AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042640 MtrunA17_Chr1g0208231 92.513 374 23 2 17 385 11 384 0.0 666
Msa0042640 MtrunA17_Chr3g0134261 54.722 360 136 12 14 364 3 344 8.78e-115 338
Msa0042640 MtrunA17_Chr4g0053381 49.724 362 163 7 23 379 8 355 1.90e-112 332
Msa0042640 MtrunA17_Chr5g0412471 36.604 265 153 3 109 369 92 345 2.03e-47 164
Msa0042640 MtrunA17_Chr4g0041721 33.460 263 162 7 75 332 59 313 3.43e-45 159
Msa0042640 MtrunA17_Chr3g0133211 35.433 254 152 5 95 341 82 330 1.99e-42 152
Msa0042640 MtrunA17_Chr5g0414271 38.839 224 126 2 97 311 56 277 2.56e-39 143
Msa0042640 MtrunA17_Chr8g0364521 36.638 232 136 2 95 317 71 300 2.22e-38 141
Msa0042640 MtrunA17_Chr5g0427191 31.890 254 164 3 107 355 86 335 1.31e-33 128
Msa0042640 MtrunA17_Chr5g0401271 31.010 287 170 8 33 303 18 292 2.47e-30 119
Msa0042640 MtrunA17_Chr8g0367661 33.047 233 136 6 109 331 108 330 9.34e-30 118
Msa0042640 MtrunA17_Chr3g0134781 40.523 153 87 2 73 225 34 182 7.36e-29 114
Msa0042640 MtrunA17_Chr2g0323361 30.159 252 147 9 124 360 64 301 3.05e-22 95.9
Msa0042640 MtrunA17_Chr2g0280941 32.484 157 99 3 111 267 43 192 1.90e-20 90.1
Msa0042640 MtrunA17_Chr4g0054011 30.348 201 132 6 72 267 31 228 4.13e-14 72.8
Msa0042640 MtrunA17_Chr1g0152871 29.814 161 95 5 113 265 131 281 2.17e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042640 AT4G34160.1 56.209 306 110 6 1 306 1 282 7.02e-109 324
Msa0042640 AT5G67260.1 44.828 377 177 9 14 381 11 365 6.63e-94 286
Msa0042640 AT5G67260.2 45.528 369 170 9 14 373 11 357 1.04e-91 281
Msa0042640 AT3G50070.1 42.895 373 186 7 14 382 10 359 2.09e-89 274
Msa0042640 AT2G22490.1 35.931 231 135 3 109 331 97 322 3.07e-43 154
Msa0042640 AT2G22490.2 35.776 232 135 4 109 331 97 323 1.89e-41 149
Msa0042640 AT1G70210.1 38.424 203 125 0 109 311 82 284 1.52e-40 146
Msa0042640 AT5G65420.4 48.718 117 60 0 109 225 78 194 4.18e-35 130
Msa0042640 AT5G65420.2 49.138 116 59 0 109 224 78 193 4.36e-35 129
Msa0042640 AT5G65420.1 49.138 116 59 0 109 224 78 193 8.19e-35 130
Msa0042640 AT5G65420.3 45.238 126 59 1 109 224 78 203 9.88e-33 125
Msa0042640 AT5G10440.1 34.247 219 143 1 50 267 10 228 2.43e-30 118
Msa0042640 AT5G10440.2 37.143 175 110 0 50 224 10 184 1.04e-29 114
Msa0042640 AT4G03270.1 30.820 305 179 11 70 362 16 300 3.28e-24 101
Msa0042640 AT4G03270.2 30.820 305 178 12 70 362 16 299 1.39e-22 97.1
Msa0042640 AT4G37630.2 36.806 144 82 3 90 225 45 187 2.73e-21 92.8
Msa0042640 AT4G37630.3 36.986 146 81 4 90 225 45 189 1.12e-20 91.3
Msa0042640 AT4G37630.1 36.986 146 81 4 90 225 45 189 2.27e-20 91.3
Msa0042640 AT5G02110.1 25.180 278 186 8 105 376 74 335 1.75e-19 89.0
Msa0042640 AT5G02110.2 25.541 231 150 8 152 376 92 306 6.40e-15 75.5

Find 93 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTCATGTAAATGAATT+TGG 0.114219 1_1:-73551906 None:intergenic
ATCATATTTCTATAATAAAT+TGG 0.121107 1_1:+73552138 Msa0042640:three_prime_UTR
CTTCTAGACCATACCAAATT+TGG 0.122651 1_1:+73552105 Msa0042640:three_prime_UTR
ATTTGTTTGTTTGAAATATT+TGG 0.165317 1_1:+73552353 Msa0042640:three_prime_UTR
CTTAAAGTCAATGCTCATTA+TGG 0.232843 1_1:+73550436 Msa0042640:CDS
GATATAAATATGTCCAAATT+TGG 0.245540 1_1:-73552118 None:intergenic
ATCTTCATTGGGAGTTTCTT+AGG 0.261503 1_1:+73550849 Msa0042640:CDS
TGAATTTGTCACCGATTAAC+AGG 0.270558 1_1:+73551679 Msa0042640:CDS
CTAACAAAAGCAGAGGTAAA+AGG 0.274372 1_1:-73550267 None:intergenic
AGATCTATATTTATTTACTA+TGG 0.284803 1_1:+73551809 Msa0042640:three_prime_UTR
GATTGAAAACTAATCTTCAT+TGG 0.293518 1_1:+73550837 Msa0042640:CDS
GTAGAAGAGTAGAGAGTATA+GGG 0.309426 1_1:-73549872 None:intergenic
ATGATATCTGTTTCATTTCA+AGG 0.312964 1_1:+73552052 Msa0042640:three_prime_UTR
AGATGATGATAGAGGATTAA+AGG 0.316170 1_1:+73551946 Msa0042640:three_prime_UTR
AACAACAAACTATGATATAT+TGG 0.316538 1_1:+73550234 Msa0042640:CDS
CTTACAAATGCAAATAATTA+TGG 0.328803 1_1:+73551498 Msa0042640:CDS
CTACTATGATAAAATAATAT+TGG 0.355346 1_1:-73552448 None:intergenic
TTGCTGTTAACTATCTTGAT+AGG 0.355913 1_1:+73550482 Msa0042640:CDS
TGAAATGAAACAGATATCAT+AGG 0.368633 1_1:-73552049 None:intergenic
TTTATAGATTCAAGATTTGT+TGG 0.378968 1_1:+73551078 Msa0042640:intron
TTCTTGTTGAGTTATCTCTT+TGG 0.382076 1_1:-73550335 None:intergenic
AGTAGAAGAGTAGAGAGTAT+AGG 0.384511 1_1:-73549873 None:intergenic
AAGTGTGTTGTTGAAGTTGT+TGG 0.394682 1_1:-73550117 None:intergenic
TCATATTTCTATAATAAATT+GGG 0.397018 1_1:+73552139 Msa0042640:three_prime_UTR
AGATTCATGTAAATGAATTT+GGG 0.403114 1_1:-73551905 None:intergenic
TGATTCTGTCAACACTGAAA+TGG 0.427443 1_1:+73550759 Msa0042640:CDS
TTCTTGGTCTTCTTAAACAC+AGG 0.430266 1_1:-73551642 None:intergenic
ATTGAAAACTAATCTTCATT+GGG 0.430502 1_1:+73550838 Msa0042640:CDS
TTTATTTAATCTAGTAAGAC+AGG 0.433476 1_1:+73552472 Msa0042640:three_prime_UTR
GAGAGAGTGAGAGCAGAGAA+AGG 0.437223 1_1:-73549902 None:intergenic
AAAGGACAGAAAACGGATAG+AGG 0.440283 1_1:-73551744 None:intergenic
TTCTAGATCACATTATAAGA+AGG 0.447293 1_1:+73550810 Msa0042640:CDS
AAATGAATTTGGGACATTGT+TGG 0.449762 1_1:-73551895 None:intergenic
CCGACAATGACCCTGTTAAT+CGG 0.454527 1_1:-73551690 None:intergenic
TATCATCACTCTGTTCAATC+TGG 0.455099 1_1:-73551149 None:intergenic
GATCACATTATAAGAAGGCT+TGG 0.460558 1_1:+73550815 Msa0042640:CDS
TTTGAGTGGACCATTTGGTT+GGG 0.464110 1_1:-73552416 None:intergenic
GTTTGAAATATTTGGATGGA+TGG 0.468379 1_1:+73552361 Msa0042640:three_prime_UTR
ATTACGCCACTTGGACTACC+AGG 0.474746 1_1:-73551546 None:intergenic
GAAGGAGAAGTTGTAGATGA+AGG 0.479700 1_1:+73550193 Msa0042640:CDS
TAACAAAAGCAGAGGTAAAA+GGG 0.491260 1_1:-73550266 None:intergenic
AGATACTAAATATGTGTTTG+AGG 0.495892 1_1:+73550709 Msa0042640:CDS
AGACAGGAAGAAATAAAGAA+AGG 0.496540 1_1:+73552488 Msa0042640:three_prime_UTR
AGAGTAGAGAGTATAGGGAG+AGG 0.513215 1_1:-73549867 None:intergenic
AAAGGAATGGTTAATTTCTG+AGG 0.517117 1_1:+73551964 Msa0042640:three_prime_UTR
AGAAAAGAGTGTGTTGTCAC+TGG 0.519215 1_1:-73550791 None:intergenic
GGCAAAGACTATTCAGAGAA+TGG 0.519295 1_1:+73550730 Msa0042640:CDS
ATGATAGAGGATTAAAGGAA+TGG 0.522983 1_1:+73551951 Msa0042640:three_prime_UTR
TAAAGAGGAAAGGACAAAGT+TGG 0.524560 1_1:+73551990 Msa0042640:three_prime_UTR
ACAGCATCAATTACGCCACT+TGG 0.527358 1_1:-73551555 None:intergenic
TGAAATATTTGGATGGATGG+TGG 0.528447 1_1:+73552364 Msa0042640:three_prime_UTR
CCGATTAACAGGGTCATTGT+CGG 0.532014 1_1:+73551690 Msa0042640:CDS
TTTAAGAAGACCAAGAATCA+AGG 0.533821 1_1:+73551648 Msa0042640:CDS
CACGTCGTGAAGCTGTTGAA+TGG 0.536577 1_1:+73550410 Msa0042640:CDS
ATTGAACAGAGTGATGATAA+TGG 0.537100 1_1:+73551153 Msa0042640:CDS
TAATTTCTGAGGAGTTAAAG+AGG 0.537174 1_1:+73551975 Msa0042640:three_prime_UTR
AAATATGTCCAAATTTGGTA+TGG 0.537560 1_1:-73552113 None:intergenic
CTGATGGTTCTAACGATTCG+TGG 0.539073 1_1:+73551586 Msa0042640:CDS
TGGTTGTGTTCCTTCTGTGT+TGG 0.540643 1_1:+73551098 Msa0042640:CDS
CAGTGGCAAGATGATGATAG+AGG 0.542425 1_1:+73551938 Msa0042640:three_prime_UTR
CTCTTCTTCACTGAAGAAGA+TGG 0.544080 1_1:+73550069 Msa0042640:exon
TCTGAGGAGTTAAAGAGGAA+AGG 0.549398 1_1:+73551980 Msa0042640:three_prime_UTR
GAAATGAAACAGATATCATA+GGG 0.549435 1_1:-73552048 None:intergenic
AGATGTGCGACCCAACCAAA+TGG 0.552472 1_1:+73552406 Msa0042640:three_prime_UTR
TTTACATGAATCTCTTGAAG+AGG 0.556584 1_1:+73551915 Msa0042640:three_prime_UTR
CGAAAATATGAAGAAATCCC+TGG 0.561909 1_1:+73551528 Msa0042640:CDS
AAGGACAGAAAACGGATAGA+GGG 0.568780 1_1:-73551743 None:intergenic
TGAATCTCTTGAAGAGGCAG+TGG 0.568786 1_1:+73551921 Msa0042640:three_prime_UTR
CATCTTCTTCAGTGAAGAAG+AGG 0.570851 1_1:-73550068 None:intergenic
AATATTTGGATGGATGGTGG+TGG 0.572220 1_1:+73552367 Msa0042640:three_prime_UTR
GTTTGTTTGAAATATTTGGA+TGG 0.587629 1_1:+73552357 Msa0042640:three_prime_UTR
ACAGAGAAGACAGAACAAAG+AGG 0.595388 1_1:+73549971 Msa0042640:five_prime_UTR
ATATTTGGATGGATGGTGGT+GGG 0.598602 1_1:+73552368 Msa0042640:three_prime_UTR
TTCTGTTCTAACAAAAGCAG+AGG 0.599651 1_1:-73550274 None:intergenic
AACATGCAACATTGTAGCAG+TGG 0.604318 1_1:-73551121 None:intergenic
TGTGAAAATGTGAAGAAATG+AGG 0.604573 1_1:-73549945 None:intergenic
CTTCTTAAACACAGGCTCTG+AGG 0.608564 1_1:-73551634 None:intergenic
ACTTGAAGGTCTAAGAGAAG+AGG 0.611584 1_1:-73550607 None:intergenic
GGTGATTGTGATGATGATGA+TGG 0.615500 1_1:-73550096 None:intergenic
GTAGCAGTGGCCAACACAGA+AGG 0.618074 1_1:-73551108 None:intergenic
TCAGTGAAGAAGAGGGTGTG+TGG 0.620217 1_1:-73550060 None:intergenic
AAGAGGAAAAGAGAGAGCGA+TGG 0.620696 1_1:+73549988 Msa0042640:five_prime_UTR
TTCTAACGATTCGTGGACAG+TGG 0.621696 1_1:+73551593 Msa0042640:CDS
CATTCAACAGCTTCACGACG+TGG 0.624467 1_1:-73550409 None:intergenic
TCTAACGATTCGTGGACAGT+GGG 0.629045 1_1:+73551594 Msa0042640:CDS
GCAACAAGCTGAATCATCCA+TGG 0.629983 1_1:-73550538 None:intergenic
TAATGTTCTCAAAATCAGCA+AGG 0.638487 1_1:+73551200 Msa0042640:CDS
GAATTTGTCACCGATTAACA+GGG 0.642593 1_1:+73551680 Msa0042640:CDS
TTACGCCACTTGGACTACCA+GGG 0.660070 1_1:-73551545 None:intergenic
ATCTTCTTCAGTGAAGAAGA+GGG 0.660634 1_1:-73550067 None:intergenic
GAAATCCCTGGTAGTCCAAG+TGG 0.669163 1_1:+73551540 Msa0042640:CDS
ACAGAGTGATGATAATGGTG+TGG 0.694988 1_1:+73551158 Msa0042640:CDS
TCAACAAGAAACATATTACG+AGG 0.716642 1_1:+73550348 Msa0042640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTTTAAATAAAA+AGG - chr1_1:73551765-73551784 None:intergenic 0.0%
!!! AAATTAAACATAAAGTATTA+AGG - chr1_1:73551260-73551279 None:intergenic 10.0%
!!! AAATAAATATAGATCTTTTT+GGG - chr1_1:73551805-73551824 None:intergenic 10.0%
!!! TAAATAAATATAGATCTTTT+TGG - chr1_1:73551806-73551825 None:intergenic 10.0%
!!! TGTTTTTTAATTTTATTCAA+TGG + chr1_1:73552078-73552097 Msa0042640:three_prime_UTR 10.0%
!!! ATCATATTTCTATAATAAAT+TGG + chr1_1:73552138-73552157 Msa0042640:three_prime_UTR 10.0%
!!! TCATATTTCTATAATAAATT+GGG + chr1_1:73552139-73552158 Msa0042640:three_prime_UTR 10.0%
!!! TTATGTTTGTTTGTTTTTTA+AGG + chr1_1:73550682-73550701 Msa0042640:intron 15.0%
!!! AATAAATATAGATCTTTTTG+GGG - chr1_1:73551804-73551823 None:intergenic 15.0%
!! AGATCTATATTTATTTACTA+TGG + chr1_1:73551809-73551828 Msa0042640:three_prime_UTR 15.0%
!!! AATAAATTGGGAATAATTTT+TGG + chr1_1:73552151-73552170 Msa0042640:three_prime_UTR 15.0%
!!! ATTTGTTTGTTTGAAATATT+TGG + chr1_1:73552353-73552372 Msa0042640:three_prime_UTR 15.0%
!! CTACTATGATAAAATAATAT+TGG - chr1_1:73552451-73552470 None:intergenic 15.0%
!! CTTTGTTCATTATAAAAAGA+AGG - chr1_1:73550038-73550057 None:intergenic 20.0%
!!! CTTCTTTTTATAATGAACAA+AGG + chr1_1:73550036-73550055 Msa0042640:five_prime_UTR 20.0%
!! AACAACAAACTATGATATAT+TGG + chr1_1:73550234-73550253 Msa0042640:CDS 20.0%
!! AACAAACAAACATAAGAAAA+GGG - chr1_1:73550677-73550696 None:intergenic 20.0%
!! AAACAAACAAACATAAGAAA+AGG - chr1_1:73550678-73550697 None:intergenic 20.0%
!! ATTGAAAACTAATCTTCATT+GGG + chr1_1:73550838-73550857 Msa0042640:CDS 20.0%
!! TTTATAGATTCAAGATTTGT+TGG + chr1_1:73551078-73551097 Msa0042640:intron 20.0%
!! CTTACAAATGCAAATAATTA+TGG + chr1_1:73551498-73551517 Msa0042640:CDS 20.0%
!! TAAATAAAAAGGACAGAAAA+CGG - chr1_1:73551754-73551773 None:intergenic 20.0%
!!! ATAAATATAGATCTTTTTGG+GGG - chr1_1:73551803-73551822 None:intergenic 20.0%
!! AGATTCATGTAAATGAATTT+GGG - chr1_1:73551908-73551927 None:intergenic 20.0%
!! GATATAAATATGTCCAAATT+TGG - chr1_1:73552121-73552140 None:intergenic 20.0%
!!! TTTTTGTTTATAATAGTGAC+CGG - chr1_1:73552205-73552224 None:intergenic 20.0%
!!! TAATGAATGAATCTAGAATA+TGG - chr1_1:73552229-73552248 None:intergenic 20.0%
!! TTTATTTAATCTAGTAAGAC+AGG + chr1_1:73552472-73552491 Msa0042640:three_prime_UTR 20.0%
! AGATACTAAATATGTGTTTG+AGG + chr1_1:73550709-73550728 Msa0042640:CDS 25.0%
! TTCTAGATCACATTATAAGA+AGG + chr1_1:73550810-73550829 Msa0042640:CDS 25.0%
! GATTGAAAACTAATCTTCAT+TGG + chr1_1:73550837-73550856 Msa0042640:CDS 25.0%
!!! TGAAAGAGTACTAAAAATGT+TGG - chr1_1:73550916-73550935 None:intergenic 25.0%
