Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050950 | XP_013466045.1 | 97.548 | 367 | 9 | 0 | 1 | 367 | 1 | 367 | 0.0 | 743 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050950 | sp|Q9S7G2|GATL2_ARATH | 68.539 | 356 | 87 | 6 | 13 | 365 | 5 | 338 | 2.42e-177 | 499 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050950 | A0A072VDI5 | 97.548 | 367 | 9 | 0 | 1 | 367 | 1 | 367 | 0.0 | 743 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0050950 | Msa0101340 | 0.902620 | 8.046634e-79 | -8.615850e-47 |
Msa0050950 | Msa0145680 | 0.909264 | 6.904563e-82 | -8.615850e-47 |
Msa0050950 | Msa0511780 | 0.814027 | 1.898445e-51 | -8.615850e-47 |
Msa0050950 | Msa0679230 | 0.829841 | 4.107235e-55 | -8.615850e-47 |
Msa0050950 | Msa0783850 | 0.803762 | 2.985941e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050950 | MtrunA17_Chr1g0154521 | 97.548 | 367 | 9 | 0 | 1 | 367 | 1 | 367 | 0.0 | 743 |
Msa0050950 | MtrunA17_Chr3g0141321 | 80.793 | 328 | 50 | 3 | 40 | 367 | 26 | 340 | 0.0 | 548 |
Msa0050950 | MtrunA17_Chr5g0403501 | 76.205 | 332 | 68 | 3 | 46 | 367 | 37 | 367 | 0.0 | 531 |
Msa0050950 | MtrunA17_Chr8g0373671 | 72.948 | 329 | 80 | 3 | 40 | 366 | 23 | 344 | 0.0 | 512 |
Msa0050950 | MtrunA17_Chr3g0127611 | 62.145 | 317 | 101 | 4 | 46 | 360 | 34 | 333 | 8.79e-147 | 418 |
Msa0050950 | MtrunA17_Chr6g0451981 | 55.432 | 359 | 141 | 6 | 10 | 358 | 10 | 359 | 8.12e-141 | 404 |
Msa0050950 | MtrunA17_Chr7g0259321 | 59.048 | 315 | 108 | 2 | 46 | 360 | 51 | 344 | 7.14e-139 | 399 |
Msa0050950 | MtrunA17_Chr7g0269751 | 54.775 | 356 | 137 | 6 | 12 | 358 | 10 | 350 | 1.33e-137 | 396 |
Msa0050950 | MtrunA17_Chr5g0414981 | 54.885 | 348 | 138 | 5 | 20 | 360 | 39 | 374 | 4.50e-136 | 395 |
Msa0050950 | MtrunA17_Chr4g0066331 | 58.675 | 317 | 112 | 4 | 46 | 361 | 42 | 340 | 1.16e-135 | 390 |
Msa0050950 | MtrunA17_Chr1g0196511 | 58.466 | 313 | 109 | 2 | 46 | 358 | 54 | 345 | 5.35e-133 | 384 |
Msa0050950 | MtrunA17_Chr2g0308241 | 32.642 | 193 | 118 | 6 | 165 | 356 | 340 | 521 | 3.13e-21 | 95.1 |
Msa0050950 | MtrunA17_Chr4g0061711 | 33.161 | 193 | 117 | 6 | 165 | 356 | 340 | 521 | 2.48e-20 | 92.4 |
Msa0050950 | MtrunA17_Chr3g0138381 | 27.843 | 255 | 171 | 8 | 111 | 363 | 414 | 657 | 3.67e-19 | 89.0 |
Msa0050950 | MtrunA17_Chr2g0283461 | 31.351 | 185 | 119 | 5 | 165 | 349 | 339 | 515 | 5.81e-18 | 85.1 |
Msa0050950 | MtrunA17_Chr2g0319311 | 30.151 | 199 | 122 | 8 | 165 | 356 | 338 | 526 | 6.23e-18 | 85.1 |
Msa0050950 | MtrunA17_Chr8g0383241 | 29.444 | 180 | 114 | 5 | 165 | 341 | 295 | 464 | 1.12e-17 | 84.3 |
Msa0050950 | MtrunA17_Chr7g0235161 | 29.167 | 192 | 126 | 6 | 165 | 356 | 364 | 545 | 2.17e-16 | 80.5 |
Msa0050950 | MtrunA17_Chr2g0290961 | 29.444 | 180 | 114 | 5 | 165 | 341 | 471 | 640 | 3.13e-16 | 80.1 |
Msa0050950 | MtrunA17_Chr7g0218571 | 27.638 | 199 | 127 | 7 | 165 | 356 | 334 | 522 | 4.19e-16 | 79.7 |
Msa0050950 | MtrunA17_Chr7g0246371 | 27.136 | 199 | 135 | 5 | 165 | 363 | 468 | 656 | 5.71e-16 | 79.3 |
Msa0050950 | MtrunA17_Chr8g0351091 | 28.249 | 177 | 116 | 5 | 165 | 339 | 416 | 583 | 7.57e-16 | 79.0 |
Msa0050950 | MtrunA17_Chr6g0456071 | 28.646 | 192 | 127 | 6 | 165 | 356 | 359 | 540 | 1.13e-14 | 75.5 |
Msa0050950 | MtrunA17_Chr3g0097091 | 21.835 | 316 | 188 | 10 | 86 | 356 | 214 | 515 | 1.42e-14 | 75.1 |
Msa0050950 | MtrunA17_Chr7g0260711 | 27.957 | 186 | 124 | 7 | 163 | 345 | 453 | 631 | 2.86e-13 | 71.2 |
Msa0050950 | MtrunA17_Chr6g0454101 | 28.947 | 114 | 73 | 3 | 245 | 356 | 410 | 517 | 1.53e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050950 | AT3G50760.1 | 68.539 | 356 | 87 | 6 | 13 | 365 | 5 | 338 | 2.46e-178 | 499 |
Msa0050950 | AT1G19300.1 | 76.061 | 330 | 76 | 2 | 40 | 367 | 23 | 351 | 5.35e-176 | 493 |
Msa0050950 | AT4G02130.3 | 60.759 | 316 | 110 | 3 | 46 | 360 | 41 | 343 | 3.35e-145 | 415 |
Msa0050950 | AT4G02130.1 | 60.759 | 316 | 110 | 3 | 46 | 360 | 41 | 343 | 3.35e-145 | 415 |
Msa0050950 | AT4G02130.2 | 60.759 | 316 | 110 | 3 | 46 | 360 | 41 | 343 | 3.35e-145 | 415 |
Msa0050950 | AT3G62660.1 | 67.138 | 283 | 89 | 2 | 76 | 358 | 77 | 355 | 2.75e-142 | 408 |
Msa0050950 | AT1G02720.1 | 56.213 | 338 | 136 | 3 | 24 | 360 | 32 | 358 | 2.53e-139 | 400 |
Msa0050950 | AT1G02720.2 | 56.213 | 338 | 136 | 3 | 24 | 360 | 32 | 358 | 2.53e-139 | 400 |
Msa0050950 | AT1G70090.1 | 52.575 | 369 | 160 | 5 | 1 | 360 | 1 | 363 | 1.25e-138 | 400 |
Msa0050950 | AT1G70090.2 | 52.575 | 369 | 160 | 5 | 1 | 360 | 1 | 363 | 1.25e-138 | 400 |
Msa0050950 | AT3G06260.1 | 58.044 | 317 | 114 | 4 | 46 | 361 | 46 | 344 | 1.44e-137 | 395 |
Msa0050950 | AT1G13250.1 | 59.877 | 324 | 119 | 4 | 46 | 367 | 31 | 345 | 5.91e-137 | 394 |
Msa0050950 | AT1G24170.1 | 57.994 | 319 | 128 | 3 | 46 | 360 | 50 | 366 | 2.21e-136 | 394 |
Msa0050950 | AT3G28340.1 | 57.595 | 316 | 124 | 4 | 48 | 361 | 44 | 351 | 1.04e-135 | 392 |
Msa0050950 | AT1G18580.1 | 32.258 | 186 | 117 | 5 | 165 | 349 | 342 | 519 | 7.04e-21 | 94.4 |
Msa0050950 | AT5G47780.1 | 31.667 | 180 | 110 | 5 | 165 | 341 | 420 | 589 | 1.18e-19 | 90.9 |
Msa0050950 | AT5G54690.1 | 30.151 | 199 | 122 | 8 | 165 | 356 | 331 | 519 | 7.23e-19 | 88.6 |
Msa0050950 | AT3G61130.1 | 30.198 | 202 | 125 | 7 | 165 | 363 | 477 | 665 | 8.96e-18 | 85.5 |
Msa0050950 | AT4G38270.2 | 27.869 | 244 | 167 | 6 | 115 | 357 | 430 | 665 | 1.73e-17 | 84.3 |
Msa0050950 | AT4G38270.1 | 27.869 | 244 | 167 | 6 | 115 | 357 | 434 | 669 | 1.92e-17 | 84.3 |
Msa0050950 | AT3G25140.1 | 29.000 | 200 | 123 | 5 | 165 | 358 | 363 | 549 | 6.35e-17 | 82.4 |
Msa0050950 | AT3G01040.1 | 25.287 | 261 | 172 | 9 | 110 | 356 | 233 | 484 | 8.70e-17 | 82.0 |
Msa0050950 | AT2G30575.1 | 27.715 | 267 | 166 | 12 | 95 | 345 | 332 | 587 | 9.87e-17 | 82.0 |
Msa0050950 | AT3G01040.2 | 27.778 | 198 | 128 | 7 | 165 | 356 | 329 | 517 | 1.69e-16 | 81.3 |
Msa0050950 | AT3G01040.3 | 27.778 | 198 | 128 | 7 | 165 | 356 | 329 | 517 | 1.69e-16 | 81.3 |
Msa0050950 | AT3G58790.1 | 30.000 | 200 | 122 | 8 | 165 | 356 | 336 | 525 | 1.89e-16 | 81.3 |
Msa0050950 | AT3G58790.2 | 30.000 | 200 | 122 | 8 | 165 | 356 | 204 | 393 | 1.90e-16 | 80.5 |
Msa0050950 | AT1G06780.2 | 27.586 | 261 | 162 | 9 | 95 | 339 | 324 | 573 | 1.95e-16 | 81.3 |
Msa0050950 | AT1G06780.1 | 27.586 | 261 | 162 | 9 | 95 | 339 | 311 | 560 | 2.00e-16 | 81.3 |
Msa0050950 | AT5G15470.1 | 26.768 | 198 | 130 | 7 | 165 | 356 | 329 | 517 | 5.88e-15 | 76.6 |
Msa0050950 | AT2G46480.4 | 24.042 | 287 | 181 | 9 | 78 | 363 | 295 | 545 | 1.04e-14 | 75.9 |
Msa0050950 | AT2G46480.3 | 24.042 | 287 | 181 | 9 | 78 | 363 | 282 | 532 | 1.04e-14 | 75.9 |
Msa0050950 | AT2G20810.1 | 32.663 | 199 | 123 | 7 | 165 | 363 | 342 | 529 | 4.50e-13 | 70.9 |
Msa0050950 | AT3G02350.1 | 29.167 | 192 | 126 | 6 | 165 | 356 | 365 | 546 | 6.66e-12 | 67.4 |
Msa0050950 | AT2G46480.2 | 22.300 | 287 | 161 | 10 | 78 | 363 | 282 | 507 | 4.23e-11 | 64.7 |
Msa0050950 | AT2G46480.1 | 22.300 | 287 | 161 | 10 | 78 | 363 | 295 | 520 | 5.39e-11 | 64.3 |
Find 74 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGTCCTTTGGATGCTCTT+TGG | 0.179612 | 1_2:+4986708 | Msa0050950:CDS |
TTGTCCTTTGGATGCTCTTT+GGG | 0.232558 | 1_2:+4986709 | Msa0050950:CDS |
TCCTGTTCGGTGTCTTCTTC+TGG | 0.234993 | 1_2:-4985861 | None:intergenic |
TTCGATGATTCAATCGTTTC+GGG | 0.244627 | 1_2:+4986101 | Msa0050950:CDS |
CAATTATGCAAGAAGCTATT+TGG | 0.253341 | 1_2:+4986166 | Msa0050950:CDS |
TTTACTTCACACCAACATTT+TGG | 0.256817 | 1_2:+4986339 | Msa0050950:CDS |
AATCAAGAATCAAGAGAAAA+TGG | 0.308067 | 1_2:-4986755 | None:intergenic |
TTACTTTAATACCGGGGTTA+TGG | 0.328231 | 1_2:+4986406 | Msa0050950:CDS |
TTTCGATGATTCAATCGTTT+CGG | 0.340870 | 1_2:+4986100 | Msa0050950:CDS |
TGCTAATAGACCTTGTCCTT+TGG | 0.372206 | 1_2:+4986697 | Msa0050950:CDS |
AAACCTTGTTACTTTAATAC+CGG | 0.397438 | 1_2:+4986398 | Msa0050950:CDS |
TCACTGATGGAGGCACAATT+TGG | 0.401749 | 1_2:-4985837 | None:intergenic |
GTCTTCTTCTGGTTCACTGA+TGG | 0.403834 | 1_2:-4985850 | None:intergenic |
TTGTTCCTGTGGATCATAGA+TGG | 0.412121 | 1_2:+4986561 | Msa0050950:CDS |
GTCCAGTGAGTTTATTGCAT+TGG | 0.440935 | 1_2:+4986642 | Msa0050950:CDS |
TGCAATAAACTCACTGGACC+TGG | 0.441630 | 1_2:-4986638 | None:intergenic |
TGCCACATGGACTGCTTCCT+CGG | 0.445747 | 1_2:-4985904 | None:intergenic |
AATTGTAGACTTGGAATTTG+AGG | 0.447752 | 1_2:-4986079 | None:intergenic |
AGGTAAACCATGGGTGAGAT+TGG | 0.454495 | 1_2:+4986673 | Msa0050950:CDS |
GCGAATGTTAAAGACAAAGA+TGG | 0.456493 | 1_2:-4986368 | None:intergenic |
TTATTGCATTGGAGTGGAAA+AGG | 0.458081 | 1_2:+4986653 | Msa0050950:CDS |
TGTAAGAAAAGTTGTGTACT+TGG | 0.460356 | 1_2:+4986208 | Msa0050950:CDS |
ACCAGAAGAAGACACCGAAC+AGG | 0.463727 | 1_2:+4985860 | Msa0050950:CDS |
TTTGGTGAGTTGTAGAATTG+AGG | 0.465286 | 1_2:-4985819 | None:intergenic |
GACAGAGAGGATTGCAGCCA+TGG | 0.467068 | 1_2:-4985958 | None:intergenic |
GGTGTCTGCAAAAGATCATA+AGG | 0.476961 | 1_2:-4986734 | None:intergenic |
AGATGGAATCAACATGGTCT+TGG | 0.481062 | 1_2:+4986578 | Msa0050950:CDS |
TTGGTGAGTTGTAGAATTGA+GGG | 0.481706 | 1_2:-4985818 | None:intergenic |
TGCAGGGGAAATTGTTCCTG+TGG | 0.488544 | 1_2:+4986550 | Msa0050950:CDS |
TTCTTCTGGTTCACTGATGG+AGG | 0.490980 | 1_2:-4985847 | None:intergenic |
AATCATCGAAATTGTAGACT+TGG | 0.491592 | 1_2:-4986088 | None:intergenic |
TAGACTTGGAATTTGAGGTA+AGG | 0.496272 | 1_2:-4986074 | None:intergenic |
AACCTTGTTACTTTAATACC+GGG | 0.498666 | 1_2:+4986399 | Msa0050950:CDS |
CTTTGTCGAGATCTTCATCC+AGG | 0.499442 | 1_2:+4986620 | Msa0050950:CDS |
AGACTTGGAATTTGAGGTAA+GGG | 0.499769 | 1_2:-4986073 | None:intergenic |
AACATATATCCGAGGTTCCA+TGG | 0.527756 | 1_2:+4985941 | Msa0050950:CDS |
AACAAAGATTGAGGAATGGA+TGG | 0.528450 | 1_2:+4986466 | Msa0050950:CDS |
CGATATCATCAACTAAGATA+AGG | 0.533837 | 1_2:-4986238 | None:intergenic |
CGAATGTTAAAGACAAAGAT+GGG | 0.534888 | 1_2:-4986367 | None:intergenic |
TGTTAAAGACAAAGATGGGT+TGG | 0.537673 | 1_2:-4986363 | None:intergenic |
CTCCAATGCAATAAACTCAC+TGG | 0.539210 | 1_2:-4986644 | None:intergenic |
ATGAAGAAGTGAAGTGTTTG+AGG | 0.542144 | 1_2:-4986030 | None:intergenic |
AGGATGAGAATCTATGAACT+TGG | 0.551100 | 1_2:+4986500 | Msa0050950:CDS |
TTTGTGGACATGATGAGTGT+TGG | 0.558842 | 1_2:-4985983 | None:intergenic |
GTGAGTTTATTGCATTGGAG+TGG | 0.561039 | 1_2:+4986647 | Msa0050950:CDS |
ATCAAGTGCTGATCGAATTG+AGG | 0.561859 | 1_2:-4986135 | None:intergenic |
GTGGACATGATGAGTGTTGG+AGG | 0.566977 | 1_2:-4985980 | None:intergenic |
AATGGATGGAATTACAAAAG+AGG | 0.570341 | 1_2:+4986480 | Msa0050950:CDS |
TGATTCCATCTATGATCCAC+AGG | 0.576078 | 1_2:-4986566 | None:intergenic |
TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 1_2:+4986581 | Msa0050950:CDS |
TTAGCATCCAATCTCACCCA+TGG | 0.582810 | 1_2:-4986680 | None:intergenic |
TGGTGAGTTGTAGAATTGAG+GGG | 0.584816 | 1_2:-4985817 | None:intergenic |
TAGCTTCTTGCATAATTGAG+TGG | 0.588805 | 1_2:-4986161 | None:intergenic |
ATATGTGTCAGTGTCCTGTT+CGG | 0.588856 | 1_2:-4985874 | None:intergenic |
TGATTACACAACAAAGATTG+AGG | 0.596745 | 1_2:+4986457 | Msa0050950:CDS |
CAAAGAGCATCCAAAGGACA+AGG | 0.605477 | 1_2:-4986707 | None:intergenic |
GGATTGCAGCCATGGAACCT+CGG | 0.623683 | 1_2:-4985950 | None:intergenic |
TAGAGATTGAAGACACAAGA+GGG | 0.627737 | 1_2:-4985724 | None:intergenic |
ACCCCGGTATTAAAGTAACA+AGG | 0.631984 | 1_2:-4986401 | None:intergenic |
AAATTTGCATTGCAATACTC+CGG | 0.633009 | 1_2:-4986311 | None:intergenic |
ATGAGTGTTGGAGGACAGAG+AGG | 0.637026 | 1_2:-4985971 | None:intergenic |
GGAGTGGAAAAGGTAAACCA+TGG | 0.642822 | 1_2:+4986663 | Msa0050950:CDS |
TAGATCAATTACCATAACCC+CGG | 0.646191 | 1_2:-4986417 | None:intergenic |
GATGGGTTGGACCAAAATGT+TGG | 0.647131 | 1_2:-4986350 | None:intergenic |
ACACAACAAAGATTGAGGAA+TGG | 0.651197 | 1_2:+4986462 | Msa0050950:CDS |
TGTCTAATGTCATTGCCACA+TGG | 0.655175 | 1_2:-4985917 | None:intergenic |
ATAGAGATTGAAGACACAAG+AGG | 0.656250 | 1_2:-4985725 | None:intergenic |
GAGTGGAAAAGGTAAACCAT+GGG | 0.662161 | 1_2:+4986664 | Msa0050950:CDS |
ACCTTGTTACTTTAATACCG+GGG | 0.664037 | 1_2:+4986400 | Msa0050950:CDS |
CTCCGAGGAAGCAGTCCATG+TGG | 0.686524 | 1_2:+4985902 | Msa0050950:CDS |
GGTGCCCAAAGAGCATCCAA+AGG | 0.694592 | 1_2:-4986713 | None:intergenic |
GATCATAGATGGAATCAACA+TGG | 0.708687 | 1_2:+4986572 | Msa0050950:CDS |
TTAGACACAACATATATCCG+AGG | 0.716181 | 1_2:+4985933 | Msa0050950:CDS |
TGACACATATATCTGCTCCG+AGG | 0.786200 | 1_2:+4985887 | Msa0050950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAATAAGAGTTTTGGTTT+TGG | - | chr1_2:4985690-4985709 | None:intergenic | 20.0% |
!!! | AGAAAGAAAAATAAGAGTTT+TGG | - | chr1_2:4985696-4985715 | None:intergenic | 20.0% |
!!! | AATTGTTTTTCTTGTTTTTG+AGG | - | chr1_2:4985775-4985794 | None:intergenic | 20.0% |
!!! | AAAAATAAGAGTTTTGGTTT+TGG | - | chr1_2:4985690-4985709 | None:intergenic | 20.0% |
!!! | AGAAAGAAAAATAAGAGTTT+TGG | - | chr1_2:4985696-4985715 | None:intergenic | 20.0% |
!!! | AATTGTTTTTCTTGTTTTTG+AGG | - | chr1_2:4985775-4985794 | None:intergenic | 20.0% |
!!! | TGTTTTTGAGGCATTTTTTT+TGG | - | chr1_2:4985763-4985782 | None:intergenic | 25.0% |
!! | ACAACTTTTCTTACACATAA+TGG | - | chr1_2:4986203-4986222 | None:intergenic | 25.0% |
!!! | AAACCTTGTTACTTTAATAC+CGG | + | chr1_2:4986398-4986417 | Msa0050950:CDS | 25.0% |
! | TGGTAATTGATCTAGAAAAA+TGG | + | chr1_2:4986426-4986445 | Msa0050950:CDS | 25.0% |
!!! | TGTTTTTGAGGCATTTTTTT+TGG | - | chr1_2:4985763-4985782 | None:intergenic | 25.0% |
!! | ACAACTTTTCTTACACATAA+TGG | - | chr1_2:4986203-4986222 | None:intergenic | 25.0% |
!!! | AAACCTTGTTACTTTAATAC+CGG | + | chr1_2:4986398-4986417 | Msa0050950:CDS | 25.0% |
! | TGGTAATTGATCTAGAAAAA+TGG | + | chr1_2:4986426-4986445 | Msa0050950:CDS | 25.0% |
! | AAGTGAAAGATGATGTTTTG+TGG | - | chr1_2:4986002-4986021 | None:intergenic | 30.0% |
!!! | AGGGAATGATTTTGAGATTA+TGG | - | chr1_2:4986057-4986076 | None:intergenic | 30.0% |
AATTGTAGACTTGGAATTTG+AGG | - | chr1_2:4986082-4986101 | None:intergenic | 30.0% | |
AATCATCGAAATTGTAGACT+TGG | - | chr1_2:4986091-4986110 | None:intergenic | 30.0% | |
TTTCGATGATTCAATCGTTT+CGG | + | chr1_2:4986100-4986119 | Msa0050950:CDS | 30.0% | |
CAATTATGCAAGAAGCTATT+TGG | + | chr1_2:4986166-4986185 | Msa0050950:CDS | 30.0% | |
TGTAAGAAAAGTTGTGTACT+TGG | + | chr1_2:4986208-4986227 | Msa0050950:CDS | 30.0% | |
CGATATCATCAACTAAGATA+AGG | - | chr1_2:4986241-4986260 | None:intergenic | 30.0% | |
!!! | TGCCAAAACTGCATTTTTTT+CGG | - | chr1_2:4986288-4986307 | None:intergenic | 30.0% |
AAATTTGCATTGCAATACTC+CGG | - | chr1_2:4986314-4986333 | None:intergenic | 30.0% | |
! | TTTACTTCACACCAACATTT+TGG | + | chr1_2:4986339-4986358 | Msa0050950:CDS | 30.0% |
