Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162680 | XP_003590328.1 | 99.020 | 306 | 3 | 0 | 1 | 306 | 1 | 306 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162680 | sp|Q9ZSD4|SY121_ARATH | 72.587 | 259 | 71 | 0 | 27 | 285 | 30 | 288 | 1.26e-139 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162680 | B7FI20 | 99.020 | 306 | 3 | 0 | 1 | 306 | 1 | 306 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026420 | Msa0162680 | 0.864426 | 1.226841e-64 | -8.615850e-47 |
| Msa0030800 | Msa0162680 | 0.868644 | 5.603285e-66 | -8.615850e-47 |
| Msa0046680 | Msa0162680 | 0.813283 | 2.768370e-51 | -8.615850e-47 |
| Msa0051480 | Msa0162680 | 0.888711 | 4.634739e-73 | -8.615850e-47 |
| Msa0051620 | Msa0162680 | 0.843466 | 1.377377e-58 | -8.615850e-47 |
| Msa0051730 | Msa0162680 | 0.830505 | 2.828282e-55 | -8.615850e-47 |
| Msa0052270 | Msa0162680 | 0.801279 | 9.704479e-49 | -8.615850e-47 |
| Msa0071470 | Msa0162680 | 0.829935 | 3.895666e-55 | -8.615850e-47 |
| Msa0078210 | Msa0162680 | 0.860703 | 1.717048e-63 | -8.615850e-47 |
| Msa0083890 | Msa0162680 | 0.825514 | 4.498229e-54 | -8.615850e-47 |
| Msa0086360 | Msa0162680 | 0.820510 | 6.602943e-53 | -8.615850e-47 |
| Msa0089860 | Msa0162680 | 0.818923 | 1.521443e-52 | -8.615850e-47 |
| Msa0089890 | Msa0162680 | 0.817709 | 2.865331e-52 | -8.615850e-47 |
| Msa0092970 | Msa0162680 | 0.810511 | 1.111351e-50 | -8.615850e-47 |
| Msa0104810 | Msa0162680 | 0.807356 | 5.261629e-50 | -8.615850e-47 |
| Msa0107830 | Msa0162680 | 0.816918 | 4.316427e-52 | -8.615850e-47 |
| Msa0119430 | Msa0162680 | 0.822078 | 2.871742e-53 | -8.615850e-47 |
| Msa0125690 | Msa0162680 | 0.807161 | 5.787042e-50 | -8.615850e-47 |
| Msa0125890 | Msa0162680 | 0.810835 | 9.458597e-51 | -8.615850e-47 |
| Msa0126430 | Msa0162680 | 0.822292 | 2.560527e-53 | -8.615850e-47 |
| Msa0129290 | Msa0162680 | 0.815110 | 1.093164e-51 | -8.615850e-47 |
| Msa0136240 | Msa0162680 | 0.812121 | 4.973004e-51 | -8.615850e-47 |
| Msa0143640 | Msa0162680 | 0.853480 | 2.323787e-61 | -8.615850e-47 |
| Msa0146090 | Msa0162680 | 0.830050 | 3.652484e-55 | -8.615850e-47 |
| Msa0146200 | Msa0162680 | 0.892295 | 1.810791e-74 | -8.615850e-47 |
| Msa0150620 | Msa0162680 | 0.838756 | 2.380308e-57 | -8.615850e-47 |
| Msa0161560 | Msa0162680 | 0.814280 | 1.669580e-51 | -8.615850e-47 |
| Msa0162680 | Msa0164250 | 0.809437 | 1.893466e-50 | -8.615850e-47 |
| Msa0162680 | Msa0185100 | 0.853014 | 3.161451e-61 | -8.615850e-47 |
| Msa0162680 | Msa0186240 | 0.819461 | 1.147677e-52 | -8.615850e-47 |
| Msa0162680 | Msa0193190 | 0.833705 | 4.573015e-56 | -8.615850e-47 |
| Msa0162680 | Msa0202380 | 0.840217 | 9.932183e-58 | -8.615850e-47 |
| Msa0162680 | Msa0204170 | 0.826829 | 2.187902e-54 | -8.615850e-47 |
| Msa0162680 | Msa0234740 | 0.838308 | 3.106621e-57 | -8.615850e-47 |
| Msa0162680 | Msa0238710 | 0.811894 | 5.572162e-51 | -8.615850e-47 |
| Msa0162680 | Msa0245400 | 0.818351 | 2.050660e-52 | -8.615850e-47 |
| Msa0162680 | Msa0246140 | 0.820894 | 5.388289e-53 | -8.615850e-47 |
| Msa0162680 | Msa0247470 | 0.814563 | 1.445866e-51 | -8.615850e-47 |
| Msa0162680 | Msa0267900 | 0.872959 | 2.130110e-67 | -8.615850e-47 |
| Msa0162680 | Msa0271700 | 0.836133 | 1.118729e-56 | -8.615850e-47 |
| Msa0162680 | Msa0271720 | 0.832359 | 9.887050e-56 | -8.615850e-47 |
| Msa0162680 | Msa0273070 | 0.842248 | 2.904188e-58 | -8.615850e-47 |
| Msa0162680 | Msa0284730 | 0.800392 | 1.472686e-48 | -8.615850e-47 |
| Msa0162680 | Msa0302510 | 0.817202 | 3.725757e-52 | -8.615850e-47 |
| Msa0162680 | Msa0306310 | 0.830478 | 2.870924e-55 | -8.615850e-47 |
| Msa0162680 | Msa0307350 | 0.809024 | 2.321088e-50 | -8.615850e-47 |
| Msa0162680 | Msa0312300 | 0.807401 | 5.145948e-50 | -8.615850e-47 |
| Msa0162680 | Msa0316230 | 0.800029 | 1.746000e-48 | -8.615850e-47 |
| Msa0162680 | Msa0319680 | 0.834940 | 2.240502e-56 | -8.615850e-47 |
| Msa0162680 | Msa0324810 | 0.817921 | 2.566570e-52 | -8.615850e-47 |
| Msa0162680 | Msa0324840 | 0.819655 | 1.036433e-52 | -8.615850e-47 |
| Msa0162680 | Msa0345890 | 0.800847 | 1.189254e-48 | -8.615850e-47 |
| Msa0162680 | Msa0345980 | 0.867731 | 1.102145e-65 | -8.615850e-47 |
| Msa0162680 | Msa0353010 | 0.812798 | 3.537041e-51 | -8.615850e-47 |
| Msa0162680 | Msa0375920 | 0.823295 | 1.496235e-53 | -8.615850e-47 |
| Msa0162680 | Msa0382480 | 0.803243 | 3.826310e-49 | -8.615850e-47 |
| Msa0162680 | Msa0383900 | 0.812932 | 3.304736e-51 | -8.615850e-47 |
| Msa0162680 | Msa0385320 | 0.818634 | 1.769088e-52 | -8.615850e-47 |
| Msa0162680 | Msa0390170 | 0.803792 | 2.944235e-49 | -8.615850e-47 |
| Msa0162680 | Msa0390200 | 0.820921 | 5.312459e-53 | -8.615850e-47 |
| Msa0162680 | Msa0393100 | 0.875263 | 3.537079e-68 | -8.615850e-47 |
| Msa0162680 | Msa0397200 | 0.803172 | 3.957403e-49 | -8.615850e-47 |
| Msa0162680 | Msa0400010 | 0.808699 | 2.724117e-50 | -8.615850e-47 |
| Msa0162680 | Msa0402800 | 0.874369 | 7.125446e-68 | -8.615850e-47 |
| Msa0162680 | Msa0421080 | 0.828936 | 6.815217e-55 | -8.615850e-47 |
| Msa0162680 | Msa0429910 | 0.815143 | 1.074952e-51 | -8.615850e-47 |
| Msa0162680 | Msa0434300 | 0.815411 | 9.371227e-52 | -8.615850e-47 |
| Msa0162680 | Msa0434400 | 0.821449 | 4.013815e-53 | -8.615850e-47 |
| Msa0162680 | Msa0438070 | 0.888295 | 6.701529e-73 | -8.615850e-47 |
| Msa0162680 | Msa0443450 | 0.837128 | 6.239216e-57 | -8.615850e-47 |
| Msa0162680 | Msa0447160 | 0.824245 | 8.960910e-54 | -8.615850e-47 |
| Msa0162680 | Msa0449620 | 0.838583 | 2.638292e-57 | -8.615850e-47 |
| Msa0162680 | Msa0460600 | 0.839912 | 1.193087e-57 | -8.615850e-47 |
| Msa0162680 | Msa0466850 | 0.816197 | 6.259611e-52 | -8.615850e-47 |
| Msa0162680 | Msa0476770 | 0.800752 | 1.243833e-48 | -8.615850e-47 |
| Msa0162680 | Msa0478080 | 0.818091 | 2.348806e-52 | -8.615850e-47 |
| Msa0162680 | Msa0480530 | 0.804788 | 1.825956e-49 | -8.615850e-47 |
| Msa0162680 | Msa0480540 | 0.845138 | 4.896774e-59 | -8.615850e-47 |
| Msa0162680 | Msa0480550 | 0.842107 | 3.164919e-58 | -8.615850e-47 |
| Msa0162680 | Msa0481740 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
| Msa0162680 | Msa0481770 | 0.864875 | 8.872032e-65 | -8.615850e-47 |
| Msa0162680 | Msa0488580 | 0.871305 | 7.561468e-67 | -8.615850e-47 |
| Msa0162680 | Msa0493870 | 0.819918 | 9.023557e-53 | -8.615850e-47 |
| Msa0162680 | Msa0497860 | 0.875639 | 2.629119e-68 | -8.615850e-47 |
| Msa0162680 | Msa0500440 | 0.805795 | 1.123173e-49 | -8.615850e-47 |
| Msa0162680 | Msa0500770 | 0.843630 | 1.245174e-58 | -8.615850e-47 |
| Msa0162680 | Msa0510870 | 0.821820 | 3.295532e-53 | -8.615850e-47 |
| Msa0162680 | Msa0513670 | 0.815822 | 7.591723e-52 | -8.615850e-47 |
| Msa0162680 | Msa0521380 | 0.830494 | 2.844803e-55 | -8.615850e-47 |
| Msa0162680 | Msa0522140 | 0.814479 | 1.508500e-51 | -8.615850e-47 |
| Msa0162680 | Msa0522170 | 0.818701 | 1.708603e-52 | -8.615850e-47 |
| Msa0162680 | Msa0523080 | 0.823728 | 1.184949e-53 | -8.615850e-47 |
| Msa0162680 | Msa0534270 | 0.822475 | 2.322899e-53 | -8.615850e-47 |
| Msa0162680 | Msa0556270 | 0.819816 | 9.520012e-53 | -8.615850e-47 |
| Msa0162680 | Msa0557240 | 0.815305 | 9.896119e-52 | -8.615850e-47 |
| Msa0162680 | Msa0565180 | 0.807134 | 5.862786e-50 | -8.615850e-47 |
| Msa0162680 | Msa0566530 | 0.806126 | 9.571503e-50 | -8.615850e-47 |
| Msa0162680 | Msa0568110 | 0.871700 | 5.596321e-67 | -8.615850e-47 |
| Msa0162680 | Msa0570460 | 0.868786 | 5.039482e-66 | -8.615850e-47 |
| Msa0162680 | Msa0580840 | 0.851841 | 6.823976e-61 | -8.615850e-47 |
| Msa0162680 | Msa0615200 | 0.804339 | 2.265483e-49 | -8.615850e-47 |
| Msa0162680 | Msa0650560 | 0.814381 | 1.586176e-51 | -8.615850e-47 |
| Msa0162680 | Msa0652590 | 0.831735 | 1.410018e-55 | -8.615850e-47 |
| Msa0162680 | Msa0652600 | 0.809322 | 2.004007e-50 | -8.615850e-47 |
| Msa0162680 | Msa0657260 | 0.803165 | 3.971532e-49 | -8.615850e-47 |
| Msa0162680 | Msa0657340 | 0.803038 | 4.218983e-49 | -8.615850e-47 |
| Msa0162680 | Msa0676860 | 0.802203 | 6.272606e-49 | -8.615850e-47 |
| Msa0162680 | Msa0694320 | 0.813283 | 2.768341e-51 | -8.615850e-47 |
| Msa0162680 | Msa0699170 | 0.805239 | 1.469487e-49 | -8.615850e-47 |
| Msa0162680 | Msa0701430 | 0.801640 | 8.186577e-49 | -8.615850e-47 |
| Msa0162680 | Msa0701490 | 0.808520 | 2.975161e-50 | -8.615850e-47 |
| Msa0162680 | Msa0701560 | 0.802341 | 5.874718e-49 | -8.615850e-47 |
| Msa0162680 | Msa0704560 | 0.891639 | 3.304559e-74 | -8.615850e-47 |
| Msa0162680 | Msa0716620 | 0.834701 | 2.573632e-56 | -8.615850e-47 |
| Msa0162680 | Msa0740630 | 0.872768 | 2.467240e-67 | -8.615850e-47 |
| Msa0162680 | Msa0744540 | 0.801519 | 8.665870e-49 | -8.615850e-47 |
| Msa0162680 | Msa0744550 | 0.838755 | 2.381416e-57 | -8.615850e-47 |
| Msa0162680 | Msa0744560 | 0.841045 | 6.028731e-58 | -8.615850e-47 |
| Msa0162680 | Msa0746340 | 0.857257 | 1.846308e-62 | -8.615850e-47 |
| Msa0162680 | Msa0758520 | 0.825825 | 3.794669e-54 | -8.615850e-47 |
| Msa0162680 | Msa0758570 | 0.813935 | 1.989743e-51 | -8.615850e-47 |
| Msa0162680 | Msa0781210 | 0.820805 | 5.648446e-53 | -8.615850e-47 |
| Msa0162680 | Msa0790920 | 0.804452 | 2.146029e-49 | -8.615850e-47 |
| Msa0162680 | Msa0793270 | 0.812303 | 4.537900e-51 | -8.615850e-47 |
| Msa0162680 | Msa0795320 | 0.840171 | 1.021307e-57 | -8.615850e-47 |
| Msa0162680 | Msa0804870 | 0.829917 | 3.935105e-55 | -8.615850e-47 |
| Msa0162680 | Msa0820880 | 0.874627 | 5.824764e-68 | -8.615850e-47 |
| Msa0162680 | Msa0826360 | 0.804420 | 2.178530e-49 | -8.615850e-47 |
| Msa0162680 | Msa0826370 | 0.812284 | 4.580085e-51 | -8.615850e-47 |
| Msa0162680 | Msa0838870 | 0.829823 | 4.148308e-55 | -8.615850e-47 |
| Msa0162680 | Msa0848020 | 0.807256 | 5.524338e-50 | -8.615850e-47 |
| Msa0162680 | Msa0859040 | 0.858694 | 6.911265e-63 | -8.615850e-47 |
| Msa0162680 | Msa0865810 | 0.813527 | 2.447131e-51 | -8.615850e-47 |
| Msa0162680 | Msa0865820 | 0.836136 | 1.116559e-56 | -8.615850e-47 |
| Msa0162680 | Msa0865830 | 0.822889 | 1.860386e-53 | -8.615850e-47 |
| Msa0162680 | Msa0921790 | 0.841620 | 4.255279e-58 | -8.615850e-47 |
| Msa0162680 | Msa0945330 | 0.812354 | 4.423557e-51 | -8.615850e-47 |
| Msa0162680 | Msa0960580 | 0.829762 | 4.293399e-55 | -8.615850e-47 |
| Msa0162680 | Msa1025750 | 0.880482 | 5.295531e-70 | -8.615850e-47 |
| Msa0162680 | Msa1027910 | 0.871661 | 5.766043e-67 | -8.615850e-47 |
| Msa0162680 | Msa1030210 | 0.879614 | 1.079645e-69 | -8.615850e-47 |
| Msa0162680 | Msa1030240 | 0.818176 | 2.247227e-52 | -8.615850e-47 |
| Msa0162680 | Msa1031780 | 0.809545 | 1.794916e-50 | -8.615850e-47 |
| Msa0162680 | Msa1035050 | 0.816972 | 4.198489e-52 | -8.615850e-47 |
| Msa0162680 | Msa1064240 | 0.823561 | 1.296034e-53 | -8.615850e-47 |
| Msa0162680 | Msa1064510 | 0.835905 | 1.277978e-56 | -8.615850e-47 |
| Msa0162680 | Msa1069250 | 0.878225 | 3.335865e-69 | -8.615850e-47 |
| Msa0162680 | Msa1075090 | 0.825006 | 5.930081e-54 | -8.615850e-47 |
| Msa0162680 | Msa1080650 | 0.827141 | 1.843185e-54 | -8.615850e-47 |
| Msa0162680 | Msa1084890 | 0.866125 | 3.581951e-65 | -8.615850e-47 |
| Msa0162680 | Msa1089600 | 0.815175 | 1.057409e-51 | -8.615850e-47 |
| Msa0162680 | Msa1095590 | 0.830854 | 2.322069e-55 | -8.615850e-47 |
| Msa0162680 | Msa1102210 | 0.821158 | 4.684000e-53 | -8.615850e-47 |
| Msa0162680 | Msa1109670 | 0.819805 | 9.578589e-53 | -8.615850e-47 |
| Msa0162680 | Msa1110900 | 0.830409 | 2.984946e-55 | -8.615850e-47 |
| Msa0162680 | Msa1118720 | 0.805693 | 1.179960e-49 | -8.615850e-47 |
| Msa0162680 | Msa1120580 | 0.859971 | 2.857924e-63 | -8.615850e-47 |
| Msa0162680 | Msa1126440 | 0.816403 | 5.631617e-52 | -8.615850e-47 |
| Msa0162680 | Msa1136760 | 0.805768 | 1.138312e-49 | -8.615850e-47 |
| Msa0162680 | Msa1142390 | 0.818548 | 1.850448e-52 | -8.615850e-47 |
| Msa0162680 | Msa1153230 | 0.816581 | 5.137229e-52 | -8.615850e-47 |
| Msa0162680 | Msa1154240 | 0.806668 | 7.354923e-50 | -8.615850e-47 |
| Msa0162680 | Msa1157110 | 0.860297 | 2.279411e-63 | -8.615850e-47 |
| Msa0162680 | Msa1171450 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0162680 | Msa1174280 | 0.822750 | 2.004331e-53 | -8.615850e-47 |
| Msa0162680 | Msa1184400 | 0.814398 | 1.571998e-51 | -8.615850e-47 |
| Msa0162680 | Msa1202110 | 0.824310 | 8.650318e-54 | -8.615850e-47 |
| Msa0162680 | Msa1211610 | 0.854913 | 8.965050e-62 | -8.615850e-47 |
| Msa0162680 | Msa1221220 | 0.801171 | 1.021068e-48 | -8.615850e-47 |
| Msa0162680 | Msa1223560 | 0.854018 | 1.627135e-61 | -8.615850e-47 |
| Msa0162680 | Msa1224510 | 0.843085 | 1.740888e-58 | -8.615850e-47 |
| Msa0162680 | Msa1228810 | 0.801595 | 8.360000e-49 | -8.615850e-47 |
| Msa0162680 | Msa1254870 | 0.822912 | 1.837650e-53 | -8.615850e-47 |
| Msa0162680 | Msa1262540 | 0.821745 | 3.429217e-53 | -8.615850e-47 |
| Msa0162680 | Msa1263500 | 0.835489 | 1.628578e-56 | -8.615850e-47 |
| Msa0162680 | Msa1299480 | 0.851895 | 6.587041e-61 | -8.615850e-47 |
| Msa0162680 | Msa1307930 | 0.837291 | 5.668522e-57 | -8.615850e-47 |
| Msa0162680 | Msa1328430 | 0.824523 | 7.707452e-54 | -8.615850e-47 |
| Msa0162680 | Msa1331950 | 0.817309 | 3.524773e-52 | -8.615850e-47 |
| Msa0162680 | Msa1333700 | 0.850544 | 1.585519e-60 | -8.615850e-47 |
| Msa0162680 | Msa1349830 | 0.835036 | 2.119240e-56 | -8.615850e-47 |
| Msa0162680 | Msa1359770 | 0.817879 | 2.622479e-52 | -8.615850e-47 |
| Msa0162680 | Msa1361710 | 0.860074 | 2.660520e-63 | -8.615850e-47 |
| Msa0162680 | Msa1366480 | 0.803899 | 2.796404e-49 | -8.615850e-47 |
| Msa0162680 | Msa1369320 | 0.834624 | 2.690702e-56 | -8.615850e-47 |
| Msa0162680 | Msa1377050 | 0.881923 | 1.602172e-70 | -8.615850e-47 |
| Msa0162680 | Msa1387610 | 0.866149 | 3.519984e-65 | -8.615850e-47 |
| Msa0162680 | Msa1396160 | 0.800934 | 1.141667e-48 | -8.615850e-47 |
| Msa0162680 | Msa1398120 | 0.837045 | 6.552531e-57 | -8.615850e-47 |
| Msa0162680 | Msa1399930 | 0.842245 | 2.908945e-58 | -8.615850e-47 |
| Msa0162680 | Msa1401110 | 0.826101 | 3.263268e-54 | -8.615850e-47 |
| Msa0162680 | Msa1405500 | 0.817445 | 3.286100e-52 | -8.615850e-47 |
| Msa0162680 | Msa1413800 | 0.845867 | 3.105796e-59 | -8.615850e-47 |
| Msa0162680 | Msa1422230 | 0.839797 | 1.278023e-57 | -8.615850e-47 |
| Msa0162680 | Msa1427000 | 0.896075 | 5.225158e-76 | -8.615850e-47 |
| Msa0162680 | Msa1432180 | 0.814131 | 1.801397e-51 | -8.615850e-47 |
| Msa0162680 | Msa1435320 | 0.824017 | 1.013536e-53 | -8.615850e-47 |
| Msa0162680 | Msa1436090 | 0.844346 | 8.001226e-59 | -8.615850e-47 |
| Msa0162680 | Msa1438160 | 0.876962 | 9.194580e-69 | -8.615850e-47 |
| Msa0162680 | Msa1439780 | 0.891428 | 4.009314e-74 | -8.615850e-47 |
| Msa0162680 | Msa1443400 | 0.821455 | 4.000813e-53 | -8.615850e-47 |
| Msa0162680 | Msa1448040 | 0.821135 | 4.741534e-53 | -8.615850e-47 |
| Msa0162680 | Msa1449470 | 0.856172 | 3.850475e-62 | -8.615850e-47 |
| Msa0162680 | Msa1451990 | 0.800107 | 1.683383e-48 | -8.615850e-47 |
| Msa0162680 | Msa1453600 | 0.860422 | 2.088764e-63 | -8.615850e-47 |
| Msa0162680 | Msa1459920 | 0.808145 | 3.576365e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162680 | MtrunA17_Chr1g0177121 | 99.020 | 306 | 3 | 0 | 1 | 306 | 1 | 306 | 0.0 | 623 |
| Msa0162680 | MtrunA17_Chr7g0267551 | 68.990 | 287 | 76 | 2 | 1 | 287 | 1 | 274 | 7.58e-144 | 407 |
| Msa0162680 | MtrunA17_Chr1g0177131 | 65.529 | 293 | 93 | 3 | 1 | 287 | 1 | 291 | 5.37e-139 | 396 |
| Msa0162680 | MtrunA17_Chr4g0048121 | 59.028 | 288 | 109 | 3 | 1 | 287 | 1 | 280 | 4.09e-122 | 352 |
| Msa0162680 | MtrunA17_Chr2g0281201 | 58.400 | 250 | 104 | 0 | 55 | 304 | 1 | 250 | 4.99e-114 | 330 |
| Msa0162680 | MtrunA17_Chr5g0398891 | 43.243 | 296 | 157 | 3 | 1 | 285 | 1 | 296 | 1.69e-85 | 259 |
| Msa0162680 | MtrunA17_Chr6g0461261 | 44.983 | 289 | 148 | 3 | 1 | 287 | 1 | 280 | 9.04e-81 | 247 |
| Msa0162680 | MtrunA17_Chr2g0322801 | 41.958 | 286 | 162 | 2 | 1 | 285 | 1 | 283 | 1.43e-72 | 226 |
| Msa0162680 | MtrunA17_Chr5g0404401 | 39.649 | 285 | 160 | 4 | 1 | 283 | 1 | 275 | 2.03e-61 | 197 |
| Msa0162680 | MtrunA17_Chr8g0370611 | 36.667 | 120 | 74 | 2 | 1 | 119 | 1 | 119 | 3.55e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162680 | AT3G11820.1 | 72.587 | 259 | 71 | 0 | 27 | 285 | 30 | 288 | 1.29e-140 | 400 |
| Msa0162680 | AT3G11820.2 | 73.152 | 257 | 69 | 0 | 29 | 285 | 1 | 257 | 2.30e-140 | 399 |
| Msa0162680 | AT1G61290.1 | 55.814 | 301 | 125 | 1 | 1 | 301 | 1 | 293 | 3.27e-125 | 360 |
| Msa0162680 | AT1G61290.2 | 55.814 | 301 | 125 | 1 | 1 | 301 | 1 | 293 | 3.27e-125 | 360 |
| Msa0162680 | AT1G11250.1 | 57.491 | 287 | 109 | 1 | 1 | 287 | 1 | 274 | 2.14e-121 | 350 |
| Msa0162680 | AT3G52400.1 | 61.856 | 291 | 105 | 3 | 1 | 287 | 1 | 289 | 1.90e-119 | 347 |
| Msa0162680 | AT4G03330.1 | 53.268 | 306 | 134 | 2 | 1 | 304 | 1 | 299 | 3.51e-111 | 325 |
| Msa0162680 | AT3G03800.2 | 44.599 | 287 | 149 | 4 | 1 | 285 | 1 | 279 | 1.41e-78 | 241 |
| Msa0162680 | AT3G03800.1 | 44.599 | 287 | 149 | 4 | 1 | 285 | 1 | 279 | 1.41e-78 | 241 |
| Msa0162680 | AT1G08560.1 | 41.980 | 293 | 155 | 4 | 1 | 285 | 1 | 286 | 1.26e-76 | 236 |
| Msa0162680 | AT5G08080.1 | 45.965 | 285 | 147 | 2 | 1 | 285 | 1 | 278 | 1.27e-71 | 224 |
| Msa0162680 | AT5G08080.4 | 45.965 | 285 | 147 | 2 | 1 | 285 | 1 | 278 | 1.27e-71 | 224 |
| Msa0162680 | AT5G08080.3 | 44.257 | 296 | 147 | 4 | 1 | 285 | 1 | 289 | 1.07e-69 | 219 |
| Msa0162680 | AT2G18260.2 | 35.985 | 264 | 162 | 2 | 40 | 303 | 46 | 302 | 1.55e-57 | 187 |
| Msa0162680 | AT2G18260.1 | 35.985 | 264 | 162 | 2 | 40 | 303 | 46 | 302 | 1.55e-57 | 187 |
| Msa0162680 | AT5G08080.5 | 42.995 | 207 | 111 | 2 | 1 | 207 | 1 | 200 | 6.99e-38 | 134 |
| Msa0162680 | AT5G08080.2 | 42.995 | 207 | 111 | 2 | 1 | 207 | 1 | 200 | 6.99e-38 | 134 |
Find 110 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCTCTCTTGAATTTCT+TGG | 0.088352 | 1_4:+39955716 | None:intergenic |
| GGAGCTTCACCAAGTGTTTA+TGG | 0.187321 | 1_4:-39955662 | Msa0162680:CDS |
| GTGCAACATGTAAATTAAAT+TGG | 0.196563 | 1_4:+39957477 | None:intergenic |
| CTCCAATTCACATGCCAAAA+TGG | 0.210351 | 1_4:+39955174 | None:intergenic |
| AGCCACGTCAGCATCCATTT+TGG | 0.265957 | 1_4:+39956931 | None:intergenic |
| GACTATTTCAAATTATAATA+AGG | 0.289670 | 1_4:+39957455 | None:intergenic |
| CAGAGGATATTTGTTGTCTA+AGG | 0.290767 | 1_4:+39956732 | None:intergenic |
| TTCATTCATATTCTCTAATC+AGG | 0.303164 | 1_4:-39957287 | Msa0162680:five_prime_UTR |
| TCCACTTTCTGCTATTCATT+TGG | 0.309384 | 1_4:+39955521 | None:intergenic |
| GATTTGGGATTTATATATAA+TGG | 0.313758 | 1_4:+39957362 | None:intergenic |
| ATGAAGAGAATTATGGATTT+GGG | 0.320130 | 1_4:+39957347 | None:intergenic |
| TAATGTAATGAAGAGAATTA+TGG | 0.322889 | 1_4:+39957340 | None:intergenic |
| GTTTATGGACATGTCTGTTT+TGG | 0.324253 | 1_4:-39955647 | Msa0162680:CDS |
| AATGAAGAGAATTATGGATT+TGG | 0.331074 | 1_4:+39957346 | None:intergenic |
| TTAGAGAATATGAATGAATA+AGG | 0.332902 | 1_4:+39957292 | None:intergenic |
| TCCTCTCATGGGAGACTCTA+AGG | 0.337274 | 1_4:+39956996 | None:intergenic |
| ATATTATAATATTATAATCT+TGG | 0.344798 | 1_4:-39955406 | Msa0162680:three_prime_UTR |
| GAAGGATATTCGCTCCAAAA+TGG | 0.357939 | 1_4:-39956945 | Msa0162680:CDS |
| TGTTTGCTCTACCTTGTTGT+TGG | 0.360573 | 1_4:+39955752 | None:intergenic |
| CTTGATCCGAGTTGCGGAAC+CGG | 0.374505 | 1_4:+39957158 | None:intergenic |
| TGGTTTGAGGAAGAAGCTTA+AGG | 0.379675 | 1_4:-39956777 | Msa0162680:CDS |
| AGTAGGAGTTTGCCTGGTGC+TGG | 0.388193 | 1_4:-39956842 | Msa0162680:CDS |
| GAGTTTGCCTGGTGCTGGAC+CGG | 0.392987 | 1_4:-39956837 | Msa0162680:CDS |
| GAAGGGTCTTGCTCCTCTCA+TGG | 0.411456 | 1_4:+39956984 | None:intergenic |
| ATTAAATTTATATGTGTGGC+AGG | 0.413330 | 1_4:-39955096 | Msa0162680:three_prime_UTR |
| TCAATCACAAGGTGATCAAT+TGG | 0.422910 | 1_4:-39955623 | Msa0162680:CDS |
| CAAACTCCTACTAGCCTCAT+TGG | 0.425618 | 1_4:+39956853 | None:intergenic |
| TGCTGGACCGGGTTCGTCCT+CGG | 0.427607 | 1_4:-39956825 | Msa0162680:CDS |
| TCACAGCTTTCGCGCTGTGA+AGG | 0.430417 | 1_4:+39956966 | None:intergenic |
| ACACCGGTTTGTGCGGTGTT+CGG | 0.434011 | 1_4:+39957094 | None:intergenic |
| TATTCTCCGGCTCTTTCTCC+CGG | 0.436699 | 1_4:-39957177 | Msa0162680:CDS |
| TCCAATTCACATGCCAAAAT+GGG | 0.446182 | 1_4:+39955175 | None:intergenic |
| GGCATGTGAATTGGAGGAGA+AGG | 0.454810 | 1_4:-39955167 | Msa0162680:three_prime_UTR |
| AGGATATAGATGAATGTTCA+TGG | 0.464081 | 1_4:-39955147 | Msa0162680:three_prime_UTR |
| AAGATGAATGATTTATTCTC+CGG | 0.470296 | 1_4:-39957190 | Msa0162680:CDS |
| CACAGCTTTCGCGCTGTGAA+GGG | 0.471963 | 1_4:+39956967 | None:intergenic |
| ATCACATGGTGATGGTTGTC+CGG | 0.480288 | 1_4:+39957130 | None:intergenic |
| TTTCTCCCGGTTCCGCAACT+CGG | 0.484658 | 1_4:-39957164 | Msa0162680:CDS |
| AGTTTGCCTGGTGCTGGACC+GGG | 0.485224 | 1_4:-39956836 | Msa0162680:CDS |
| AGGTGTTAAAGAGGAGTTGA+AGG | 0.487492 | 1_4:-39957041 | Msa0162680:CDS |
| GACGAACCCGGTCCAGCACC+AGG | 0.494596 | 1_4:+39956830 | None:intergenic |
| GACCGGGTTCGTCCTCGGAC+CGG | 0.495705 | 1_4:-39956820 | Msa0162680:CDS |
| AAGGGTCTTGCTCCTCTCAT+GGG | 0.499489 | 1_4:+39956985 | None:intergenic |
| AGAAGTCGAAGGTGTTAAAG+AGG | 0.506880 | 1_4:-39957050 | Msa0162680:CDS |
| TTATAATATTATAATCTTGG+TGG | 0.509256 | 1_4:-39955403 | Msa0162680:three_prime_UTR |
| CTAATTCGTATGTTAGAGGT+GGG | 0.510462 | 1_4:-39955573 | Msa0162680:CDS |
| CGTGCTAATTCGTATGTTAG+AGG | 0.512054 | 1_4:-39955577 | Msa0162680:CDS |
| TCCTACTAGCCTCATTGGAC+CGG | 0.514248 | 1_4:+39956858 | None:intergenic |
| TCGCCGAACACCGCACAAAC+CGG | 0.514472 | 1_4:-39957097 | Msa0162680:CDS |
| ATAATAATAAAGGATGGAAG+TGG | 0.518740 | 1_4:+39957428 | None:intergenic |
| CTCCAAAATGGATGCTGACG+TGG | 0.519276 | 1_4:-39956933 | Msa0162680:CDS |
| GTCCGGTCCGAGGACGAACC+CGG | 0.520586 | 1_4:+39956818 | None:intergenic |
| GAGGCTAGTAGGAGTTTGCC+TGG | 0.520730 | 1_4:-39956848 | Msa0162680:CDS |
| TCCTAGCAACATGCAACTGT+TGG | 0.522312 | 1_4:+39955548 | None:intergenic |
| TAGTTGACCATGACCATCAT+GGG | 0.525131 | 1_4:+39955228 | None:intergenic |
| ACCGGTCCAATGAGGCTAGT+AGG | 0.527254 | 1_4:-39956859 | Msa0162680:CDS |
| TACAGTTTCTCTATATTCAG+AGG | 0.527444 | 1_4:+39956715 | None:intergenic |
| TTGATCCGAGTTGCGGAACC+GGG | 0.529003 | 1_4:+39957159 | None:intergenic |
| GAAGAAGCTTAAGGATTCCA+TGG | 0.529595 | 1_4:-39956768 | Msa0162680:CDS |
| AATAATGAGGAGAATTATGA+TGG | 0.530230 | 1_4:+39955489 | None:intergenic |
| TCATGCTGCCTTGACAACTC+TGG | 0.535718 | 1_4:-39955337 | Msa0162680:three_prime_UTR |
| ACCGGTCAAGTGCCTCGAGC+CGG | 0.535814 | 1_4:+39956876 | None:intergenic |
| AGAGATAGAGAGAAATCTCA+TGG | 0.536636 | 1_4:-39955683 | Msa0162680:CDS |
| TCCGGCTCGAGGCACTTGAC+CGG | 0.547953 | 1_4:-39956877 | Msa0162680:CDS |
| GTTTATTAAATTTATATGTG+TGG | 0.551194 | 1_4:-39955100 | Msa0162680:three_prime_UTR |
| TTTGTCATCAGGATTCTCTC+CGG | 0.554404 | 1_4:+39956670 | None:intergenic |
| TATACATACCAGTGGAAATG+AGG | 0.558156 | 1_4:+39956636 | None:intergenic |
| AAGGTTGTTAAAGCTATCCA+TGG | 0.560718 | 1_4:+39956751 | None:intergenic |
| ACCAAATGAATAGCAGAAAG+TGG | 0.561512 | 1_4:-39955522 | Msa0162680:CDS |
| GGTGGCTATGACTAGTTCAA+AGG | 0.564085 | 1_4:-39955385 | Msa0162680:three_prime_UTR |
| CGTAGATACTATACTGTCAC+CGG | 0.569775 | 1_4:-39956689 | Msa0162680:CDS |
| CAGACATGTCCATAAACACT+TGG | 0.571715 | 1_4:+39955653 | None:intergenic |
| GTTGACCTCCTCATTTCCAC+TGG | 0.573133 | 1_4:-39956644 | Msa0162680:intron |
| GCTAATTCGTATGTTAGAGG+TGG | 0.575753 | 1_4:-39955574 | Msa0162680:CDS |
| TCCAACAGTTGCATGTTGCT+AGG | 0.578150 | 1_4:-39955549 | Msa0162680:CDS |
| GCGGAACCGGGAGAAAGAGC+CGG | 0.578923 | 1_4:+39957171 | None:intergenic |
| TAATAATAAAGGATGGAAGT+GGG | 0.579495 | 1_4:+39957429 | None:intergenic |
| ACAAGGTAGAGCAAACATCA+TGG | 0.584967 | 1_4:-39955746 | Msa0162680:CDS |
| CATCTGTGGTGAGTGGTTTG+AGG | 0.587043 | 1_4:-39956790 | Msa0162680:CDS |
| GTAGTTGACCATGACCATCA+TGG | 0.590362 | 1_4:+39955227 | None:intergenic |
| TCACAGCGCGAAAGCTGTGA+AGG | 0.594302 | 1_4:-39956963 | Msa0162680:CDS |
| TCACCACAGATGTTCTAGTC+CGG | 0.594304 | 1_4:+39956801 | None:intergenic |
| AAGCTAAACTTGTTAAACTC+CGG | 0.596720 | 1_4:-39956895 | Msa0162680:CDS |
| GCCTTAGAGTCTCCCATGAG+AGG | 0.597298 | 1_4:-39956997 | Msa0162680:CDS |
| CTAGAACCCCATGATGGTCA+TGG | 0.600424 | 1_4:-39955235 | Msa0162680:three_prime_UTR |
| ATACCATGCCAGAGTTGTCA+AGG | 0.609171 | 1_4:+39955329 | None:intergenic |
| GAATTTGTCAAGATGAACAC+CGG | 0.611672 | 1_4:+39957078 | None:intergenic |
| CTGCCTTGACAACTCTGGCA+TGG | 0.613990 | 1_4:-39955332 | Msa0162680:three_prime_UTR |
| ACATTTCGATCACATGGTGA+TGG | 0.618806 | 1_4:+39957122 | None:intergenic |
| GCGAAACTTGATCCGAGTTG+CGG | 0.621819 | 1_4:+39957152 | None:intergenic |
| AAATTCTTTGAAGAAGTCGA+AGG | 0.621972 | 1_4:-39957061 | Msa0162680:CDS |
| GCGATGACATTTCGATCACA+TGG | 0.626915 | 1_4:+39957116 | None:intergenic |
| CAACTCGGATCAAGTTTCGC+CGG | 0.628630 | 1_4:-39957149 | Msa0162680:CDS |
| TGATTTCTAGAACCCCATGA+TGG | 0.630801 | 1_4:-39955241 | Msa0162680:three_prime_UTR |
| AGTGGAAATGAGGAGGTCAA+CGG | 0.635845 | 1_4:+39956646 | None:intergenic |
| CTATGATCAAGATAATAATG+AGG | 0.639529 | 1_4:+39955476 | None:intergenic |
| ACGAATTAGCACGTGCCACG+TGG | 0.646541 | 1_4:+39955587 | None:intergenic |
| GGCACTTGACCGGTCCAATG+AGG | 0.650152 | 1_4:-39956867 | Msa0162680:CDS |
| GGTCATGGTCAACTACCTTG+AGG | 0.658100 | 1_4:-39955220 | Msa0162680:three_prime_UTR |
| CAATCCAAGAAATTCAAGAG+AGG | 0.658855 | 1_4:-39955720 | Msa0162680:CDS |
| ACTTGTTAAACTCCGGCTCG+AGG | 0.660615 | 1_4:-39956888 | Msa0162680:CDS |
| TAATTCGTATGTTAGAGGTG+GGG | 0.661673 | 1_4:-39955572 | Msa0162680:CDS |
| ACTAGAACATCTGTGGTGAG+TGG | 0.667098 | 1_4:-39956797 | Msa0162680:CDS |
| ACATACCAGTGGAAATGAGG+AGG | 0.671780 | 1_4:+39956639 | None:intergenic |
| AAGATGAACACCGGTTTGTG+CGG | 0.675270 | 1_4:+39957087 | None:intergenic |
| GGACCGGACTAGAACATCTG+TGG | 0.682428 | 1_4:-39956804 | Msa0162680:CDS |
| AGATGTTCTAGTCCGGTCCG+AGG | 0.692794 | 1_4:+39956808 | None:intergenic |
| AGTTGACCATGACCATCATG+GGG | 0.726314 | 1_4:+39955229 | None:intergenic |
| ATATAGATGAATGTTCATGG+TGG | 0.734211 | 1_4:-39955144 | Msa0162680:three_prime_UTR |
| GGATAATATTGAAAGCCACG+TGG | 0.768363 | 1_4:-39955602 | Msa0162680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTGAAAAATAATAATAA+AGG | + | chr1_4:39955109-39955128 | None:intergenic | 10.0% |
| !! | TTAAATTTCATAAAGATTTA+TGG | + | chr1_4:39956103-39956122 | None:intergenic | 10.0% |
| !! | TATAACTTATATAAGTATAT+TGG | + | chr1_4:39956553-39956572 | None:intergenic | 10.0% |
| !! | CTGAATAAAAAAAATATATA+AGG | + | chr1_4:39957500-39957519 | None:intergenic | 10.0% |
| !! | GACTATTTCAAATTATAATA+AGG | + | chr1_4:39955072-39955091 | None:intergenic | 15.0% |
| !! | TGAAAAATAATAATAAAGGA+TGG | + | chr1_4:39955105-39955124 | None:intergenic | 15.0% |
| !!! | ATACATTTTAATAATTCATG+TGG | - | chr1_4:39955981-39956000 | Msa0162680:intron | 15.0% |
| !!! | TGTAGATTAATCTATTTTTA+AGG | - | chr1_4:39956064-39956083 | Msa0162680:intron | 15.0% |
| !!! | TACTTGATTCATTTATTTTT+AGG | + | chr1_4:39956479-39956498 | None:intergenic | 15.0% |
| !! | AATAAAAAGAAACTTAAGTA+TGG | + | chr1_4:39956521-39956540 | None:intergenic | 15.0% |
| !! | TAAGTTATATGTATAAAATC+CGG | - | chr1_4:39956564-39956583 | Msa0162680:intron | 15.0% |
| !! | TTATAATATTATAATCTTGG+TGG | - | chr1_4:39957121-39957140 | Msa0162680:CDS | 15.0% |
| !!! | ATATTTTTTCATATATTGGT+TGG | - | chr1_4:39957225-39957244 | Msa0162680:five_prime_UTR | 15.0% |
| !! | GTTTATTAAATTTATATGTG+TGG | - | chr1_4:39957424-39957443 | Msa0162680:five_prime_UTR | 15.0% |
| !!! | GATTTGGGATTTATATATAA+TGG | + | chr1_4:39955165-39955184 | None:intergenic | 20.0% |
| !! | TAATGTAATGAAGAGAATTA+TGG | + | chr1_4:39955187-39955206 | None:intergenic | 20.0% |
| !! | TTAGAGAATATGAATGAATA+AGG | + | chr1_4:39955235-39955254 | None:intergenic | 20.0% |
| !!! | ATTTTAATAATTCATGTGGA+AGG | - | chr1_4:39955985-39956004 | Msa0162680:intron | 20.0% |
| !!! | TTTTTATTTCAGAATCGAAA+GGG | + | chr1_4:39956171-39956190 | None:intergenic | 20.0% |
| !!! | ATTTTTATTTCAGAATCGAA+AGG | + | chr1_4:39956172-39956191 | None:intergenic | 20.0% |
| !!! | ATCTTAGTTAATTTTCTTTC+CGG | - | chr1_4:39956260-39956279 | Msa0162680:intron | 20.0% |
| !!! | AATGGTTTTAGATTCAATTT+CGG | + | chr1_4:39956408-39956427 | None:intergenic | 20.0% |
| !!! | TTGAAGTGAAAGTTTTTAAT+AGG | - | chr1_4:39956622-39956641 | Msa0162680:intron | 20.0% |
| !!! | ACATCTTTTTAATGTAACAT+AGG | - | chr1_4:39956719-39956738 | Msa0162680:CDS | 20.0% |
| !!! | AACTATTTTTTAAGGACAAT+AGG | + | chr1_4:39957079-39957098 | None:intergenic | 20.0% |
| !!! | AGTCTCAAAACTATTTTTTA+AGG | + | chr1_4:39957087-39957106 | None:intergenic | 20.0% |
| ! | GTGCAACATGTAAATTAAAT+TGG | + | chr1_4:39955050-39955069 | None:intergenic | 25.0% |
| ! | TAATAATAAAGGATGGAAGT+GGG | + | chr1_4:39955098-39955117 | None:intergenic | 25.0% |
| ! | ATAATAATAAAGGATGGAAG+TGG | + | chr1_4:39955099-39955118 | None:intergenic | 25.0% |
| ! | ATGAAGAGAATTATGGATTT+GGG | + | chr1_4:39955180-39955199 | None:intergenic | 25.0% |
| ! | AATGAAGAGAATTATGGATT+TGG | + | chr1_4:39955181-39955200 | None:intergenic | 25.0% |
| ! | TTCATTCATATTCTCTAATC+AGG | - | chr1_4:39955237-39955256 | Msa0162680:three_prime_UTR | 25.0% |
| ! | AAGAAAAAATAGAGAAGAGA+AGG | + | chr1_4:39955303-39955322 | None:intergenic | 25.0% |
| ! | AAGATGAATGATTTATTCTC+CGG | - | chr1_4:39955334-39955353 | Msa0162680:three_prime_UTR | 25.0% |
| !! | GTGATAATGTTGATATTGTT+AGG | - | chr1_4:39956368-39956387 | Msa0162680:intron | 25.0% |
| ! | AACTTACACATACAACTAAA+TGG | + | chr1_4:39956426-39956445 | None:intergenic | 25.0% |
| ! | AAAAAAGAAACCATATACTC+CGG | + | chr1_4:39956586-39956605 | None:intergenic | 25.0% |
| !! | AAGTGAAAGTTTTTAATAGG+AGG | - | chr1_4:39956625-39956644 | Msa0162680:intron | 25.0% |
| ! | AATAATGAGGAGAATTATGA+TGG | + | chr1_4:39957038-39957057 | None:intergenic | 25.0% |
| ! | CTATGATCAAGATAATAATG+AGG | + | chr1_4:39957051-39957070 | None:intergenic | 25.0% |
| !!! | TAGTTTTGAGACTTTTCAAA+TGG | - | chr1_4:39957094-39957113 | Msa0162680:CDS | 25.0% |
| !!! | AGTTTTGAGACTTTTCAAAT+GGG | - | chr1_4:39957095-39957114 | Msa0162680:CDS | 25.0% |
| !!! | TTTTCATATATTGGTTGGTT+TGG | - | chr1_4:39957230-39957249 | Msa0162680:five_prime_UTR | 25.0% |
| !! | TCAAGAATTTTATCCCATTT+TGG | - | chr1_4:39957336-39957355 | Msa0162680:five_prime_UTR | 25.0% |
| ! | ATTAAATTTATATGTGTGGC+AGG | - | chr1_4:39957428-39957447 | Msa0162680:five_prime_UTR | 25.0% |
| !!! | GAAGGTTTTGATACTTTTTC+TGG | + | chr1_4:39955285-39955304 | None:intergenic | 30.0% |
| ! | AAATTCTTTGAAGAAGTCGA+AGG | - | chr1_4:39955463-39955482 | Msa0162680:CDS | 30.0% |
| !! | AAGCTAAACTTGTTAAACTC+CGG | - | chr1_4:39955629-39955648 | Msa0162680:CDS | 30.0% |
| TACAGTTTCTCTATATTCAG+AGG | + | chr1_4:39955812-39955831 | None:intergenic | 30.0% | |
| TGATGATATATACATACCAG+TGG | + | chr1_4:39955899-39955918 | None:intergenic | 30.0% | |
| ATGTACCTTCATACAACTTT+GGG | - | chr1_4:39956228-39956247 | Msa0162680:intron | 30.0% | |
| AAAAACCCAAAGTTGTATGA+AGG | + | chr1_4:39956236-39956255 | None:intergenic | 30.0% | |
| TCAAACAGAGTAATTTGATC+CGG | + | chr1_4:39956282-39956301 | None:intergenic | 30.0% | |
| TAATGTTGATATTGTTAGGC+TGG | - | chr1_4:39956372-39956391 | Msa0162680:intron | 30.0% | |
| TTAGATTCAATTTCGGTTGA+AGG | + | chr1_4:39956401-39956420 | None:intergenic | 30.0% | |
| TTGTATGTGTAAGTTTCAGA+TGG | - | chr1_4:39956431-39956450 | Msa0162680:intron | 30.0% | |
| TGTATAAAATCCGGAGTATA+TGG | - | chr1_4:39956573-39956592 | Msa0162680:intron | 30.0% | |
| ! | TGAAAGTTTTTAATAGGAGG+TGG | - | chr1_4:39956628-39956647 | Msa0162680:intron | 30.0% |
| AGGATATAGATGAATGTTCA+TGG | - | chr1_4:39957377-39957396 | Msa0162680:five_prime_UTR | 30.0% | |
| ATATAGATGAATGTTCATGG+TGG | - | chr1_4:39957380-39957399 | Msa0162680:five_prime_UTR | 30.0% | |
| ! | GGTGTAATTCTTTTGTACAA+TGG | + | chr1_4:39957479-39957498 | None:intergenic | 30.0% |
| GAATTTGTCAAGATGAACAC+CGG | + | chr1_4:39955449-39955468 | None:intergenic | 35.0% | |
| AAGGTTGTTAAAGCTATCCA+TGG | + | chr1_4:39955776-39955795 | None:intergenic | 35.0% | |
| !! | CAGAGGATATTTGTTGTCTA+AGG | + | chr1_4:39955795-39955814 | None:intergenic | 35.0% |
| TATACATACCAGTGGAAATG+AGG | + | chr1_4:39955891-39955910 | None:intergenic | 35.0% | |
| !! | CATGTGGAAGGATTTTGAAA+AGG | - | chr1_4:39955997-39956016 | Msa0162680:intron | 35.0% |
| TTGAAAAGGAAAGAGAAGAG+AGG | - | chr1_4:39956011-39956030 | Msa0162680:intron | 35.0% | |
| TGAAAAGGAAAGAGAAGAGA+GGG | - | chr1_4:39956012-39956031 | Msa0162680:intron | 35.0% | |
| !! | TGAAGGTACATGGAGAATTT+TGG | + | chr1_4:39956219-39956238 | None:intergenic | 35.0% |
| ! | CAAAGTTGTATGAAGGTACA+TGG | + | chr1_4:39956229-39956248 | None:intergenic | 35.0% |
| CATGTACCTTCATACAACTT+TGG | - | chr1_4:39956227-39956246 | Msa0162680:intron | 35.0% | |
| ATCACTTGAGCTGAATCTTA+TGG | + | chr1_4:39956353-39956372 | None:intergenic | 35.0% | |
| CAAAAAGCAATCCAACAACA+AGG | - | chr1_4:39956761-39956780 | Msa0162680:CDS | 35.0% | |
| CAATCCAAGAAATTCAAGAG+AGG | - | chr1_4:39956804-39956823 | Msa0162680:CDS | 35.0% | |
| AGAGATAGAGAGAAATCTCA+TGG | - | chr1_4:39956841-39956860 | Msa0162680:CDS | 35.0% | |
| ! | GTTTATGGACATGTCTGTTT+TGG | - | chr1_4:39956877-39956896 | Msa0162680:CDS | 35.0% |
| !!! | TCTGTTTTGGTTCAATCACA+AGG | - | chr1_4:39956890-39956909 | Msa0162680:CDS | 35.0% |
| TCAATCACAAGGTGATCAAT+TGG | - | chr1_4:39956901-39956920 | Msa0162680:CDS | 35.0% | |
| CTAATTCGTATGTTAGAGGT+GGG | - | chr1_4:39956951-39956970 | Msa0162680:CDS | 35.0% | |
| TAATTCGTATGTTAGAGGTG+GGG | - | chr1_4:39956952-39956971 | Msa0162680:CDS | 35.0% | |
| ACCAAATGAATAGCAGAAAG+TGG | - | chr1_4:39957002-39957021 | Msa0162680:CDS | 35.0% | |
| TCCACTTTCTGCTATTCATT+TGG | + | chr1_4:39957006-39957025 | None:intergenic | 35.0% | |
| !!! | TCTTGACTAGTTTTTCCTCA+AGG | + | chr1_4:39957322-39957341 | None:intergenic | 35.0% |
| TCCAATTCACATGCCAAAAT+GGG | + | chr1_4:39957352-39957371 | None:intergenic | 35.0% | |
| ACATTTCGATCACATGGTGA+TGG | + | chr1_4:39955405-39955424 | None:intergenic | 40.0% | |
| !! | AGAAGTCGAAGGTGTTAAAG+AGG | - | chr1_4:39955474-39955493 | Msa0162680:CDS | 40.0% |
| AGGTGTTAAAGAGGAGTTGA+AGG | - | chr1_4:39955483-39955502 | Msa0162680:CDS | 40.0% | |
| GAAGGATATTCGCTCCAAAA+TGG | - | chr1_4:39955579-39955598 | Msa0162680:CDS | 40.0% | |
| TGGTTTGAGGAAGAAGCTTA+AGG | - | chr1_4:39955747-39955766 | Msa0162680:CDS | 40.0% | |
| GAAGAAGCTTAAGGATTCCA+TGG | - | chr1_4:39955756-39955775 | Msa0162680:CDS | 40.0% | |
| CGTAGATACTATACTGTCAC+CGG | - | chr1_4:39955835-39955854 | Msa0162680:intron | 40.0% | |
| TTTGTCATCAGGATTCTCTC+CGG | + | chr1_4:39955857-39955876 | None:intergenic | 40.0% | |
| ! | AGGTACATGGAGAATTTTGG+AGG | + | chr1_4:39956216-39956235 | None:intergenic | 40.0% |
| GGTGTTTACCACTTCGTTTA+CGG | - | chr1_4:39956452-39956471 | Msa0162680:intron | 40.0% | |
| !! | TTTTAGGTCCGTAAACGAAG+TGG | + | chr1_4:39956463-39956482 | None:intergenic | 40.0% |
| ! | TGTTTGCTCTACCTTGTTGT+TGG | + | chr1_4:39956775-39956794 | None:intergenic | 40.0% |
| ACAAGGTAGAGCAAACATCA+TGG | - | chr1_4:39956778-39956797 | Msa0162680:CDS | 40.0% | |
| CATGCCTCTCTTGAATTTCT+TGG | + | chr1_4:39956811-39956830 | None:intergenic | 40.0% | |
| CAGACATGTCCATAAACACT+TGG | + | chr1_4:39956874-39956893 | None:intergenic | 40.0% | |
| GGATAATATTGAAAGCCACG+TGG | - | chr1_4:39956922-39956941 | Msa0162680:CDS | 40.0% | |
| CGTGCTAATTCGTATGTTAG+AGG | - | chr1_4:39956947-39956966 | Msa0162680:CDS | 40.0% | |
| GCTAATTCGTATGTTAGAGG+TGG | - | chr1_4:39956950-39956969 | Msa0162680:CDS | 40.0% | |
| !! | TGATTTCTAGAACCCCATGA+TGG | - | chr1_4:39957283-39957302 | Msa0162680:five_prime_UTR | 40.0% |
| TAGTTGACCATGACCATCAT+GGG | + | chr1_4:39957299-39957318 | None:intergenic | 40.0% | |
| !! | TCCCATTTTGGCATGTGAAT+TGG | - | chr1_4:39957348-39957367 | Msa0162680:five_prime_UTR | 40.0% |
| CTCCAATTCACATGCCAAAA+TGG | + | chr1_4:39957353-39957372 | None:intergenic | 40.0% | |
| !! | CATTTTGGCATGTGAATTGG+AGG | - | chr1_4:39957351-39957370 | Msa0162680:five_prime_UTR | 40.0% |
| !! | GCAGGAGTTCAATTGTTTTG+CGG | - | chr1_4:39957446-39957465 | Msa0162680:five_prime_UTR | 40.0% |
| !! | CAGGAGTTCAATTGTTTTGC+GGG | - | chr1_4:39957447-39957466 | Msa0162680:five_prime_UTR | 40.0% |
| !! | ATCACATGGTGATGGTTGTC+CGG | + | chr1_4:39955397-39955416 | None:intergenic | 45.0% |
| GCGATGACATTTCGATCACA+TGG | + | chr1_4:39955411-39955430 | None:intergenic | 45.0% | |
| !! | AAGATGAACACCGGTTTGTG+CGG | + | chr1_4:39955440-39955459 | None:intergenic | 45.0% |
| ! | CAAACTCCTACTAGCCTCAT+TGG | + | chr1_4:39955674-39955693 | None:intergenic | 45.0% |
| TCACCACAGATGTTCTAGTC+CGG | + | chr1_4:39955726-39955745 | None:intergenic | 45.0% | |
| ACTAGAACATCTGTGGTGAG+TGG | - | chr1_4:39955727-39955746 | Msa0162680:CDS | 45.0% | |
| !! | AGGTCAACGGTTTTGTCATC+AGG | + | chr1_4:39955868-39955887 | None:intergenic | 45.0% |
| AGTGGAAATGAGGAGGTCAA+CGG | + | chr1_4:39955881-39955900 | None:intergenic | 45.0% | |
| ACATACCAGTGGAAATGAGG+AGG | + | chr1_4:39955888-39955907 | None:intergenic | 45.0% | |
| GGAGCTTCACCAAGTGTTTA+TGG | - | chr1_4:39956862-39956881 | Msa0162680:CDS | 45.0% | |
| TCCAACAGTTGCATGTTGCT+AGG | - | chr1_4:39956975-39956994 | Msa0162680:CDS | 45.0% | |
| TCCTAGCAACATGCAACTGT+TGG | + | chr1_4:39956979-39956998 | None:intergenic | 45.0% | |
| ! | GGTGGCTATGACTAGTTCAA+AGG | - | chr1_4:39957139-39957158 | Msa0162680:CDS | 45.0% |
| ATACCATGCCAGAGTTGTCA+AGG | + | chr1_4:39957198-39957217 | None:intergenic | 45.0% | |
| AGTTGACCATGACCATCATG+GGG | + | chr1_4:39957298-39957317 | None:intergenic | 45.0% | |
| GTAGTTGACCATGACCATCA+TGG | + | chr1_4:39957300-39957319 | None:intergenic | 45.0% | |
| !! | ATATTATAATATTATAATCT+TGG | - | chr1_4:39957118-39957137 | Msa0162680:CDS | 5.0% |
| !!! | ATAAATATTTTTTCATATAT+TGG | - | chr1_4:39957221-39957240 | Msa0162680:five_prime_UTR | 5.0% |
| TATTCTCCGGCTCTTTCTCC+CGG | - | chr1_4:39955347-39955366 | Msa0162680:three_prime_UTR | 50.0% | |
| GCGAAACTTGATCCGAGTTG+CGG | + | chr1_4:39955375-39955394 | None:intergenic | 50.0% | |
| CAACTCGGATCAAGTTTCGC+CGG | - | chr1_4:39955375-39955394 | Msa0162680:three_prime_UTR | 50.0% | |
| TCCTCTCATGGGAGACTCTA+AGG | + | chr1_4:39955531-39955550 | None:intergenic | 50.0% | |
| AAGGGTCTTGCTCCTCTCAT+GGG | + | chr1_4:39955542-39955561 | None:intergenic | 50.0% | |
| CTCCAAAATGGATGCTGACG+TGG | - | chr1_4:39955591-39955610 | Msa0162680:CDS | 50.0% | |
| ! | AGCCACGTCAGCATCCATTT+TGG | + | chr1_4:39955596-39955615 | None:intergenic | 50.0% |
| ! | ACTTGTTAAACTCCGGCTCG+AGG | - | chr1_4:39955636-39955655 | Msa0162680:CDS | 50.0% |
| ! | TCCTACTAGCCTCATTGGAC+CGG | + | chr1_4:39955669-39955688 | None:intergenic | 50.0% |
| CATCTGTGGTGAGTGGTTTG+AGG | - | chr1_4:39955734-39955753 | Msa0162680:CDS | 50.0% | |
| GTTGACCTCCTCATTTCCAC+TGG | - | chr1_4:39955880-39955899 | Msa0162680:intron | 50.0% | |
| TCATGCTGCCTTGACAACTC+TGG | - | chr1_4:39957187-39957206 | Msa0162680:CDS | 50.0% | |
| CTAGAACCCCATGATGGTCA+TGG | - | chr1_4:39957289-39957308 | Msa0162680:five_prime_UTR | 50.0% | |
| GGTCATGGTCAACTACCTTG+AGG | - | chr1_4:39957304-39957323 | Msa0162680:five_prime_UTR | 50.0% | |
| GGCATGTGAATTGGAGGAGA+AGG | - | chr1_4:39957357-39957376 | Msa0162680:five_prime_UTR | 50.0% | |
| TTTCTCCCGGTTCCGCAACT+CGG | - | chr1_4:39955360-39955379 | Msa0162680:three_prime_UTR | 55.0% | |
| TTGATCCGAGTTGCGGAACC+GGG | + | chr1_4:39955368-39955387 | None:intergenic | 55.0% | |
| CTTGATCCGAGTTGCGGAAC+CGG | + | chr1_4:39955369-39955388 | None:intergenic | 55.0% | |
| !! | ACACCGGTTTGTGCGGTGTT+CGG | + | chr1_4:39955433-39955452 | None:intergenic | 55.0% |
| GCCTTAGAGTCTCCCATGAG+AGG | - | chr1_4:39955527-39955546 | Msa0162680:CDS | 55.0% | |
| GAAGGGTCTTGCTCCTCTCA+TGG | + | chr1_4:39955543-39955562 | None:intergenic | 55.0% | |
| CACAGCTTTCGCGCTGTGAA+GGG | + | chr1_4:39955560-39955579 | None:intergenic | 55.0% | |
| TCACAGCTTTCGCGCTGTGA+AGG | + | chr1_4:39955561-39955580 | None:intergenic | 55.0% | |
| TCACAGCGCGAAAGCTGTGA+AGG | - | chr1_4:39955561-39955580 | Msa0162680:CDS | 55.0% | |
| ACCGGTCCAATGAGGCTAGT+AGG | - | chr1_4:39955665-39955684 | Msa0162680:CDS | 55.0% | |
| GAGGCTAGTAGGAGTTTGCC+TGG | - | chr1_4:39955676-39955695 | Msa0162680:CDS | 55.0% | |
| AGTAGGAGTTTGCCTGGTGC+TGG | - | chr1_4:39955682-39955701 | Msa0162680:CDS | 55.0% | |
| AGATGTTCTAGTCCGGTCCG+AGG | + | chr1_4:39955719-39955738 | None:intergenic | 55.0% | |
| ! | GGACCGGACTAGAACATCTG+TGG | - | chr1_4:39955720-39955739 | Msa0162680:CDS | 55.0% |
| ACGAATTAGCACGTGCCACG+TGG | + | chr1_4:39956940-39956959 | None:intergenic | 55.0% | |
| CTGCCTTGACAACTCTGGCA+TGG | - | chr1_4:39957192-39957211 | Msa0162680:exon | 55.0% | |
| TCGCCGAACACCGCACAAAC+CGG | - | chr1_4:39955427-39955446 | Msa0162680:three_prime_UTR | 60.0% | |
| GGCACTTGACCGGTCCAATG+AGG | - | chr1_4:39955657-39955676 | Msa0162680:CDS | 60.0% | |
| ! | GAGTTTGCCTGGTGCTGGAC+CGG | - | chr1_4:39955687-39955706 | Msa0162680:CDS | 60.0% |
| ! | AGTTTGCCTGGTGCTGGACC+GGG | - | chr1_4:39955688-39955707 | Msa0162680:CDS | 60.0% |
| GCGGAACCGGGAGAAAGAGC+CGG | + | chr1_4:39955356-39955375 | None:intergenic | 65.0% | |
| ! | TCCGGCTCGAGGCACTTGAC+CGG | - | chr1_4:39955647-39955666 | Msa0162680:CDS | 65.0% |
| ACCGGTCAAGTGCCTCGAGC+CGG | + | chr1_4:39955651-39955670 | None:intergenic | 65.0% | |
| TGCTGGACCGGGTTCGTCCT+CGG | - | chr1_4:39955699-39955718 | Msa0162680:CDS | 65.0% | |
| GACGAACCCGGTCCAGCACC+AGG | + | chr1_4:39955697-39955716 | None:intergenic | 70.0% | |
| GACCGGGTTCGTCCTCGGAC+CGG | - | chr1_4:39955704-39955723 | Msa0162680:CDS | 70.0% | |
| GTCCGGTCCGAGGACGAACC+CGG | + | chr1_4:39955709-39955728 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39955004 | 39957542 | 39955004 | ID=Msa0162680;Name=Msa0162680 |
| chr1_4 | mRNA | 39955004 | 39957542 | 39955004 | ID=Msa0162680-mRNA-1;Parent=Msa0162680;Name=Msa0162680-mRNA-1;_AED=0.27;_eAED=0.27;_QI=333|1|1|1|1|1|2|446|306 |
| chr1_4 | exon | 39955004 | 39955805 | 39955004 | ID=Msa0162680-mRNA-1:exon:11586;Parent=Msa0162680-mRNA-1 |
| chr1_4 | exon | 39956645 | 39957542 | 39956645 | ID=Msa0162680-mRNA-1:exon:11585;Parent=Msa0162680-mRNA-1 |
| chr1_4 | five_prime_UTR | 39957210 | 39957542 | 39957210 | ID=Msa0162680-mRNA-1:five_prime_utr;Parent=Msa0162680-mRNA-1 |
| chr1_4 | CDS | 39956645 | 39957209 | 39956645 | ID=Msa0162680-mRNA-1:cds;Parent=Msa0162680-mRNA-1 |
| chr1_4 | CDS | 39955450 | 39955805 | 39955450 | ID=Msa0162680-mRNA-1:cds;Parent=Msa0162680-mRNA-1 |
| chr1_4 | three_prime_UTR | 39955004 | 39955449 | 39955004 | ID=Msa0162680-mRNA-1:three_prime_utr;Parent=Msa0162680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