! AATTCAATAGAACTACTCAA+TGG + chr1_1:73551294-73551313 Msa0042640:intron 25.0%
! ATTCAATAGAACTACTCAAT+GGG + chr1_1:73551295-73551314 Msa0042640:intron 25.0%
! TCATACACAATATACACATA+TGG - chr1_1:73551322-73551341 None:intergenic 25.0%
! TAAACAAAAAACACATGCAA+AGG - chr1_1:73551439-73551458 None:intergenic 25.0%
!!! TTTGGGGGTAATTTTTTATA+TGG - chr1_1:73551788-73551807 None:intergenic 25.0%
! GAGATTCATGTAAATGAATT+TGG - chr1_1:73551909-73551928 None:intergenic 25.0%
! GAAATGAAACAGATATCATA+GGG - chr1_1:73552051-73552070 None:intergenic 25.0%
! TGAAATGAAACAGATATCAT+AGG - chr1_1:73552052-73552071 None:intergenic 25.0%
! ATGATATCTGTTTCATTTCA+AGG + chr1_1:73552052-73552071 Msa0042640:three_prime_UTR 25.0%
! AAATATGTCCAAATTTGGTA+TGG - chr1_1:73552116-73552135 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + chr1_1:73552240-73552259 Msa0042640:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr1_1:73552240-73552259 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+AGG + chr1_1:73552314-73552333 Msa0042640:intron 25.0%
!! GTTTGTTTGAAATATTTGGA+TGG + chr1_1:73552357-73552376 Msa0042640:three_prime_UTR 25.0%
TGTGAAAATGTGAAGAAATG+AGG - chr1_1:73549948-73549967 None:intergenic 30.0%
ACTGTGATGAAGAAGAAAAA+TGG + chr1_1:73550161-73550180 Msa0042640:CDS 30.0%
CTGTGATGAAGAAGAAAAAT+GGG + chr1_1:73550162-73550181 Msa0042640:CDS 30.0%
TAACAAAAGCAGAGGTAAAA+GGG - chr1_1:73550269-73550288 None:intergenic 30.0%
TTCTTGTTGAGTTATCTCTT+TGG - chr1_1:73550338-73550357 None:intergenic 30.0%
TCAACAAGAAACATATTACG+AGG + chr1_1:73550348-73550367 Msa0042640:CDS 30.0%
CTTAAAGTCAATGCTCATTA+TGG + chr1_1:73550436-73550455 Msa0042640:CDS 30.0%
! TTGCTGTTAACTATCTTGAT+AGG + chr1_1:73550482-73550501 Msa0042640:CDS 30.0%
!! ATGGTTTCTCTTTTTGGAAA+TGG - chr1_1:73550522-73550541 None:intergenic 30.0%
ATTTCCAAAAAGAGAAACCA+TGG + chr1_1:73550521-73550540 Msa0042640:CDS 30.0%
ATAGAAGATAACGTACTTGA+AGG - chr1_1:73550624-73550643 None:intergenic 30.0%
! CTTCTTCTATCTGTACTTTT+AGG + chr1_1:73550884-73550903 Msa0042640:CDS 30.0%
ATTGAACAGAGTGATGATAA+TGG + chr1_1:73551153-73551172 Msa0042640:CDS 30.0%
TAATGTTCTCAAAATCAGCA+AGG + chr1_1:73551200-73551219 Msa0042640:CDS 30.0%
!!! TGCATGTGTTTTTTGTTTAC+AGG + chr1_1:73551440-73551459 Msa0042640:intron 30.0%
TTTAAGAAGACCAAGAATCA+AGG + chr1_1:73551648-73551667 Msa0042640:CDS 30.0%
! CATATTTTGTCCTTGATTCT+TGG - chr1_1:73551661-73551680 None:intergenic 30.0%
! AAATGAATTTGGGACATTGT+TGG - chr1_1:73551898-73551917 None:intergenic 30.0%
TTTACATGAATCTCTTGAAG+AGG + chr1_1:73551915-73551934 Msa0042640:three_prime_UTR 30.0%
AGATGATGATAGAGGATTAA+AGG + chr1_1:73551946-73551965 Msa0042640:three_prime_UTR 30.0%
ATGATAGAGGATTAAAGGAA+TGG + chr1_1:73551951-73551970 Msa0042640:three_prime_UTR 30.0%
AAAGGAATGGTTAATTTCTG+AGG + chr1_1:73551964-73551983 Msa0042640:three_prime_UTR 30.0%
! TAATTTCTGAGGAGTTAAAG+AGG + chr1_1:73551975-73551994 Msa0042640:three_prime_UTR 30.0%
! GTTTGAAATATTTGGATGGA+TGG + chr1_1:73552361-73552380 Msa0042640:three_prime_UTR 30.0%
! ATTGGTAAAGAGATTTTGAG+TGG - chr1_1:73552433-73552452 None:intergenic 30.0%
AGACAGGAAGAAATAAAGAA+AGG + chr1_1:73552488-73552507 Msa0042640:three_prime_UTR 30.0%
! GTAGAAGAGTAGAGAGTATA+GGG - chr1_1:73549875-73549894 None:intergenic 35.0%
! AGTAGAAGAGTAGAGAGTAT+AGG - chr1_1:73549876-73549895 None:intergenic 35.0%
ATCTTCTTCAGTGAAGAAGA+GGG - chr1_1:73550070-73550089 None:intergenic 35.0%
! AAGTGTGTTGTTGAAGTTGT+TGG - chr1_1:73550120-73550139 None:intergenic 35.0%
GAAAAATGGGAAGATGATGA+AGG + chr1_1:73550175-73550194 Msa0042640:CDS 35.0%
CTAACAAAAGCAGAGGTAAA+AGG - chr1_1:73550270-73550289 None:intergenic 35.0%
TTCTGTTCTAACAAAAGCAG+AGG - chr1_1:73550277-73550296 None:intergenic 35.0%
! TCATCCATGGTTTCTCTTTT+TGG - chr1_1:73550528-73550547 None:intergenic 35.0%
TGATTCTGTCAACACTGAAA+TGG + chr1_1:73550759-73550778 Msa0042640:CDS 35.0%
GATCACATTATAAGAAGGCT+TGG + chr1_1:73550815-73550834 Msa0042640:CDS 35.0%
ATCTTCATTGGGAGTTTCTT+AGG + chr1_1:73550849-73550868 Msa0042640:CDS 35.0%
TATCATCACTCTGTTCAATC+TGG - chr1_1:73551152-73551171 None:intergenic 35.0%
CGAAAATATGAAGAAATCCC+TGG + chr1_1:73551528-73551547 Msa0042640:CDS 35.0%
!!! GATGCTGTTTTTAGTTCTGA+TGG + chr1_1:73551570-73551589 Msa0042640:CDS 35.0%
! TTCTTGGTCTTCTTAAACAC+AGG - chr1_1:73551645-73551664 None:intergenic 35.0%
! TGAATTTGTCACCGATTAAC+AGG + chr1_1:73551679-73551698 Msa0042640:CDS 35.0%
! GAATTTGTCACCGATTAACA+GGG + chr1_1:73551680-73551699 Msa0042640:CDS 35.0%
! AAAACGGATAGAGGGTTTTA+AGG - chr1_1:73551738-73551757 None:intergenic 35.0%
TAAAGAGGAAAGGACAAAGT+TGG + chr1_1:73551990-73552009 Msa0042640:three_prime_UTR 35.0%
CTTCTAGACCATACCAAATT+TGG + chr1_1:73552105-73552124 Msa0042640:three_prime_UTR 35.0%
TATGTATATACTACACCCTC+CGG + chr1_1:73552183-73552202 Msa0042640:intron 35.0%
TGTTTATAATAGTGACCGGA+GGG - chr1_1:73552201-73552220 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG - chr1_1:73552202-73552221 None:intergenic 35.0%
TTGCTTATAATAGTGACAGG+AGG + chr1_1:73552317-73552336 Msa0042640:intron 35.0%
TGAAATATTTGGATGGATGG+TGG + chr1_1:73552364-73552383 Msa0042640:three_prime_UTR 35.0%
! GTGATGATTTTCAGCTGAGT+GGG - chr1_1:73549826-73549845 None:intergenic 40.0%
! AGTGATGATTTTCAGCTGAG+TGG - chr1_1:73549827-73549846 None:intergenic 40.0%
ACAGAGAAGACAGAACAAAG+AGG + chr1_1:73549971-73549990 Msa0042640:five_prime_UTR 40.0%
CATCTTCTTCAGTGAAGAAG+AGG - chr1_1:73550071-73550090 None:intergenic 40.0%
CTCTTCTTCACTGAAGAAGA+TGG + chr1_1:73550069-73550088 Msa0042640:exon 40.0%
! GGTGATTGTGATGATGATGA+TGG - chr1_1:73550099-73550118 None:intergenic 40.0%
GAAGGAGAAGTTGTAGATGA+AGG + chr1_1:73550193-73550212 Msa0042640:CDS 40.0%
ACTTGAAGGTCTAAGAGAAG+AGG - chr1_1:73550610-73550629 None:intergenic 40.0%
GGCAAAGACTATTCAGAGAA+TGG + chr1_1:73550730-73550749 Msa0042640:CDS 40.0%
! AGAAAAGAGTGTGTTGTCAC+TGG - chr1_1:73550794-73550813 None:intergenic 40.0%
AACATGCAACATTGTAGCAG+TGG - chr1_1:73551124-73551143 None:intergenic 40.0%
!! ACAGAGTGATGATAATGGTG+TGG + chr1_1:73551158-73551177 Msa0042640:CDS 40.0%
AAGGACAGAAAACGGATAGA+GGG - chr1_1:73551746-73551765 None:intergenic 40.0%
AAAGGACAGAAAACGGATAG+AGG - chr1_1:73551747-73551766 None:intergenic 40.0%
TCTGAGGAGTTAAAGAGGAA+AGG + chr1_1:73551980-73551999 Msa0042640:three_prime_UTR 40.0%
! AATATTTGGATGGATGGTGG+TGG + chr1_1:73552367-73552386 Msa0042640:three_prime_UTR 40.0%
! ATATTTGGATGGATGGTGGT+GGG + chr1_1:73552368-73552387 Msa0042640:three_prime_UTR 40.0%
TTTGAGTGGACCATTTGGTT+GGG - chr1_1:73552419-73552438 None:intergenic 40.0%
!! TTTTGAGTGGACCATTTGGT+TGG - chr1_1:73552420-73552439 None:intergenic 40.0%
!! GAGATTTTGAGTGGACCATT+TGG - chr1_1:73552424-73552443 None:intergenic 40.0%
! AGAGTAGAGAGTATAGGGAG+AGG - chr1_1:73549870-73549889 None:intergenic 45.0%
AAGAGGAAAAGAGAGAGCGA+TGG + chr1_1:73549988-73550007 Msa0042640:five_prime_UTR 45.0%
GCAACAAGCTGAATCATCCA+TGG - chr1_1:73550541-73550560 None:intergenic 45.0%
TGGTTGTGTTCCTTCTGTGT+TGG + chr1_1:73551098-73551117 Msa0042640:CDS 45.0%
ACAGCATCAATTACGCCACT+TGG - chr1_1:73551558-73551577 None:intergenic 45.0%
!! CTGATGGTTCTAACGATTCG+TGG + chr1_1:73551586-73551605 Msa0042640:CDS 45.0%
TTCTAACGATTCGTGGACAG+TGG + chr1_1:73551593-73551612 Msa0042640:CDS 45.0%
TCTAACGATTCGTGGACAGT+GGG + chr1_1:73551594-73551613 Msa0042640:CDS 45.0%
CTTCTTAAACACAGGCTCTG+AGG - chr1_1:73551637-73551656 None:intergenic 45.0%
CCGACAATGACCCTGTTAAT+CGG - chr1_1:73551693-73551712 None:intergenic 45.0%
CCGATTAACAGGGTCATTGT+CGG + chr1_1:73551690-73551709 Msa0042640:CDS 45.0%
!!! GTTTTAAGGAGAGGTTGCAG+TGG - chr1_1:73551724-73551743 None:intergenic 45.0%
!!! GGATAGAGGGTTTTAAGGAG+AGG - chr1_1:73551733-73551752 None:intergenic 45.0%
TGAATCTCTTGAAGAGGCAG+TGG + chr1_1:73551921-73551940 Msa0042640:three_prime_UTR 45.0%
CAGTGGCAAGATGATGATAG+AGG + chr1_1:73551938-73551957 Msa0042640:three_prime_UTR 45.0%
GAGAGAGTGAGAGCAGAGAA+AGG - chr1_1:73549905-73549924 None:intergenic 50.0%
! TCAGTGAAGAAGAGGGTGTG+TGG - chr1_1:73550063-73550082 None:intergenic 50.0%
CATTCAACAGCTTCACGACG+TGG - chr1_1:73550412-73550431 None:intergenic 50.0%
CACGTCGTGAAGCTGTTGAA+TGG + chr1_1:73550410-73550429 Msa0042640:CDS 50.0%
GCAAGGTCAGTAGTAGTAGC+TGG + chr1_1:73551217-73551236 Msa0042640:intron 50.0%
GAAATCCCTGGTAGTCCAAG+TGG + chr1_1:73551540-73551559 Msa0042640:CDS 50.0%
TTACGCCACTTGGACTACCA+GGG - chr1_1:73551548-73551567 None:intergenic 50.0%
ATTACGCCACTTGGACTACC+AGG - chr1_1:73551549-73551568 None:intergenic 50.0%
AGATGTGCGACCCAACCAAA+TGG + chr1_1:73552406-73552425 Msa0042640:three_prime_UTR 50.0%
GTAGCAGTGGCCAACACAGA+AGG - chr1_1:73551111-73551130 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73549800 73552514 73549800 ID=Msa0042640;Name=Msa0042640
chr1_1 mRNA 73549800 73552514 73549800 ID=Msa0042640-mRNA-1;Parent=Msa0042640;Name=Msa0042640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=288|1|1|1|0.75|0.6|5|624|385
chr1_1 exon 73549800 73550627 73549800 ID=Msa0042640-mRNA-1:exon:24636;Parent=Msa0042640-mRNA-1
chr1_1 exon 73550704 73550905 73550704 ID=Msa0042640-mRNA-1:exon:24637;Parent=Msa0042640-mRNA-1
chr1_1 exon 73551085 73551221 73551085 ID=Msa0042640-mRNA-1:exon:24638;Parent=Msa0042640-mRNA-1
chr1_1 exon 73551462 73552185 73551462 ID=Msa0042640-mRNA-1:exon:24639;Parent=Msa0042640-mRNA-1
chr1_1 exon 73552336 73552514 73552336 ID=Msa0042640-mRNA-1:exon:24640;Parent=Msa0042640-mRNA-1
chr1_1 five_prime_UTR 73549800 73550087 73549800 ID=Msa0042640-mRNA-1:five_prime_utr;Parent=Msa0042640-mRNA-1
chr1_1 CDS 73550088 73550627 73550088 ID=Msa0042640-mRNA-1:cds;Parent=Msa0042640-mRNA-1
chr1_1 CDS 73550704 73550905 73550704 ID=Msa0042640-mRNA-1:cds;Parent=Msa0042640-mRNA-1
chr1_1 CDS 73551085 73551221 73551085 ID=Msa0042640-mRNA-1:cds;Parent=Msa0042640-mRNA-1
chr1_1 CDS 73551462 73551740 73551462 ID=Msa0042640-mRNA-1:cds;Parent=Msa0042640-mRNA-1
chr1_1 three_prime_UTR 73551741 73552185 73551741 ID=Msa0042640-mRNA-1:three_prime_utr;Parent=Msa0042640-mRNA-1
chr1_1 three_prime_UTR 73552336 73552514 73552336 ID=Msa0042640-mRNA-1:three_prime_utr;Parent=Msa0042640-mRNA-1
Gene Sequence

>Msa0042640

ATGGCTATCCATCATCATCATCACAATCACCAACAACTTCAACAACACACTTCTTCTCTTTTTGATGCACTTTACTGTGATGAAGAAGAAAAATGGGAAGATGATGAAGGAGAAGTTGTAGATGAAGGAGAACAAAGTGATGTCACAACAACAAACTATGATATATTGGACTCTACTTCCCTTTTACCTCTGCTTTTGTTAGAACAGAACTTGTTCAATGAAGATGAAGAACTCAACACTCTTTTCTCCAAAGAGATAACTCAACAAGAAACATATTACGAGGATCTGAAAAATGTGATCAACTTTGACTCACTCTCTCAACCACGTCGTGAAGCTGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTGCTCTCACTGCAACACTTGCTGTTAACTATCTTGATAGGTTTCTTTTAAGCTTCCATTTCCAAAAAGAGAAACCATGGATGATTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAGTGCAAGATACTAAATATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTATTGATTCTGTCAACACTGAAATGGAAGATGCATCCAGTGACAACACACTCTTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACTAATCTTCATTGGGAGTTTCTTAGGCGCTGTGAGAATCTTCTTCTATCTGTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCTTCTGTGTTGGCCACTGCTACAATGTTGCATGTTATAGACCAGATTGAACAGAGTGATGATAATGGTGTGGATTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGGAGAAAGTTGATGAATGTTATAATGCGATTCTTCATCTTACAAATGCAAATAATTATGGTCATAAACGAAAATATGAAGAAATCCCTGGTAGTCCAAGTGGCGTAATTGATGCTGTTTTTAGTTCTGATGGTTCTAACGATTCGTGGACAGTGGGAGCATCATCATATTCAACCTCAGAGCCTGTGTTTAAGAAGACCAAGAATCAAGGACAAAATATGAATTTGTCACCGATTAACAGGGTCATTGTCGGAATTCTTGCCACTGCAACCTCTCCTTAA

Protein sequence

>Msa0042640

MAIHHHHHNHQQLQQHTSSLFDALYCDEEEKWEDDEGEVVDEGEQSDVTTTNYDILDSTSLLPLLLLEQNLFNEDEELNTLFSKEITQQETYYEDLKNVINFDSLSQPRREAVEWMLKVNAHYGFSALTATLAVNYLDRFLLSFHFQKEKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTTHSFLDHIIRRLGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDNGVDYKNQLLNVLKISKEKVDECYNAILHLTNANNYGHKRKYEEIPGSPSGVIDAVFSSDGSNDSWTVGASSYSTSEPVFKKTKNQGQNMNLSPINRVIVGILATATSP*