CGAATGTTAAAGACAAAGAT+GGG | - | chr1_2:4986370-4986389 | None:intergenic | 30.0% | |
!! | AACCTTGTTACTTTAATACC+GGG | + | chr1_2:4986399-4986418 | Msa0050950:CDS | 30.0% |
TGATTACACAACAAAGATTG+AGG | + | chr1_2:4986457-4986476 | Msa0050950:CDS | 30.0% | |
AATGGATGGAATTACAAAAG+AGG | + | chr1_2:4986480-4986499 | Msa0050950:CDS | 30.0% | |
!!! | CTTTTTTGCTTGTTTTTGCA+GGG | + | chr1_2:4986534-4986553 | Msa0050950:CDS | 30.0% |
!!! | TTTTTTGCTTGTTTTTGCAG+GGG | + | chr1_2:4986535-4986554 | Msa0050950:CDS | 30.0% |
! | AAGTGAAAGATGATGTTTTG+TGG | - | chr1_2:4986002-4986021 | None:intergenic | 30.0% |
!!! | AGGGAATGATTTTGAGATTA+TGG | - | chr1_2:4986057-4986076 | None:intergenic | 30.0% |
AATTGTAGACTTGGAATTTG+AGG | - | chr1_2:4986082-4986101 | None:intergenic | 30.0% | |
AATCATCGAAATTGTAGACT+TGG | - | chr1_2:4986091-4986110 | None:intergenic | 30.0% | |
TTTCGATGATTCAATCGTTT+CGG | + | chr1_2:4986100-4986119 | Msa0050950:CDS | 30.0% | |
CAATTATGCAAGAAGCTATT+TGG | + | chr1_2:4986166-4986185 | Msa0050950:CDS | 30.0% | |
TGTAAGAAAAGTTGTGTACT+TGG | + | chr1_2:4986208-4986227 | Msa0050950:CDS | 30.0% | |
CGATATCATCAACTAAGATA+AGG | - | chr1_2:4986241-4986260 | None:intergenic | 30.0% | |
!!! | TGCCAAAACTGCATTTTTTT+CGG | - | chr1_2:4986288-4986307 | None:intergenic | 30.0% |
AAATTTGCATTGCAATACTC+CGG | - | chr1_2:4986314-4986333 | None:intergenic | 30.0% | |
! | TTTACTTCACACCAACATTT+TGG | + | chr1_2:4986339-4986358 | Msa0050950:CDS | 30.0% |
CGAATGTTAAAGACAAAGAT+GGG | - | chr1_2:4986370-4986389 | None:intergenic | 30.0% | |
!! | AACCTTGTTACTTTAATACC+GGG | + | chr1_2:4986399-4986418 | Msa0050950:CDS | 30.0% |
TGATTACACAACAAAGATTG+AGG | + | chr1_2:4986457-4986476 | Msa0050950:CDS | 30.0% | |
AATGGATGGAATTACAAAAG+AGG | + | chr1_2:4986480-4986499 | Msa0050950:CDS | 30.0% | |
!!! | CTTTTTTGCTTGTTTTTGCA+GGG | + | chr1_2:4986534-4986553 | Msa0050950:CDS | 30.0% |
!!! | TTTTTTGCTTGTTTTTGCAG+GGG | + | chr1_2:4986535-4986554 | Msa0050950:CDS | 30.0% |
TAGAGATTGAAGACACAAGA+GGG | - | chr1_2:4985727-4985746 | None:intergenic | 35.0% | |
ATAGAGATTGAAGACACAAG+AGG | - | chr1_2:4985728-4985747 | None:intergenic | 35.0% | |
!!! | TGAGGCATTTTTTTTGGTGT+TGG | - | chr1_2:4985757-4985776 | None:intergenic | 35.0% |
TTGGTGAGTTGTAGAATTGA+GGG | - | chr1_2:4985821-4985840 | None:intergenic | 35.0% | |
TTTGGTGAGTTGTAGAATTG+AGG | - | chr1_2:4985822-4985841 | None:intergenic | 35.0% | |
TTAGACACAACATATATCCG+AGG | + | chr1_2:4985933-4985952 | Msa0050950:CDS | 35.0% | |
! | ATGAAGAAGTGAAGTGTTTG+AGG | - | chr1_2:4986033-4986052 | None:intergenic | 35.0% |
! | AGACTTGGAATTTGAGGTAA+GGG | - | chr1_2:4986076-4986095 | None:intergenic | 35.0% |
! | TAGACTTGGAATTTGAGGTA+AGG | - | chr1_2:4986077-4986096 | None:intergenic | 35.0% |
TTCGATGATTCAATCGTTTC+GGG | + | chr1_2:4986101-4986120 | Msa0050950:CDS | 35.0% | |
TAGCTTCTTGCATAATTGAG+TGG | - | chr1_2:4986164-4986183 | None:intergenic | 35.0% | |
!!! | ACTGCATTTTTTTCGGCTAA+TGG | - | chr1_2:4986281-4986300 | None:intergenic | 35.0% |
! | AGCCGAAAAAAATGCAGTTT+TGG | + | chr1_2:4986283-4986302 | Msa0050950:CDS | 35.0% |
TGTTAAAGACAAAGATGGGT+TGG | - | chr1_2:4986366-4986385 | None:intergenic | 35.0% | |
GCGAATGTTAAAGACAAAGA+TGG | - | chr1_2:4986371-4986390 | None:intergenic | 35.0% | |
!! | ACCTTGTTACTTTAATACCG+GGG | + | chr1_2:4986400-4986419 | Msa0050950:CDS | 35.0% |
TTACTTTAATACCGGGGTTA+TGG | + | chr1_2:4986406-4986425 | Msa0050950:CDS | 35.0% | |
TAGATCAATTACCATAACCC+CGG | - | chr1_2:4986420-4986439 | None:intergenic | 35.0% | |
ACACAACAAAGATTGAGGAA+TGG | + | chr1_2:4986462-4986481 | Msa0050950:CDS | 35.0% | |
