-1655350 | Msa0229850:intron | 20.0% |
| !!! | TTGTTTTATTTCTCCTAAAA+GGG | + | chr2_2:1655332-1655351 | Msa0229850:intron | 20.0% |
| !! | AGAGAATTTAGATATATTGT+CGG | - | chr2_2:1655618-1655637 | None:intergenic | 20.0% |
| !!! | TCAAACTTTTTCTTGAAAAA+TGG | - | chr2_2:1656166-1656185 | None:intergenic | 20.0% |
| !! | CTGAATAAAAGAAATGTATA+AGG | - | chr2_2:1656258-1656277 | None:intergenic | 20.0% |
| !! | ATAGAATAATAATACAGTCA+CGG | - | chr2_2:1656922-1656941 | None:intergenic | 20.0% |
| !! | ACTTAAAATCTTTAGCAAAT+TGG | - | chr2_2:1657085-1657104 | None:intergenic | 20.0% |
| !! | TTATTCAATCTTTAGCAAAT+TGG | - | chr2_2:1657123-1657142 | None:intergenic | 20.0% |
| !! | TTTGAAAATCAGACAATAAA+AGG | - | chr2_2:1657441-1657460 | None:intergenic | 20.0% |
| !! | TAAAATAAGTGGAAATGAAA+AGG | - | chr2_2:1657721-1657740 | None:intergenic | 20.0% |
| !!! | TACTTATTAAAGGTTTTATC+TGG | + | chr2_2:1657797-1657816 | Msa0229850:intron | 20.0% |
| !! | ATTTCCTTGATCATTATTTA+GGG | - | chr2_2:1658485-1658504 | None:intergenic | 20.0% |
| !! | AAGAATTTGATTCTACCTTT+TGG | + | chr2_2:1654150-1654169 | Msa0229850:intron | 25.0% |
| !! | ATTCTACCTTTTGGATTAAT+TGG | + | chr2_2:1654159-1654178 | Msa0229850:intron | 25.0% |
| ! | CATAAACCAATTAATCCAAA+AGG | - | chr2_2:1654168-1654187 | None:intergenic | 25.0% |
| !! | ATTGGTTTATGAGAATGTTA+AGG | + | chr2_2:1654177-1654196 | Msa0229850:intron | 25.0% |
| !! | AATGCACATTTTCATAACTT+AGG | - | chr2_2:1654358-1654377 | None:intergenic | 25.0% |
| ! | TTATTCATAGATGATTATGG+AGG | + | chr2_2:1654390-1654409 | Msa0229850:intron | 25.0% |
| !! | TTAGAAGCTCACTTTAATTT+AGG | + | chr2_2:1654448-1654467 | Msa0229850:intron | 25.0% |
| ! | CAATGATAAATTAAATAGGG+AGG | + | chr2_2:1654495-1654514 | Msa0229850:intron | 25.0% |
| !! | TAAATAGGGAGGATTTTATA+AGG | + | chr2_2:1654506-1654525 | Msa0229850:intron | 25.0% |
| ! | AAAGGAAATCATTAATGCAT+GGG | + | chr2_2:1654529-1654548 | Msa0229850:intron | 25.0% |
| !! | TGTAAAGGGTCTTATATTTA+CGG | + | chr2_2:1654558-1654577 | Msa0229850:intron | 25.0% |
| ! | GGACAAATAATTGTTTGTAA+AGG | + | chr2_2:1654579-1654598 | Msa0229850:intron | 25.0% |
| ! | GAGAATTTAGATATATTGTC+GGG | - | chr2_2:1655617-1655636 | None:intergenic | 25.0% |
| ! | TCTAATATTCTTACACAACA+AGG | + | chr2_2:1655814-1655833 | Msa0229850:intron | 25.0% |
| ! | AACCATCAAATGATAAAACA+AGG | + | chr2_2:1655857-1655876 | Msa0229850:intron | 25.0% |
| ! | ATATAGACAATTCTCAAAAG+CGG | + | chr2_2:1656413-1656432 | Msa0229850:CDS | 25.0% |
| !!! | AGATAATGGAATTGATGAAT+TGG | + | chr2_2:1656540-1656559 | Msa0229850:CDS | 25.0% |
| !! | TTTGAAATTGAAAATATCGG+AGG | + | chr2_2:1656840-1656859 | Msa0229850:intron | 25.0% |
| ! | TTGAAATTGAAAATATCGGA+GGG | + | chr2_2:1656841-1656860 | Msa0229850:intron | 25.0% |
| ! | TAGAATAATAATACAGTCAC+GGG | - | chr2_2:1656921-1656940 | None:intergenic | 25.0% |
| !! | TTACATAAGATGATTTGCAA+TGG | + | chr2_2:1656997-1657016 | Msa0229850:intron | 25.0% |
| ! | CAGATTGAAAAACAAAAACT+AGG | - | chr2_2:1657035-1657054 | None:intergenic | 25.0% |
| !!! | CTAGTTTTTGTTTTTCAATC+TGG | + | chr2_2:1657033-1657052 | Msa0229850:intron | 25.0% |
| ! | AACAAACATGCATAAAACTA+AGG | - | chr2_2:1657167-1657186 | None:intergenic | 25.0% |
| ! | TTTATCCTGTATTTCTTTGT+TGG | + | chr2_2:1657331-1657350 | Msa0229850:intron | 25.0% |
| !!! | AATATTTTTTAAACAGGCTG+AGG | + | chr2_2:1657460-1657479 | Msa0229850:intron | 25.0% |
| ! | ACCTTTAATAAGTAACTACT+GGG | - | chr2_2:1657791-1657810 | None:intergenic | 25.0% |
| ! | AACCTTTAATAAGTAACTAC+TGG | - | chr2_2:1657792-1657811 | None:intergenic | 25.0% |
| !!! | TATTAAAGGTTTTATCTGGA+TGG | + | chr2_2:1657801-1657820 | Msa0229850:intron | 25.0% |
| ! | CCTTAATATACTTCTAACAA+TGG | - | chr2_2:1658229-1658248 | None:intergenic | 25.0% |
| !! | CCATTGTTAGAAGTATATTA+AGG | + | chr2_2:1658226-1658245 | Msa0229850:intron | 25.0% |
