AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050950 MtrunA17_Chr1g0154521 97.548 367 9 0 1 367 1 367 0.0 743
Msa0050950 MtrunA17_Chr3g0141321 80.793 328 50 3 40 367 26 340 0.0 548
Msa0050950 MtrunA17_Chr5g0403501 76.205 332 68 3 46 367 37 367 0.0 531
Msa0050950 MtrunA17_Chr8g0373671 72.948 329 80 3 40 366 23 344 0.0 512
Msa0050950 MtrunA17_Chr3g0127611 62.145 317 101 4 46 360 34 333 8.79e-147 418
Msa0050950 MtrunA17_Chr6g0451981 55.432 359 141 6 10 358 10 359 8.12e-141 404
Msa0050950 MtrunA17_Chr7g0259321 59.048 315 108 2 46 360 51 344 7.14e-139 399
Msa0050950 MtrunA17_Chr7g0269751 54.775 356 137 6 12 358 10 350 1.33e-137 396
Msa0050950 MtrunA17_Chr5g0414981 54.885 348 138 5 20 360 39 374 4.50e-136 395
Msa0050950 MtrunA17_Chr4g0066331 58.675 317 112 4 46 361 42 340 1.16e-135 390
Msa0050950 MtrunA17_Chr1g0196511 58.466 313 109 2 46 358 54 345 5.35e-133 384
Msa0050950 MtrunA17_Chr2g0308241 32.642 193 118 6 165 356 340 521 3.13e-21 95.1
Msa0050950 MtrunA17_Chr4g0061711 33.161 193 117 6 165 356 340 521 2.48e-20 92.4
Msa0050950 MtrunA17_Chr3g0138381 27.843 255 171 8 111 363 414 657 3.67e-19 89.0
Msa0050950 MtrunA17_Chr2g0283461 31.351 185 119 5 165 349 339 515 5.81e-18 85.1
Msa0050950 MtrunA17_Chr2g0319311 30.151 199 122 8 165 356 338 526 6.23e-18 85.1
Msa0050950 MtrunA17_Chr8g0383241 29.444 180 114 5 165 341 295 464 1.12e-17 84.3
Msa0050950 MtrunA17_Chr7g0235161 29.167 192 126 6 165 356 364 545 2.17e-16 80.5
Msa0050950 MtrunA17_Chr2g0290961 29.444 180 114 5 165 341 471 640 3.13e-16 80.1
Msa0050950 MtrunA17_Chr7g0218571 27.638 199 127 7 165 356 334 522 4.19e-16 79.7
Msa0050950 MtrunA17_Chr7g0246371 27.136 199 135 5 165 363 468 656 5.71e-16 79.3
Msa0050950 MtrunA17_Chr8g0351091 28.249 177 116 5 165 339 416 583 7.57e-16 79.0
Msa0050950 MtrunA17_Chr6g0456071 28.646 192 127 6 165 356 359 540 1.13e-14 75.5
Msa0050950 MtrunA17_Chr3g0097091 21.835 316 188 10 86 356 214 515 1.42e-14 75.1
Msa0050950 MtrunA17_Chr7g0260711 27.957 186 124 7 163 345 453 631 2.86e-13 71.2
Msa0050950 MtrunA17_Chr6g0454101 28.947 114 73 3 245 356 410 517 1.53e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050950 AT3G50760.1 68.539 356 87 6 13 365 5 338 2.46e-178 499
Msa0050950 AT1G19300.1 76.061 330 76 2 40 367 23 351 5.35e-176 493
Msa0050950 AT4G02130.3 60.759 316 110 3 46 360 41 343 3.35e-145 415
Msa0050950 AT4G02130.1 60.759 316 110 3 46 360 41 343 3.35e-145 415
Msa0050950 AT4G02130.2 60.759 316 110 3 46 360 41 343 3.35e-145 415
Msa0050950 AT3G62660.1 67.138 283 89 2 76 358 77 355 2.75e-142 408
Msa0050950 AT1G02720.1 56.213 338 136 3 24 360 32 358 2.53e-139 400
Msa0050950 AT1G02720.2 56.213 338 136 3 24 360 32 358 2.53e-139 400
Msa0050950 AT1G70090.1 52.575 369 160 5 1 360 1 363 1.25e-138 400
Msa0050950 AT1G70090.2 52.575 369 160 5 1 360 1 363 1.25e-138 400
Msa0050950 AT3G06260.1 58.044 317 114 4 46 361 46 344 1.44e-137 395
Msa0050950 AT1G13250.1 59.877 324 119 4 46 367 31 345 5.91e-137 394
Msa0050950 AT1G24170.1 57.994 319 128 3 46 360 50 366 2.21e-136 394
Msa0050950 AT3G28340.1 57.595 316 124 4 48 361 44 351 1.04e-135 392
Msa0050950 AT1G18580.1 32.258 186 117 5 165 349 342 519 7.04e-21 94.4
