Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052270 | XP_003589096.1 | 91.880 | 234 | 9 | 3 | 1 | 226 | 1 | 232 | 9.75e-138 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052270 | sp|Q96289|ZAT10_ARATH | 50.000 | 242 | 86 | 10 | 1 | 222 | 1 | 227 | 1.17e-56 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052270 | Q53EI9 | 91.880 | 234 | 9 | 3 | 1 | 226 | 1 | 232 | 4.66e-138 | 395 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0052270 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051480 | Msa0052270 | 0.836087 | 1.149358e-56 | -8.615850e-47 |
| Msa0052270 | Msa0097340 | 0.915247 | 7.380372e-85 | -8.615850e-47 |
| Msa0052270 | Msa0146050 | 0.814139 | 1.793343e-51 | -8.615850e-47 |
| Msa0052270 | Msa0146200 | 0.838102 | 3.510401e-57 | -8.615850e-47 |
| Msa0052270 | Msa0162680 | 0.801279 | 9.704479e-49 | -8.615850e-47 |
| Msa0052270 | Msa0438070 | 0.837381 | 5.374187e-57 | -8.615850e-47 |
| Msa0052270 | Msa0481770 | 0.812565 | 3.976815e-51 | -8.615850e-47 |
| Msa0052270 | Msa1358650 | 0.818174 | 2.249034e-52 | -8.615850e-47 |
| Msa0052270 | Msa1361710 | 0.824893 | 6.307168e-54 | -8.615850e-47 |
| Msa0052270 | Msa1377050 | 0.847062 | 1.466800e-59 | -8.615850e-47 |
| Msa0052270 | Msa1453600 | 0.810847 | 9.402530e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052270 | MtrunA17_Chr1g0152661 | 91.880 | 234 | 9 | 3 | 1 | 226 | 1 | 232 | 8.96e-142 | 395 |
| Msa0052270 | MtrunA17_Chr3g0134711 | 59.259 | 243 | 71 | 9 | 1 | 224 | 1 | 234 | 4.55e-83 | 247 |
| Msa0052270 | MtrunA17_Chr1g0207451 | 44.747 | 257 | 83 | 13 | 1 | 215 | 3 | 242 | 1.11e-47 | 157 |
| Msa0052270 | MtrunA17_Chr1g0180311 | 37.500 | 192 | 79 | 8 | 43 | 194 | 81 | 271 | 1.41e-20 | 87.8 |
| Msa0052270 | MtrunA17_Chr7g0263121 | 37.705 | 122 | 67 | 2 | 30 | 151 | 2 | 114 | 1.60e-18 | 79.7 |
| Msa0052270 | MtrunA17_Chr7g0231181 | 33.166 | 199 | 79 | 7 | 38 | 200 | 164 | 344 | 3.00e-18 | 82.0 |
| Msa0052270 | MtrunA17_Chr7g0263131 | 34.177 | 158 | 86 | 4 | 32 | 189 | 4 | 143 | 1.77e-17 | 76.6 |
| Msa0052270 | MtrunA17_Chr4g0012691 | 48.810 | 84 | 36 | 2 | 78 | 154 | 220 | 303 | 2.45e-17 | 79.7 |
| Msa0052270 | MtrunA17_Chr1g0182161 | 32.515 | 163 | 84 | 6 | 32 | 185 | 3 | 148 | 1.16e-16 | 74.7 |
| Msa0052270 | MtrunA17_Chr5g0448611 | 43.119 | 109 | 30 | 3 | 78 | 155 | 130 | 237 | 8.11e-16 | 74.3 |
| Msa0052270 | MtrunA17_Chr7g0222831 | 36.029 | 136 | 59 | 5 | 29 | 158 | 2 | 115 | 1.85e-15 | 71.6 |
| Msa0052270 | MtrunA17_Chr5g0425411 | 45.263 | 95 | 28 | 3 | 78 | 153 | 119 | 208 | 4.32e-14 | 69.3 |
| Msa0052270 | MtrunA17_Chr1g0212561 | 44.595 | 74 | 41 | 0 | 78 | 151 | 45 | 118 | 9.41e-14 | 67.8 |
| Msa0052270 | MtrunA17_Chr1g0182181 | 39.773 | 88 | 48 | 2 | 76 | 162 | 33 | 116 | 2.13e-13 | 65.9 |
