AlfalfaGEDB | Msa0145680

M. sativa cultivar zhongmu-4 / Msa0145680

KEGG: K20893
GO: GO:0000003 GO:0000271 GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010051 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0032502 GO:0032504 GO:0033692 GO:0034637 GO:0034645 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0052386 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0099402 GO:1901576
PFAM: PF01501.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145680	XP_013466045.1	97.820	367	8	0	1	367	1	367	0.0	745

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145680	sp\|Q9S7G2\|GATL2_ARATH	68.539	356	87	6	13	365	5	338	2.61e-177	498

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145680	A0A072VDI5	97.820	367	8	0	1	367	1	367	0.0	745

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036890	Msa0145680	0.867441	1.365968e-65	-8.615850e-47
Msa0050950	Msa0145680	0.909264	6.904563e-82	-8.615850e-47
Msa0084970	Msa0145680	0.877093	8.281938e-69	-8.615850e-47
Msa0101340	Msa0145680	0.993319	6.456056e-199	-8.615850e-47
Msa0130990	Msa0145680	0.837682	4.500246e-57	-8.615850e-47
Msa0145680	Msa0176900	0.854436	1.232874e-61	-8.615850e-47
Msa0145680	Msa0235710	0.801530	8.622506e-49	-8.615850e-47
Msa0145680	Msa0327670	0.804735	1.872856e-49	-8.615850e-47
Msa0145680	Msa0389500	0.829530	4.889325e-55	-8.615850e-47
Msa0145680	Msa0400420	0.801081	1.065182e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145680	MtrunA17_Chr1g0154521	97.820	367	8	0	1	367	1	367	0.0	745
Msa0145680	MtrunA17_Chr3g0141321	80.183	328	52	2	40	367	26	340	0.0	548
Msa0145680	MtrunA17_Chr5g0403501	76.205	332	68	3	46	367	37	367	0.0	530
Msa0145680	MtrunA17_Chr8g0373671	73.860	329	77	4	40	366	23	344	0.0	515
Msa0145680	MtrunA17_Chr3g0127611	62.145	317	101	4	46	360	34	333	1.47e-146	418
Msa0145680	MtrunA17_Chr6g0451981	55.432	359	141	6	10	358	10	359	1.63e-140	404
Msa0145680	MtrunA17_Chr7g0259321	59.048	315	108	2	46	360	51	344	1.29e-138	398
Msa0145680	MtrunA17_Chr7g0269751	54.775	356	137	6	12	358	10	350	1.41e-137	395
Msa0145680	MtrunA17_Chr5g0414981	55.072	345	142	5	20	360	39	374	8.29e-136	394
Msa0145680	MtrunA17_Chr4g0066331	58.675	317	112	4	46	361	42	340	2.52e-135	389

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145680	AT3G50760.1	68.539	356	87	6	13	365	5	338	2.65e-178	498
Msa0145680	AT1G19300.1	76.061	330	76	2	40	367	23	351	1.14e-175	492
Msa0145680	AT4G02130.3	60.759	316	110	3	46	360	41	343	5.84e-145	414
Msa0145680	AT4G02130.1	60.759	316	110	3	46	360	41	343	5.84e-145	414
Msa0145680	AT4G02130.2	60.759	316	110	3	46	360	41	343	5.84e-145	414
Msa0145680	AT3G62660.1	67.138	283	89	2	76	358	77	355	4.35e-142	407
Msa0145680	AT1G02720.1	56.213	338	136	3	24	360	32	358	2.15e-139	400
Msa0145680	AT1G02720.2	56.213	338	136	3	24	360	32	358	2.15e-139	400
Msa0145680	AT1G70090.1	52.575	369	160	5	1	360	1	363	1.82e-138	399
Msa0145680	AT1G70090.2	52.575	369	160	5	1	360	1	363	1.82e-138	399

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Find 72 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTTACTTTAATAC+CGG	0.397438	1_4:+5384858	Msa0145680:CDS
AAATTTGCATTGCAATACTC+CGG	0.633009	1_4:-5384771	None:intergenic
AACAAAGATTGAGGAATGGA+TGG	0.528450	1_4:+5384926	Msa0145680:CDS
AACATATATCCGAGGTTCCA+TGG	0.527756	1_4:+5384401	Msa0145680:CDS
AACCTTGTTACTTTAATACC+GGG	0.498666	1_4:+5384859	Msa0145680:CDS
AATCAAGAATCAAGAGAAAA+TGG	0.308067	1_4:-5385215	None:intergenic
AATCATCGAAATTGTAGACT+TGG	0.491592	1_4:-5384548	None:intergenic
AATGGATGGAATTACAAAAG+AGG	0.570341	1_4:+5384940	Msa0145680:CDS
AATTGTAGACTTGGAATTTG+AGG	0.447752	1_4:-5384539	None:intergenic
ACACAACAAAGATTGAGGAA+TGG	0.651197	1_4:+5384922	Msa0145680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTAGACTTGGAATTTG+AGG	-	chr1_4:5384542-5384561	None:intergenic	30.0%
AATCATCGAAATTGTAGACT+TGG	-	chr1_4:5384551-5384570	None:intergenic	30.0%
TTTCGATGATTCAATCGTTT+CGG	+	chr1_4:5384560-5384579	Msa0145680:CDS	30.0%
CAATTATGCAAGAAGCTATT+TGG	+	chr1_4:5384626-5384645	Msa0145680:CDS	30.0%
TGTAAGAAAAGTTGTGTACT+TGG	+	chr1_4:5384668-5384687	Msa0145680:CDS	30.0%
CGATATCATCAACTAAGATA+AGG	-	chr1_4:5384701-5384720	None:intergenic	30.0%
AAATTTGCATTGCAATACTC+CGG	-	chr1_4:5384774-5384793	None:intergenic	30.0%
CGAATGTTAAAGACAAAGAT+GGG	-	chr1_4:5384830-5384849	None:intergenic	30.0%
TGATTACACAACAAAGATTG+AGG	+	chr1_4:5384917-5384936	Msa0145680:CDS	30.0%
AATGGATGGAATTACAAAAG+AGG	+	chr1_4:5384940-5384959	Msa0145680:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	5384132	5385235	5384132	ID=Msa0145680;Name=Msa0145680
chr1_4	mRNA	5384132	5385235	5384132	ID=Msa0145680-mRNA-1;Parent=Msa0145680;Name=Msa0145680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|367
chr1_4	exon	5384132	5385235	5384132	ID=Msa0145680-mRNA-1:exon:2196;Parent=Msa0145680-mRNA-1
chr1_4	CDS	5384132	5385235	5384132	ID=Msa0145680-mRNA-1:cds;Parent=Msa0145680-mRNA-1

Gene Sequence

>Msa0145680

ATGAAGATCAATTTTCCAAAACCAAAACTCTTATTTTTCTTTCTCATTCTCTCCCTCTTGTGTCTTCAATCTCTATCATCCTCCAACACCAAAAAAAATGCCTCAAAAACAAGAAAAACAATTATCAATGATCAATTCAAAGAAGCCCCTCAATTCTACAACTCACCAAATTGTGCCTCCATCAGTGAACCAGAAGAAGACACCGAACATGACACTGACACATATATCTGCTCTGAGGAAGCAGTCCATGTGGCAATGACATTAGACACAACATATATCCGAGGTTCCATGGCTGCAATCCTCTCTGTCCTCCAACACTCATCATGTCCACAAAACATCATCTTTCACTTCGTTTGTTCCTCAAACACTTCACTTCTTCATTCCATAATCTCAAAATCATTCCCTTACCTCAAATTCCAAGTCTACAATTTCGATGATTCAATCGTTTCGGGATTAATCTCAACCTCAATTCGATCAGCACTTGATTGTCCACTCAATTATGCAAGAAGCTATTTGGCAAATCTAATTCCATTATGTGTAAGAAAAGTTGTGTACTTGGATTCAGACCTTATCTTAGTTGATGATATCGCAAAACTTGCATCAACACCATTAGCCGAAAAAAATGCAGTTTTGGCAGCACCGGAGTATTGCAATGCAAATTTCACATTTTACTTCACACCAACATTTTGGTCCAACCCATCTTTGTCTTTAACATTCGCGAATCGAAAACCTTGTTACTTTAATACCGGGGTTATGGTAATTGATCTAGAAAAATGGCGCGACGGTGATTACACAACAAAGATTGAGGAATGGATGGAATTACAAAAGAGGATGAGAATCTATGAACTTGGTTCATTGCCACCTTTTTTGCTTGTTTTTGCAGGGGAAATTGTTCCTGTGGATCATAGATGGAATCAACATGGTCTTGGTGGTGATAATTTTCGAGGTCTTTGTCGAGATCTTCATCCAGGTCCAGTGAGTTTATTGCATTGGAGTGGAAAAGGTAAACCATGGGTGAGATTGGATGCTAATAGACCTTGTCCTTTGGATGCTCTTTGGGCACCTTATGATCTTTTGCAGACACCATTTTCTCTTGATTCTTGA

Protein sequence

>Msa0145680

MKINFPKPKLLFFFLILSLLCLQSLSSSNTKKNASKTRKTIINDQFKEAPQFYNSPNCASISEPEEDTEHDTDTYICSEEAVHVAMTLDTTYIRGSMAAILSVLQHSSCPQNIIFHFVCSSNTSLLHSIISKSFPYLKFQVYNFDDSIVSGLISTSIRSALDCPLNYARSYLANLIPLCVRKVVYLDSDLILVDDIAKLASTPLAEKNAVLAAPEYCNANFTFYFTPTFWSNPSLSLTFANRKPCYFNTGVMVIDLEKWRDGDYTTKIEEWMELQKRMRIYELGSLPPFLLVFAGEIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLQTPFSLDS*