AlfalfaGEDB | Msa0051560

M. sativa cultivar zhongmu-4 / Msa0051560

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051560	KEH40053.1	88.462	104	12	0	1	104	1	104	8.55e-63	196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051560	A0A072VF29	88.462	104	12	0	1	104	1	104	4.08e-63	196

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0051560	Msa0051680	0.937297	4.357617e-98	-8.615850e-47
Msa0051560	Msa0101910	0.933348	2.151302e-95	-8.615850e-47
Msa0051560	Msa0146140	0.924261	8.919272e-90	-8.615850e-47
Msa0051560	Msa0817460	0.814916	1.207259e-51	-8.615850e-47
Msa0051560	Msa0936060	0.803965	2.709228e-49	-8.615850e-47
Msa0051560	Msa0972960	0.803030	4.234222e-49	-8.615850e-47
Msa0051560	Msa1376970	0.922200	1.339314e-88	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051560	MtrunA17_Chr1g0153841	88.462	104	12	0	1	104	1	104	7.87e-67	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 26 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGGATCCAGGTCATAGTCC+CGG	0.595399	1_2:-5664411	Msa0051560:CDS
ATGAAAACATAGTCATTTGG+CGG	0.581045	1_2:-5664530	Msa0051560:CDS
CACCTAATTAATTAACGCCT+TGG	0.435077	1_2:+5664342	None:intergenic
CATATGAAAACATAGTCATT+TGG	0.452470	1_2:-5664533	Msa0051560:CDS
CCAGCACCGGGACTATGACC+TGG	0.585779	1_2:+5664405	None:intergenic
CCAGGTCATAGTCCCGGTGC+TGG	0.508743	1_2:-5664405	Msa0051560:CDS
CGTCGCCAACATGTGGATTC+TGG	0.218060	1_2:+5664466	None:intergenic
CTAATTAATTAACGCCTTGG+AGG	0.484883	1_2:+5664345	None:intergenic
GAAAAGTAGAATTGAACACA+AGG	0.697977	1_2:+5664640	None:intergenic
GAGGCACGTTGGTGTCCATG+GGG	0.682384	1_2:+5664364	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAGTAGAATTGAACACA+AGG	+	chr1_2:5664370-5664389	None:intergenic	30.0%
ATGAAAACATAGTCATTTGG+CGG	-	chr1_2:5664477-5664496	Msa0051560:CDS	30.0%
TATGTTTCTCAACCCTTGCT+AGG	-	chr1_2:5664411-5664430	Msa0051560:CDS	40.0%
GATTCCCAGAATCCACATGT+TGG	-	chr1_2:5664536-5664555	Msa0051560:CDS	45.0%
GTCGCCAACATGTGGATTCT+GGG	+	chr1_2:5664543-5664562	None:intergenic	50.0%
TGGGGATTGTTGGGGTTGAA+TGG	+	chr1_2:5664628-5664647	None:intergenic	50.0%
TTCAACCCCAACAATCCCCA+TGG	-	chr1_2:5664628-5664647	Msa0051560:CDS	50.0%
TGGTGTCCATGGGGATTGTT+GGG	+	chr1_2:5664637-5664656	None:intergenic	50.0%
CGTCGCCAACATGTGGATTC+TGG	+	chr1_2:5664544-5664563	None:intergenic	55.0%
TCAGCTTCGTCGCCAACATG+TGG	+	chr1_2:5664551-5664570	None:intergenic	55.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	5664353	5664676	5664353	ID=Msa0051560;Name=Msa0051560
chr1_2	mRNA	5664353	5664676	5664353	ID=Msa0051560-mRNA-1;Parent=Msa0051560;Name=Msa0051560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|107
chr1_2	exon	5664353	5664676	5664353	ID=Msa0051560-mRNA-1:exon:1748;Parent=Msa0051560-mRNA-1
chr1_2	CDS	5664353	5664676	5664353	ID=Msa0051560-mRNA-1:cds;Parent=Msa0051560-mRNA-1

Gene Sequence	>Msa0051560 ATGGCAAATTCTAACCTTGTGTTCAATTCTACTTTTCTAGTCTTAATTATTTTCAATTTATGTTTCTCAACCCTTGCTAGGCCCCTAGTAAAAAGAGAGAACAAATTAGAGTACACATCAACATATGAAAACATAGTCATTTGGCGGCGTAACATTTTAGAGAAAGAAGCTGCGACAACATTAGATTCCCAGAATCCACATGTTGGCGACGAAGCTGAAAAATTGATCGACGATTTTCGACCAACGGATCCAGGTCATAGTCCCGGTGCTGGCCATTCAACCCCAACAATCCCCATGGACACCAACGTGCCTCCAAGGCGTTAA
Protein sequence	>Msa0051560 MANSNLVFNSTFLVLIIFNLCFSTLARPLVKRENKLEYTSTYENIVIWRRNILEKEAATTLDSQNPHVGDEAEKLIDDFRPTDPGHSPGAGHSTPTIPMDTNVPPRR*