| Msa0052270 | MtrunA17_Chr2g0327901 | 33.036 | 112 | 53 | 2 | 78 | 189 | 34 | 123 | 4.34e-12 | 61.6 |
| Msa0052270 | MtrunA17_Chr4g0018761 | 38.824 | 85 | 37 | 1 | 68 | 152 | 167 | 236 | 2.82e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052270 | AT1G27730.1 | 50.000 | 242 | 86 | 10 | 1 | 222 | 1 | 227 | 1.19e-57 | 182 |
| Msa0052270 | AT5G04340.1 | 51.316 | 228 | 88 | 9 | 1 | 206 | 1 | 227 | 9.29e-49 | 160 |
| Msa0052270 | AT3G19580.1 | 40.392 | 255 | 93 | 8 | 1 | 203 | 1 | 248 | 2.08e-45 | 152 |
| Msa0052270 | AT3G19580.2 | 40.392 | 255 | 93 | 8 | 1 | 203 | 1 | 248 | 2.08e-45 | 152 |
| Msa0052270 | AT5G43170.1 | 47.788 | 226 | 72 | 11 | 1 | 214 | 1 | 192 | 1.54e-43 | 145 |
| Msa0052270 | AT3G49930.1 | 43.455 | 191 | 73 | 5 | 25 | 200 | 36 | 206 | 4.68e-37 | 129 |
| Msa0052270 | AT5G67450.1 | 39.749 | 239 | 90 | 8 | 1 | 187 | 1 | 237 | 1.32e-35 | 126 |
| Msa0052270 | AT3G60580.1 | 39.429 | 175 | 81 | 5 | 38 | 200 | 122 | 283 | 6.25e-24 | 97.1 |
| Msa0052270 | AT1G49900.1 | 47.619 | 105 | 44 | 3 | 63 | 158 | 172 | 274 | 5.52e-23 | 97.4 |
| Msa0052270 | AT1G49900.1 | 52.083 | 96 | 40 | 3 | 77 | 170 | 749 | 840 | 7.99e-21 | 90.9 |
| Msa0052270 | AT2G45120.1 | 40.252 | 159 | 82 | 4 | 38 | 187 | 146 | 300 | 1.05e-22 | 94.4 |
| Msa0052270 | AT2G28200.1 | 33.333 | 195 | 87 | 7 | 37 | 190 | 70 | 262 | 1.90e-21 | 90.5 |
| Msa0052270 | AT5G03510.1 | 30.729 | 192 | 92 | 5 | 39 | 190 | 69 | 259 | 3.82e-18 | 81.6 |
| Msa0052270 | AT5G56200.1 | 42.609 | 115 | 48 | 2 | 80 | 176 | 344 | 458 | 1.53e-17 | 81.3 |
| Msa0052270 | AT2G37430.1 | 40.323 | 124 | 61 | 4 | 32 | 151 | 2 | 116 | 5.29e-17 | 76.3 |
| Msa0052270 | AT5G04390.1 | 28.261 | 230 | 106 | 7 | 39 | 222 | 96 | 312 | 9.50e-17 | 78.2 |
| Msa0052270 | AT4G35280.1 | 37.302 | 126 | 51 | 5 | 39 | 153 | 138 | 246 | 6.89e-16 | 75.1 |
| Msa0052270 | AT3G53600.1 | 32.500 | 160 | 91 | 6 | 32 | 185 | 2 | 150 | 7.45e-16 | 73.2 |
| Msa0052270 | AT2G28710.1 | 39.640 | 111 | 41 | 4 | 43 | 151 | 14 | 100 | 4.73e-15 | 70.5 |
| Msa0052270 | AT3G46090.1 | 38.211 | 123 | 56 | 5 | 38 | 158 | 11 | 115 | 1.93e-14 | 68.9 |
| Msa0052270 | AT1G02030.1 | 32.484 | 157 | 89 | 5 | 34 | 190 | 119 | 258 | 2.05e-13 | 68.2 |
| Msa0052270 | AT3G46080.1 | 48.101 | 79 | 34 | 3 | 75 | 151 | 34 | 107 | 2.40e-13 | 65.9 |
| Msa0052270 | AT5G59820.1 | 34.400 | 125 | 55 | 4 | 46 | 165 | 18 | 120 | 1.68e-12 | 63.5 |
| Msa0052270 | AT5G61470.1 | 43.038 | 79 | 32 | 2 | 78 | 152 | 228 | 297 | 1.74e-12 | 65.9 |
| Msa0052270 | AT3G46070.1 | 38.272 | 81 | 49 | 1 | 71 | 151 | 29 | 108 | 8.98e-12 | 62.0 |
| Msa0052270 | AT3G10470.1 | 34.314 | 102 | 39 | 2 | 78 | 151 | 182 | 283 | 6.95e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATCGAAGGTGAATTT+AGG | 0.179252 | 1_2:+6467445 | None:intergenic |
| CGTTTAGTCCATGGAAGATT+AGG | 0.289571 | 1_2:+6467424 | None:intergenic |
| AAAATTCGGAATTTCAATCT+TGG | 0.317164 | 1_2:+6466705 | None:intergenic |
| AGAACATTTGTAACTGAGTT+TGG | 0.333314 | 1_2:+6467264 | None:intergenic |
| CCGGAGTTTGCTAATAAGAT+TGG | 0.334097 | 1_2:-6466793 | Msa0052270:CDS |
| ATTATTCATCACTGAAAATT+CGG | 0.339013 | 1_2:+6466691 | None:intergenic |
| GTTCATCGAAGGTGAATTTA+GGG | 0.339272 | 1_2:+6467446 | None:intergenic |
| TTGTCAATGGTTGTTGGTGG+TGG | 0.368111 | 1_2:+6467292 | None:intergenic |
| TTTCCGACAGGACAAGCTTT+GGG | 0.386450 | 1_2:-6466946 | Msa0052270:CDS |
| AAATTCGGAATTTCAATCTT+GGG | 0.411878 | 1_2:+6466706 | None:intergenic |
| TCTGAATATCCCGGCTTATC+CGG | 0.414206 | 1_2:-6466812 | Msa0052270:CDS |
| AACTCCGTCGGTGGCGGTGT+TGG | 0.416768 | 1_2:-6467178 | Msa0052270:CDS |
| GTTTCCGACAGGACAAGCTT+TGG | 0.428305 | 1_2:-6466947 | Msa0052270:CDS |
| GATTCAAAGGCTTGAAATCA+TGG | 0.448405 | 1_2:+6467314 | None:intergenic |
| TTCTTCATCATCACAGGATG+AGG | 0.458403 | 1_2:+6466751 | None:intergenic |
| GAGTTTGGTGTTGTTGTCAA+TGG | 0.463877 | 1_2:+6467279 | None:intergenic |
| GTGTTGTTGTCAATGGTTGT+TGG | 0.486272 | 1_2:+6467286 | None:intergenic |
| GCTTTCTTCTTCATCATCAC+AGG | 0.490449 | 1_2:+6466745 | None:intergenic |
| TTAGCAAACTCCGGATAAGC+CGG | 0.495798 | 1_2:+6466802 | None:intergenic |
| ATGAGTGTTCGATTTGTCAT+AGG | 0.501927 | 1_2:-6466972 | Msa0052270:CDS |
| ACTTGCTTTGTGTCCACCGA+GGG | 0.502207 | 1_2:+6467210 | None:intergenic |
| GTCGGTGGCGGTGTTGGTGT+TGG | 0.503000 | 1_2:-6467172 | Msa0052270:CDS |
| TGTCATAGGTCGTTTCCGAC+AGG | 0.511441 | 1_2:-6466958 | Msa0052270:CDS |
| GAATTTAGGGGTAGTAGAAG+TGG | 0.512596 | 1_2:+6467459 | None:intergenic |
| GAACGTTTACGTTTAGTCCA+TGG | 0.526324 | 1_2:+6467415 | None:intergenic |
| TTGTTGTCAATGGTTGTTGG+TGG | 0.527436 | 1_2:+6467289 | None:intergenic |
| GGTGGCGGTGTTGGTGTTGG+TGG | 0.533807 | 1_2:-6467169 | Msa0052270:intron |
| GTTGTTGGTGGTGGATTCAA+AGG | 0.535966 | 1_2:+6467301 | None:intergenic |
| TGTCACTACGAAGGTGTTGT+TGG | 0.546239 | 1_2:-6466910 | Msa0052270:CDS |
| AATTTAGGGGTAGTAGAAGT+GGG | 0.550780 | 1_2:+6467460 | None:intergenic |
| CCAATCTTATTAGCAAACTC+CGG | 0.554584 | 1_2:+6466793 | None:intergenic |
| CCACCCAAAGCTTGTCCTGT+CGG | 0.557784 | 1_2:+6466943 | None:intergenic |
| CACTACGAAGGTGTTGTTGG+TGG | 0.560111 | 1_2:-6466907 | Msa0052270:CDS |
| TACGAAGGTGTTGTTGGTGG+TGG | 0.560220 | 1_2:-6466904 | Msa0052270:CDS |
| AACACCGCCACCGTTTGTGT+TGG | 0.560436 | 1_2:+6467002 | None:intergenic |
| ACTAGCTCAGCCAACACAAA+CGG | 0.565002 | 1_2:-6467012 | Msa0052270:CDS |
| TCGATGAACCTAATCTTCCA+TGG | 0.566526 | 1_2:-6467432 | Msa0052270:CDS |
| TGATTTCGATCTGAATATCC+CGG | 0.576158 | 1_2:-6466821 | Msa0052270:CDS |
| CCGACAGGACAAGCTTTGGG+TGG | 0.581171 | 1_2:-6466943 | Msa0052270:CDS |
| TGAAATCATGGCGGTTGGTG+TGG | 0.583151 | 1_2:+6467326 | None:intergenic |
| TAGCAAACTCCGGATAAGCC+GGG | 0.583949 | 1_2:+6466803 | None:intergenic |
| AGGCTTGAAATCATGGCGGT+TGG | 0.583949 | 1_2:+6467321 | None:intergenic |
| TCTGCTATAACTGTCTCTGA+AGG | 0.590024 | 1_2:-6466871 | Msa0052270:CDS |
| TGTCTCATCATGCTCGCTCG+TGG | 0.591916 | 1_2:-6467349 | Msa0052270:CDS |
| TATAACTGTCTCTGAAGGTG+TGG | 0.592472 | 1_2:-6466866 | Msa0052270:CDS |
| AACACCAACACCGCCACCGA+CGG | 0.603987 | 1_2:+6467174 | None:intergenic |
| ATAACTGTCTCTGAAGGTGT+GGG | 0.609017 | 1_2:-6466865 | Msa0052270:CDS |
| TCAGCCAACACAAACGGTGG+CGG | 0.610808 | 1_2:-6467006 | Msa0052270:CDS |
| GACTTGCTTTGTGTCCACCG+AGG | 0.621099 | 1_2:+6467209 | None:intergenic |
| GTTTGTGTTGGCTGAGCTAG+TGG | 0.622781 | 1_2:+6467014 | None:intergenic |
| TCTTCTTATCAAGCCCTCGG+TGG | 0.636904 | 1_2:-6467223 | Msa0052270:CDS |
| ATCACGTTGATGACTATGTG+TGG | 0.647702 | 1_2:+6466840 | None:intergenic |
| TGGAAGATTAGGTTCATCGA+AGG | 0.659843 | 1_2:+6467435 | None:intergenic |
| TGTGTTGGCTGAGCTAGTGG+TGG | 0.672396 | 1_2:+6467017 | None:intergenic |
| TTCATCGAAGGTGAATTTAG+GGG | 0.676237 | 1_2:+6467447 | None:intergenic |
| CACAAACGTTGTCACTACGA+AGG | 0.683725 | 1_2:-6466919 | Msa0052270:CDS |
| AGCTCAGCCAACACAAACGG+TGG | 0.690830 | 1_2:-6467009 | Msa0052270:CDS |
| TCAAAGGCTTGAAATCATGG+CGG | 0.753429 | 1_2:+6467317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATTCGGAATTTCAATCTT+GGG | + | chr1_2:6467480-6467499 | None:intergenic | 25.0% |
| ! | AAAATTCGGAATTTCAATCT+TGG | + | chr1_2:6467481-6467500 | None:intergenic | 25.0% |
| ! | AAATTCGGAATTTCAATCTT+GGG | + | chr1_2:6467480-6467499 | None:intergenic | 25.0% |
| ! | AAAATTCGGAATTTCAATCT+TGG | + | chr1_2:6467481-6467500 | None:intergenic | 25.0% |
| AGAACATTTGTAACTGAGTT+TGG | + | chr1_2:6466922-6466941 | None:intergenic | 30.0% | |
| AGAACATTTGTAACTGAGTT+TGG | + | chr1_2:6466922-6466941 | None:intergenic | 30.0% | |
| AATTTAGGGGTAGTAGAAGT+GGG | + | chr1_2:6466726-6466745 | None:intergenic | 35.0% | |
| TTCATCGAAGGTGAATTTAG+GGG | + | chr1_2:6466739-6466758 | None:intergenic | 35.0% | |
| GTTCATCGAAGGTGAATTTA+GGG | + | chr1_2:6466740-6466759 | None:intergenic | 35.0% | |
| GATTCAAAGGCTTGAAATCA+TGG | + | chr1_2:6466872-6466891 | None:intergenic | 35.0% | |
| ! | TTTTCTTCTTATCAAGCCCT+CGG | - | chr1_2:6466957-6466976 | Msa0052270:CDS | 35.0% |
| ! | ATGAGTGTTCGATTTGTCAT+AGG | - | chr1_2:6467211-6467230 | Msa0052270:CDS | 35.0% |
| TGATTTCGATCTGAATATCC+CGG | - | chr1_2:6467362-6467381 | Msa0052270:CDS | 35.0% | |
| CCAATCTTATTAGCAAACTC+CGG | + | chr1_2:6467393-6467412 | None:intergenic | 35.0% | |
| AATTTAGGGGTAGTAGAAGT+GGG | + | chr1_2:6466726-6466745 | None:intergenic | 35.0% | |
| TTCATCGAAGGTGAATTTAG+GGG | + | chr1_2:6466739-6466758 | None:intergenic | 35.0% | |
| GTTCATCGAAGGTGAATTTA+GGG | + | chr1_2:6466740-6466759 | None:intergenic | 35.0% | |
| GATTCAAAGGCTTGAAATCA+TGG | + | chr1_2:6466872-6466891 | None:intergenic | 35.0% | |
| ! | TTTTCTTCTTATCAAGCCCT+CGG | - | chr1_2:6466957-6466976 | Msa0052270:CDS | 35.0% |
| ! | ATGAGTGTTCGATTTGTCAT+AGG | - | chr1_2:6467211-6467230 | Msa0052270:CDS | 35.0% |
| TGATTTCGATCTGAATATCC+CGG | - | chr1_2:6467362-6467381 | Msa0052270:CDS | 35.0% | |
| CCAATCTTATTAGCAAACTC+CGG | + | chr1_2:6467393-6467412 | None:intergenic | 35.0% | |
| GAATTTAGGGGTAGTAGAAG+TGG | + | chr1_2:6466727-6466746 | None:intergenic | 40.0% | |
| GGTTCATCGAAGGTGAATTT+AGG | + | chr1_2:6466741-6466760 | None:intergenic | 40.0% | |
| TGGAAGATTAGGTTCATCGA+AGG | + | chr1_2:6466751-6466770 | None:intergenic | 40.0% | |
| TCGATGAACCTAATCTTCCA+TGG | - | chr1_2:6466751-6466770 | Msa0052270:CDS | 40.0% | |
| CGTTTAGTCCATGGAAGATT+AGG | + | chr1_2:6466762-6466781 | None:intergenic | 40.0% | |
| GAACGTTTACGTTTAGTCCA+TGG | + | chr1_2:6466771-6466790 | None:intergenic | 40.0% | |
| TCAAAGGCTTGAAATCATGG+CGG | + | chr1_2:6466869-6466888 | None:intergenic | 40.0% | |
| TTGTTGTCAATGGTTGTTGG+TGG | + | chr1_2:6466897-6466916 | None:intergenic | 40.0% | |
| ! | GTGTTGTTGTCAATGGTTGT+TGG | + | chr1_2:6466900-6466919 | None:intergenic | 40.0% |
| !! | GAGTTTGGTGTTGTTGTCAA+TGG | + | chr1_2:6466907-6466926 | None:intergenic | 40.0% |
| TCTGCTATAACTGTCTCTGA+AGG | - | chr1_2:6467312-6467331 | Msa0052270:CDS | 40.0% | |
| ! | TATAACTGTCTCTGAAGGTG+TGG | - | chr1_2:6467317-6467336 | Msa0052270:CDS | 40.0% |
| ! | ATAACTGTCTCTGAAGGTGT+GGG | - | chr1_2:6467318-6467337 | Msa0052270:CDS | 40.0% |
| !! | ATCACGTTGATGACTATGTG+TGG | + | chr1_2:6467346-6467365 | None:intergenic | 40.0% |
| !! | CCGGAGTTTGCTAATAAGAT+TGG | - | chr1_2:6467390-6467409 | Msa0052270:CDS | 40.0% |
| TTCTTCATCATCACAGGATG+AGG | + | chr1_2:6467435-6467454 | None:intergenic | 40.0% | |
| GCTTTCTTCTTCATCATCAC+AGG | + | chr1_2:6467441-6467460 | None:intergenic | 40.0% | |
| GAATTTAGGGGTAGTAGAAG+TGG | + | chr1_2:6466727-6466746 | None:intergenic | 40.0% | |
| GGTTCATCGAAGGTGAATTT+AGG | + | chr1_2:6466741-6466760 | None:intergenic | 40.0% | |
| TGGAAGATTAGGTTCATCGA+AGG | + | chr1_2:6466751-6466770 | None:intergenic | 40.0% | |
| TCGATGAACCTAATCTTCCA+TGG | - | chr1_2:6466751-6466770 | Msa0052270:CDS | 40.0% | |
| CGTTTAGTCCATGGAAGATT+AGG | + | chr1_2:6466762-6466781 | None:intergenic | 40.0% | |
| GAACGTTTACGTTTAGTCCA+TGG | + | chr1_2:6466771-6466790 | None:intergenic | 40.0% | |
| TCAAAGGCTTGAAATCATGG+CGG | + | chr1_2:6466869-6466888 | None:intergenic | 40.0% | |
| TTGTTGTCAATGGTTGTTGG+TGG | + | chr1_2:6466897-6466916 | None:intergenic | 40.0% | |
| ! | GTGTTGTTGTCAATGGTTGT+TGG | + | chr1_2:6466900-6466919 | None:intergenic | 40.0% |
| !! | GAGTTTGGTGTTGTTGTCAA+TGG | + | chr1_2:6466907-6466926 | None:intergenic | 40.0% |
| TCTGCTATAACTGTCTCTGA+AGG | - | chr1_2:6467312-6467331 | Msa0052270:CDS | 40.0% | |
| ! | TATAACTGTCTCTGAAGGTG+TGG | - | chr1_2:6467317-6467336 | Msa0052270:CDS | 40.0% |
| ! | ATAACTGTCTCTGAAGGTGT+GGG | - | chr1_2:6467318-6467337 | Msa0052270:CDS | 40.0% |
| !! | ATCACGTTGATGACTATGTG+TGG | + | chr1_2:6467346-6467365 | None:intergenic | 40.0% |
| !! | CCGGAGTTTGCTAATAAGAT+TGG | - | chr1_2:6467390-6467409 | Msa0052270:CDS | 40.0% |
| TTCTTCATCATCACAGGATG+AGG | + | chr1_2:6467435-6467454 | None:intergenic | 40.0% | |
| GCTTTCTTCTTCATCATCAC+AGG | + | chr1_2:6467441-6467460 | None:intergenic | 40.0% | |
| !! | GTTGTTGGTGGTGGATTCAA+AGG | + | chr1_2:6466885-6466904 | None:intergenic | 45.0% |
| ! | TTGTCAATGGTTGTTGGTGG+TGG | + | chr1_2:6466894-6466913 | None:intergenic | 45.0% |
| ACTAGCTCAGCCAACACAAA+CGG | - | chr1_2:6467171-6467190 | Msa0052270:CDS | 45.0% | |
| TTTCCGACAGGACAAGCTTT+GGG | - | chr1_2:6467237-6467256 | Msa0052270:CDS | 45.0% | |
| CACAAACGTTGTCACTACGA+AGG | - | chr1_2:6467264-6467283 | Msa0052270:CDS | 45.0% | |
| !! | TGTCACTACGAAGGTGTTGT+TGG | - | chr1_2:6467273-6467292 | Msa0052270:CDS | 45.0% |
| TCTGAATATCCCGGCTTATC+CGG | - | chr1_2:6467371-6467390 | Msa0052270:CDS | 45.0% | |
| TTAGCAAACTCCGGATAAGC+CGG | + | chr1_2:6467384-6467403 | None:intergenic | 45.0% | |
| ! | GAAGAAAGCTCGTGTTTTCG+TGG | - | chr1_2:6467452-6467471 | Msa0052270:CDS | 45.0% |
| !! | GTTGTTGGTGGTGGATTCAA+AGG | + | chr1_2:6466885-6466904 | None:intergenic | 45.0% |
| ! | TTGTCAATGGTTGTTGGTGG+TGG | + | chr1_2:6466894-6466913 | None:intergenic | 45.0% |
| ACTAGCTCAGCCAACACAAA+CGG | - | chr1_2:6467171-6467190 | Msa0052270:CDS | 45.0% | |
| TTTCCGACAGGACAAGCTTT+GGG | - | chr1_2:6467237-6467256 | Msa0052270:CDS | 45.0% | |
| CACAAACGTTGTCACTACGA+AGG | - | chr1_2:6467264-6467283 | Msa0052270:CDS | 45.0% | |
| !! | TGTCACTACGAAGGTGTTGT+TGG | - | chr1_2:6467273-6467292 | Msa0052270:CDS | 45.0% |
| TCTGAATATCCCGGCTTATC+CGG | - | chr1_2:6467371-6467390 | Msa0052270:CDS | 45.0% | |
| TTAGCAAACTCCGGATAAGC+CGG | + | chr1_2:6467384-6467403 | None:intergenic | 45.0% | |
| ! | GAAGAAAGCTCGTGTTTTCG+TGG | - | chr1_2:6467452-6467471 | Msa0052270:CDS | 45.0% |
| ! | TGAAATCATGGCGGTTGGTG+TGG | + | chr1_2:6466860-6466879 | None:intergenic | 50.0% |
| AGGCTTGAAATCATGGCGGT+TGG | + | chr1_2:6466865-6466884 | None:intergenic | 50.0% | |
| TCTTCTTATCAAGCCCTCGG+TGG | - | chr1_2:6466960-6466979 | Msa0052270:CDS | 50.0% | |
| ACTTGCTTTGTGTCCACCGA+GGG | + | chr1_2:6466976-6466995 | None:intergenic | 50.0% | |
| AGTCACCGCAAAAACTCCGT+CGG | - | chr1_2:6466993-6467012 | Msa0052270:CDS | 50.0% | |
| !! | GTTTGTGTTGGCTGAGCTAG+TGG | + | chr1_2:6467172-6467191 | None:intergenic | 50.0% |
| TGTCATAGGTCGTTTCCGAC+AGG | - | chr1_2:6467225-6467244 | Msa0052270:CDS | 50.0% | |
| GTTTCCGACAGGACAAGCTT+TGG | - | chr1_2:6467236-6467255 | Msa0052270:CDS | 50.0% | |
| !! | CACTACGAAGGTGTTGTTGG+TGG | - | chr1_2:6467276-6467295 | Msa0052270:CDS | 50.0% |
| !! | TACGAAGGTGTTGTTGGTGG+TGG | - | chr1_2:6467279-6467298 | Msa0052270:CDS | 50.0% |
| TAGCAAACTCCGGATAAGCC+GGG | + | chr1_2:6467383-6467402 | None:intergenic | 50.0% | |
| ! | TGAAATCATGGCGGTTGGTG+TGG | + | chr1_2:6466860-6466879 | None:intergenic | 50.0% |
| AGGCTTGAAATCATGGCGGT+TGG | + | chr1_2:6466865-6466884 | None:intergenic | 50.0% | |
| TCTTCTTATCAAGCCCTCGG+TGG | - | chr1_2:6466960-6466979 | Msa0052270:CDS | 50.0% | |
| ACTTGCTTTGTGTCCACCGA+GGG | + | chr1_2:6466976-6466995 | None:intergenic | 50.0% | |
| AGTCACCGCAAAAACTCCGT+CGG | - | chr1_2:6466993-6467012 | Msa0052270:CDS | 50.0% | |
| !! | GTTTGTGTTGGCTGAGCTAG+TGG | + | chr1_2:6467172-6467191 | None:intergenic | 50.0% |
| TGTCATAGGTCGTTTCCGAC+AGG | - | chr1_2:6467225-6467244 | Msa0052270:CDS | 50.0% | |
| GTTTCCGACAGGACAAGCTT+TGG | - | chr1_2:6467236-6467255 | Msa0052270:CDS | 50.0% | |
| !! | CACTACGAAGGTGTTGTTGG+TGG | - | chr1_2:6467276-6467295 | Msa0052270:CDS | 50.0% |
| !! | TACGAAGGTGTTGTTGGTGG+TGG | - | chr1_2:6467279-6467298 | Msa0052270:CDS | 50.0% |
| TAGCAAACTCCGGATAAGCC+GGG | + | chr1_2:6467383-6467402 | None:intergenic | 50.0% | |
| TGTCTCATCATGCTCGCTCG+TGG | - | chr1_2:6466834-6466853 | Msa0052270:CDS | 55.0% | |
| ! | GACTTGCTTTGTGTCCACCG+AGG | + | chr1_2:6466977-6466996 | None:intergenic | 55.0% |
| GTGGCAGCTGAGGAAGTTGA+TGG | + | chr1_2:6467150-6467169 | None:intergenic | 55.0% | |
| !! | TGTGTTGGCTGAGCTAGTGG+TGG | + | chr1_2:6467169-6467188 | None:intergenic | 55.0% |
| AGCTCAGCCAACACAAACGG+TGG | - | chr1_2:6467174-6467193 | Msa0052270:CDS | 55.0% | |
| TCAGCCAACACAAACGGTGG+CGG | - | chr1_2:6467177-6467196 | Msa0052270:CDS | 55.0% | |
| AACACCGCCACCGTTTGTGT+TGG | + | chr1_2:6467184-6467203 | None:intergenic | 55.0% | |
| CCACCCAAAGCTTGTCCTGT+CGG | + | chr1_2:6467243-6467262 | None:intergenic | 55.0% | |
| TGTCTCATCATGCTCGCTCG+TGG | - | chr1_2:6466834-6466853 | Msa0052270:CDS | 55.0% | |
| ! | GACTTGCTTTGTGTCCACCG+AGG | + | chr1_2:6466977-6466996 | None:intergenic | 55.0% |
| GTGGCAGCTGAGGAAGTTGA+TGG | + | chr1_2:6467150-6467169 | None:intergenic | 55.0% | |