Msa0050950 AT5G47780.1 31.667 180 110 5 165 341 420 589 1.18e-19 90.9
Msa0050950 AT5G54690.1 30.151 199 122 8 165 356 331 519 7.23e-19 88.6
Msa0050950 AT3G61130.1 30.198 202 125 7 165 363 477 665 8.96e-18 85.5
Msa0050950 AT4G38270.2 27.869 244 167 6 115 357 430 665 1.73e-17 84.3
Msa0050950 AT4G38270.1 27.869 244 167 6 115 357 434 669 1.92e-17 84.3
Msa0050950 AT3G25140.1 29.000 200 123 5 165 358 363 549 6.35e-17 82.4
Msa0050950 AT3G01040.1 25.287 261 172 9 110 356 233 484 8.70e-17 82.0
Msa0050950 AT2G30575.1 27.715 267 166 12 95 345 332 587 9.87e-17 82.0
Msa0050950 AT3G01040.2 27.778 198 128 7 165 356 329 517 1.69e-16 81.3
Msa0050950 AT3G01040.3 27.778 198 128 7 165 356 329 517 1.69e-16 81.3
Msa0050950 AT3G58790.1 30.000 200 122 8 165 356 336 525 1.89e-16 81.3
Msa0050950 AT3G58790.2 30.000 200 122 8 165 356 204 393 1.90e-16 80.5
Msa0050950 AT1G06780.2 27.586 261 162 9 95 339 324 573 1.95e-16 81.3
Msa0050950 AT1G06780.1 27.586 261 162 9 95 339 311 560 2.00e-16 81.3
Msa0050950 AT5G15470.1 26.768 198 130 7 165 356 329 517 5.88e-15 76.6
Msa0050950 AT2G46480.4 24.042 287 181 9 78 363 295 545 1.04e-14 75.9
Msa0050950 AT2G46480.3 24.042 287 181 9 78 363 282 532 1.04e-14 75.9
Msa0050950 AT2G20810.1 32.663 199 123 7 165 363 342 529 4.50e-13 70.9
Msa0050950 AT3G02350.1 29.167 192 126 6 165 356 365 546 6.66e-12 67.4
Msa0050950 AT2G46480.2 22.300 287 161 10 78 363 282 507 4.23e-11 64.7
Msa0050950 AT2G46480.1 22.300 287 161 10 78 363 295 520 5.39e-11 64.3

Find 74 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTCCTTTGGATGCTCTT+TGG 0.179612 1_2:+4986708 Msa0050950:CDS
TTGTCCTTTGGATGCTCTTT+GGG 0.232558 1_2:+4986709 Msa0050950:CDS
TCCTGTTCGGTGTCTTCTTC+TGG 0.234993 1_2:-4985861 None:intergenic
TTCGATGATTCAATCGTTTC+GGG 0.244627 1_2:+4986101 Msa0050950:CDS
CAATTATGCAAGAAGCTATT+TGG 0.253341 1_2:+4986166 Msa0050950:CDS
TTTACTTCACACCAACATTT+TGG 0.256817 1_2:+4986339 Msa0050950:CDS
AATCAAGAATCAAGAGAAAA+TGG 0.308067 1_2:-4986755 None:intergenic
TTACTTTAATACCGGGGTTA+TGG 0.328231 1_2:+4986406 Msa0050950:CDS
TTTCGATGATTCAATCGTTT+CGG 0.340870 1_2:+4986100 Msa0050950:CDS
TGCTAATAGACCTTGTCCTT+TGG 0.372206 1_2:+4986697 Msa0050950:CDS
AAACCTTGTTACTTTAATAC+CGG 0.397438 1_2:+4986398 Msa0050950:CDS
TCACTGATGGAGGCACAATT+TGG 0.401749 1_2:-4985837 None:intergenic
GTCTTCTTCTGGTTCACTGA+TGG 0.403834 1_2:-4985850 None:intergenic
TTGTTCCTGTGGATCATAGA+TGG 0.412121 1_2:+4986561 Msa0050950:CDS
GTCCAGTGAGTTTATTGCAT+TGG 0.440935 1_2:+4986642 Msa0050950:CDS
TGCAATAAACTCACTGGACC+TGG 0.441630 1_2:-4986638 None:intergenic
TGCCACATGGACTGCTTCCT+CGG 0.445747 1_2:-4985904 None:intergenic
AATTGTAGACTTGGAATTTG+AGG 0.447752 1_2:-4986079 None:intergenic
AGGTAAACCATGGGTGAGAT+TGG 0.454495 1_2:+4986673 Msa0050950:CDS
GCGAATGTTAAAGACAAAGA+TGG 0.456493 1_2:-4986368 None:intergenic
TTATTGCATTGGAGTGGAAA+AGG 0.458081 1_2:+4986653 Msa0050950:CDS
TGTAAGAAAAGTTGTGTACT+TGG 0.460356 1_2:+4986208 Msa0050950:CDS
ACCAGAAGAAGACACCGAAC+AGG 0.463727 1_2:+4985860 Msa0050950:CDS
TTTGGTGAGTTGTAGAATTG+AGG 0.465286 1_2:-4985819 None:intergenic
GACAGAGAGGATTGCAGCCA+TGG 0.467068 1_2:-4985958 None:intergenic