AACAAAGATTGAGGAATGGA+TGG | + | chr1_2:4986466-4986485 | Msa0050950:CDS | 35.0% | |
AGGATGAGAATCTATGAACT+TGG | + | chr1_2:4986500-4986519 | Msa0050950:CDS | 35.0% | |
GCAAAAACAAGCAAAAAAGG+TGG | - | chr1_2:4986533-4986552 | None:intergenic | 35.0% | |
CCTGCAAAAACAAGCAAAAA+AGG | - | chr1_2:4986536-4986555 | None:intergenic | 35.0% | |
!!! | CCTTTTTTGCTTGTTTTTGC+AGG | + | chr1_2:4986533-4986552 | Msa0050950:CDS | 35.0% |
GATCATAGATGGAATCAACA+TGG | + | chr1_2:4986572-4986591 | Msa0050950:CDS | 35.0% | |
TTATTGCATTGGAGTGGAAA+AGG | + | chr1_2:4986653-4986672 | Msa0050950:CDS | 35.0% | |
TAGAGATTGAAGACACAAGA+GGG | - | chr1_2:4985727-4985746 | None:intergenic | 35.0% | |
ATAGAGATTGAAGACACAAG+AGG | - | chr1_2:4985728-4985747 | None:intergenic | 35.0% | |
!!! | TGAGGCATTTTTTTTGGTGT+TGG | - | chr1_2:4985757-4985776 | None:intergenic | 35.0% |
TTGGTGAGTTGTAGAATTGA+GGG | - | chr1_2:4985821-4985840 | None:intergenic | 35.0% | |
TTTGGTGAGTTGTAGAATTG+AGG | - | chr1_2:4985822-4985841 | None:intergenic | 35.0% | |
TTAGACACAACATATATCCG+AGG | + | chr1_2:4985933-4985952 | Msa0050950:CDS | 35.0% | |
! | ATGAAGAAGTGAAGTGTTTG+AGG | - | chr1_2:4986033-4986052 | None:intergenic | 35.0% |
! | AGACTTGGAATTTGAGGTAA+GGG | - | chr1_2:4986076-4986095 | None:intergenic | 35.0% |
! | TAGACTTGGAATTTGAGGTA+AGG | - | chr1_2:4986077-4986096 | None:intergenic | 35.0% |
TTCGATGATTCAATCGTTTC+GGG | + | chr1_2:4986101-4986120 | Msa0050950:CDS | 35.0% | |
TAGCTTCTTGCATAATTGAG+TGG | - | chr1_2:4986164-4986183 | None:intergenic | 35.0% | |
!!! | ACTGCATTTTTTTCGGCTAA+TGG | - | chr1_2:4986281-4986300 | None:intergenic | 35.0% |
! | AGCCGAAAAAAATGCAGTTT+TGG | + | chr1_2:4986283-4986302 | Msa0050950:CDS | 35.0% |
TGTTAAAGACAAAGATGGGT+TGG | - | chr1_2:4986366-4986385 | None:intergenic | 35.0% | |
GCGAATGTTAAAGACAAAGA+TGG | - | chr1_2:4986371-4986390 | None:intergenic | 35.0% | |
!! | ACCTTGTTACTTTAATACCG+GGG | + | chr1_2:4986400-4986419 | Msa0050950:CDS | 35.0% |
TTACTTTAATACCGGGGTTA+TGG | + | chr1_2:4986406-4986425 | Msa0050950:CDS | 35.0% | |
TAGATCAATTACCATAACCC+CGG | - | chr1_2:4986420-4986439 | None:intergenic | 35.0% | |
ACACAACAAAGATTGAGGAA+TGG | + | chr1_2:4986462-4986481 | Msa0050950:CDS | 35.0% | |
AACAAAGATTGAGGAATGGA+TGG | + | chr1_2:4986466-4986485 | Msa0050950:CDS | 35.0% | |
AGGATGAGAATCTATGAACT+TGG | + | chr1_2:4986500-4986519 | Msa0050950:CDS | 35.0% | |
GCAAAAACAAGCAAAAAAGG+TGG | - | chr1_2:4986533-4986552 | None:intergenic | 35.0% | |
CCTGCAAAAACAAGCAAAAA+AGG | - | chr1_2:4986536-4986555 | None:intergenic | 35.0% | |
!!! | CCTTTTTTGCTTGTTTTTGC+AGG | + | chr1_2:4986533-4986552 | Msa0050950:CDS | 35.0% |
GATCATAGATGGAATCAACA+TGG | + | chr1_2:4986572-4986591 | Msa0050950:CDS | 35.0% | |
TTATTGCATTGGAGTGGAAA+AGG | + | chr1_2:4986653-4986672 | Msa0050950:CDS | 35.0% | |
!!! | GGCATTTTTTTTGGTGTTGG+AGG | - | chr1_2:4985754-4985773 | None:intergenic | 40.0% |
TGGTGAGTTGTAGAATTGAG+GGG | - | chr1_2:4985820-4985839 | None:intergenic | 40.0% | |
ATATGTGTCAGTGTCCTGTT+CGG | - | chr1_2:4985877-4985896 | None:intergenic | 40.0% | |
TGTCTAATGTCATTGCCACA+TGG | - | chr1_2:4985920-4985939 | None:intergenic | 40.0% | |
AACATATATCCGAGGTTCCA+TGG | + | chr1_2:4985941-4985960 | Msa0050950:CDS | 40.0% | |
TTTGTGGACATGATGAGTGT+TGG | - | chr1_2:4985986-4986005 | None:intergenic | 40.0% | |
!! | ATCAAGTGCTGATCGAATTG+AGG | - | chr1_2:4986138-4986157 | None:intergenic | 40.0% |
ACCCCGGTATTAAAGTAACA+AGG | - | chr1_2:4986404-4986423 | None:intergenic | 40.0% | |
TTGTTCCTGTGGATCATAGA+TGG | + | chr1_2:4986561-4986580 | Msa0050950:CDS | 40.0% | |