| !! | TGTGTTGGCTGAGCTAGTGG+TGG | + | chr1_2:6467169-6467188 | None:intergenic | 55.0% |
| AGCTCAGCCAACACAAACGG+TGG | - | chr1_2:6467174-6467193 | Msa0052270:CDS | 55.0% | |
| TCAGCCAACACAAACGGTGG+CGG | - | chr1_2:6467177-6467196 | Msa0052270:CDS | 55.0% | |
| AACACCGCCACCGTTTGTGT+TGG | + | chr1_2:6467184-6467203 | None:intergenic | 55.0% | |
| CCACCCAAAGCTTGTCCTGT+CGG | + | chr1_2:6467243-6467262 | None:intergenic | 55.0% | |
| CACCGCAAAAACTCCGTCGG+TGG | - | chr1_2:6466996-6467015 | Msa0052270:CDS | 60.0% | |
| ! | CGCCACCGACGGAGTTTTTG+CGG | + | chr1_2:6467001-6467020 | None:intergenic | 60.0% |
| CGCAAAAACTCCGTCGGTGG+CGG | - | chr1_2:6466999-6467018 | Msa0052270:CDS | 60.0% | |
| AACACCAACACCGCCACCGA+CGG | + | chr1_2:6467012-6467031 | None:intergenic | 60.0% | |
| TGAGCTAGTGGTGGCAGCTG+AGG | + | chr1_2:6467160-6467179 | None:intergenic | 60.0% | |
| !! | CCGACAGGACAAGCTTTGGG+TGG | - | chr1_2:6467240-6467259 | Msa0052270:CDS | 60.0% |
| CACCGCAAAAACTCCGTCGG+TGG | - | chr1_2:6466996-6467015 | Msa0052270:CDS | 60.0% | |
| ! | CGCCACCGACGGAGTTTTTG+CGG | + | chr1_2:6467001-6467020 | None:intergenic | 60.0% |
| CGCAAAAACTCCGTCGGTGG+CGG | - | chr1_2:6466999-6467018 | Msa0052270:CDS | 60.0% | |
| AACACCAACACCGCCACCGA+CGG | + | chr1_2:6467012-6467031 | None:intergenic | 60.0% | |
| TGAGCTAGTGGTGGCAGCTG+AGG | + | chr1_2:6467160-6467179 | None:intergenic | 60.0% | |
| !! | CCGACAGGACAAGCTTTGGG+TGG | - | chr1_2:6467240-6467259 | Msa0052270:CDS | 60.0% |
| ! | AACTCCGTCGGTGGCGGTGT+TGG | - | chr1_2:6467005-6467024 | Msa0052270:CDS | 65.0% |
| !! | GTCGGTGGCGGTGTTGGTGT+TGG | - | chr1_2:6467011-6467030 | Msa0052270:CDS | 65.0% |
| !! | GGTGGCGGTGTTGGTGTTGG+TGG | - | chr1_2:6467014-6467033 | Msa0052270:CDS | 65.0% |
| ! | AACTCCGTCGGTGGCGGTGT+TGG | - | chr1_2:6467005-6467024 | Msa0052270:CDS | 65.0% |
| !! | GTCGGTGGCGGTGTTGGTGT+TGG | - | chr1_2:6467011-6467030 | Msa0052270:CDS | 65.0% |
| !! | GGTGGCGGTGTTGGTGTTGG+TGG | - | chr1_2:6467014-6467033 | Msa0052270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6466699 | 6467506 | 6466699 | ID=Msa0052270;Name=Msa0052270 |
| chr1_2 | mRNA | 6466699 | 6467506 | 6466699 | ID=Msa0052270-mRNA-1;Parent=Msa0052270;Name=Msa0052270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|226 |
| chr1_2 | exon | 6467170 | 6467506 | 6467170 | ID=Msa0052270-mRNA-1:exon:2089;Parent=Msa0052270-mRNA-1 |
| chr1_2 | exon | 6466699 | 6467042 | 6466699 | ID=Msa0052270-mRNA-1:exon:2088;Parent=Msa0052270-mRNA-1 |
| chr1_2 | CDS | 6467170 | 6467506 | 6467170 | ID=Msa0052270-mRNA-1:cds;Parent=Msa0052270-mRNA-1 |
| chr1_2 | CDS | 6466699 | 6467042 | 6466699 | ID=Msa0052270-mRNA-1:cds;Parent=Msa0052270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