GGTGTCTGCAAAAGATCATA+AGG 0.476961 1_2:-4986734 None:intergenic
AGATGGAATCAACATGGTCT+TGG 0.481062 1_2:+4986578 Msa0050950:CDS
TTGGTGAGTTGTAGAATTGA+GGG 0.481706 1_2:-4985818 None:intergenic
TGCAGGGGAAATTGTTCCTG+TGG 0.488544 1_2:+4986550 Msa0050950:CDS
TTCTTCTGGTTCACTGATGG+AGG 0.490980 1_2:-4985847 None:intergenic
AATCATCGAAATTGTAGACT+TGG 0.491592 1_2:-4986088 None:intergenic
TAGACTTGGAATTTGAGGTA+AGG 0.496272 1_2:-4986074 None:intergenic
AACCTTGTTACTTTAATACC+GGG 0.498666 1_2:+4986399 Msa0050950:CDS
CTTTGTCGAGATCTTCATCC+AGG 0.499442 1_2:+4986620 Msa0050950:CDS
AGACTTGGAATTTGAGGTAA+GGG 0.499769 1_2:-4986073 None:intergenic
AACATATATCCGAGGTTCCA+TGG 0.527756 1_2:+4985941 Msa0050950:CDS
AACAAAGATTGAGGAATGGA+TGG 0.528450 1_2:+4986466 Msa0050950:CDS
CGATATCATCAACTAAGATA+AGG 0.533837 1_2:-4986238 None:intergenic
CGAATGTTAAAGACAAAGAT+GGG 0.534888 1_2:-4986367 None:intergenic
TGTTAAAGACAAAGATGGGT+TGG 0.537673 1_2:-4986363 None:intergenic
CTCCAATGCAATAAACTCAC+TGG 0.539210 1_2:-4986644 None:intergenic
ATGAAGAAGTGAAGTGTTTG+AGG 0.542144 1_2:-4986030 None:intergenic
AGGATGAGAATCTATGAACT+TGG 0.551100 1_2:+4986500 Msa0050950:CDS
TTTGTGGACATGATGAGTGT+TGG 0.558842 1_2:-4985983 None:intergenic
GTGAGTTTATTGCATTGGAG+TGG 0.561039 1_2:+4986647 Msa0050950:CDS
ATCAAGTGCTGATCGAATTG+AGG 0.561859 1_2:-4986135 None:intergenic
GTGGACATGATGAGTGTTGG+AGG 0.566977 1_2:-4985980 None:intergenic
AATGGATGGAATTACAAAAG+AGG 0.570341 1_2:+4986480 Msa0050950:CDS
TGATTCCATCTATGATCCAC+AGG 0.576078 1_2:-4986566 None:intergenic
TGGAATCAACATGGTCTTGG+TGG 0.582134 1_2:+4986581 Msa0050950:CDS
TTAGCATCCAATCTCACCCA+TGG 0.582810 1_2:-4986680 None:intergenic
TGGTGAGTTGTAGAATTGAG+GGG 0.584816 1_2:-4985817 None:intergenic
TAGCTTCTTGCATAATTGAG+TGG 0.588805 1_2:-4986161 None:intergenic
ATATGTGTCAGTGTCCTGTT+CGG 0.588856 1_2:-4985874 None:intergenic
TGATTACACAACAAAGATTG+AGG 0.596745 1_2:+4986457 Msa0050950:CDS
CAAAGAGCATCCAAAGGACA+AGG 0.605477 1_2:-4986707 None:intergenic
GGATTGCAGCCATGGAACCT+CGG 0.623683 1_2:-4985950 None:intergenic
TAGAGATTGAAGACACAAGA+GGG 0.627737 1_2:-4985724 None:intergenic
ACCCCGGTATTAAAGTAACA+AGG 0.631984 1_2:-4986401 None:intergenic
AAATTTGCATTGCAATACTC+CGG 0.633009 1_2:-4986311 None:intergenic
ATGAGTGTTGGAGGACAGAG+AGG 0.637026 1_2:-4985971 None:intergenic
GGAGTGGAAAAGGTAAACCA+TGG 0.642822 1_2:+4986663 Msa0050950:CDS
TAGATCAATTACCATAACCC+CGG 0.646191 1_2:-4986417 None:intergenic
GATGGGTTGGACCAAAATGT+TGG 0.647131 1_2:-4986350 None:intergenic
ACACAACAAAGATTGAGGAA+TGG 0.651197 1_2:+4986462 Msa0050950:CDS
TGTCTAATGTCATTGCCACA+TGG 0.655175 1_2:-4985917 None:intergenic
ATAGAGATTGAAGACACAAG+AGG 0.656250 1_2:-4985725 None:intergenic
GAGTGGAAAAGGTAAACCAT+GGG 0.662161 1_2:+4986664 Msa0050950:CDS
ACCTTGTTACTTTAATACCG+GGG 0.664037 1_2:+4986400 Msa0050950:CDS
CTCCGAGGAAGCAGTCCATG+TGG 0.686524 1_2:+4985902 Msa0050950:CDS
GGTGCCCAAAGAGCATCCAA+AGG 0.694592 1_2:-4986713 None:intergenic
GATCATAGATGGAATCAACA+TGG 0.708687 1_2:+4986572 Msa0050950:CDS
TTAGACACAACATATATCCG+AGG 0.716181 1_2:+4985933 Msa0050950:CDS
TGACACATATATCTGCTCCG+AGG 0.786200 1_2:+4985887 Msa0050950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAAGAGTTTTGGTTT+TGG - chr1_2:4985690-4985709 None:intergenic 20.0%
!!! AGAAAGAAAAATAAGAGTTT+TGG - chr1_2:4985696-4985715 None:intergenic 20.0%
!!! AATTGTTTTTCTTGTTTTTG+AGG - chr1_2:4985775-4985794 None:intergenic 20.0%
!!! AAAAATAAGAGTTTTGGTTT+TGG - chr1_2:4985690-4985709 None:intergenic 20.0%
!!! AGAAAGAAAAATAAGAGTTT+TGG - chr1_2:4985696-4985715 None:intergenic 20.0%
!!! AATTGTTTTTCTTGTTTTTG+AGG - chr1_2:4985775-4985794 None:intergenic 20.0%
!!! TGTTTTTGAGGCATTTTTTT+TGG - chr1_2:4985763-4985782 None:intergenic 25.0%
!! ACAACTTTTCTTACACATAA+TGG - chr1_2:4986203-4986222 None:intergenic 25.0%
!!! AAACCTTGTTACTTTAATAC+CGG + chr1_2:4986398-4986417 Msa0050950:CDS 25.0%
! TGGTAATTGATCTAGAAAAA+TGG + chr1_2:4986426-4986445 Msa0050950:CDS 25.0%
!!! TGTTTTTGAGGCATTTTTTT+TGG - chr1_2:4985763-4985782 None:intergenic 25.0%
!! ACAACTTTTCTTACACATAA+TGG - chr1_2:4986203-4986222 None:intergenic 25.0%
!!! AAACCTTGTTACTTTAATAC+CGG + chr1_2:4986398-4986417 Msa0050950:CDS 25.0%
! TGGTAATTGATCTAGAAAAA+TGG + chr1_2:4986426-4986445 Msa0050950:CDS 25.0%
! AAGTGAAAGATGATGTTTTG+TGG - chr1_2:4986002-4986021 None:intergenic 30.0%
!!! AGGGAATGATTTTGAGATTA+TGG - chr1_2:4986057-4986076 None:intergenic 30.0%
AATTGTAGACTTGGAATTTG+AGG - chr1_2:4986082-4986101 None:intergenic 30.0%
AATCATCGAAATTGTAGACT+TGG - chr1_2:4986091-4986110 None:intergenic 30.0%
TTTCGATGATTCAATCGTTT+CGG + chr1_2:4986100-4986119 Msa0050950:CDS 30.0%
CAATTATGCAAGAAGCTATT+TGG + chr1_2:4986166-4986185 Msa0050950:CDS 30.0%
TGTAAGAAAAGTTGTGTACT+TGG + chr1_2:4986208-4986227 Msa0050950:CDS 30.0%
CGATATCATCAACTAAGATA+AGG - chr1_2:4986241-4986260 None:intergenic 30.0%
!!! TGCCAAAACTGCATTTTTTT+CGG - chr1_2:4986288-4986307 None:intergenic 30.0%
AAATTTGCATTGCAATACTC+CGG - chr1_2:4986314-4986333 None:intergenic 30.0%
! TTTACTTCACACCAACATTT+TGG + chr1_2:4986339-4986358 Msa0050950:CDS 30.0%
CGAATGTTAAAGACAAAGAT+GGG - chr1_2:4986370-4986389 None:intergenic 30.0%
!! AACCTTGTTACTTTAATACC+GGG + chr1_2:4986399-4986418 Msa0050950:CDS 30.0%
TGATTACACAACAAAGATTG+AGG + chr1_2:4986457-4986476 Msa0050950:CDS 30.0%
AATGGATGGAATTACAAAAG+AGG + chr1_2:4986480-4986499 Msa0050950:CDS 30.0%
!!! CTTTTTTGCTTGTTTTTGCA+GGG + chr1_2:4986534-4986553 Msa0050950:CDS 30.0%
!!! TTTTTTGCTTGTTTTTGCAG+GGG + chr1_2:4986535-4986554 Msa0050950:CDS 30.0%
! AAGTGAAAGATGATGTTTTG+TGG - chr1_2:4986002-4986021 None:intergenic 30.0%
!!! AGGGAATGATTTTGAGATTA+TGG - chr1_2:4986057-4986076 None:intergenic 30.0%
AATTGTAGACTTGGAATTTG+AGG - chr1_2:4986082-4986101 None:intergenic 30.0%
AATCATCGAAATTGTAGACT+TGG - chr1_2:4986091-4986110 None:intergenic 30.0%
TTTCGATGATTCAATCGTTT+CGG + chr1_2:4986100-4986119 Msa0050950:CDS 30.0%
CAATTATGCAAGAAGCTATT+TGG + chr1_2:4986166-4986185 Msa0050950:CDS 30.0%
TGTAAGAAAAGTTGTGTACT+TGG + chr1_2:4986208-4986227 Msa0050950:CDS 30.0%
CGATATCATCAACTAAGATA+AGG - chr1_2:4986241-4986260 None:intergenic 30.0%
!!! TGCCAAAACTGCATTTTTTT+CGG - chr1_2:4986288-4986307 None:intergenic 30.0%
AAATTTGCATTGCAATACTC+CGG - chr1_2:4986314-4986333 None:intergenic 30.0%
! TTTACTTCACACCAACATTT+TGG + chr1_2:4986339-4986358 Msa0050950:CDS 30.0%
CGAATGTTAAAGACAAAGAT+GGG - chr1_2:4986370-4986389 None:intergenic 30.0%
!! AACCTTGTTACTTTAATACC+GGG + chr1_2:4986399-4986418 Msa0050950:CDS 30.0%
TGATTACACAACAAAGATTG+AGG + chr1_2:4986457-4986476 Msa0050950:CDS 30.0%
AATGGATGGAATTACAAAAG+AGG + chr1_2:4986480-4986499 Msa0050950:CDS 30.0%
!!! CTTTTTTGCTTGTTTTTGCA+GGG + chr1_2:4986534-4986553 Msa0050950:CDS 30.0%
!!! TTTTTTGCTTGTTTTTGCAG+GGG + chr1_2:4986535-4986554 Msa0050950:CDS 30.0%
TAGAGATTGAAGACACAAGA+GGG - chr1_2:4985727-4985746 None:intergenic 35.0%
ATAGAGATTGAAGACACAAG+AGG - chr1_2:4985728-4985747 None:intergenic 35.0%
!!! TGAGGCATTTTTTTTGGTGT+TGG - chr1_2:4985757-4985776 None:intergenic 35.0%
TTGGTGAGTTGTAGAATTGA+GGG - chr1_2:4985821-4985840 None:intergenic 35.0%
TTTGGTGAGTTGTAGAATTG+AGG - chr1_2:4985822-4985841 None:intergenic 35.0%
TTAGACACAACATATATCCG+AGG + chr1_2:4985933-4985952 Msa0050950:CDS 35.0%
! ATGAAGAAGTGAAGTGTTTG+AGG - chr1_2:4986033-4986052 None:intergenic 35.0%
! AGACTTGGAATTTGAGGTAA+GGG - chr1_2:4986076-4986095 None:intergenic 35.0%
! TAGACTTGGAATTTGAGGTA+AGG - chr1_2:4986077-4986096 None:intergenic 35.0%
TTCGATGATTCAATCGTTTC+GGG + chr1_2:4986101-4986120 Msa0050950:CDS 35.0%
TAGCTTCTTGCATAATTGAG+TGG - chr1_2:4986164-4986183 None:intergenic 35.0%
!!! ACTGCATTTTTTTCGGCTAA+TGG - chr1_2:4986281-4986300 None:intergenic 35.0%
! AGCCGAAAAAAATGCAGTTT+TGG + chr1_2:4986283-4986302 Msa0050950:CDS 35.0%
TGTTAAAGACAAAGATGGGT+TGG - chr1_2:4986366-4986385 None:intergenic 35.0%
GCGAATGTTAAAGACAAAGA+TGG - chr1_2:4986371-4986390 None:intergenic 35.0%
!! ACCTTGTTACTTTAATACCG+GGG + chr1_2:4986400-4986419 Msa0050950:CDS 35.0%
TTACTTTAATACCGGGGTTA+TGG + chr1_2:4986406-4986425 Msa0050950:CDS 35.0%
TAGATCAATTACCATAACCC+CGG - chr1_2:4986420-4986439 None:intergenic 35.0%
ACACAACAAAGATTGAGGAA+TGG + chr1_2:4986462-4986481 Msa0050950:CDS 35.0%
AACAAAGATTGAGGAATGGA+TGG + chr1_2:4986466-4986485 Msa0050950:CDS 35.0%
AGGATGAGAATCTATGAACT+TGG + chr1_2:4986500-4986519 Msa0050950:CDS 35.0%
GCAAAAACAAGCAAAAAAGG+TGG - chr1_2:4986533-4986552 None:intergenic 35.0%
CCTGCAAAAACAAGCAAAAA+AGG - chr1_2:4986536-4986555 None:intergenic 35.0%
!!! CCTTTTTTGCTTGTTTTTGC+AGG + chr1_2:4986533-4986552 Msa0050950:CDS 35.0%
GATCATAGATGGAATCAACA+TGG + chr1_2:4986572-4986591 Msa0050950:CDS 35.0%
TTATTGCATTGGAGTGGAAA+AGG + chr1_2:4986653-4986672 Msa0050950:CDS 35.0%
TAGAGATTGAAGACACAAGA+GGG - chr1_2:4985727-4985746 None:intergenic 35.0%
ATAGAGATTGAAGACACAAG+AGG - chr1_2:4985728-4985747 None:intergenic 35.0%
!!! TGAGGCATTTTTTTTGGTGT+TGG - chr1_2:4985757-4985776 None:intergenic 35.0%
TTGGTGAGTTGTAGAATTGA+GGG - chr1_2:4985821-4985840 None:intergenic 35.0%
TTTGGTGAGTTGTAGAATTG+AGG - chr1_2:4985822-4985841 None:intergenic 35.0%
TTAGACACAACATATATCCG+AGG + chr1_2:4985933-4985952 Msa0050950:CDS 35.0%
! ATGAAGAAGTGAAGTGTTTG+AGG - chr1_2:4986033-4986052 None:intergenic 35.0%
! AGACTTGGAATTTGAGGTAA+GGG - chr1_2:4986076-4986095 None:intergenic 35.0%
! TAGACTTGGAATTTGAGGTA+AGG - chr1_2:4986077-4986096 None:intergenic 35.0%
TTCGATGATTCAATCGTTTC+GGG + chr1_2:4986101-4986120 Msa0050950:CDS 35.0%
TAGCTTCTTGCATAATTGAG+TGG - chr1_2:4986164-4986183 None:intergenic 35.0%
!!! ACTGCATTTTTTTCGGCTAA+TGG - chr1_2:4986281-4986300 None:intergenic 35.0%
