AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817460 MtrunA17_Chr5g0436191 98.578 422 6 0 1 422 1 422 0.0 861
Msa0817460 MtrunA17_Chr3g0112781 71.264 435 105 6 1 416 1 434 0.0 623
Msa0817460 MtrunA17_Chr1g0154851 52.344 384 163 8 1 378 1 370 1.23e-135 394
Msa0817460 MtrunA17_Chr3g0141481 52.442 389 157 11 1 378 8 379 5.11e-134 390
Msa0817460 MtrunA17_Chr5g0403841 50.262 382 165 6 1 373 10 375 1.79e-131 383
Msa0817460 MtrunA17_Chr1g0207581 43.627 408 210 7 14 419 74 463 4.49e-113 339
Msa0817460 MtrunA17_Chr1g0152841 47.950 317 157 2 58 374 113 421 1.15e-107 325
Msa0817460 MtrunA17_Chr3g0134521 46.906 307 155 2 68 374 93 391 7.91e-103 311
Msa0817460 MtrunA17_Chr2g0309941 42.857 371 194 6 14 373 17 380 2.59e-98 299
Msa0817460 MtrunA17_Chr1g0176101 40.938 320 169 4 58 376 50 350 2.23e-82 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817460 AT5G05840.1 61.827 427 143 6 1 408 1 426 0.0 514
Msa0817460 AT3G55720.1 53.935 432 175 11 1 409 1 431 1.48e-147 427
Msa0817460 AT1G75160.1 52.239 402 158 9 1 377 3 395 2.63e-131 384
Msa0817460 AT5G66740.1 50.526 380 169 6 1 374 1 367 4.23e-131 382
Msa0817460 AT3G19540.1 49.684 316 150 2 59 374 129 435 1.00e-107 327
Msa0817460 AT1G49840.1 41.063 414 223 6 6 409 78 480 3.54e-107 325
Msa0817460 AT1G27690.1 43.717 382 198 6 6 378 41 414 2.46e-105 318
Msa0817460 AT1G79420.1 38.978 372 198 8 29 376 36 402 2.29e-90 280
Msa0817460 AT5G06610.1 41.121 321 168 8 59 376 51 353 3.36e-78 247

Find 107 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAGAGTTGGTGGTTTC+TGG 0.051533 5_3:-52761553 Msa0817460:CDS
CTGAAACTGAATTCATATTT+TGG 0.078513 5_3:-52759917 Msa0817460:CDS
AATAGATTGGCAGTGGATTT+TGG 0.183170 5_3:+52760143 None:intergenic
AGAAAGACTTTGGAGATAAA+AGG 0.226457 5_3:+52762502 None:intergenic
GGCATCATTCTCATGCTTCT+AGG 0.228218 5_3:-52761477 Msa0817460:CDS
ATCATCACTCGTAACATTAA+AGG 0.273706 5_3:-52762133 Msa0817460:CDS
CAGCCAAAGAACTGGACTTT+TGG 0.274210 5_3:-52759979 Msa0817460:CDS
TTGAAGAGAGATGAAGAAAA+AGG 0.287471 5_3:-52759684 Msa0817460:CDS
CAACTCTTGCTTGGTGTTGT+AGG 0.287651 5_3:-52762199 Msa0817460:CDS
GAACCAAAAGTCCAGTTCTT+TGG 0.292412 5_3:+52759976 None:intergenic
TAATATTAAAGGGTTGTCTT+TGG 0.310573 5_3:-52759730 Msa0817460:CDS
GATGATCTTGATTCATTGTT+TGG 0.312116 5_3:+52762250 None:intergenic
TTGTTGATGAAAATATCTTC+TGG 0.344725 5_3:+52762313 None:intergenic
AGTAGCAACATAGAAATAAT+TGG 0.366580 5_3:-52760023 Msa0817460:CDS
TAGCACATTGTGGGAAAACT+TGG 0.371373 5_3:-52759839 Msa0817460:CDS
CAAGGCCATCCTCATGATAA+AGG 0.376628 5_3:+52762359 None:intergenic
AATAATGAGAATATGTATCT+TGG 0.376796 5_3:+52762455 None:intergenic
GGCTATTTCAGCCAAAGAAC+TGG 0.377671 5_3:-52759987 Msa0817460:CDS
CACATCAATAGCAGCTACTT+TGG 0.378200 5_3:+52759593 None:intergenic
GCATCATTCTCATGCTTCTA+GGG 0.380106 5_3:-52761476 Msa0817460:CDS
TTCATACAATAGAAAGACTT+TGG 0.384506 5_3:+52762492 None:intergenic
TATCACTAGTTCTGTTGGTT+TGG 0.390856 5_3:-52759507 Msa0817460:three_prime_UTR
GGGACCTCAGAGTTTGTTGC+AGG 0.391747 5_3:-52761682 Msa0817460:CDS
CAATGGGTGAAGTGAGAATA+GGG 0.392256 5_3:-52761702 Msa0817460:CDS
GTTTAGAGTTGGTGGTTTCT+GGG 0.395885 5_3:-52761552 Msa0817460:CDS
AGAGTTTGTTGCAGGGGAAG+GGG 0.397248 5_3:-52761674 Msa0817460:CDS
GGTGGATATGAAAGAAGAGT+TGG 0.398116 5_3:-52761614 Msa0817460:CDS
AAGAGTTGAATATTTGTGTT+TGG 0.407599 5_3:+52762214 None:intergenic
GCCACTTAAACGTTTACTTC+AGG 0.407710 5_3:-52761443 Msa0817460:intron
CTTGTCCTTGAATGATTCTC+AGG 0.407841 5_3:+52759789 None:intergenic
TGGGTCACTTTATCAAGGTT+TGG 0.410083 5_3:-52759819 Msa0817460:CDS
AACTCTAAACACCACAATTC+TGG 0.410084 5_3:+52761565 None:intergenic
GGTTTGTACTCATTGGTGAT+AGG 0.410664 5_3:+52762157 None:intergenic
TTTAATGTTACGAGTGATGA+TGG 0.411678 5_3:+52762135 None:intergenic
GGACAAGTATAAATGAGGTT+TGG 0.421027 5_3:-52759773 Msa0817460:CDS
TACTCATTGGTGATAGGAAA+AGG 0.430614 5_3:+52762163 None:intergenic
TCAGAGTTTGTTGCAGGGGA+AGG 0.438376 5_3:-52761676 Msa0817460:CDS
CAGAGTTTGTTGCAGGGGAA+GGG 0.438430 5_3:-52761675 Msa0817460:CDS
TGTGTCATCACATCATATTT+AGG 0.440858 5_3:+52762549 None:intergenic
ACAAATATTCAACTCTTGCT+TGG 0.448693 5_3:-52762208 Msa0817460:CDS
ACCTGAAGTAAACGTTTAAG+TGG 0.449339 5_3:+52761442 None:intergenic
TGTTGATGAAAATATCTTCT+GGG 0.454937 5_3:+52762314 None:intergenic
GAAAGACTTTGGAGATAAAA+GGG 0.457286 5_3:+52762503 None:intergenic
TGTAATATCACTAGTTCTGT+TGG 0.461192 5_3:-52759512 Msa0817460:three_prime_UTR
GCAATGGGTGAAGTGAGAAT+AGG 0.466333 5_3:-52761703 Msa0817460:CDS
GTGATAGGAAAAGGAATCAA+TGG 0.468167 5_3:+52762172 None:intergenic
TGTTGAGTTGTTGAATAGAT+TGG 0.471791 5_3:+52760130 None:intergenic
ATTGTGGTGTTTAGAGTTGG+TGG 0.473766 5_3:-52761560 Msa0817460:CDS
ATAATGAGAATATGTATCTT+GGG 0.479240 5_3:+52762456 None:intergenic
GAACTTCTAGCACTGTTTCA+AGG 0.479426 5_3:+52762341 None:intergenic
AAACTTGGGTCACTTTATCA+AGG 0.484471 5_3:-52759824 Msa0817460:CDS
CATACAAGACTATAGAATAG+TGG 0.484564 5_3:-52759874 Msa0817460:CDS
GCTTCTTGTTTGTAATGAAG+TGG 0.484584 5_3:+52760046 None:intergenic
GAGTTTGTTGCAGGGGAAGG+GGG 0.487639 5_3:-52761673 Msa0817460:CDS
AAAATTAGTGCAGGGAGTGA+TGG 0.488027 5_3:-52761526 Msa0817460:CDS
GATGGTGAAGAAAGTGAAGA+AGG 0.494517 5_3:-52761635 Msa0817460:CDS
AAATGAGGTTTGGAAAATTG+AGG 0.496792 5_3:-52759763 Msa0817460:CDS
GTGGATATGAAAGAAGAGTT+GGG 0.501576 5_3:-52761613 Msa0817460:CDS
TTCAAGGACAAGTATAAATG+AGG 0.502582 5_3:-52759778 Msa0817460:CDS
TCTGGGTACAAAATTAGTGC+AGG 0.503450 5_3:-52761535 Msa0817460:CDS
GCCATCCTCATGATAAAGGT+TGG 0.509678 5_3:+52762363 None:intergenic
AGTAAACGTTTAAGTGGCCT+AGG 0.518850 5_3:+52761448 None:intergenic
CCATCCTCATGATAAAGGTT+GGG 0.519135 5_3:+52762364 None:intergenic
GATGATGGGTTTGTACTCAT+TGG 0.529124 5_3:+52762150 None:intergenic
GTATTCAAATAGCACATTGT+GGG 0.530481 5_3:-52759848 Msa0817460:CDS
GTTGAAAGTATGTATGCAAT+GGG 0.538137 5_3:-52761718 Msa0817460:CDS
TTTGTCTAGTTAAGATCGAA+AGG 0.538678 5_3:+52762661 None:intergenic
AAAACAATATGTGGCAGCTG+TGG 0.539484 5_3:-52761764 Msa0817460:CDS
CCCAACCTTTATCATGAGGA+TGG 0.540030 5_3:-52762364 Msa0817460:CDS
GTTGTTGAATAGATTGGCAG+TGG 0.542030 5_3:+52760136 None:intergenic
GATGAAAATATCTTCTGGGA+TGG 0.548098 5_3:+52762318 None:intergenic
TGCAGGGAGTGATGGAAAAG+TGG 0.552240 5_3:-52761518 Msa0817460:CDS
GTGATGGAAAAGTGGCTTGG+AGG 0.553808 5_3:-52761510 Msa0817460:CDS
ATGAAAATATCTTCTGGGAT+GGG 0.555387 5_3:+52762319 None:intergenic
AGAATTGTGGTGTTTAGAGT+TGG 0.558165 5_3:-52761563 Msa0817460:CDS
TTGCTTCATGTTCTTCCATG+TGG 0.558177 5_3:+52762282 None:intergenic
GGAGTGATGGAAAAGTGGCT+TGG 0.558565 5_3:-52761513 Msa0817460:CDS
GGTGAAGAAAGTGAAGAAGG+TGG 0.561830 5_3:-52761632 Msa0817460:CDS
GGGTGTGAATAGTAAGAAGA+TGG 0.564348 5_3:-52761653 Msa0817460:CDS
CATCATTCTCATGCTTCTAG+GGG 0.571410 5_3:-52761475 Msa0817460:CDS
TTGTCCCAACCTTTATCATG+AGG 0.572543 5_3:-52762368 Msa0817460:CDS
AAACAATATGTGGCAGCTGT+GGG 0.574423 5_3:-52761763 Msa0817460:CDS
AAGGACCTGAGAATCATTCA+AGG 0.576245 5_3:-52759794 Msa0817460:CDS
TTAATGTTACGAGTGATGAT+GGG 0.585219 5_3:+52762136 None:intergenic
GTATATAGTAAAACAATATG+TGG 0.585668 5_3:-52761773 Msa0817460:CDS
TGTTGAAAGTATGTATGCAA+TGG 0.588575 5_3:-52761719 Msa0817460:CDS
GACCTCAGAGTTTGTTGCAG+GGG 0.589486 5_3:-52761680 Msa0817460:CDS
GGTATTCAAATAGCACATTG+TGG 0.592853 5_3:-52759849 Msa0817460:CDS
TCATCTCTCTTCAAATCACT+AGG 0.595333 5_3:+52759693 None:intergenic
TGGCTTGGAGGCAAACACCT+TGG 0.599300 5_3:-52761498 Msa0817460:CDS
CAAAGTAGCTGCTATTGATG+TGG 0.599483 5_3:-52759592 Msa0817460:CDS
AGCACATTGTGGGAAAACTT+GGG 0.600682 5_3:-52759838 Msa0817460:CDS
ACTTTATCAAGGTTTGGTGA+AGG 0.603544 5_3:-52759813 Msa0817460:CDS
CATGGAAGAACATGAAGCAA+TGG 0.606163 5_3:-52762279 Msa0817460:CDS
CTGGGTACAAAATTAGTGCA+GGG 0.608598 5_3:-52761534 Msa0817460:CDS
ATGCTTCTAGGGGTCCACCT+AGG 0.608662 5_3:-52761465 Msa0817460:CDS
CAATATGTGGCAGCTGTGGG+AGG 0.614293 5_3:-52761760 Msa0817460:CDS
TTCAACAACTCAACATGCAT+AGG 0.619833 5_3:-52760122 Msa0817460:CDS
CAAGACTATAGAATAGTGGA+TGG 0.626381 5_3:-52759870 Msa0817460:CDS
GAAGCATGAGAATGATGCCA+AGG 0.632801 5_3:+52761481 None:intergenic
GGACCTCAGAGTTTGTTGCA+GGG 0.634886 5_3:-52761681 Msa0817460:CDS
TCTCTCTTCAAATCACTAGG+AGG 0.655690 5_3:+52759696 None:intergenic
TCAACAAGAGTGGAACCACA+TGG 0.660301 5_3:-52762297 Msa0817460:CDS
AAACGTTTAAGTGGCCTAGG+TGG 0.667507 5_3:+52761451 None:intergenic
TTCCCCTGCAACAAACTCTG+AGG 0.671875 5_3:+52761678 None:intergenic
GATATGAAAGAAGAGTTGGG+AGG 0.679988 5_3:-52761610 Msa0817460:CDS
GGCAAAAGAGACCAGAATTG+TGG 0.686509 5_3:-52761576 Msa0817460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTATTATTA+GGG + chr5_3:52760802-52760821 None:intergenic 0.0%
!! TTATTATTATTATTATTATT+AGG + chr5_3:52760803-52760822 None:intergenic 0.0%
!! ATAATAATAATAATAATAAT+AGG - chr5_3:52760804-52760823 Msa0817460:intron 0.0%
!! GTTGTATAAAAAAATATTAA+AGG - chr5_3:52760256-52760275 Msa0817460:intron 10.0%
!!! AATTATTTTATGTATTTTGA+AGG - chr5_3:52760323-52760342 Msa0817460:intron 10.0%
!!! TCATTTTATTTTTATAACAA+TGG - chr5_3:52760958-52760977 Msa0817460:intron 10.0%
!!! AAGTTGATTTTAATATTAAA+GGG - chr5_3:52762395-52762414 Msa0817460:exon 10.0%
!!! ATTTTATACTTACAATGTTA+TGG + chr5_3:52760028-52760047 None:intergenic 15.0%
!!! TTCTCAAAATTTTATCTAAA+TGG - chr5_3:52760212-52760231 Msa0817460:intron 15.0%
!! TATAACAGAAAATATAAGAT+TGG - chr5_3:52761144-52761163 Msa0817460:intron 15.0%
!!! GAAGTTGATTTTAATATTAA+AGG - chr5_3:52762394-52762413 Msa0817460:exon 15.0%
!! ATAATGAGAATATGTATCTT+GGG + chr5_3:52759682-52759701 None:intergenic 20.0%
!! AATAATGAGAATATGTATCT+TGG + chr5_3:52759683-52759702 None:intergenic 20.0%
!!! TTTTGTCTAATTAAAAGTTG+TGG + chr5_3:52760107-52760126 None:intergenic 20.0%
!!! TATTTTATGTATTTTGAAGG+AGG - chr5_3:52760326-52760345 Msa0817460:intron 20.0%
!! GTATATAGTAAAACAATATG+TGG - chr5_3:52760362-52760381 Msa0817460:intron 20.0%
!! ACCTTATGTAAAAAAGATAA+GGG + chr5_3:52761115-52761134 None:intergenic 20.0%
!!! ATTTCCAAATTGTTTTTTCA+TGG - chr5_3:52761263-52761282 Msa0817460:intron 20.0%
!! ATTTCCATGAAAAAACAATT+TGG + chr5_3:52761270-52761289 None:intergenic 20.0%
!!! ATTATTGTCTTAATTTGATC+AGG - chr5_3:52761961-52761980 Msa0817460:intron 20.0%
!!! TTATTGTCTTAATTTGATCA+GGG - chr5_3:52761962-52761981 Msa0817460:intron 20.0%
!!! AGATTTTAGTTTAATCAAGT+TGG + chr5_3:52762197-52762216 None:intergenic 20.0%
!!! TGAAACTGAATTCATATTTT+GGG - chr5_3:52762219-52762238 Msa0817460:CDS 20.0%
! TTCATACAATAGAAAGACTT+TGG + chr5_3:52759646-52759665 None:intergenic 25.0%
!! TGTTGATGAAAATATCTTCT+GGG + chr5_3:52759824-52759843 None:intergenic 25.0%
!! TTGTTGATGAAAATATCTTC+TGG + chr5_3:52759825-52759844 None:intergenic 25.0%
! AAGAGTTGAATATTTGTGTT+TGG + chr5_3:52759924-52759943 None:intergenic 25.0%
! TTATGAATTTAAGAAACTCG+TGG + chr5_3:52760190-52760209 None:intergenic 25.0%
!!! TCATTGATTCATTAAAACAC+CGG - chr5_3:52760767-52760786 Msa0817460:intron 25.0%
!!! TCCCTTATCTTTTTTACATA+AGG - chr5_3:52761111-52761130 Msa0817460:intron 25.0%
! GACCTTATGTAAAAAAGATA+AGG + chr5_3:52761116-52761135 None:intergenic 25.0%
! ACAATTTAATAGCTAATGCA+AGG - chr5_3:52761340-52761359 Msa0817460:intron 25.0%
!! TAATTTTGTCTAAGTTCAAG+TGG + chr5_3:52761612-52761631 None:intergenic 25.0%
! CTATGATACACTTATTTGAA+TGG + chr5_3:52761643-52761662 None:intergenic 25.0%
!! CTTGTCACATATTTTTCTTT+TGG - chr5_3:52761786-52761805 Msa0817460:CDS 25.0%
!!! ACATATTTTTCTTTTGGCTA+TGG - chr5_3:52761792-52761811 Msa0817460:CDS 25.0%
!!! CATATTTTTCTTTTGGCTAT+GGG - chr5_3:52761793-52761812 Msa0817460:CDS 25.0%
! GTATAATGCATATCAAAAGA+GGG - chr5_3:52761822-52761841 Msa0817460:intron 25.0%
! TATAATGCATATCAAAAGAG+GGG - chr5_3:52761823-52761842 Msa0817460:intron 25.0%
! AGTAGCAACATAGAAATAAT+TGG - chr5_3:52762112-52762131 Msa0817460:intron 25.0%
!! CTGAAACTGAATTCATATTT+TGG - chr5_3:52762218-52762237 Msa0817460:CDS 25.0%
! TAATATTAAAGGGTTGTCTT+TGG - chr5_3:52762405-52762424 Msa0817460:five_prime_UTR 25.0%
!! GAAGCAGATTGAATTTTATA+TGG + chr5_3:52762505-52762524 None:intergenic 25.0%
TTTGTCTAGTTAAGATCGAA+AGG + chr5_3:52759477-52759496 None:intergenic 30.0%
TGTGTCATCACATCATATTT+AGG + chr5_3:52759589-52759608 None:intergenic 30.0%
! GAAAGACTTTGGAGATAAAA+GGG + chr5_3:52759635-52759654 None:intergenic 30.0%
! AGAAAGACTTTGGAGATAAA+AGG + chr5_3:52759636-52759655 None:intergenic 30.0%
!! ATGAAAATATCTTCTGGGAT+GGG + chr5_3:52759819-52759838 None:intergenic 30.0%
! GATATTTTCATCAACAAGAG+TGG - chr5_3:52759828-52759847 Msa0817460:CDS 30.0%
GATGATCTTGATTCATTGTT+TGG + chr5_3:52759888-52759907 None:intergenic 30.0%
ACAAATATTCAACTCTTGCT+TGG - chr5_3:52759927-52759946 Msa0817460:CDS 30.0%
TTAATGTTACGAGTGATGAT+GGG + chr5_3:52760002-52760021 None:intergenic 30.0%
TTTAATGTTACGAGTGATGA+TGG + chr5_3:52760003-52760022 None:intergenic 30.0%
ATCATCACTCGTAACATTAA+AGG - chr5_3:52760002-52760021 Msa0817460:CDS 30.0%
!! AAAACGCAAGTGTTTTTACT+TGG - chr5_3:52760123-52760142 Msa0817460:CDS 30.0%
! TGTTGAAAGTATGTATGCAA+TGG - chr5_3:52760416-52760435 Msa0817460:intron 30.0%
! GTTGAAAGTATGTATGCAAT+GGG - chr5_3:52760417-52760436 Msa0817460:intron 30.0%
ATTATTAGGGTTATGCTAAC+CGG + chr5_3:52760789-52760808 None:intergenic 30.0%
AAGGGAAAACAAAGTGAAAT+GGG + chr5_3:52761097-52761116 None:intergenic 30.0%
TAAGGGAAAACAAAGTGAAA+TGG + chr5_3:52761098-52761117 None:intergenic 30.0%
!!! TGACCTTTTTCAAATGAGAA+GGG + chr5_3:52761243-52761262 None:intergenic 30.0%
!!! TTGACCTTTTTCAAATGAGA+AGG + chr5_3:52761244-52761263 None:intergenic 30.0%
AAATGTAGACCTTCACTTTA+TGG + chr5_3:52761306-52761325 None:intergenic 30.0%
! ACAAGCATTGTTGACATTTA+GGG + chr5_3:52761413-52761432 None:intergenic 30.0%
ACTATGATTTAAAGATCGTG+CGG + chr5_3:52761575-52761594 None:intergenic 30.0%
GGTATAATGCATATCAAAAG+AGG - chr5_3:52761821-52761840 Msa0817460:intron 30.0%
TCAAAAGAGGGGAATATAAA+AGG - chr5_3:52761834-52761853 Msa0817460:intron 30.0%
! TGTTGAGTTGTTGAATAGAT+TGG + chr5_3:52762008-52762027 None:intergenic 30.0%
! ATAATTGGTCACACAGTTTT+AGG - chr5_3:52762127-52762146 Msa0817460:CDS 30.0%
CATACAAGACTATAGAATAG+TGG - chr5_3:52762261-52762280 Msa0817460:CDS 30.0%
GTATTCAAATAGCACATTGT+GGG - chr5_3:52762287-52762306 Msa0817460:CDS 30.0%
TTCAAGGACAAGTATAAATG+AGG - chr5_3:52762357-52762376 Msa0817460:CDS 30.0%
AAATGAGGTTTGGAAAATTG+AGG - chr5_3:52762372-52762391 Msa0817460:CDS 30.0%
TTGAAGAGAGATGAAGAAAA+AGG - chr5_3:52762451-52762470 Msa0817460:five_prime_UTR 30.0%
!! TGTAATATCACTAGTTCTGT+TGG - chr5_3:52762623-52762642 Msa0817460:five_prime_UTR 30.0%
! GATGAAAATATCTTCTGGGA+TGG + chr5_3:52759820-52759839 None:intergenic 35.0%
GTGATAGGAAAAGGAATCAA+TGG + chr5_3:52759966-52759985 None:intergenic 35.0%
! TACTCATTGGTGATAGGAAA+AGG + chr5_3:52759975-52759994 None:intergenic 35.0%
! GATTTTCTCGAAGCTTTTTG+TGG - chr5_3:52760234-52760253 Msa0817460:intron 35.0%
GTGGATATGAAAGAAGAGTT+GGG - chr5_3:52760522-52760541 Msa0817460:intron 35.0%
AACTCTAAACACCACAATTC+TGG + chr5_3:52760573-52760592 None:intergenic 35.0%
! AGAATTGTGGTGTTTAGAGT+TGG - chr5_3:52760572-52760591 Msa0817460:intron 35.0%
ACCTGAAGTAAACGTTTAAG+TGG + chr5_3:52760696-52760715 None:intergenic 35.0%
! TAACAATGGACTCAATTCCA+TGG - chr5_3:52760972-52760991 Msa0817460:intron 35.0%
CAAATCAATTAGGCAACGTT+TGG + chr5_3:52761189-52761208 None:intergenic 35.0%
GGGGTAGATTCAAATCAATT+AGG + chr5_3:52761199-52761218 None:intergenic 35.0%
TTATCCCTACCATAAAGTGA+AGG - chr5_3:52761294-52761313 Msa0817460:intron 35.0%
TAGACCTTCACTTTATGGTA+GGG + chr5_3:52761301-52761320 None:intergenic 35.0%
! CAAGCATTGTTGACATTTAG+GGG + chr5_3:52761412-52761431 None:intergenic 35.0%
! GACAAGCATTGTTGACATTT+AGG + chr5_3:52761414-52761433 None:intergenic 35.0%
CTATGATTTAAAGATCGTGC+GGG + chr5_3:52761574-52761593 None:intergenic 35.0%
!! ATGTCGATTTATTGTTCAGC+CGG - chr5_3:52761666-52761685 Msa0817460:CDS 35.0%
! TGGTTTGCAAAATGTTGTGT+TGG - chr5_3:52761713-52761732 Msa0817460:CDS 35.0%
AAAGAGGGGAATATAAAAGG+AGG - chr5_3:52761837-52761856 Msa0817460:intron 35.0%
!! AATAGATTGGCAGTGGATTT+TGG + chr5_3:52761995-52762014 None:intergenic 35.0%
TTCAACAACTCAACATGCAT+AGG - chr5_3:52762013-52762032 Msa0817460:intron 35.0%
! GCTTCTTGTTTGTAATGAAG+TGG + chr5_3:52762092-52762111 None:intergenic 35.0%
! CAAGACTATAGAATAGTGGA+TGG - chr5_3:52762265-52762284 Msa0817460:CDS 35.0%
GGTATTCAAATAGCACATTG+TGG - chr5_3:52762286-52762305 Msa0817460:CDS 35.0%
! AAACTTGGGTCACTTTATCA+AGG - chr5_3:52762311-52762330 Msa0817460:CDS 35.0%
!! ACTTTATCAAGGTTTGGTGA+AGG - chr5_3:52762322-52762341 Msa0817460:CDS 35.0%
GGACAAGTATAAATGAGGTT+TGG - chr5_3:52762362-52762381 Msa0817460:CDS 35.0%
TCATCTCTCTTCAAATCACT+AGG + chr5_3:52762445-52762464 None:intergenic 35.0%
!! TATCACTAGTTCTGTTGGTT+TGG - chr5_3:52762628-52762647 Msa0817460:five_prime_UTR 35.0%
TTGTCCCAACCTTTATCATG+AGG - chr5_3:52759767-52759786 Msa0817460:CDS 40.0%
CCATCCTCATGATAAAGGTT+GGG + chr5_3:52759774-52759793 None:intergenic 40.0%
GAACTTCTAGCACTGTTTCA+AGG + chr5_3:52759797-52759816 None:intergenic 40.0%
TTGCTTCATGTTCTTCCATG+TGG + chr5_3:52759856-52759875 None:intergenic 40.0%
CATGGAAGAACATGAAGCAA+TGG - chr5_3:52759856-52759875 Msa0817460:CDS 40.0%
! GGTTTGTACTCATTGGTGAT+AGG + chr5_3:52759981-52760000 None:intergenic 40.0%
!! GATGATGGGTTTGTACTCAT+TGG + chr5_3:52759988-52760007 None:intergenic 40.0%
AAAACAATATGTGGCAGCTG+TGG - chr5_3:52760371-52760390 Msa0817460:intron 40.0%
AAACAATATGTGGCAGCTGT+GGG - chr5_3:52760372-52760391 Msa0817460:intron 40.0%
CAATGGGTGAAGTGAGAATA+GGG - chr5_3:52760433-52760452 Msa0817460:intron 40.0%
GGGTGTGAATAGTAAGAAGA+TGG - chr5_3:52760482-52760501 Msa0817460:intron 40.0%
GATGGTGAAGAAAGTGAAGA+AGG - chr5_3:52760500-52760519 Msa0817460:intron 40.0%
GGTGGATATGAAAGAAGAGT+TGG - chr5_3:52760521-52760540 Msa0817460:intron 40.0%
GATATGAAAGAAGAGTTGGG+AGG - chr5_3:52760525-52760544 Msa0817460:intron 40.0%
! ATTGTGGTGTTTAGAGTTGG+TGG - chr5_3:52760575-52760594 Msa0817460:intron 40.0%
!! TGTTTAGAGTTGGTGGTTTC+TGG - chr5_3:52760582-52760601 Msa0817460:intron 40.0%
!! GTTTAGAGTTGGTGGTTTCT+GGG - chr5_3:52760583-52760602 Msa0817460:intron 40.0%
TCTGGGTACAAAATTAGTGC+AGG - chr5_3:52760600-52760619 Msa0817460:intron 40.0%
CTGGGTACAAAATTAGTGCA+GGG - chr5_3:52760601-52760620 Msa0817460:intron 40.0%
AAAATTAGTGCAGGGAGTGA+TGG - chr5_3:52760609-52760628 Msa0817460:intron 40.0%
GCATCATTCTCATGCTTCTA+GGG - chr5_3:52760659-52760678 Msa0817460:intron 40.0%
CATCATTCTCATGCTTCTAG+GGG - chr5_3:52760660-52760679 Msa0817460:intron 40.0%
AGTAAACGTTTAAGTGGCCT+AGG + chr5_3:52760690-52760709 None:intergenic 40.0%
GCCACTTAAACGTTTACTTC+AGG - chr5_3:52760692-52760711 Msa0817460:intron 40.0%
! ATTCTCTCTGGTGCCAATTT+GGG - chr5_3:52760856-52760875 Msa0817460:intron 40.0%
CAATTAGGCAACGTTTGGTT+AGG + chr5_3:52761184-52761203 None:intergenic 40.0%
AATCTACCCCACCTAAAACT+AGG - chr5_3:52761209-52761228 Msa0817460:intron 40.0%
!!! CCTTTTTCAAATGAGAAGGG+AGG + chr5_3:52761240-52761259 None:intergenic 40.0%
CCTCCCTTCTCATTTGAAAA+AGG - chr5_3:52761237-52761256 Msa0817460:intron 40.0%
GTAGACCTTCACTTTATGGT+AGG + chr5_3:52761302-52761321 None:intergenic 40.0%
AGGGGTCACAGCTAATTAAT+TGG + chr5_3:52761394-52761413 None:intergenic 40.0%
CCAAAATTTCCTGGTTCAAC+CGG + chr5_3:52761688-52761707 None:intergenic 40.0%
! CGGTTGAACCAGGAAATTTT+GGG - chr5_3:52761686-52761705 Msa0817460:CDS 40.0%
! GGTTGAACCAGGAAATTTTG+GGG - chr5_3:52761687-52761706 Msa0817460:CDS 40.0%
! GTTGAACCAGGAAATTTTGG+GGG - chr5_3:52761688-52761707 Msa0817460:CDS 40.0%
!! TTCTTTTGGCTATGGGACAA+CGG - chr5_3:52761800-52761819 Msa0817460:intron 40.0%
GTTGTTGAATAGATTGGCAG+TGG + chr5_3:52762002-52762021 None:intergenic 40.0%
GAACCAAAAGTCCAGTTCTT+TGG + chr5_3:52762162-52762181 None:intergenic 40.0%
TAGCACATTGTGGGAAAACT+TGG - chr5_3:52762296-52762315 Msa0817460:CDS 40.0%
AGCACATTGTGGGAAAACTT+GGG - chr5_3:52762297-52762316 Msa0817460:CDS 40.0%
! TGGGTCACTTTATCAAGGTT+TGG - chr5_3:52762316-52762335 Msa0817460:CDS 40.0%
AAGGACCTGAGAATCATTCA+AGG - chr5_3:52762341-52762360 Msa0817460:CDS 40.0%
CTTGTCCTTGAATGATTCTC+AGG + chr5_3:52762349-52762368 None:intergenic 40.0%
TCTCTCTTCAAATCACTAGG+AGG + chr5_3:52762442-52762461 None:intergenic 40.0%
GAGAGATGAAGAAAAAGGAG+TGG - chr5_3:52762456-52762475 Msa0817460:five_prime_UTR 40.0%
CACATCAATAGCAGCTACTT+TGG + chr5_3:52762545-52762564 None:intergenic 40.0%
CAAAGTAGCTGCTATTGATG+TGG - chr5_3:52762543-52762562 Msa0817460:five_prime_UTR 40.0%
CCCAACCTTTATCATGAGGA+TGG - chr5_3:52759771-52759790 Msa0817460:CDS 45.0%
GCCATCCTCATGATAAAGGT+TGG + chr5_3:52759775-52759794 None:intergenic 45.0%
CAAGGCCATCCTCATGATAA+AGG + chr5_3:52759779-52759798 None:intergenic 45.0%
TCAACAAGAGTGGAACCACA+TGG - chr5_3:52759838-52759857 Msa0817460:CDS 45.0%
!! CAACTCTTGCTTGGTGTTGT+AGG - chr5_3:52759936-52759955 Msa0817460:CDS 45.0%
!!! TATTTTGAAGGAGGCGTCGA+TGG - chr5_3:52760335-52760354 Msa0817460:intron 45.0%
GCAATGGGTGAAGTGAGAAT+AGG - chr5_3:52760432-52760451 Msa0817460:intron 45.0%
GGTGAAGAAAGTGAAGAAGG+TGG - chr5_3:52760503-52760522 Msa0817460:intron 45.0%
!! AGTTGGGAGGTTTTGTGTTG+TGG - chr5_3:52760538-52760557 Msa0817460:intron 45.0%
GGCAAAAGAGACCAGAATTG+TGG - chr5_3:52760559-52760578 Msa0817460:intron 45.0%
GAAGCATGAGAATGATGCCA+AGG + chr5_3:52760657-52760676 None:intergenic 45.0%
GGCATCATTCTCATGCTTCT+AGG - chr5_3:52760658-52760677 Msa0817460:intron 45.0%
AAACGTTTAAGTGGCCTAGG+TGG + chr5_3:52760687-52760706 None:intergenic 45.0%
GTCTCAAGTTCGATTCTCTC+TGG - chr5_3:52760844-52760863 Msa0817460:intron 45.0%
! GATTCTCTCTGGTGCCAATT+TGG - chr5_3:52760855-52760874 Msa0817460:intron 45.0%
GCTAAATAGCCCACCCAAAT+TGG + chr5_3:52760872-52760891 None:intergenic 45.0%
! CAATGGACTCAATTCCATGG+TGG - chr5_3:52760975-52760994 Msa0817460:intron 45.0%
!!! GAAGCACCTAGTTTTAGGTG+GGG + chr5_3:52761218-52761237 None:intergenic 45.0%
!!! GGAAGCACCTAGTTTTAGGT+GGG + chr5_3:52761219-52761238 None:intergenic 45.0%
!!! AGGAAGCACCTAGTTTTAGG+TGG + chr5_3:52761220-52761239 None:intergenic 45.0%
! CCGGTTGAACCAGGAAATTT+TGG - chr5_3:52761685-52761704 Msa0817460:CDS 45.0%
! GGCTATTTCAGCCAAAGAAC+TGG - chr5_3:52762148-52762167 Msa0817460:CDS 45.0%
! CAGCCAAAGAACTGGACTTT+TGG - chr5_3:52762156-52762175 Msa0817460:CDS 45.0%
!! GGACCTCAGAGTTTGTTGCA+GGG - chr5_3:52760454-52760473 Msa0817460:intron 50.0%
!! GACCTCAGAGTTTGTTGCAG+GGG - chr5_3:52760455-52760474 Msa0817460:intron 50.0%
TTCCCCTGCAACAAACTCTG+AGG + chr5_3:52760460-52760479 None:intergenic 50.0%
!! TCAGAGTTTGTTGCAGGGGA+AGG - chr5_3:52760459-52760478 Msa0817460:intron 50.0%
!! CAGAGTTTGTTGCAGGGGAA+GGG - chr5_3:52760460-52760479 Msa0817460:intron 50.0%
!! AGAGTTTGTTGCAGGGGAAG+GGG - chr5_3:52760461-52760480 Msa0817460:intron 50.0%
! TGCAGGGAGTGATGGAAAAG+TGG - chr5_3:52760617-52760636 Msa0817460:intron 50.0%
! GGAGTGATGGAAAAGTGGCT+TGG - chr5_3:52760622-52760641 Msa0817460:intron 50.0%
! GTGATGGAAAAGTGGCTTGG+AGG - chr5_3:52760625-52760644 Msa0817460:intron 50.0%
! TCTCTGGTGCCAATTTGGGT+GGG - chr5_3:52760860-52760879 Msa0817460:intron 50.0%
TGGACTCAATTCCATGGTGG+AGG - chr5_3:52760978-52760997 Msa0817460:intron 50.0%
! GGACTCAATTCCATGGTGGA+GGG - chr5_3:52760979-52760998 Msa0817460:intron 50.0%
! AATTTTCCAGCCCTCCACCA+TGG + chr5_3:52760992-52761011 None:intergenic 50.0%
!!! GGGAGGAAGCACCTAGTTTT+AGG + chr5_3:52761223-52761242 None:intergenic 50.0%
ATCAAAGGGATTGGAAGGGC+AGG + chr5_3:52761511-52761530 None:intergenic 50.0%
TGCCCTTCCAATCCCTTTGA+TGG - chr5_3:52761510-52761529 Msa0817460:CDS 50.0%
GCCCTTCCAATCCCTTTGAT+GGG - chr5_3:52761511-52761530 Msa0817460:CDS 50.0%
GCCCATCAAAGGGATTGGAA+GGG + chr5_3:52761515-52761534 None:intergenic 50.0%
CACCGTGAGATGATTGGAGT+CGG - chr5_3:52761535-52761554 Msa0817460:CDS 50.0%
!! ATCGTGCGGGTTAGATGCAA+GGG + chr5_3:52761561-52761580 None:intergenic 50.0%
ATTGTTCAGCCGGTTGAACC+AGG - chr5_3:52761676-52761695 Msa0817460:CDS 50.0%
!! ACCAGGAAATTTTGGGGGTG+TGG - chr5_3:52761693-52761712 Msa0817460:CDS 50.0%
ACCACACCCCCAAAATTTCC+TGG + chr5_3:52761697-52761716 None:intergenic 50.0%
CAATATGTGGCAGCTGTGGG+AGG - chr5_3:52760375-52760394 Msa0817460:intron 55.0%
!! GGGACCTCAGAGTTTGTTGC+AGG - chr5_3:52760453-52760472 Msa0817460:intron 55.0%
!! GAGTTTGTTGCAGGGGAAGG+GGG - chr5_3:52760462-52760481 Msa0817460:intron 55.0%
! TGGCTTGGAGGCAAACACCT+TGG - chr5_3:52760637-52760656 Msa0817460:intron 55.0%
! ATGCTTCTAGGGGTCCACCT+AGG - chr5_3:52760670-52760689 Msa0817460:intron 55.0%
! CTCTCTGGTGCCAATTTGGG+TGG - chr5_3:52760859-52760878 Msa0817460:intron 55.0%
! TCAATTCCATGGTGGAGGGC+TGG - chr5_3:52760983-52761002 Msa0817460:intron 55.0%
GGCCCATCAAAGGGATTGGA+AGG + chr5_3:52761516-52761535 None:intergenic 55.0%
TCTCACGGTGGCCCATCAAA+GGG + chr5_3:52761525-52761544 None:intergenic 55.0%
ATCTCACGGTGGCCCATCAA+AGG + chr5_3:52761526-52761545 None:intergenic 55.0%
ATGGGCCACCGTGAGATGAT+TGG - chr5_3:52761529-52761548 Msa0817460:CDS 55.0%
CGACTCCAATCATCTCACGG+TGG + chr5_3:52761537-52761556 None:intergenic 55.0%
! GGCCGACTCCAATCATCTCA+CGG + chr5_3:52761540-52761559 None:intergenic 55.0%
!! GATCGTGCGGGTTAGATGCA+AGG + chr5_3:52761562-52761581 None:intergenic 55.0%
CGGTGGCCCATCAAAGGGAT+TGG + chr5_3:52761520-52761539 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 52759464 52762693 52759464 ID=Msa0817460;Name=Msa0817460
chr5_3 mRNA 52759464 52762693 52759464 ID=Msa0817460-mRNA-1;Parent=Msa0817460;Name=Msa0817460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=241|1|1|1|0.66|0.5|4|90|422
chr5_3 exon 52759464 52760174 52759464 ID=Msa0817460-mRNA-1:exon:15862;Parent=Msa0817460-mRNA-1
chr5_3 exon 52761444 52761812 52761444 ID=Msa0817460-mRNA-1:exon:15861;Parent=Msa0817460-mRNA-1
chr5_3 exon 52762123 52762571 52762123 ID=Msa0817460-mRNA-1:exon:15860;Parent=Msa0817460-mRNA-1
chr5_3 exon 52762623 52762693 52762623 ID=Msa0817460-mRNA-1:exon:15859;Parent=Msa0817460-mRNA-1
chr5_3 five_prime_UTR 52762623 52762693 52762623 ID=Msa0817460-mRNA-1:five_prime_utr;Parent=Msa0817460-mRNA-1
chr5_3 five_prime_UTR 52762402 52762571 52762402 ID=Msa0817460-mRNA-1:five_prime_utr;Parent=Msa0817460-mRNA-1
chr5_3 CDS 52762123 52762401 52762123 ID=Msa0817460-mRNA-1:cds;Parent=Msa0817460-mRNA-1
chr5_3 CDS 52761444 52761812 52761444 ID=Msa0817460-mRNA-1:cds;Parent=Msa0817460-mRNA-1
chr5_3 CDS 52759554 52760174 52759554 ID=Msa0817460-mRNA-1:cds;Parent=Msa0817460-mRNA-1
chr5_3 three_prime_UTR 52759464 52759553 52759464 ID=Msa0817460-mRNA-1:three_prime_utr;Parent=Msa0817460-mRNA-1
Gene Sequence

>Msa0817460

ATGAAGAAGCTTTGTCCCAACCTTTATCATGAGGATGGCCTTGAAACAGTGCTAGAAGTTCCCATCCCAGAAGATATTTTCATCAACAAGAGTGGAACCACATGGAAGAACATGAAGCAATGGATGAAACCAAACAATGAATCAAGATCATCACGTTTTGAAGATCCAAACACAAATATTCAACTCTTGCTTGGTGTTGTAGGAGCTCCATTGATTCCTTTTCCTATCACCAATGAGTACAAACCCATCATCACTCGTAACATTAAAGGCCATAACATTGAGGCGTCGATGGCGAAGTATATAGTAAAACAATATGTGGCAGCTGTGGGAGGAGAGAGTGTTTTAAATAATGTTGAAAGTATGTATGCAATGGGTGAAGTGAGAATAGGGACCTCAGAGTTTGTTGCAGGGGAAGGGGGTGTGAATAGTAAGAAGATGGTGAAGAAAGTGAAGAAGGTGGATATGAAAGAAGAGTTGGGAGGTTTTGTGTTGTGGCAAAAGAGACCAGAATTGTGGTGTTTAGAGTTGGTGGTTTCTGGGTACAAAATTAGTGCAGGGAGTGATGGAAAAGTGGCTTGGAGGCAAACACCTTGGCATCATTCTCATGCTTCTAGGGGTCCACCTAGGCCACTTAAACGTTTACTTCAGGGTCTTGATCCAAAATCCACTGCCAATCTATTCAACAACTCAACATGCATAGGAGAGAAAGCAGTAAACAACGAAGAATGTTTCATTCTAAAACTTGAAGCAGAATCCACTTCATTACAAACAAGAAGCAGTAGCAACATAGAAATAATTGGTCACACAGTTTTAGGCTATTTCAGCCAAAGAACTGGACTTTTGGTTCAATTAGAAGACACCAACTTGATTAAACTAAAATCTTCTGAAACTGAATTCATATTTTGGGAAACAAATACAGAATCTCTCATACAAGACTATAGAATAGTGGATGGTATTCAAATAGCACATTGTGGGAAAACTTGGGTCACTTTATCAAGGTTTGGTGAAGGACCTGAGAATCATTCAAGGACAAGTATAAATGAGGTTTGGAAAATTGAGGAAGTTGATTTTAATATTAAAGGGTTGTCTTTGGATTGTTTTTTACCTCCTAGTGATTTGAAGAGAGATGAAGAAAAAGGAGTGGTTTCTGTTAGTAATGCTAAGTTACCATATAAAATTCAATCTGCTTCTTTTAAGATTAGTGCTTCCAAAGTAGCTGCTATTGATGTGGATGATTCATGTGTTAGTGATAACATTCAAGATATGTAG

Protein sequence

>Msa0817460

MKKLCPNLYHEDGLETVLEVPIPEDIFINKSGTTWKNMKQWMKPNNESRSSRFEDPNTNIQLLLGVVGAPLIPFPITNEYKPIITRNIKGHNIEASMAKYIVKQYVAAVGGESVLNNVESMYAMGEVRIGTSEFVAGEGGVNSKKMVKKVKKVDMKEELGGFVLWQKRPELWCLELVVSGYKISAGSDGKVAWRQTPWHHSHASRGPPRPLKRLLQGLDPKSTANLFNNSTCIGEKAVNNEECFILKLEAESTSLQTRSSSNIEIIGHTVLGYFSQRTGLLVQLEDTNLIKLKSSETEFIFWETNTESLIQDYRIVDGIQIAHCGKTWVTLSRFGEGPENHSRTSINEVWKIEEVDFNIKGLSLDCFLPPSDLKRDEEKGVVSVSNAKLPYKIQSASFKISASKVAAIDVDDSCVSDNIQDM*