| ! | AGATTAAACAAGATATGATC+TGG | - | chr2_2:1658270-1658289 | None:intergenic | 25.0% |
| ! | TAATTCAAAATTACAGGCAA+TGG | - | chr2_2:1658362-1658381 | None:intergenic | 25.0% |
| ! | GGCAAATAATTCAAAATTAC+AGG | - | chr2_2:1658368-1658387 | None:intergenic | 25.0% |
| ! | GATTTCCTTGATCATTATTT+AGG | - | chr2_2:1658486-1658505 | None:intergenic | 25.0% |
| !! | TTGATGATTTACGTGATAAA+TGG | + | chr2_2:1658509-1658528 | Msa0229850:CDS | 25.0% |
| !!! | AAAAAGTGTTCAGAAATCTA+CGG | - | chr2_2:1658748-1658767 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAACACTTTTT+TGG | + | chr2_2:1658748-1658767 | Msa0229850:exon | 25.0% |
| ! | TTACTCTGCTCTTAATTTGA+AGG | + | chr2_2:1654002-1654021 | Msa0229850:CDS | 30.0% |
| TTTATGAGAATGTTAAGGTG+TGG | + | chr2_2:1654182-1654201 | Msa0229850:intron | 30.0% | |
| !! | GTGGAAGCTTTTTCTAATTA+AGG | + | chr2_2:1654201-1654220 | Msa0229850:intron | 30.0% |
| GAAAGGAAATCATTAATGCA+TGG | + | chr2_2:1654528-1654547 | Msa0229850:intron | 30.0% | |
| ! | TTGTAAAGGGTCTTATGATT+AGG | + | chr2_2:1654593-1654612 | Msa0229850:intron | 30.0% |
| ! | TGTAAAGGGTCTTATGATTA+GGG | + | chr2_2:1654594-1654613 | Msa0229850:intron | 30.0% |
| TGAGAATTGAAATGACTGAT+TGG | + | chr2_2:1654689-1654708 | Msa0229850:intron | 30.0% | |
| ! | CATAAGTTTAGCTTCATAGT+TGG | + | chr2_2:1654875-1654894 | Msa0229850:intron | 30.0% |
| AAAAACCCACCAAAACAATA+TGG | + | chr2_2:1655148-1655167 | Msa0229850:intron | 30.0% | |
| AGCATTAGATATCTGATATC+AGG | - | chr2_2:1655578-1655597 | None:intergenic | 30.0% | |
| CATAAAACAATGAATCGAGT+AGG | + | chr2_2:1655784-1655803 | Msa0229850:intron | 30.0% | |
| TTCTTACACAACAAGGAATT+AGG | + | chr2_2:1655821-1655840 | Msa0229850:intron | 30.0% | |
| !!! | AGCCTTGTTTTATCATTTGA+TGG | - | chr2_2:1655862-1655881 | None:intergenic | 30.0% |
| TGTTGTATTTATACATGGTC+TGG | + | chr2_2:1656003-1656022 | Msa0229850:intron | 30.0% | |
| GTTGTATTTATACATGGTCT+GGG | + | chr2_2:1656004-1656023 | Msa0229850:intron | 30.0% | |
| ! | AGAAAAAGTTTGAGACTGAT+TGG | + | chr2_2:1656173-1656192 | Msa0229850:CDS | 30.0% |
| !!! | TCAAAAGCGGTTTATTTTAC+AGG | + | chr2_2:1656426-1656445 | Msa0229850:CDS | 30.0% |
| !!! | CAAAAGCGGTTTATTTTACA+GGG | + | chr2_2:1656427-1656446 | Msa0229850:CDS | 30.0% |
| CTCATAAGTGGAATTTGAAA+GGG | - | chr2_2:1656512-1656531 | None:intergenic | 30.0% | |
| TCTCATAAGTGGAATTTGAA+AGG | - | chr2_2:1656513-1656532 | None:intergenic | 30.0% | |
| TCAAATTCCACTTATGAGAA+TGG | + | chr2_2:1656514-1656533 | Msa0229850:CDS | 30.0% | |
| TATGAGAATGGTCAAGATAA+TGG | + | chr2_2:1656526-1656545 | Msa0229850:CDS | 30.0% | |
| GAATTGATGAATTGGTATCT+AGG | + | chr2_2:1656548-1656567 | Msa0229850:CDS | 30.0% | |
| TCGATGCTAGAATAACTTTA+TGG | - | chr2_2:1656654-1656673 | None:intergenic | 30.0% | |
| ATAAAGTTATTCTAGCATCG+AGG | + | chr2_2:1656653-1656672 | Msa0229850:CDS | 30.0% | |
| ATAATTCATCTTTCCCTTCA+TGG | - | chr2_2:1656720-1656739 | None:intergenic | 30.0% | |
| ATTTCAAAATTCCACAGTGA+AGG | - | chr2_2:1656828-1656847 | None:intergenic | 30.0% | |
| TAGTATGCCAATAATTACCA+CGG | + | chr2_2:1656867-1656886 | Msa0229850:intron | 30.0% | |
| TAAGTTACCGTGGTAATTAT+TGG | - | chr2_2:1656877-1656896 | None:intergenic | 30.0% | |
| ATGCATAAAACTAAGGCAAT+TGG | - | chr2_2:1657160-1657179 | None:intergenic | 30.0% | |
| ATAACAACACAAATATGACC+TGG | - | chr2_2:1657196-1657215 | None:intergenic | 30.0% | |
| ATTTATTTCCTGCAAACGAT+CGG | - | chr2_2:1657367-1657386 | None:intergenic | 30.0% | |
| TAAGATGAAGAAAGAGAGAT+TGG | - | chr2_2:1657629-1657648 | None:intergenic | 30.0% | |
| CTTTCTTCATCTTACATTGA+TGG | + | chr2_2:1657635-1657654 | Msa0229850:intron | 30.0% | |
| ! | ATAGGGATGTCTAAAATAAG+TGG | - | chr2_2:1657732-1657751 | None:intergenic | 30.0% |
| CTCTAGTAAGTAGTAACATA+GGG | - | chr2_2:1657749-1657768 | None:intergenic | 30.0% | |