! AGCCGAAAAAAATGCAGTTT+TGG + chr1_2:4986283-4986302 Msa0050950:CDS 35.0%
TGTTAAAGACAAAGATGGGT+TGG - chr1_2:4986366-4986385 None:intergenic 35.0%
GCGAATGTTAAAGACAAAGA+TGG - chr1_2:4986371-4986390 None:intergenic 35.0%
!! ACCTTGTTACTTTAATACCG+GGG + chr1_2:4986400-4986419 Msa0050950:CDS 35.0%
TTACTTTAATACCGGGGTTA+TGG + chr1_2:4986406-4986425 Msa0050950:CDS 35.0%
TAGATCAATTACCATAACCC+CGG - chr1_2:4986420-4986439 None:intergenic 35.0%
ACACAACAAAGATTGAGGAA+TGG + chr1_2:4986462-4986481 Msa0050950:CDS 35.0%
AACAAAGATTGAGGAATGGA+TGG + chr1_2:4986466-4986485 Msa0050950:CDS 35.0%
AGGATGAGAATCTATGAACT+TGG + chr1_2:4986500-4986519 Msa0050950:CDS 35.0%
GCAAAAACAAGCAAAAAAGG+TGG - chr1_2:4986533-4986552 None:intergenic 35.0%
CCTGCAAAAACAAGCAAAAA+AGG - chr1_2:4986536-4986555 None:intergenic 35.0%
!!! CCTTTTTTGCTTGTTTTTGC+AGG + chr1_2:4986533-4986552 Msa0050950:CDS 35.0%
GATCATAGATGGAATCAACA+TGG + chr1_2:4986572-4986591 Msa0050950:CDS 35.0%
TTATTGCATTGGAGTGGAAA+AGG + chr1_2:4986653-4986672 Msa0050950:CDS 35.0%
!!! GGCATTTTTTTTGGTGTTGG+AGG - chr1_2:4985754-4985773 None:intergenic 40.0%
TGGTGAGTTGTAGAATTGAG+GGG - chr1_2:4985820-4985839 None:intergenic 40.0%
ATATGTGTCAGTGTCCTGTT+CGG - chr1_2:4985877-4985896 None:intergenic 40.0%
TGTCTAATGTCATTGCCACA+TGG - chr1_2:4985920-4985939 None:intergenic 40.0%
AACATATATCCGAGGTTCCA+TGG + chr1_2:4985941-4985960 Msa0050950:CDS 40.0%
TTTGTGGACATGATGAGTGT+TGG - chr1_2:4985986-4986005 None:intergenic 40.0%
!! ATCAAGTGCTGATCGAATTG+AGG - chr1_2:4986138-4986157 None:intergenic 40.0%
ACCCCGGTATTAAAGTAACA+AGG - chr1_2:4986404-4986423 None:intergenic 40.0%
TTGTTCCTGTGGATCATAGA+TGG + chr1_2:4986561-4986580 Msa0050950:CDS 40.0%
TGATTCCATCTATGATCCAC+AGG - chr1_2:4986569-4986588 None:intergenic 40.0%
AGATGGAATCAACATGGTCT+TGG + chr1_2:4986578-4986597 Msa0050950:CDS 40.0%
!!! CTTGGTGGTGATAATTTTCG+AGG + chr1_2:4986596-4986615 Msa0050950:CDS 40.0%
GTCCAGTGAGTTTATTGCAT+TGG + chr1_2:4986642-4986661 Msa0050950:CDS 40.0%
CTCCAATGCAATAAACTCAC+TGG - chr1_2:4986647-4986666 None:intergenic 40.0%
GTGAGTTTATTGCATTGGAG+TGG + chr1_2:4986647-4986666 Msa0050950:CDS 40.0%
GAGTGGAAAAGGTAAACCAT+GGG + chr1_2:4986664-4986683 Msa0050950:CDS 40.0%
TGCTAATAGACCTTGTCCTT+TGG + chr1_2:4986697-4986716 Msa0050950:CDS 40.0%
TTGTCCTTTGGATGCTCTTT+GGG + chr1_2:4986709-4986728 Msa0050950:CDS 40.0%
GGTGTCTGCAAAAGATCATA+AGG - chr1_2:4986737-4986756 None:intergenic 40.0%
!!! GGCATTTTTTTTGGTGTTGG+AGG - chr1_2:4985754-4985773 None:intergenic 40.0%
TGGTGAGTTGTAGAATTGAG+GGG - chr1_2:4985820-4985839 None:intergenic 40.0%
ATATGTGTCAGTGTCCTGTT+CGG - chr1_2:4985877-4985896 None:intergenic 40.0%
TGTCTAATGTCATTGCCACA+TGG - chr1_2:4985920-4985939 None:intergenic 40.0%
AACATATATCCGAGGTTCCA+TGG + chr1_2:4985941-4985960 Msa0050950:CDS 40.0%
TTTGTGGACATGATGAGTGT+TGG - chr1_2:4985986-4986005 None:intergenic 40.0%
!! ATCAAGTGCTGATCGAATTG+AGG - chr1_2:4986138-4986157 None:intergenic 40.0%
ACCCCGGTATTAAAGTAACA+AGG - chr1_2:4986404-4986423 None:intergenic 40.0%
TTGTTCCTGTGGATCATAGA+TGG + chr1_2:4986561-4986580 Msa0050950:CDS 40.0%
TGATTCCATCTATGATCCAC+AGG - chr1_2:4986569-4986588 None:intergenic 40.0%
AGATGGAATCAACATGGTCT+TGG + chr1_2:4986578-4986597 Msa0050950:CDS 40.0%
!!! CTTGGTGGTGATAATTTTCG+AGG + chr1_2:4986596-4986615 Msa0050950:CDS 40.0%
GTCCAGTGAGTTTATTGCAT+TGG + chr1_2:4986642-4986661 Msa0050950:CDS 40.0%
CTCCAATGCAATAAACTCAC+TGG - chr1_2:4986647-4986666 None:intergenic 40.0%
GTGAGTTTATTGCATTGGAG+TGG + chr1_2:4986647-4986666 Msa0050950:CDS 40.0%
GAGTGGAAAAGGTAAACCAT+GGG + chr1_2:4986664-4986683 Msa0050950:CDS 40.0%
TGCTAATAGACCTTGTCCTT+TGG + chr1_2:4986697-4986716 Msa0050950:CDS 40.0%
TTGTCCTTTGGATGCTCTTT+GGG + chr1_2:4986709-4986728 Msa0050950:CDS 40.0%
GGTGTCTGCAAAAGATCATA+AGG - chr1_2:4986737-4986756 None:intergenic 40.0%
! TCACTGATGGAGGCACAATT+TGG - chr1_2:4985840-4985859 None:intergenic 45.0%
!! TTCTTCTGGTTCACTGATGG+AGG - chr1_2:4985850-4985869 None:intergenic 45.0%
!! GTCTTCTTCTGGTTCACTGA+TGG - chr1_2:4985853-4985872 None:intergenic 45.0%
TGACACATATATCTGCTCCG+AGG + chr1_2:4985887-4985906 Msa0050950:CDS 45.0%
!! AAATGCAGTTTTGGCAGCAC+CGG + chr1_2:4986292-4986311 Msa0050950:CDS 45.0%
!! GATGGGTTGGACCAAAATGT+TGG - chr1_2:4986353-4986372 None:intergenic 45.0%
GATCTAGAAAAATGGCGCGA+CGG + chr1_2:4986434-4986453 Msa0050950:CDS 45.0%
! TGGAATCAACATGGTCTTGG+TGG + chr1_2:4986581-4986600 Msa0050950:CDS 45.0%
CTTTGTCGAGATCTTCATCC+AGG + chr1_2:4986620-4986639 Msa0050950:CDS 45.0%
TGCAATAAACTCACTGGACC+TGG - chr1_2:4986641-4986660 None:intergenic 45.0%
GGAGTGGAAAAGGTAAACCA+TGG + chr1_2:4986663-4986682 Msa0050950:CDS 45.0%
AGGTAAACCATGGGTGAGAT+TGG + chr1_2:4986673-4986692 Msa0050950:CDS 45.0%
TTAGCATCCAATCTCACCCA+TGG - chr1_2:4986683-4986702 None:intergenic 45.0%
!! CAAAGAGCATCCAAAGGACA+AGG - chr1_2:4986710-4986729 None:intergenic 45.0%
CTTGTCCTTTGGATGCTCTT+TGG + chr1_2:4986708-4986727 Msa0050950:CDS 45.0%
! TCACTGATGGAGGCACAATT+TGG - chr1_2:4985840-4985859 None:intergenic 45.0%
!! TTCTTCTGGTTCACTGATGG+AGG - chr1_2:4985850-4985869 None:intergenic 45.0%
!! GTCTTCTTCTGGTTCACTGA+TGG - chr1_2:4985853-4985872 None:intergenic 45.0%
TGACACATATATCTGCTCCG+AGG + chr1_2:4985887-4985906 Msa0050950:CDS 45.0%
!! AAATGCAGTTTTGGCAGCAC+CGG + chr1_2:4986292-4986311 Msa0050950:CDS 45.0%
!! GATGGGTTGGACCAAAATGT+TGG - chr1_2:4986353-4986372 None:intergenic 45.0%
GATCTAGAAAAATGGCGCGA+CGG + chr1_2:4986434-4986453 Msa0050950:CDS 45.0%
! TGGAATCAACATGGTCTTGG+TGG + chr1_2:4986581-4986600 Msa0050950:CDS 45.0%
CTTTGTCGAGATCTTCATCC+AGG + chr1_2:4986620-4986639 Msa0050950:CDS 45.0%
TGCAATAAACTCACTGGACC+TGG - chr1_2:4986641-4986660 None:intergenic 45.0%
GGAGTGGAAAAGGTAAACCA+TGG + chr1_2:4986663-4986682 Msa0050950:CDS 45.0%
AGGTAAACCATGGGTGAGAT+TGG + chr1_2:4986673-4986692 Msa0050950:CDS 45.0%
TTAGCATCCAATCTCACCCA+TGG - chr1_2:4986683-4986702 None:intergenic 45.0%
!! CAAAGAGCATCCAAAGGACA+AGG - chr1_2:4986710-4986729 None:intergenic 45.0%
CTTGTCCTTTGGATGCTCTT+TGG + chr1_2:4986708-4986727 Msa0050950:CDS 45.0%
ACCAGAAGAAGACACCGAAC+AGG + chr1_2:4985860-4985879 Msa0050950:CDS 50.0%
!! TCCTGTTCGGTGTCTTCTTC+TGG - chr1_2:4985864-4985883 None:intergenic 50.0%
!! ATGAGTGTTGGAGGACAGAG+AGG - chr1_2:4985974-4985993 None:intergenic 50.0%
!! GTGGACATGATGAGTGTTGG+AGG - chr1_2:4985983-4986002 None:intergenic 50.0%