TGATTCCATCTATGATCCAC+AGG | - | chr1_2:4986569-4986588 | None:intergenic | 40.0% | |
AGATGGAATCAACATGGTCT+TGG | + | chr1_2:4986578-4986597 | Msa0050950:CDS | 40.0% | |
!!! | CTTGGTGGTGATAATTTTCG+AGG | + | chr1_2:4986596-4986615 | Msa0050950:CDS | 40.0% |
GTCCAGTGAGTTTATTGCAT+TGG | + | chr1_2:4986642-4986661 | Msa0050950:CDS | 40.0% | |
CTCCAATGCAATAAACTCAC+TGG | - | chr1_2:4986647-4986666 | None:intergenic | 40.0% | |
GTGAGTTTATTGCATTGGAG+TGG | + | chr1_2:4986647-4986666 | Msa0050950:CDS | 40.0% | |
GAGTGGAAAAGGTAAACCAT+GGG | + | chr1_2:4986664-4986683 | Msa0050950:CDS | 40.0% | |
TGCTAATAGACCTTGTCCTT+TGG | + | chr1_2:4986697-4986716 | Msa0050950:CDS | 40.0% | |
TTGTCCTTTGGATGCTCTTT+GGG | + | chr1_2:4986709-4986728 | Msa0050950:CDS | 40.0% | |
GGTGTCTGCAAAAGATCATA+AGG | - | chr1_2:4986737-4986756 | None:intergenic | 40.0% | |
!!! | GGCATTTTTTTTGGTGTTGG+AGG | - | chr1_2:4985754-4985773 | None:intergenic | 40.0% |
TGGTGAGTTGTAGAATTGAG+GGG | - | chr1_2:4985820-4985839 | None:intergenic | 40.0% | |
ATATGTGTCAGTGTCCTGTT+CGG | - | chr1_2:4985877-4985896 | None:intergenic | 40.0% | |
TGTCTAATGTCATTGCCACA+TGG | - | chr1_2:4985920-4985939 | None:intergenic | 40.0% | |
AACATATATCCGAGGTTCCA+TGG | + | chr1_2:4985941-4985960 | Msa0050950:CDS | 40.0% | |
TTTGTGGACATGATGAGTGT+TGG | - | chr1_2:4985986-4986005 | None:intergenic | 40.0% | |
!! | ATCAAGTGCTGATCGAATTG+AGG | - | chr1_2:4986138-4986157 | None:intergenic | 40.0% |
ACCCCGGTATTAAAGTAACA+AGG | - | chr1_2:4986404-4986423 | None:intergenic | 40.0% | |
TTGTTCCTGTGGATCATAGA+TGG | + | chr1_2:4986561-4986580 | Msa0050950:CDS | 40.0% | |
TGATTCCATCTATGATCCAC+AGG | - | chr1_2:4986569-4986588 | None:intergenic | 40.0% | |
AGATGGAATCAACATGGTCT+TGG | + | chr1_2:4986578-4986597 | Msa0050950:CDS | 40.0% | |
!!! | CTTGGTGGTGATAATTTTCG+AGG | + | chr1_2:4986596-4986615 | Msa0050950:CDS | 40.0% |
GTCCAGTGAGTTTATTGCAT+TGG | + | chr1_2:4986642-4986661 | Msa0050950:CDS | 40.0% | |
CTCCAATGCAATAAACTCAC+TGG | - | chr1_2:4986647-4986666 | None:intergenic | 40.0% | |
GTGAGTTTATTGCATTGGAG+TGG | + | chr1_2:4986647-4986666 | Msa0050950:CDS | 40.0% | |
GAGTGGAAAAGGTAAACCAT+GGG | + | chr1_2:4986664-4986683 | Msa0050950:CDS | 40.0% | |
TGCTAATAGACCTTGTCCTT+TGG | + | chr1_2:4986697-4986716 | Msa0050950:CDS | 40.0% | |
TTGTCCTTTGGATGCTCTTT+GGG | + | chr1_2:4986709-4986728 | Msa0050950:CDS | 40.0% | |
GGTGTCTGCAAAAGATCATA+AGG | - | chr1_2:4986737-4986756 | None:intergenic | 40.0% | |
! | TCACTGATGGAGGCACAATT+TGG | - | chr1_2:4985840-4985859 | None:intergenic | 45.0% |
!! | TTCTTCTGGTTCACTGATGG+AGG | - | chr1_2:4985850-4985869 | None:intergenic | 45.0% |
!! | GTCTTCTTCTGGTTCACTGA+TGG | - | chr1_2:4985853-4985872 | None:intergenic | 45.0% |
TGACACATATATCTGCTCCG+AGG | + | chr1_2:4985887-4985906 | Msa0050950:CDS | 45.0% | |
!! | AAATGCAGTTTTGGCAGCAC+CGG | + | chr1_2:4986292-4986311 | Msa0050950:CDS | 45.0% |
!! | GATGGGTTGGACCAAAATGT+TGG | - | chr1_2:4986353-4986372 | None:intergenic | 45.0% |
GATCTAGAAAAATGGCGCGA+CGG | + | chr1_2:4986434-4986453 | Msa0050950:CDS | 45.0% | |
! | TGGAATCAACATGGTCTTGG+TGG | + | chr1_2:4986581-4986600 | Msa0050950:CDS | 45.0% |
CTTTGTCGAGATCTTCATCC+AGG | + | chr1_2:4986620-4986639 | Msa0050950:CDS | 45.0% | |
TGCAATAAACTCACTGGACC+TGG | - | chr1_2:4986641-4986660 | None:intergenic | 45.0% | |
GGAGTGGAAAAGGTAAACCA+TGG | + | chr1_2:4986663-4986682 | Msa0050950:CDS | 45.0% | |
AGGTAAACCATGGGTGAGAT+TGG | + | chr1_2:4986673-4986692 | Msa0050950:CDS | 45.0% | |
TTAGCATCCAATCTCACCCA+TGG | - | chr1_2:4986683-4986702 | None:intergenic | 45.0% | |
!! | CAAAGAGCATCCAAAGGACA+AGG | - | chr1_2:4986710-4986729 | None:intergenic | 45.0% |
CTTGTCCTTTGGATGCTCTT+TGG | + | chr1_2:4986708-4986727 | Msa0050950:CDS | 45.0% | |
! | TCACTGATGGAGGCACAATT+TGG | - | chr1_2:4985840-4985859 | None:intergenic | 45.0% |
!! | TTCTTCTGGTTCACTGATGG+AGG | - | chr1_2:4985850-4985869 | None:intergenic | 45.0% |
!! | GTCTTCTTCTGGTTCACTGA+TGG | - | chr1_2:4985853-4985872 | None:intergenic | 45.0% |
TGACACATATATCTGCTCCG+AGG | + | chr1_2:4985887-4985906 | Msa0050950:CDS | 45.0% | |
!! | AAATGCAGTTTTGGCAGCAC+CGG | + | chr1_2:4986292-4986311 | Msa0050950:CDS | 45.0% |
!! | GATGGGTTGGACCAAAATGT+TGG | - | chr1_2:4986353-4986372 | None:intergenic | 45.0% |
GATCTAGAAAAATGGCGCGA+CGG | + | chr1_2:4986434-4986453 | Msa0050950:CDS | 45.0% | |
! | TGGAATCAACATGGTCTTGG+TGG | + | chr1_2:4986581-4986600 | Msa0050950:CDS | 45.0% |
CTTTGTCGAGATCTTCATCC+AGG | + | chr1_2:4986620-4986639 | Msa0050950:CDS | 45.0% | |
TGCAATAAACTCACTGGACC+TGG | - | chr1_2:4986641-4986660 | None:intergenic | 45.0% | |
GGAGTGGAAAAGGTAAACCA+TGG | + | chr1_2:4986663-4986682 | Msa0050950:CDS | 45.0% | |
AGGTAAACCATGGGTGAGAT+TGG | + | chr1_2:4986673-4986692 | Msa0050950:CDS | 45.0% | |
TTAGCATCCAATCTCACCCA+TGG | - | chr1_2:4986683-4986702 | None:intergenic | 45.0% | |
!! | CAAAGAGCATCCAAAGGACA+AGG | - | chr1_2:4986710-4986729 | None:intergenic | 45.0% |
CTTGTCCTTTGGATGCTCTT+TGG | + | chr1_2:4986708-4986727 | Msa0050950:CDS | 45.0% | |
ACCAGAAGAAGACACCGAAC+AGG | + | chr1_2:4985860-4985879 | Msa0050950:CDS | 50.0% | |
!! | TCCTGTTCGGTGTCTTCTTC+TGG | - | chr1_2:4985864-4985883 | None:intergenic | 50.0% |
!! | ATGAGTGTTGGAGGACAGAG+AGG | - | chr1_2:4985974-4985993 | None:intergenic | 50.0% |
!! | GTGGACATGATGAGTGTTGG+AGG | - | chr1_2:4985983-4986002 | None:intergenic | 50.0% |
TGCAGGGGAAATTGTTCCTG+TGG | + | chr1_2:4986550-4986569 | Msa0050950:CDS | 50.0% | |
ACCAGAAGAAGACACCGAAC+AGG | + | chr1_2:4985860-4985879 | Msa0050950:CDS | 50.0% | |
!! | TCCTGTTCGGTGTCTTCTTC+TGG | - | chr1_2:4985864-4985883 | None:intergenic | 50.0% |
!! | ATGAGTGTTGGAGGACAGAG+AGG | - | chr1_2:4985974-4985993 | None:intergenic | 50.0% |
!! | GTGGACATGATGAGTGTTGG+AGG | - | chr1_2:4985983-4986002 | None:intergenic | 50.0% |
TGCAGGGGAAATTGTTCCTG+TGG | + | chr1_2:4986550-4986569 | Msa0050950:CDS | 50.0% | |
! | TGCCACATGGACTGCTTCCT+CGG | - | chr1_2:4985907-4985926 | None:intergenic | 55.0% |
GGATTGCAGCCATGGAACCT+CGG | - | chr1_2:4985953-4985972 | None:intergenic | 55.0% | |
GACAGAGAGGATTGCAGCCA+TGG | - | chr1_2:4985961-4985980 | None:intergenic | 55.0% | |
!! | GGTGCCCAAAGAGCATCCAA+AGG | - | chr1_2:4986716-4986735 | None:intergenic | 55.0% |
! | TGCCACATGGACTGCTTCCT+CGG | - | chr1_2:4985907-4985926 | None:intergenic | 55.0% |
GGATTGCAGCCATGGAACCT+CGG | - | chr1_2:4985953-4985972 | None:intergenic | 55.0% | |
GACAGAGAGGATTGCAGCCA+TGG | - | chr1_2:4985961-4985980 | None:intergenic | 55.0% | |
!! | GGTGCCCAAAGAGCATCCAA+AGG | - | chr1_2:4986716-4986735 | None:intergenic | 55.0% |
CTCCGAGGAAGCAGTCCATG+TGG | + | chr1_2:4985902-4985921 | Msa0050950:CDS | 60.0% | |
CTCCGAGGAAGCAGTCCATG+TGG | + | chr1_2:4985902-4985921 | Msa0050950:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 4985672 | 4986775 | 4985672 | ID=Msa0050950;Name=Msa0050950 |
chr1_2 | mRNA | 4985672 | 4986775 | 4985672 | ID=Msa0050950-mRNA-1;Parent=Msa0050950;Name=Msa0050950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|367 |
chr1_2 | exon | 4985672 | 4986775 | 4985672 | ID=Msa0050950-mRNA-1:exon:1331;Parent=Msa0050950-mRNA-1 |
chr1_2 | CDS | 4985672 | 4986775 | 4985672 | ID=Msa0050950-mRNA-1:cds;Parent=Msa0050950-mRNA-1 |
Gene Sequence |
Protein sequence |