| CCTTTAATAAGTAACTACTG+GGG | - | chr2_2:1657790-1657809 | None:intergenic | 30.0% | |
| GCATCTTAATTGTAGATCAT+TGG | - | chr2_2:1657885-1657904 | None:intergenic | 30.0% | |
| ! | TTTATGACTGCACATGTTTT+AGG | + | chr2_2:1657990-1658009 | Msa0229850:intron | 30.0% |
| TTGACTATTTGTTCATTTCC+AGG | + | chr2_2:1658299-1658318 | Msa0229850:intron | 30.0% | |
| TATTTGTTCATTTCCAGGTA+TGG | + | chr2_2:1658304-1658323 | Msa0229850:intron | 30.0% | |
| TCTTCCCTAAATAATGATCA+AGG | + | chr2_2:1658478-1658497 | Msa0229850:CDS | 30.0% | |
| TGCGCATAATCTTAACAAGA+AGG | + | chr2_2:1653692-1653711 | Msa0229850:five_prime_UTR | 35.0% | |
| !!! | CGTTTGGGACTTTTTTTAAG+GGG | - | chr2_2:1653777-1653796 | None:intergenic | 35.0% |
| !!! | CCGTTTGGGACTTTTTTTAA+GGG | - | chr2_2:1653778-1653797 | None:intergenic | 35.0% |
| CCCTTAAAAAAAGTCCCAAA+CGG | + | chr2_2:1653775-1653794 | Msa0229850:CDS | 35.0% | |
| ! | CTGCTCTTAATTTGAAGGTT+AGG | + | chr2_2:1654007-1654026 | Msa0229850:CDS | 35.0% |
| GGTAGAATCAAATTCTTACC+AGG | - | chr2_2:1654147-1654166 | None:intergenic | 35.0% | |
| ACAAAAACTGAAACTCTCGT+AGG | - | chr2_2:1654317-1654336 | None:intergenic | 35.0% | |
| ! | AGGGAGGATTTTATAAGGAA+AGG | + | chr2_2:1654511-1654530 | Msa0229850:intron | 35.0% |
| ! | ATGCATGGGACATTTTGTAA+AGG | + | chr2_2:1654543-1654562 | Msa0229850:intron | 35.0% |
| ! | TGCATGGGACATTTTGTAAA+GGG | + | chr2_2:1654544-1654563 | Msa0229850:intron | 35.0% |
| TTGAAGGAGGATACAATGAA+GGG | + | chr2_2:1654634-1654653 | Msa0229850:intron | 35.0% | |
| CAACAGTCTGTGTAACATTT+AGG | - | chr2_2:1654727-1654746 | None:intergenic | 35.0% | |
| ! | ATGTTTTCAACGACAGAATG+CGG | + | chr2_2:1655109-1655128 | Msa0229850:intron | 35.0% |
| !!! | GTCTACCATATTGTTTTGGT+GGG | - | chr2_2:1655156-1655175 | None:intergenic | 35.0% |
| CACCAAAACAATATGGTAGA+CGG | + | chr2_2:1655155-1655174 | Msa0229850:intron | 35.0% | |
| ! | ATATCGTCTCACTAGGTTTT+GGG | + | chr2_2:1655303-1655322 | Msa0229850:intron | 35.0% |
| TTGACCAACATTAGTGATCT+AGG | - | chr2_2:1655386-1655405 | None:intergenic | 35.0% | |
| TGGGAGTTTCATTCCTAATT+AGG | - | chr2_2:1655472-1655491 | None:intergenic | 35.0% | |
| GAACATCACAAGGGATAAAA+GGG | + | chr2_2:1655517-1655536 | Msa0229850:intron | 35.0% | |
| TGATATCAGGTTCCTATTTG+AGG | - | chr2_2:1655565-1655584 | None:intergenic | 35.0% | |
| ATAGGTATTTCATCCACTCA+AGG | + | chr2_2:1656049-1656068 | Msa0229850:intron | 35.0% | |
| TAGGTATTTCATCCACTCAA+GGG | + | chr2_2:1656050-1656069 | Msa0229850:intron | 35.0% | |
| TACAGTAAAAACCACATCTG+GGG | - | chr2_2:1656095-1656114 | None:intergenic | 35.0% | |
| GTACAGTAAAAACCACATCT+GGG | - | chr2_2:1656096-1656115 | None:intergenic | 35.0% | |
| TGTACAGTAAAAACCACATC+TGG | - | chr2_2:1656097-1656116 | None:intergenic | 35.0% | |
| ! | GATGTGGTTTTTACTGTACA+AGG | + | chr2_2:1656097-1656116 | Msa0229850:CDS | 35.0% |
| ATCTTGACCATTCTCATAAG+TGG | - | chr2_2:1656524-1656543 | None:intergenic | 35.0% | |
| TGATGAATTGGTATCTAGGA+TGG | + | chr2_2:1656552-1656571 | Msa0229850:CDS | 35.0% | |
| ACATCAGCAAGATCATTTAG+AGG | - | chr2_2:1656598-1656617 | None:intergenic | 35.0% | |
| CTAGAATAACTTTATGGCAG+CGG | - | chr2_2:1656648-1656667 | None:intergenic | 35.0% | |
| GTATGAAGGATTTCCATGAA+GGG | + | chr2_2:1656704-1656723 | Msa0229850:CDS | 35.0% | |
| AAGATGATCTTAAGTTACCG+TGG | - | chr2_2:1656887-1656906 | None:intergenic | 35.0% | |
| TTTAGCAAATTGGTTGCGTT+TGG | - | chr2_2:1657075-1657094 | None:intergenic | 35.0% | |
| !!! | TGCATGTTTGTTTTTGTACC+AGG | + | chr2_2:1657175-1657194 | Msa0229850:intron | 35.0% |
| TCTCATAAACTTCAAGCAGA+AGG | - | chr2_2:1657253-1657272 | None:intergenic | 35.0% | |
| CTGAACCAACAAAGAAATAC+AGG | - | chr2_2:1657339-1657358 | None:intergenic | 35.0% | |
| !! | CTGTATTTCTTTGTTGGTTC+AGG | + | chr2_2:1657337-1657356 | Msa0229850:intron | 35.0% |
| GGATGTATAAAAACCTGATC+TGG | - | chr2_2:1657390-1657409 | None:intergenic | 35.0% | |
| GCTCTAGTAAGTAGTAACAT+AGG | - | chr2_2:1657750-1657769 | None:intergenic | 35.0% | |
| CCCCAGTAGTTACTTATTAA+AGG | + | chr2_2:1657787-1657806 | Msa0229850:intron | 35.0% | |
| ATGGTTGCTGAAATGTATTC+TGG | + | chr2_2:1657820-1657839 | Msa0229850:intron | 35.0% | |
| TCTCCTTAATTCATCTACCA+CGG | + | chr2_2:1658026-1658045 | Msa0229850:intron | 35.0% | |
| AAATGACCTTAGGGTTATGT+TGG | + | chr2_2:1658053-1658072 | Msa0229850:intron | 35.0% | |
| AATCTTCAAAACACCATACC+TGG | - | chr2_2:1658320-1658339 | None:intergenic | 35.0% | |
| !!! | GGTATGGTGTTTTGAAGATT+CGG | + | chr2_2:1658320-1658339 | Msa0229850:intron | 35.0% |
| !!! | GTATGGTGTTTTGAAGATTC+GGG | + | chr2_2:1658321-1658340 | Msa0229850:CDS | 35.0% |
| TTGCCGATACAAAAGAATTC+CGG | + | chr2_2:1658383-1658402 | Msa0229850:CDS | 35.0% | |
| CATCTGCTCTCTATAAACTA+CGG | - | chr2_2:1658802-1658821 | None:intergenic | 35.0% | |
| !!! | GCCGTTTGGGACTTTTTTTA+AGG | - | chr2_2:1653779-1653798 | None:intergenic | 40.0% |
| !! | ATTCAAGAAGGTAACGGAGA+CGG | - | chr2_2:1653837-1653856 | None:intergenic | 40.0% |
| TAAGAGCAGAGTAATGACAC+CGG | - | chr2_2:1653996-1654015 | None:intergenic | 40.0% | |
| GAGAGAGCTTATGAGAAAGT+TGG | + | chr2_2:1654421-1654440 | Msa0229850:intron | 40.0% | |
| ! | AAGGGTCTTATGATTAGGGA+TGG | + | chr2_2:1654598-1654617 | Msa0229850:intron | 40.0% |
| GTCTTATGATTAGGGATGGA+GGG | + | chr2_2:1654602-1654621 | Msa0229850:intron | 40.0% | |
| GTTGAAGGAGGATACAATGA+AGG | + | chr2_2:1654633-1654652 | Msa0229850:intron | 40.0% | |
| ATGTTACACAGACTGTTGCT+AGG | + | chr2_2:1654729-1654748 | Msa0229850:intron | 40.0% | |
| TGTTACACAGACTGTTGCTA+GGG | + | chr2_2:1654730-1654749 | Msa0229850:intron | 40.0% | |
| GTTGTGTTAATGTGTCGTGT+CGG | - | chr2_2:1654787-1654806 | None:intergenic | 40.0% | |
| !! | CGCTGCTGTAGTTTTTGAAA+TGG | - | chr2_2:1654851-1654870 | None:intergenic | 40.0% |
| TTCAAAAACTACAGCAGCGT+CGG | + | chr2_2:1654852-1654871 | Msa0229850:intron | 40.0% | |
| GTACTGTTTGTGCAATGGTA+AGG | + | chr2_2:1654965-1654984 | Msa0229850:intron | 40.0% | |
| !!! | CGTCTACCATATTGTTTTGG+TGG | - | chr2_2:1655157-1655176 | None:intergenic | 40.0% |
| ! | TGCCGTCTACCATATTGTTT+TGG | - | chr2_2:1655160-1655179 | None:intergenic | 40.0% |
| ! | GCAGTCTATGATGAAAGCAT+TGG | + | chr2_2:1655182-1655201 | Msa0229850:intron | 40.0% |
| TAACAAATCGAAGTTGCACC+AGG | + | chr2_2:1655277-1655296 | Msa0229850:intron | 40.0% | |
| ! | CATATCGTCTCACTAGGTTT+TGG | + | chr2_2:1655302-1655321 | Msa0229850:intron | 40.0% |
| ! | GCAATGAAGCAAACCCTTTT+AGG | - | chr2_2:1655348-1655367 | None:intergenic | 40.0% |
| ! | GGTTTGCTTCATTGCTTAAG+TGG | + | chr2_2:1655353-1655372 | Msa0229850:intron | 40.0% |
| TTGCTTCATTGCTTAAGTGG+AGG | + | chr2_2:1655356-1655375 | Msa0229850:intron | 40.0% | |
| CTCTCCTAGATCACTAATGT+TGG | + | chr2_2:1655379-1655398 | Msa0229850:intron | 40.0% | |
| AATTAGGCACCAGCCATATT+TGG | - | chr2_2:1655456-1655475 | None:intergenic | 40.0% | |
| AATATGGCTGGTGCCTAATT+AGG | + | chr2_2:1655456-1655475 | Msa0229850:intron | 40.0% | |
| AGGAATGAAACTCCCAGAAA+AGG | + | chr2_2:1655476-1655495 | Msa0229850:intron | 40.0% | |
| TGAAACTCCCAGAAAAGGAA+AGG | + | chr2_2:1655481-1655500 | Msa0229850:intron | 40.0% | |
| TCCCAGAAAAGGAAAGGATA+TGG | + | chr2_2:1655487-1655506 | Msa0229850:intron | 40.0% | |
| ! | CCCATATCCTTTCCTTTTCT+GGG | - | chr2_2:1655491-1655510 | None:intergenic | 40.0% |
| CCCAGAAAAGGAAAGGATAT+GGG | + | chr2_2:1655488-1655507 | Msa0229850:intron | 40.0% | |
| ! | ACCCATATCCTTTCCTTTTC+TGG | - | chr2_2:1655492-1655511 | None:intergenic | 40.0% |
| AAGGAAAGGATATGGGTATG+AGG | + | chr2_2:1655495-1655514 | Msa0229850:intron | 40.0% | |
| GGAACATCACAAGGGATAAA+AGG | + | chr2_2:1655516-1655535 | Msa0229850:intron | 40.0% | |
| ! | AAGGGATAAAAGGGTTTGCT+TGG | + | chr2_2:1655526-1655545 | Msa0229850:intron | 40.0% |
| ! | AGGGATAAAAGGGTTTGCTT+GGG | + | chr2_2:1655527-1655546 | Msa0229850:intron | 40.0% |
| TATCAGGTTCCTATTTGAGG+TGG | - | chr2_2:1655562-1655581 | None:intergenic | 40.0% | |
| ACAGTAAAAACCACATCTGG+GGG | - | chr2_2:1656094-1656113 | None:intergenic | 40.0% | |
| ACAGGGTCATATTAAGTGCA+AGG | + | chr2_2:1656137-1656156 | Msa0229850:CDS | 40.0% | |
| TGTATAAGGCTACAAAGTGC+AGG | - | chr2_2:1656244-1656263 | None:intergenic | 40.0% | |
| AGACAGATTAGAGATTGCTG+TGG | + | chr2_2:1656276-1656295 | Msa0229850:CDS | 40.0% | |
| AGAGATTGCTGTGGATGATA+TGG | + | chr2_2:1656285-1656304 | Msa0229850:CDS | 40.0% | |
| AATTTGAAAGGGCAGTCAGA+AGG | - | chr2_2:1656501-1656520 | None:intergenic | 40.0% | |
| CGTATGAAGGATTTCCATGA+AGG | + | chr2_2:1656703-1656722 | Msa0229850:CDS | 40.0% | |
| ATGTCGTGTTCTTCAAGACA+AGG | - | chr2_2:1656757-1656776 | None:intergenic | 40.0% | |
| TAAGTCTCTTTCCTTCACTG+TGG | + | chr2_2:1656814-1656833 | Msa0229850:intron | 40.0% | |
| GCAGGAAATAAATCCAGATC+AGG | + | chr2_2:1657374-1657393 | Msa0229850:CDS | 40.0% | |
| TGTCTGCTAGCATTAACCAA+TGG | - | chr2_2:1657589-1657608 | None:intergenic | 40.0% | |
| CATATGTAATTCACCACGAC+AGG | - | chr2_2:1658145-1658164 | None:intergenic | 40.0% | |
| TGCCGATACAAAAGAATTCC+GGG | + | chr2_2:1658384-1658403 | Msa0229850:CDS | 40.0% | |
| ! | TGCCCGGAATTCTTTTGTAT+CGG | - | chr2_2:1658389-1658408 | None:intergenic | 40.0% |
| TCATTATTTAGGGAAGACCC+AGG | - | chr2_2:1658475-1658494 | None:intergenic | 40.0% | |
| CAACAACCATAAGCATCTCT+AGG | - | chr2_2:1658597-1658616 | None:intergenic | 40.0% | |
| GTGATTGGAGAGAAAGTCAA+GGG | - | chr2_2:1658676-1658695 | None:intergenic | 40.0% | |
| TTGTTCGCCTGAAATTACAG+CGG | - | chr2_2:1658698-1658717 | None:intergenic | 40.0% | |
| GGCGAACAAACTGTAATTTC+AGG | + | chr2_2:1658709-1658728 | Msa0229850:CDS | 40.0% | |
| TAGAGAGCAGATGCTAAGTT+AGG | + | chr2_2:1658809-1658828 | Msa0229850:three_prime_UTR | 40.0% | |
| ! | AGATGCTAAGTTAGGTTGCT+TGG | + | chr2_2:1658817-1658836 | Msa0229850:three_prime_UTR | 40.0% |
| ! | TTGCTTGGAGTGCTTAAGTT+GGG | + | chr2_2:1658832-1658851 | Msa0229850:three_prime_UTR | 40.0% |
| AGGATGAGTTTCATCGACGA+CGG | + | chr2_2:1653712-1653731 | Msa0229850:exon | 45.0% | |
| GACTTAGACCCTTCCGATTT+CGG | + | chr2_2:1653742-1653761 | Msa0229850:CDS | 45.0% | |
| CTCCGTTACCTTCTTGAATG+CGG | + | chr2_2:1653838-1653857 | Msa0229850:CDS | 45.0% | |
| !! | GTTTTCGAGAAGCATACGAG+CGG | - | chr2_2:1653938-1653957 | None:intergenic | 45.0% |
| GCTCGTATGCTTCTCGAAAA+CGG | + | chr2_2:1653937-1653956 | Msa0229850:CDS | 45.0% | |
| ! | GAACTCTGCAACGGATTCAA+AGG | - | chr2_2:1654066-1654085 | None:intergenic | 45.0% |
| TCACGAAGAGAACTCTGCAA+CGG | - | chr2_2:1654075-1654094 | None:intergenic | 45.0% | |
| AAATCCACCGGAATGCGAAT+TGG | - | chr2_2:1654118-1654137 | None:intergenic | 45.0% | |
| ACCAGGAAACTGAAATCCAC+CGG | - | chr2_2:1654130-1654149 | None:intergenic | 45.0% | |
| ! | GGTCTTATGATTAGGGATGG+AGG | + | chr2_2:1654601-1654620 | Msa0229850:intron | 45.0% |
| ! | TGGAGGGTGTAGAAAGTTGA+AGG | + | chr2_2:1654618-1654637 | Msa0229850:intron | 45.0% |
| AGGGTGTAGAAAGTTGAAGG+AGG | + | chr2_2:1654621-1654640 | Msa0229850:intron | 45.0% | |
| AAGGGCTTAGTTGTTGTCAG+TGG | + | chr2_2:1654652-1654671 | Msa0229850:intron | 45.0% | |
| AAGACATTGTCCTCCAAGCA+GGG | - | chr2_2:1654915-1654934 | None:intergenic | 45.0% | |
| AAAGACATTGTCCTCCAAGC+AGG | - | chr2_2:1654916-1654935 | None:intergenic | 45.0% | |
| TGCCTGCAAAACAAGACATG+AGG | + | chr2_2:1654936-1654955 | Msa0229850:intron | 45.0% | |
| GCCTGCAAAACAAGACATGA+GGG | + | chr2_2:1654937-1654956 | Msa0229850:intron | 45.0% | |
| CCTGCAAAACAAGACATGAG+GGG | + | chr2_2:1654938-1654957 | Msa0229850:intron | 45.0% | |
| CAAAACAAGACATGAGGGGT+GGG | + | chr2_2:1654942-1654961 | Msa0229850:intron | 45.0% | |
| AAAACAAGACATGAGGGGTG+GGG | + | chr2_2:1654943-1654962 | Msa0229850:intron | 45.0% | |
| TGGGTATGAGGAACATCACA+AGG | + | chr2_2:1655507-1655526 | Msa0229850:intron | 45.0% | |
| GGGTATGAGGAACATCACAA+GGG | + | chr2_2:1655508-1655527 | Msa0229850:intron | 45.0% | |
| !! | AAGAGTGCTCCACCTCAAAT+AGG | + | chr2_2:1655550-1655569 | Msa0229850:intron | 45.0% |
| ACACACACACACATGTGAGA+TGG | + | chr2_2:1655938-1655957 | Msa0229850:intron | 45.0% | |
| CACACACACACATGTGAGAT+GGG | + | chr2_2:1655939-1655958 | Msa0229850:intron | 45.0% | |
| ACACACACACATGTGAGATG+GGG | + | chr2_2:1655940-1655959 | Msa0229850:intron | 45.0% | |
| AAGACCCATTGAAGCTCACA+GGG | + | chr2_2:1656120-1656139 | Msa0229850:CDS | 45.0% | |
| ATGACCCTGTGAGCTTCAAT+GGG | - | chr2_2:1656127-1656146 | None:intergenic | 45.0% | |
| TATGACCCTGTGAGCTTCAA+TGG | - | chr2_2:1656128-1656147 | None:intergenic | 45.0% | |
| GCGGTGAAGTAAGATTTGCA+CGG | + | chr2_2:1656203-1656222 | Msa0229850:CDS | 45.0% | |
| CGGTGAAGTAAGATTTGCAC+GGG | + | chr2_2:1656204-1656223 | Msa0229850:CDS | 45.0% | |
| TATCCCTTCCTGAAGAAGAC+AGG | + | chr2_2:1656452-1656471 | Msa0229850:CDS | 45.0% | |
| AAGCCTGTCTTCTTCAGGAA+GGG | - | chr2_2:1656458-1656477 | None:intergenic | 45.0% | |
| AGTCAGAAGGATTCTACGCA+AGG | - | chr2_2:1656488-1656507 | None:intergenic | 45.0% | |
| TAGAGGTTTAGCCATCTGCA+TGG | - | chr2_2:1656581-1656600 | None:intergenic | 45.0% | |
| AGCAAGACTCTCACGTATGA+AGG | + | chr2_2:1656690-1656709 | Msa0229850:CDS | 45.0% | |
| CGTGTTCTTCAAGACAAGGA+AGG | - | chr2_2:1656753-1656772 | None:intergenic | 45.0% | |
| TGAAGAACACGACATGAGTG+TGG | + | chr2_2:1656762-1656781 | Msa0229850:CDS | 45.0% | |
| GATGTTTCCTCTTAAGCGTG+CGG | + | chr2_2:1657511-1657530 | Msa0229850:CDS | 45.0% | |
| ! | CTTCAGGTGATGCCATTTCT+AGG | - | chr2_2:1657559-1657578 | None:intergenic | 45.0% |
| AACCAATGGCAAAGCTCTTC+AGG | - | chr2_2:1657575-1657594 | None:intergenic | 45.0% | |
| GAGCCGTGGTAGATGAATTA+AGG | - | chr2_2:1658032-1658051 | None:intergenic | 45.0% | |
| CACGGCTCAAAATGACCTTA+GGG | + | chr2_2:1658044-1658063 | Msa0229850:intron | 45.0% | |
| CCTCTTCCAACATAACCCTA+AGG | - | chr2_2:1658062-1658081 | None:intergenic | 45.0% | |
| CCTTAGGGTTATGTTGGAAG+AGG | + | chr2_2:1658059-1658078 | Msa0229850:intron | 45.0% | |
| TACTCAGCAGTTAGGCAGTT+AGG | - | chr2_2:1658116-1658135 | None:intergenic | 45.0% | |
| GGCTACAATACTCAGCAGTT+AGG | - | chr2_2:1658124-1658143 | None:intergenic | 45.0% | |
| GTAAAGTCAACAGCATTGCC+CGG | - | chr2_2:1658405-1658424 | None:intergenic | 45.0% | |
| GCAGAGCATGAAAAGTCATC+AGG | + | chr2_2:1658616-1658635 | Msa0229850:CDS | 45.0% | |
| GGTGATTGGAGAGAAAGTCA+AGG | - | chr2_2:1658677-1658696 | None:intergenic | 45.0% | |
| CCTGAAATTACAGCGGTGAT+TGG | - | chr2_2:1658691-1658710 | None:intergenic | 45.0% | |
| CCAATCACCGCTGTAATTTC+AGG | + | chr2_2:1658688-1658707 | Msa0229850:CDS | 45.0% | |
| ! | GTTGCTTGGAGTGCTTAAGT+TGG | + | chr2_2:1658831-1658850 | Msa0229850:three_prime_UTR | 45.0% |
| !! | AATATTTATTATATTTGAAT+AGG | + | chr2_2:1656031-1656050 | Msa0229850:intron | 5.0% |
| !! | GAAAAAAAAAAAAAAAAAAA+AGG | + | chr2_2:1657919-1657938 | Msa0229850:intron | 5.0% |
| ATGAGTTTCATCGACGACGG+CGG | + | chr2_2:1653715-1653734 | Msa0229850:CDS | 50.0% | |
| CTGATGTGCCGAAATCGGAA+GGG | - | chr2_2:1653753-1653772 | None:intergenic | 50.0% | |
| ACTGATGTGCCGAAATCGGA+AGG | - | chr2_2:1653754-1653773 | None:intergenic | 50.0% | |
| CTTGGAAAACGTCGCCGTTT+GGG | - | chr2_2:1653792-1653811 | None:intergenic | 50.0% | |
| CGCCGCATTCAAGAAGGTAA+CGG | - | chr2_2:1653843-1653862 | None:intergenic | 50.0% | |
| CGTTAACGCCGCATTCAAGA+AGG | - | chr2_2:1653849-1653868 | None:intergenic | 50.0% | |
| GAGACAAGCGTAGTAGAGAG+CGG | - | chr2_2:1653899-1653918 | None:intergenic | 50.0% | |
| TGCTCCGAACACACGTTTGA+CGG | + | chr2_2:1653967-1653986 | Msa0229850:CDS | 50.0% | |
| GTCACCGTCAAACGTGTGTT+CGG | - | chr2_2:1653974-1653993 | None:intergenic | 50.0% | |
| AACACACGTTTGACGGTGAC+CGG | + | chr2_2:1653974-1653993 | Msa0229850:CDS | 50.0% | |
| ! | TGCAACGGATTCAAAGGAGG+AGG | - | chr2_2:1654060-1654079 | None:intergenic | 50.0% |
| ! | CTCTGCAACGGATTCAAAGG+AGG | - | chr2_2:1654063-1654082 | None:intergenic | 50.0% |
| ! | TCCGGTGGATTTCAGTTTCC+TGG | + | chr2_2:1654126-1654145 | Msa0229850:CDS | 50.0% |
| ! | TGTTAATGTGTCGTGTCGGC+TGG | - | chr2_2:1654783-1654802 | None:intergenic | 50.0% |
| GTGCTTAATCTTCCCCTGCT+TGG | + | chr2_2:1654899-1654918 | Msa0229850:intron | 50.0% | |
| CTTAATCTTCCCCTGCTTGG+AGG | + | chr2_2:1654902-1654921 | Msa0229850:intron | 50.0% | |
| AGACATTGTCCTCCAAGCAG+GGG | - | chr2_2:1654914-1654933 | None:intergenic | 50.0% | |
| !!! | CCCCTCATGTCTTGTTTTGC+AGG | - | chr2_2:1654941-1654960 | None:intergenic | 50.0% |
| GCAAAACAAGACATGAGGGG+TGG | + | chr2_2:1654941-1654960 | Msa0229850:intron | 50.0% | |
| !! | GTGGGGTACTGTTTGTGCAA+TGG | + | chr2_2:1654960-1654979 | Msa0229850:intron | 50.0% |
| CTAGTGAGACGATATGTGCC+TGG | - | chr2_2:1655298-1655317 | None:intergenic | 50.0% | |
| CAGGCACATATCGTCTCACT+AGG | + | chr2_2:1655296-1655315 | Msa0229850:intron | 50.0% | |
| !!! | TCGTCTCACTAGGTTTTGGG+TGG | + | chr2_2:1655306-1655325 | Msa0229850:intron | 50.0% |
| !!! | CGTCTCACTAGGTTTTGGGT+GGG | + | chr2_2:1655307-1655326 | Msa0229850:intron | 50.0% |
| TACCACGGTCGTGCCAAATA+TGG | + | chr2_2:1655440-1655459 | Msa0229850:intron | 50.0% | |
| GTTGGAACTGAACCCTTGAG+TGG | - | chr2_2:1656065-1656084 | None:intergenic | 50.0% | |
| CACATCTGGGGGAAAGTAGT+TGG | - | chr2_2:1656083-1656102 | None:intergenic | 50.0% | |
| CAACTACTTTCCCCCAGATG+TGG | + | chr2_2:1656081-1656100 | Msa0229850:CDS | 50.0% | |
| GAAGACCCATTGAAGCTCAC+AGG | + | chr2_2:1656119-1656138 | Msa0229850:CDS | 50.0% | |
| GAGACTGATTGGAAAGAGCG+CGG | + | chr2_2:1656184-1656203 | Msa0229850:CDS | 50.0% | |
| GAAGCCTGTCTTCTTCAGGA+AGG | - | chr2_2:1656459-1656478 | None:intergenic | 50.0% | |
| TAGGATGGATGCCATGCAGA+TGG | + | chr2_2:1656567-1656586 | Msa0229850:CDS | 50.0% | |
| !! | CTTGGTGCCACACCTAGAAA+TGG | + | chr2_2:1657544-1657563 | Msa0229850:CDS | 50.0% |
| ! | GGTGATGCCATTTCTAGGTG+TGG | - | chr2_2:1657554-1657573 | None:intergenic | 50.0% |
| CACCTGAAGAGCTTTGCCAT+TGG | + | chr2_2:1657570-1657589 | Msa0229850:CDS | 50.0% | |
| !! | CCTAAGGTCATTTTGAGCCG+TGG | - | chr2_2:1658046-1658065 | None:intergenic | 50.0% |
| CCACGGCTCAAAATGACCTT+AGG | + | chr2_2:1658043-1658062 | Msa0229850:intron | 50.0% | |
| ! | CTGAGTATTGTAGCCTGTCG+TGG | + | chr2_2:1658129-1658148 | Msa0229850:intron | 50.0% |
| TTGACTTTACCGCCACCATC+TGG | + | chr2_2:1658415-1658434 | Msa0229850:CDS | 50.0% | |
| AGAGATGAGTCTCCAGATGG+TGG | - | chr2_2:1658430-1658449 | None:intergenic | 50.0% | |
| CGAAGAGATGAGTCTCCAGA+TGG | - | chr2_2:1658433-1658452 | None:intergenic | 50.0% | |
| ATCTCTCTCGTCAAGCTCAG+CGG | - | chr2_2:1658548-1658567 | None:intergenic | 50.0% | |
| CAAGCGCCTAGAGATGCTTA+TGG | + | chr2_2:1658588-1658607 | Msa0229850:CDS | 50.0% | |
| GGGGACTGATGTGCCGAAAT+CGG | - | chr2_2:1653758-1653777 | None:intergenic | 55.0% | |
| GCTTGGAAAACGTCGCCGTT+TGG | - | chr2_2:1653793-1653812 | None:intergenic | 55.0% | |
| ACGTCAACGCACGTGACCAA+TGG | + | chr2_2:1653866-1653885 | Msa0229850:CDS | 55.0% | |
| CGTCAACGCACGTGACCAAT+GGG | + | chr2_2:1653867-1653886 | Msa0229850:CDS | 55.0% | |
| ACAAGCGTAGTAGAGAGCGG+TGG | - | chr2_2:1653896-1653915 | None:intergenic | 55.0% | |
| CTCTACTACGCTTGTCTCGC+CGG | + | chr2_2:1653901-1653920 | Msa0229850:CDS | 55.0% | |
| TGTCCCGCCAATTCGCATTC+CGG | + | chr2_2:1654108-1654127 | Msa0229850:CDS | 55.0% | |
| TCCACCGGAATGCGAATTGG+CGG | - | chr2_2:1654115-1654134 | None:intergenic | 55.0% | |
| GTGCCTGACGAGTCTTACCA+CGG | + | chr2_2:1655425-1655444 | Msa0229850:intron | 55.0% | |
| AGCCATATTTGGCACGACCG+TGG | - | chr2_2:1655445-1655464 | None:intergenic | 55.0% | |
| ACGGTCGTGCCAAATATGGC+TGG | + | chr2_2:1655444-1655463 | Msa0229850:intron | 55.0% | |
| GCAGGAAGCCTGTCTTCTTC+AGG | - | chr2_2:1656463-1656482 | None:intergenic | 55.0% | |
| AGGATTCTACGCAAGGCTGC+AGG | - | chr2_2:1656481-1656500 | None:intergenic | 55.0% | |
| CAGGTACACCGATCGTTTGC+AGG | + | chr2_2:1657356-1657375 | Msa0229850:intron | 55.0% | |
| GTTTCCTCTTAAGCGTGCGG+TGG | + | chr2_2:1657514-1657533 | Msa0229850:CDS | 55.0% | |
| ! | GATGAGTCTCCAGATGGTGG+CGG | - | chr2_2:1658427-1658446 | None:intergenic | 55.0% |
| !! | GAAGGTAACGGAGACGGTCG+AGG | - | chr2_2:1653831-1653850 | None:intergenic | 60.0% |
| AGAGAGCGGTGGAGTCCCAT+TGG | - | chr2_2:1653885-1653904 | None:intergenic | 60.0% | |
| GAAGCATACGAGCGGCATCG+AGG | - | chr2_2:1653930-1653949 | None:intergenic | 60.0% | |
| CCACCGGAATGCGAATTGGC+GGG | - | chr2_2:1654114-1654133 | None:intergenic | 60.0% | |
| CGACCGTGGTAAGACTCGTC+AGG | - | chr2_2:1655431-1655450 | None:intergenic | 60.0% | |
| TCAGCCACCGCACGCTTAAG+AGG | - | chr2_2:1657521-1657540 | None:intergenic | 60.0% | |
| ACAACTGTCCCGAGCATGCC+TGG | + | chr2_2:1658454-1658473 | Msa0229850:CDS | 60.0% | |
| CAACTGTCCCGAGCATGCCT+GGG | + | chr2_2:1658455-1658474 | Msa0229850:CDS | 60.0% | |
| AGGGAAGACCCAGGCATGCT+CGG | - | chr2_2:1658466-1658485 | None:intergenic | 60.0% | |
| ! | GTTTTCCAAGCCTCCCGCGC+CGG | + | chr2_2:1653802-1653821 | Msa0229850:CDS | 65.0% |
| ! | ACGAGCGGCATCGAGGTGAC+CGG | - | chr2_2:1653923-1653942 | None:intergenic | 65.0% |
| CCCGCCAATTCGCATTCCGG+TGG | + | chr2_2:1654111-1654130 | Msa0229850:CDS | 65.0% | |
| GCGTGCGGTGGCTGATGTCT+TGG | + | chr2_2:1657526-1657545 | Msa0229850:CDS | 65.0% | |
| GGGAAGACCCAGGCATGCTC+GGG | - | chr2_2:1658465-1658484 | None:intergenic | 65.0% | |
| ACGGAGACGGTCGAGGTCGC+CGG | - | chr2_2:1653824-1653843 | None:intergenic | 70.0% | |
| ! | ACGGTCGAGGTCGCCGGCGC+GGG | - | chr2_2:1653818-1653837 | None:intergenic | 80.0% |
| ! | GACGGTCGAGGTCGCCGGCG+CGG | - | chr2_2:1653819-1653838 | None:intergenic | 80.0% |
| ! | GGTCGCCGGCGCGGGAGGCT+TGG | - | chr2_2:1653810-1653829 | None:intergenic | 85.0% |
| ! | GTCGAGGTCGCCGGCGCGGG+AGG | - | chr2_2:1653815-1653834 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1653664 | 1658922 | 1653664 | ID=Msa0229850;Name=Msa0229850 |
| chr2_2 | mRNA | 1653664 | 1658922 | 1653664 | ID=Msa0229850-mRNA-1;Parent=Msa0229850;Name=Msa0229850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|1|1|1|1|1|5|172|597 |
| chr2_2 | exon | 1653664 | 1654147 | 1653664 | ID=Msa0229850-mRNA-1:exon:523;Parent=Msa0229850-mRNA-1 |
| chr2_2 | exon | 1656053 | 1656812 | 1656053 | ID=Msa0229850-mRNA-1:exon:524;Parent=Msa0229850-mRNA-1 |
| chr2_2 | exon | 1657359 | 1657395 | 1657359 | ID=Msa0229850-mRNA-1:exon:525;Parent=Msa0229850-mRNA-1 |
| chr2_2 | exon | 1657476 | 1657609 | 1657476 | ID=Msa0229850-mRNA-1:exon:526;Parent=Msa0229850-mRNA-1 |
| chr2_2 | exon | 1658321 | 1658922 | 1658321 | ID=Msa0229850-mRNA-1:exon:527;Parent=Msa0229850-mRNA-1 |
| chr2_2 | five_prime_UTR | 1653664 | 1653714 | 1653664 | ID=Msa0229850-mRNA-1:five_prime_utr;Parent=Msa0229850-mRNA-1 |
| chr2_2 | CDS | 1653715 | 1654147 | 1653715 | ID=Msa0229850-mRNA-1:cds;Parent=Msa0229850-mRNA-1 |
| chr2_2 | CDS | 1656053 | 1656812 | 1656053 | ID=Msa0229850-mRNA-1:cds;Parent=Msa0229850-mRNA-1 |
| chr2_2 | CDS | 1657359 | 1657395 | 1657359 | ID=Msa0229850-mRNA-1:cds;Parent=Msa0229850-mRNA-1 |
| chr2_2 | CDS | 1657476 | 1657609 | 1657476 | ID=Msa0229850-mRNA-1:cds;Parent=Msa0229850-mRNA-1 |
| chr2_2 | CDS | 1658321 | 1658750 | 1658321 | ID=Msa0229850-mRNA-1:cds;Parent=Msa0229850-mRNA-1 |
| chr2_2 | three_prime_UTR | 1658751 | 1658922 | 1658751 | ID=Msa0229850-mRNA-1:three_prime_utr;Parent=Msa0229850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