TGCAGGGGAAATTGTTCCTG+TGG + chr1_2:4986550-4986569 Msa0050950:CDS 50.0%
ACCAGAAGAAGACACCGAAC+AGG + chr1_2:4985860-4985879 Msa0050950:CDS 50.0%
!! TCCTGTTCGGTGTCTTCTTC+TGG - chr1_2:4985864-4985883 None:intergenic 50.0%
!! ATGAGTGTTGGAGGACAGAG+AGG - chr1_2:4985974-4985993 None:intergenic 50.0%
!! GTGGACATGATGAGTGTTGG+AGG - chr1_2:4985983-4986002 None:intergenic 50.0%
TGCAGGGGAAATTGTTCCTG+TGG + chr1_2:4986550-4986569 Msa0050950:CDS 50.0%
! TGCCACATGGACTGCTTCCT+CGG - chr1_2:4985907-4985926 None:intergenic 55.0%
GGATTGCAGCCATGGAACCT+CGG - chr1_2:4985953-4985972 None:intergenic 55.0%
GACAGAGAGGATTGCAGCCA+TGG - chr1_2:4985961-4985980 None:intergenic 55.0%
!! GGTGCCCAAAGAGCATCCAA+AGG - chr1_2:4986716-4986735 None:intergenic 55.0%
! TGCCACATGGACTGCTTCCT+CGG - chr1_2:4985907-4985926 None:intergenic 55.0%
GGATTGCAGCCATGGAACCT+CGG - chr1_2:4985953-4985972 None:intergenic 55.0%
GACAGAGAGGATTGCAGCCA+TGG - chr1_2:4985961-4985980 None:intergenic 55.0%
!! GGTGCCCAAAGAGCATCCAA+AGG - chr1_2:4986716-4986735 None:intergenic 55.0%
CTCCGAGGAAGCAGTCCATG+TGG + chr1_2:4985902-4985921 Msa0050950:CDS 60.0%
CTCCGAGGAAGCAGTCCATG+TGG + chr1_2:4985902-4985921 Msa0050950:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4985672 4986775 4985672 ID=Msa0050950;Name=Msa0050950
chr1_2 mRNA 4985672 4986775 4985672 ID=Msa0050950-mRNA-1;Parent=Msa0050950;Name=Msa0050950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|367
chr1_2 exon 4985672 4986775 4985672 ID=Msa0050950-mRNA-1:exon:1331;Parent=Msa0050950-mRNA-1
chr1_2 CDS 4985672 4986775 4985672 ID=Msa0050950-mRNA-1:cds;Parent=Msa0050950-mRNA-1
Gene Sequence

>Msa0050950

ATGAAGATCAATTTTCCAAAACCAAAACTCTTATTTTTCTTTCTCATTCTCTCCCTCTTGTGTCTTCAATCTCTATCATCCTCCAACACCAAAAAAAATGCCTCAAAAACAAGAAAAACAATTATCAATGATCAATTCAAAGAAGCCCCTCAATTCTACAACTCACCAAATTGTGCCTCCATCAGTGAACCAGAAGAAGACACCGAACAGGACACTGACACATATATCTGCTCCGAGGAAGCAGTCCATGTGGCAATGACATTAGACACAACATATATCCGAGGTTCCATGGCTGCAATCCTCTCTGTCCTCCAACACTCATCATGTCCACAAAACATCATCTTTCACTTCGTTTGTTCCTCAAACACTTCACTTCTTCATTCCATAATCTCAAAATCATTCCCTTACCTCAAATTCCAAGTCTACAATTTCGATGATTCAATCGTTTCGGGATTAATCTCAACCTCAATTCGATCAGCACTTGATTGTCCACTCAATTATGCAAGAAGCTATTTGGCAAATCTAATTCCATTATGTGTAAGAAAAGTTGTGTACTTGGATTCAGACCTTATCTTAGTTGATGATATCGCAAAACTTGCATCAACACCATTAGCCGAAAAAAATGCAGTTTTGGCAGCACCGGAGTATTGCAATGCAAATTTCACATTTTACTTCACACCAACATTTTGGTCCAACCCATCTTTGTCTTTAACATTCGCGAATCGAAAACCTTGTTACTTTAATACCGGGGTTATGGTAATTGATCTAGAAAAATGGCGCGACGGTGATTACACAACAAAGATTGAGGAATGGATGGAATTACAAAAGAGGATGAGAATCTATGAACTTGGTTCATTGCCACCTTTTTTGCTTGTTTTTGCAGGGGAAATTGTTCCTGTGGATCATAGATGGAATCAACATGGTCTTGGTGGTGATAATTTTCGAGGTCTTTGTCGAGATCTTCATCCAGGTCCAGTGAGTTTATTGCATTGGAGTGGAAAAGGTAAACCATGGGTGAGATTGGATGCTAATAGACCTTGTCCTTTGGATGCTCTTTGGGCACCTTATGATCTTTTGCAGACACCATTTTCTCTTGATTCTTGA

Protein sequence

>Msa0050950

MKINFPKPKLLFFFLILSLLCLQSLSSSNTKKNASKTRKTIINDQFKEAPQFYNSPNCASISEPEEDTEQDTDTYICSEEAVHVAMTLDTTYIRGSMAAILSVLQHSSCPQNIIFHFVCSSNTSLLHSIISKSFPYLKFQVYNFDDSIVSGLISTSIRSALDCPLNYARSYLANLIPLCVRKVVYLDSDLILVDDIAKLASTPLAEKNAVLAAPEYCNANFTFYFTPTFWSNPSLSLTFANRKPCYFNTGVMVIDLEKWRDGDYTTKIEEWMELQKRMRIYELGSLPPFLLVFAGEIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLQTPFSLDS*