AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1361710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361710 MtrunA17_Chr7g0273051 91.512 377 15 6 1 376 1 361 0.0 667
Msa1361710 MtrunA17_Chr1g0191601 67.761 335 93 9 27 355 30 355 3.27e-152 434
Msa1361710 MtrunA17_Chr3g0132491 40.367 327 172 8 44 359 54 368 6.14e-68 219
Msa1361710 MtrunA17_Chr5g0426881 39.091 330 186 10 36 358 51 372 1.49e-60 200
Msa1361710 MtrunA17_Chr5g0426871 35.417 384 207 10 9 363 20 391 1.72e-58 194
Msa1361710 MtrunA17_Chr6g0470751 34.276 283 139 8 14 278 20 273 1.96e-43 153
Msa1361710 MtrunA17_Chr3g0123631 37.156 218 104 6 51 267 3 188 3.60e-38 135
Msa1361710 MtrunA17_Chr3g0123641 37.445 227 112 7 51 270 3 206 5.04e-37 134
Msa1361710 MtrunA17_Chr5g0433861 36.017 236 131 8 49 273 34 260 4.05e-31 120
Msa1361710 MtrunA17_Chr8g0366521 33.333 234 139 8 49 273 34 259 4.14e-28 112
Msa1361710 MtrunA17_Chr2g0307411 45.161 124 58 3 49 172 34 147 4.47e-28 108
Msa1361710 MtrunA17_Chr6g0486651 34.356 163 88 4 13 167 10 161 2.32e-25 105
Msa1361710 MtrunA17_Chr1g0203541 52.564 78 35 1 95 170 104 181 7.38e-24 97.8
Msa1361710 MtrunA17_Chr5g0427431 40.299 134 68 4 45 172 80 207 1.20e-23 101
Msa1361710 MtrunA17_Chr4g0059281 36.000 150 76 3 37 170 32 177 1.48e-23 99.4
Msa1361710 MtrunA17_Chr4g0067591 50.000 86 38 1 92 177 76 156 8.68e-23 96.7
Msa1361710 MtrunA17_Chr3g0133001 34.752 141 77 2 45 173 67 204 7.45e-22 96.3
Msa1361710 MtrunA17_Chr4g0073141 55.128 78 29 2 96 171 117 190 7.88e-22 97.1
Msa1361710 MtrunA17_Chr2g0295571 36.216 185 97 6 32 201 20 198 1.13e-21 94.0
Msa1361710 MtrunA17_Chr3g0105441 41.463 123 58 2 94 202 100 222 2.86e-21 92.0
Msa1361710 MtrunA17_Chr5g0413841 31.088 193 81 6 26 173 5 190 4.45e-21 93.6
Msa1361710 MtrunA17_Chr2g0325161 43.902 82 43 1 96 174 91 172 6.67e-21 90.5
Msa1361710 MtrunA17_Chr3g0128771 32.484 157 99 4 21 174 16 168 1.19e-20 88.2
Msa1361710 MtrunA17_Chr8g0336881 31.847 157 101 2 43 193 17 173 2.43e-20 90.5
Msa1361710 MtrunA17_Chr7g0276591 39.344 122 66 2 49 170 33 146 2.82e-20 90.1
Msa1361710 MtrunA17_Chr5g0411081 29.952 207 105 5 45 214 55 258 6.06e-20 90.1
Msa1361710 MtrunA17_Chr8g0366561 32.867 143 87 3 45 179 55 196 7.97e-20 89.7
Msa1361710 MtrunA17_Chr8g0383941 33.987 153 92 5 21 171 35 180 1.56e-19 86.3
Msa1361710 MtrunA17_Chr1g0167811 30.000 160 85 3 25 167 16 165 3.83e-19 87.4
Msa1361710 MtrunA17_Chr5g0426781 37.097 124 71 3 96 218 128 245 3.86e-19 87.8
Msa1361710 MtrunA17_Chr7g0274741 34.416 154 85 3 55 196 17 166 4.34e-19 84.0
Msa1361710 MtrunA17_Chr6g0451161 32.168 143 77 3 44 170 66 204 4.68e-19 87.8
Msa1361710 MtrunA17_Chr2g0325141 32.394 142 81 3 55 181 6 147 5.40e-19 82.8
Msa1361710 MtrunA17_Chr8g0364881 35.503 169 79 6 51 202 7 162 6.13e-19 87.0
Msa1361710 MtrunA17_Chr4g0027761 45.455 77 36 1 95 171 99 169 8.74e-19 83.6
Msa1361710 MtrunA17_Chr8g0383861 31.250 192 110 7 25 199 36 222 2.73e-18 83.2
Msa1361710 MtrunA17_Chr2g0279431 49.398 83 33 2 96 175 135 211 3.46e-18 85.1
Msa1361710 MtrunA17_Chr1g0184171 31.159 138 79 4 47 170 40 175 3.61e-18 84.7
Msa1361710 MtrunA17_Chr1g0177041 39.241 79 48 0 96 174 74 152 5.11e-18 80.9
Msa1361710 MtrunA17_Chr3g0126931 45.570 79 40 2 93 171 98 173 9.32e-18 83.6
Msa1361710 MtrunA17_Chr8g0345361 32.576 132 73 4 49 171 38 162 1.06e-17 82.0
Msa1361710 MtrunA17_Chr8g0381731 45.679 81 41 1 96 176 148 225 1.18e-17 82.4
Msa1361710 MtrunA17_Chr1g0186661 35.484 124 66 3 61 170 53 176 1.18e-17 83.2
Msa1361710 MtrunA17_Chr8g0383881 31.868 182 105 7 32 199 36 212 1.20e-17 80.9
Msa1361710 MtrunA17_Chr1g0197031 29.333 150 97 4 30 172 2 149 1.20e-17 79.7
Msa1361710 MtrunA17_Chr8g0383921 32.192 146 90 5 31 171 43 184 1.63e-17 80.5
Msa1361710 MtrunA17_Chr5g0409211 35.404 161 73 7 46 191 8 152 3.04e-17 79.0
Msa1361710 MtrunA17_Chr3g0129671 32.026 153 88 6 45 189 55 199 3.39e-17 80.1
Msa1361710 MtrunA17_Chr1g0197021 43.421 76 42 1 104 178 77 152 3.79e-17 78.2
Msa1361710 MtrunA17_Chr8g0383871 30.137 146 93 4 32 171 43 185 4.57e-17 79.7
Msa1361710 MtrunA17_Chr5g0409201 34.266 143 80 4 45 179 11 147 4.75e-17 77.8
Msa1361710 MtrunA17_Chr4g0013561 37.500 104 56 2 96 194 85 184 7.37e-17 79.0
Msa1361710 MtrunA17_Chr4g0030831 29.452 146 74 5 52 171 16 158 1.04e-16 77.4
Msa1361710 MtrunA17_Chr3g0113811 29.688 128 88 2 49 175 30 156 1.30e-16 77.0
Msa1361710 MtrunA17_Chr4g0050041 30.357 168 92 4 29 174 37 201 1.34e-16 80.5
Msa1361710 MtrunA17_Chr7g0246761 39.175 97 56 2 96 192 63 156 1.59e-16 77.0
Msa1361710 MtrunA17_Chr8g0383901 34.507 142 84 5 32 171 43 177 1.73e-16 77.8
Msa1361710 MtrunA17_Chr5g0444161 40.476 84 48 2 94 177 155 236 1.95e-16 78.2
Msa1361710 MtrunA17_Chr8g0348151 41.176 85 45 2 90 174 84 163 1.96e-16 77.4
Msa1361710 MtrunA17_Chr5g0437361 35.398 113 64 3 59 170 44 148 3.11e-16 75.9
Msa1361710 MtrunA17_Chr8g0370171 29.508 183 92 8 39 211 16 171 3.67e-16 76.6
Msa1361710 MtrunA17_Chr5g0407431 32.258 124 70 4 49 167 33 147 7.05e-16 75.9
Msa1361710 MtrunA17_Chr3g0144241 32.374 139 83 4 49 182 29 161 8.66e-16 75.1
Msa1361710 MtrunA17_Chr1g0198201 36.607 112 61 2 94 197 59 168 9.11e-16 75.9
Msa1361710 MtrunA17_Chr7g0269491 35.036 137 80 5 97 231 67 196 1.07e-15 75.1
Msa1361710 MtrunA17_Chr2g0301871 45.070 71 39 0 106 176 64 134 1.11e-15 77.0
Msa1361710 MtrunA17_Chr3g0143301 36.567 134 63 6 51 177 5 123 1.58e-15 72.8
Msa1361710 MtrunA17_Chr7g0248831 37.975 79 48 1 96 174 80 157 1.84e-15 73.9
Msa1361710 MtrunA17_Chr7g0244851 34.000 150 82 7 43 183 28 169 2.15e-15 73.6
Msa1361710 MtrunA17_Chr6g0451051 29.600 125 79 4 54 178 4 119 2.61e-15 72.8
Msa1361710 MtrunA17_Chr7g0274711 44.737 76 42 0 95 170 66 141 2.75e-15 73.6
Msa1361710 MtrunA17_Chr5g0444141 39.744 78 46 1 94 171 190 266 2.88e-15 75.1
Msa1361710 MtrunA17_Chr1g0184631 44.737 76 42 0 95 170 67 142 4.23e-15 72.8
Msa1361710 MtrunA17_Chr5g0430781 43.038 79 39 2 95 173 86 158 4.90e-15 73.6
Msa1361710 MtrunA17_Chr8g0369571 31.081 148 96 4 38 183 4 147 5.84e-15 72.4
Msa1361710 MtrunA17_Chr8g0350741 39.726 73 42 1 98 170 64 134 9.22e-15 72.0
Msa1361710 MtrunA17_Chr4g0065171 34.409 93 52 3 100 191 459 543 1.08e-14 75.5
Msa1361710 MtrunA17_Chr7g0261091 26.282 156 101 4 49 190 13 168 1.17e-14 74.3
Msa1361710 MtrunA17_Chr3g0081611 28.667 150 96 4 45 185 21 168 1.23e-14 71.6
Msa1361710 MtrunA17_Chr2g0327791 40.278 72 42 1 97 168 108 178 2.29e-14 71.6
Msa1361710 MtrunA17_Chr7g0237871 40.000 105 54 4 102 204 136 233 2.33e-14 72.0
Msa1361710 MtrunA17_Chr3g0118061 42.857 77 43 1 94 170 74 149 2.42e-14 71.6
Msa1361710 MtrunA17_Chr5g0408871 38.889 72 40 3 101 171 483 551 2.59e-14 74.3
Msa1361710 MtrunA17_Chr8g0347101 43.902 82 45 1 93 174 283 363 2.86e-14 73.6
Msa1361710 MtrunA17_Chr7g0275601 33.824 136 74 5 51 178 32 159 3.12e-14 70.1
Msa1361710 MtrunA17_Chr8g0369691 40.278 72 39 3 101 171 423 491 3.95e-14 73.6
Msa1361710 MtrunA17_Chr7g0248841 32.530 83 55 1 91 172 69 151 4.17e-14 69.7
Msa1361710 MtrunA17_Chr6g0451031 31.538 130 78 5 49 178 4 122 4.34e-14 68.6
Msa1361710 MtrunA17_Chr2g0297011 31.757 148 90 5 36 181 18 156 5.91e-14 69.3
Msa1361710 MtrunA17_Chr8g0388231 37.500 104 52 3 68 167 285 379 6.30e-14 72.8
Msa1361710 MtrunA17_Chr3g0118071 44.872 78 40 2 94 170 74 149 6.78e-14 70.5
Msa1361710 MtrunA17_Chr1g0157091 30.469 128 70 3 45 172 10 118 1.28e-13 67.4
Msa1361710 MtrunA17_Chr3g0120011 47.541 61 32 0 125 185 119 179 3.03e-13 68.6
Msa1361710 MtrunA17_Chr5g0396611 46.575 73 36 2 96 167 312 382 3.05e-13 70.5
Msa1361710 MtrunA17_Chr2g0300331 31.469 143 86 3 52 184 93 233 3.25e-13 68.9
Msa1361710 MtrunA17_Chr8g0383931 44.118 68 34 2 105 171 123 187 3.96e-13 68.6
Msa1361710 MtrunA17_Chr5g0406031 38.961 77 46 1 94 170 159 234 5.46e-13 68.2
Msa1361710 MtrunA17_Chr5g0396601 45.205 73 37 2 96 167 322 392 1.11e-12 68.9
Msa1361710 MtrunA17_Chr7g0274731 54.545 44 20 0 125 168 114 157 1.26e-12 66.2
Msa1361710 MtrunA17_Chr7g0274721 41.892 74 39 1 95 168 67 136 1.29e-12 65.5
Msa1361710 MtrunA17_Chr5g0396591 43.836 73 38 2 96 167 212 282 1.38e-12 67.8
Msa1361710 MtrunA17_Chr3g0118091 29.752 121 69 3 49 169 7 111 2.29e-12 63.9
Msa1361710 MtrunA17_Chr3g0126611 39.189 74 44 1 96 169 303 375 3.10e-12 67.4
Msa1361710 MtrunA17_Chr8g0388201 40.000 75 42 2 94 167 317 389 3.81e-12 67.4
Msa1361710 MtrunA17_Chr8g0347461 37.662 77 44 2 102 176 117 191 4.27e-12 66.2
Msa1361710 MtrunA17_Chr1g0197011 28.378 148 93 4 30 167 5 149 4.86e-12 63.5
Msa1361710 MtrunA17_Chr8g0343571 46.809 47 25 0 124 170 84 130 5.56e-12 63.5
Msa1361710 MtrunA17_Chr3g0104301 39.241 79 45 3 105 181 37 114 7.93e-12 62.4
Msa1361710 MtrunA17_Chr3g0104321 39.241 79 45 3 105 181 37 114 7.93e-12 62.4
Msa1361710 MtrunA17_Chr3g0124531 37.662 77 42 3 124 199 68 139 9.13e-12 62.8
Msa1361710 MtrunA17_Chr3g0118111 28.846 156 101 4 19 171 11 159 1.07e-11 63.2
Msa1361710 MtrunA17_Chr4g0052671 53.488 43 20 0 125 167 106 148 1.43e-11 62.0
Msa1361710 MtrunA17_Chr8g0371291 41.667 72 35 2 96 167 158 222 1.50e-11 63.5
Msa1361710 MtrunA17_Chr4g0060981 47.826 46 24 0 125 170 174 219 1.95e-11 63.2
Msa1361710 MtrunA17_Chr6g0451041 40.741 54 32 0 125 178 18 71 2.25e-11 60.1
Msa1361710 MtrunA17_Chr2g0317671 37.313 67 40 1 106 170 138 204 3.81e-11 62.0
Msa1361710 MtrunA17_Chr4g0073131 37.500 80 50 0 125 204 102 181 6.71e-11 60.8
Msa1361710 MtrunA17_Chr4g0069761 40.000 75 35 3 105 171 2 74 7.26e-11 58.5
Msa1361710 MtrunA17_Chr3g0104311 37.179 78 46 3 105 180 37 113 8.10e-11 59.7
Msa1361710 MtrunA17_Chr4g0010171 28.346 127 73 2 49 170 45 158 8.34e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361710 AT3G05200.1 46.269 335 133 11 17 338 16 316 6.41e-86 266
Msa1361710 AT5G27420.1 44.101 356 119 11 41 358 37 350 2.74e-82 256
Msa1361710 AT1G72200.1 39.385 325 173 9 27 344 43 350 2.83e-66 216
Msa1361710 AT1G22500.1 40.498 321 162 9 45 353 35 338 2.20e-63 207
Msa1361710 AT4G40070.1 34.877 324 172 5 8 326 9 298 1.24e-56 188
Msa1361710 AT4G09130.1 47.964 221 100 6 93 310 88 296 5.53e-55 185
Msa1361710 AT2G35000.1 42.623 244 123 4 46 278 48 285 1.76e-53 181
Msa1361710 AT4G09120.1 41.353 266 117 9 95 355 93 324 5.79e-53 179
Msa1361710 AT1G35330.1 38.110 328 160 8 1 310 4 306 2.19e-52 177
Msa1361710 AT2G34990.1 37.652 247 109 6 51 282 16 232 4.98e-46 160
Msa1361710 AT2G34990.2 37.652 247 109 6 51 282 38 254 7.56e-46 160
Msa1361710 AT5G46650.1 31.164 292 162 8 33 304 8 280 1.22e-36 134
Msa1361710 AT4G17920.1 29.693 293 156 8 46 313 20 287 3.67e-35 130
Msa1361710 AT4G09110.1 35.377 212 116 6 47 249 47 246 4.41e-31 120
Msa1361710 AT5G05810.1 37.500 152 71 3 40 173 49 194 1.39e-26 110
Msa1361710 AT2G27940.1 35.542 166 85 4 45 192 46 207 3.30e-26 105
Msa1361710 AT4G09100.1 55.128 78 35 0 95 172 55 132 2.41e-24 97.4
Msa1361710 AT3G16720.1 33.668 199 96 9 30 202 2 190 9.90e-24 100
Msa1361710 AT2G20030.1 33.149 181 105 5 45 214 37 212 2.49e-23 100
Msa1361710 AT4G28890.1 35.484 155 82 5 38 178 26 176 4.45e-22 97.4
Msa1361710 AT2G18650.1 52.632 76 34 1 96 171 99 172 2.29e-21 95.5
Msa1361710 AT4G10150.1 35.075 134 74 3 49 175 34 161 4.54e-21 91.3
Msa1361710 AT5G40250.1 30.682 176 98 5 46 199 42 215 1.64e-20 92.4
Msa1361710 AT1G23980.1 34.694 147 75 4 42 170 46 189 1.75e-20 92.0
Msa1361710 AT4G10160.1 34.266 143 85 3 36 175 11 147 2.08e-20 89.4
Msa1361710 AT5G17600.1 33.508 191 100 7 52 222 61 244 3.59e-20 91.3
Msa1361710 AT2G35420.1 36.196 163 72 5 96 257 77 208 7.24e-20 88.6
Msa1361710 AT4G17905.1 29.375 160 86 5 32 171 49 201 1.60e-19 88.6
Msa1361710 AT1G32361.1 36.970 165 86 6 96 256 130 280 2.32e-19 88.6
Msa1361710 AT1G72220.1 37.143 140 64 5 50 171 90 223 2.41e-19 89.4
Msa1361710 AT4G17905.2 29.375 160 86 5 32 171 75 227 2.75e-19 88.2
Msa1361710 AT4G33565.1 54.545 77 30 2 96 171 191 263 3.10e-19 88.6
Msa1361710 AT4G15975.1 45.455 77 38 1 96 172 51 123 6.10e-19 85.5
Msa1361710 AT4G30400.1 51.389 72 33 1 96 167 107 176 6.24e-19 88.6
Msa1361710 AT3G62690.1 52.439 82 34 3 97 178 88 164 7.93e-19 85.5
Msa1361710 AT1G76410.1 33.108 148 87 4 28 171 11 150 8.51e-19 84.0
Msa1361710 AT5G43420.1 30.201 149 79 2 47 170 35 183 9.37e-19 87.4
Msa1361710 AT3G18773.1 35.156 128 70 4 54 171 52 176 1.21e-18 84.3
Msa1361710 AT3G48030.2 40.952 105 54 2 96 200 102 198 1.21e-18 85.5
Msa1361710 AT3G48030.1 40.952 105 54 2 96 200 180 276 1.32e-18 86.7
Msa1361710 AT5G01880.1 43.137 102 46 4 72 171 60 151 1.75e-18 82.0
Msa1361710 AT3G10910.1 34.337 166 94 4 15 171 1 160 1.85e-18 82.8
Msa1361710 AT2G46493.1 38.710 124 71 3 48 167 58 180 2.21e-18 82.8
Msa1361710 AT3G14320.1 35.294 119 66 3 56 167 16 130 2.89e-18 82.8
Msa1361710 AT3G18930.2 46.988 83 37 2 96 171 120 202 3.56e-18 85.9
Msa1361710 AT3G18930.3 46.988 83 37 2 96 171 120 202 3.56e-18 85.9
Msa1361710 AT3G18930.1 46.988 83 37 2 96 171 120 202 3.56e-18 85.9
Msa1361710 AT1G04360.1 31.915 141 76 3 47 170 42 179 7.28e-18 84.7
Msa1361710 AT1G49210.1 36.220 127 69 5 54 171 58 181 1.20e-17 81.6
Msa1361710 AT2G25410.1 46.914 81 42 1 93 172 294 374 1.47e-17 83.6
Msa1361710 AT5G05280.1 30.435 161 88 6 21 171 13 159 1.61e-17 80.1
Msa1361710 AT3G03550.1 45.570 79 40 1 97 175 134 209 1.70e-17 83.2
Msa1361710 AT1G49200.1 33.858 127 72 5 54 171 59 182 2.06e-17 80.9
Msa1361710 AT5G07040.1 29.496 139 95 2 36 173 6 142 2.41e-17 79.0
Msa1361710 AT1G53820.1 36.134 119 62 3 96 214 95 199 3.88e-17 81.6
Msa1361710 AT5G57750.1 48.000 75 33 2 97 169 96 166 5.85e-17 79.3
Msa1361710 AT5G10380.1 41.667 108 44 5 96 197 109 203 7.28e-17 80.9
Msa1361710 AT5G53110.1 39.496 119 61 4 58 167 256 372 1.02e-16 81.3
Msa1361710 AT1G28040.1 46.053 76 40 1 92 167 221 295 1.11e-16 80.1
Msa1361710 AT2G42360.1 31.967 122 77 2 53 174 42 157 1.14e-16 79.0
Msa1361710 AT5G06490.1 40.476 84 46 2 96 175 96 179 1.37e-16 77.8
Msa1361710 AT1G49220.1 33.858 127 72 5 54 171 58 181 1.40e-16 79.0
Msa1361710 AT2G46495.2 44.578 83 44 1 93 175 260 340 1.81e-16 80.1
Msa1361710 AT5G42200.1 34.194 155 89 5 18 172 10 151 2.33e-16 76.3
Msa1361710 AT2G46495.1 44.578 83 44 1 93 175 288 368 2.64e-16 80.1
Msa1361710 AT1G20823.1 29.193 161 79 5 31 171 12 157 2.84e-16 77.0
Msa1361710 AT3G60220.1 44.156 77 43 0 100 176 92 168 4.49e-16 79.0
Msa1361710 AT2G46494.1 36.585 123 69 4 51 167 239 358 7.40e-16 78.6
Msa1361710 AT2G35910.1 41.772 79 43 1 96 174 121 196 1.74e-15 75.1
Msa1361710 AT1G72310.1 35.593 118 65 4 96 206 102 215 2.54e-15 76.6
Msa1361710 AT4G35480.1 41.975 81 46 1 119 199 107 186 2.94e-15 74.3
Msa1361710 AT2G47560.1 47.436 78 40 1 95 172 79 155 4.27e-15 74.3
Msa1361710 AT1G49230.1 35.606 132 74 6 45 171 52 177 5.18e-15 73.9
Msa1361710 AT2G42350.1 42.500 80 38 2 95 172 74 147 6.63e-15 73.6
Msa1361710 AT1G33480.1 32.484 157 96 4 49 202 28 177 7.63e-15 74.3
Msa1361710 AT5G66070.5 39.241 79 43 1 92 170 148 221 1.37e-14 72.8
Msa1361710 AT5G66070.1 39.241 79 43 1 92 170 148 221 1.37e-14 72.8
Msa1361710 AT3G61550.1 33.028 109 63 2 92 191 95 202 1.52e-14 72.4
Msa1361710 AT5G66070.2 39.241 79 43 1 92 170 172 245 2.13e-14 72.8
Msa1361710 AT3G19140.1 33.929 112 66 3 62 170 18 124 6.41e-14 68.9
Msa1361710 AT2G17450.1 52.830 53 25 0 124 176 101 153 9.95e-14 69.7
Msa1361710 AT2G46160.1 34.021 97 59 1 93 184 101 197 2.15e-13 69.3
Msa1361710 AT2G46160.2 34.021 97 59 1 93 184 101 197 2.15e-13 69.3
Msa1361710 AT5G47610.1 41.892 74 41 2 104 177 88 159 3.16e-13 67.8
Msa1361710 AT2G34000.1 32.353 136 84 4 34 167 4 133 3.35e-13 67.0
Msa1361710 AT5G58580.1 42.683 82 45 1 95 176 110 189 3.61e-13 70.1
Msa1361710 AT1G74410.1 37.838 74 43 1 94 167 148 218 8.86e-13 67.8
Msa1361710 AT5G66160.1 38.554 83 46 3 89 170 199 277 1.09e-12 68.6
Msa1361710 AT4G17245.1 47.143 70 34 3 106 174 85 152 1.41e-12 65.9
Msa1361710 AT5G66160.2 38.554 83 46 3 89 170 199 277 1.86e-12 67.8
Msa1361710 AT4G35840.1 38.095 84 38 2 94 170 160 236 4.04e-12 65.9
Msa1361710 AT4G24015.1 36.792 106 58 3 71 170 48 150 4.26e-12 64.7
Msa1361710 AT3G60966.1 50.943 53 26 0 125 177 62 114 7.78e-12 62.8
Msa1361710 AT2G37580.1 41.772 79 38 3 100 170 109 187 1.34e-11 64.3
Msa1361710 AT1G53010.1 42.697 89 39 3 90 170 91 175 1.43e-11 63.2
Msa1361710 AT4G30370.1 37.500 72 42 1 96 167 89 157 2.07e-11 62.8
Msa1361710 AT2G17730.1 35.065 77 50 0 94 170 165 241 2.25e-11 63.9
Msa1361710 AT5G41400.1 36.620 71 43 1 103 171 83 153 3.13e-11 62.0
Msa1361710 AT3G11110.1 31.250 80 53 1 91 170 75 152 3.65e-11 61.6
Msa1361710 AT5G36001.1 53.488 43 20 0 125 167 264 306 4.45e-11 63.9
Msa1361710 AT3G19950.1 40.845 71 38 2 100 170 194 260 4.78e-11 63.9
Msa1361710 AT3G19950.2 40.845 71 38 2 100 170 252 318 5.81e-11 63.9
Msa1361710 AT3G19950.3 40.845 71 38 2 100 170 252 318 5.81e-11 63.9
Msa1361710 AT3G20395.1 47.826 46 24 0 125 170 171 216 6.08e-11 62.4

Find 94 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTCTTGGTTGAAATT+TGG 0.164284 tig0017595:-284 Msa1361710:intergenic
GATGAATAAGTGGGAATTAT+TGG 0.168933 tig0017595:-186 Msa1361710:intergenic
TATCTGTTTCCTAACCTTAT+TGG 0.173359 tig0017595:-978 Msa1361710:intergenic
CGAAGGAAGGGTTAAATTCT+TGG 0.234566 tig0017595:-295 Msa1361710:intergenic
ATCTGTTTCCTAACCTTATT+GGG 0.269186 tig0017595:-977 Msa1361710:intergenic
TAGCAAGGGCGTTGTCGTTT+AGG 0.282656 tig0017595:+1173 Msa1361710:CDS
TTATTCAACGAAATCACTTC+TGG 0.283046 tig0017595:-827 Msa1361710:intergenic
TCATCGCTATTATTGACTTT+TGG 0.285779 tig0017595:-1205 Msa1361710:intergenic
GGAGTGTGCCGTTTGTTTAA+TGG 0.297078 tig0017595:+538 Msa1361710:CDS
CACTTTGAAACTGCCCAATA+AGG 0.298379 tig0017595:+964 Msa1361710:CDS
GTAATTGAACGGCGTCGTTT+TGG 0.304277 tig0017595:-760 Msa1361710:intergenic
TATTGTTATTAGCTTGGGCT+TGG 0.311459 tig0017595:-244 Msa1361710:intergenic
CATTGTTATTGTTATTAGCT+TGG 0.317190 tig0017595:-250 Msa1361710:intergenic
TACTCGCCCGTTGCAATTGC+CGG 0.330998 tig0017595:-1006 Msa1361710:intergenic
ATTGTTATTGTTATTAGCTT+GGG 0.333202 tig0017595:-249 Msa1361710:intergenic
GAGATCCACGCGTACGGTTC+CGG 0.358846 tig0017595:-859 Msa1361710:intergenic
CGCTCTACGGCCGTTGGTGA+TGG 0.365663 tig0017595:-423 Msa1361710:intergenic
TAAGATCGGAAAAGAAGTTC+TGG 0.380553 tig0017595:+517 Msa1361710:CDS
ATTGTTATTAGCTTGGGCTT+GGG 0.383606 tig0017595:-243 Msa1361710:intergenic
CGGACATTCTTTAATTCAAC+CGG 0.385304 tig0017595:+922 Msa1361710:CDS
GGAGCAGCGACGGATGTAGA+TGG 0.397219 tig0017595:-369 Msa1361710:intergenic
ACTTCGGAGTATTCAAGAAT+CGG 0.428043 tig0017595:-485 Msa1361710:intergenic
TGAAACTGCCCAATAAGGTT+AGG 0.437818 tig0017595:+969 Msa1361710:CDS
GCTCTACGGCCGTTGGTGAT+GGG 0.441547 tig0017595:-422 Msa1361710:intergenic
CGTTGAATAAAACACTGAAC+CGG 0.443290 tig0017595:+840 Msa1361710:CDS
TTCGAATTCCATTAAACAAA+CGG 0.446234 tig0017595:-546 Msa1361710:intergenic
AACGAGATTCGCGCGACAAA+CGG 0.452643 tig0017595:-660 Msa1361710:intergenic
TGGTTGAAATTTGGATTCGT+GGG 0.453468 tig0017595:-275 Msa1361710:intergenic
TTGGTTGAAATTTGGATTCG+TGG 0.453614 tig0017595:-276 Msa1361710:intergenic
ACAGAAGATGATGGCATGAT+AGG 0.457550 tig0017595:-1253 Msa1361710:intergenic
ACGAGATTCGCGCGACAAAC+GGG 0.459832 tig0017595:-659 Msa1361710:intergenic
TGTCTTGAGCTACTTTCTCT+TGG 0.462620 tig0017595:-1043 Msa1361710:intergenic
AATGAACCGGCAATTGCAAC+GGG 0.470044 tig0017595:+1000 Msa1361710:CDS
TCTATTACTTCCTTCACCTC+CGG 0.473105 tig0017595:-1077 Msa1361710:intergenic
CTTCGGAGTATTCAAGAATC+GGG 0.473393 tig0017595:-484 Msa1361710:intergenic
CAACCCGCTGACTCAGTTCA+CGG 0.475745 tig0017595:+686 Msa1361710:CDS
TCAAGACATGGTTATCGAAC+CGG 0.477421 tig0017595:+1058 Msa1361710:CDS
TGGGCAGTTTCAAAGTGAAC+CGG 0.477674 tig0017595:-958 Msa1361710:intergenic
GCCGTAGAGCGGTGGCGCGT+GGG 0.481374 tig0017595:+435 Msa1361710:CDS
AATAAGTGGGAATTATTGGT+TGG 0.488564 tig0017595:-182 Msa1361710:intergenic
CGCGTGGATCTCAATCGAAC+CGG 0.489399 tig0017595:+870 Msa1361710:CDS
GCCCACGCGCCACCGCTCTA+CGG 0.505822 tig0017595:-436 Msa1361710:intergenic
TTCCGAGGAGGATGAATAAG+TGG 0.507688 tig0017595:-196 Msa1361710:intergenic
GTTGGAGGAACTAGGTGAAT+CGG 0.510272 tig0017595:-390 Msa1361710:intergenic
GATCTTATGGATCTTGACTT+CGG 0.515679 tig0017595:-501 Msa1361710:intergenic
GTCAATAATAGCGATGATGA+AGG 0.517544 tig0017595:+1211 Msa1361710:CDS
GGGAAAGTTTCGATTACTGA+TGG 0.520563 tig0017595:-464 Msa1361710:intergenic
TGAACTGAGTCAGCGGGTTG+AGG 0.525086 tig0017595:-683 Msa1361710:intergenic
CTCTACGGCCGTTGGTGATG+GGG 0.532228 tig0017595:-421 Msa1361710:intergenic
AATGACTATGATTATAGCGA+AGG 0.536075 tig0017595:-312 Msa1361710:intergenic
TTGTTCCGTCGGTAATTGAA+CGG 0.537600 tig0017595:-771 Msa1361710:intergenic
TCCCACTTATTCATCCTCCT+CGG 0.538519 tig0017595:+194 Msa1361710:CDS
ACCACTCGTCAATACACTCT+GGG 0.542882 tig0017595:-616 Msa1361710:intergenic
GGTTATCGAACCGGAGGTGA+AGG 0.543512 tig0017595:+1067 Msa1361710:CDS
TTAGGAAACAGATAATGAAC+CGG 0.544604 tig0017595:+987 Msa1361710:CDS
CGGTTGAATTAAAGAATGTC+CGG 0.548764 tig0017595:-921 Msa1361710:intergenic
GGTGATGGGGAGAACGAGGT+TGG 0.553075 tig0017595:-408 Msa1361710:intergenic
AACCACTCGTCAATACACTC+TGG 0.553219 tig0017595:-617 Msa1361710:intergenic
GATGGGGAGAACGAGGTTGG+AGG 0.560879 tig0017595:-405 Msa1361710:intergenic
GGAGGTGAAGGAAGTAATAG+AGG 0.564258 tig0017595:+1079 Msa1361710:CDS
AGAACGAGGTTGGAGGAACT+AGG 0.565727 tig0017595:-398 Msa1361710:intergenic
ACTATGATTATAGCGAAGGA+AGG 0.567934 tig0017595:-308 Msa1361710:intergenic
CCAAGCAAAGGTCAAATCTG+AGG 0.569006 tig0017595:-1289 Msa1361710:intergenic
CTCGTTCTCCCCATCACCAA+CGG 0.571378 tig0017595:+413 Msa1361710:CDS
AATTCAACCGGGTGAAAACA+CGG 0.572541 tig0017595:+934 Msa1361710:CDS
TAATGAACCGGCAATTGCAA+CGG 0.573949 tig0017595:+999 Msa1361710:CDS
TCGATTGAGATCCACGCGTA+CGG 0.579352 tig0017595:-865 Msa1361710:intergenic
TTTCCACGGTCTCACTCGAC+CGG 0.579792 tig0017595:+902 Msa1361710:CDS
CACCAACGGCCGTAGAGCGG+TGG 0.586260 tig0017595:+427 Msa1361710:CDS
GCAGAGTCAACAGAAGATGA+TGG 0.589575 tig0017595:-1262 Msa1361710:intergenic
CAAGCAAAGGTCAAATCTGA+GGG 0.590548 tig0017595:-1288 Msa1361710:intergenic
AACCGGGTGAAAACACGGAC+CGG 0.596362 tig0017595:+939 Msa1361710:CDS
GAAGTCAAGATCCATAAGAT+CGG 0.599896 tig0017595:+503 Msa1361710:CDS
GTGCTCTATTAAATATCCAC+CGG 0.601417 tig0017595:-1141 Msa1361710:intergenic
CGTTGGTGATGGGGAGAACG+AGG 0.601625 tig0017595:-412 Msa1361710:intergenic
ACCGGTCTGATTTAAAACTC+AGG 0.606280 tig0017595:-1123 Msa1361710:intergenic
TAGGTGAATCGGAGCAGCGA+CGG 0.606334 tig0017595:-379 Msa1361710:intergenic
ACCCAGAGTGTATTGACGAG+TGG 0.607719 tig0017595:+615 Msa1361710:CDS
TGTGACTCAGTGTTTGACTC+AGG 0.609650 tig0017595:-713 Msa1361710:intergenic
ACACCGTGAACTGAGTCAGC+GGG 0.617952 tig0017595:-689 Msa1361710:intergenic
TTGAGAGAAGAAGGATTCCG+AGG 0.630359 tig0017595:-211 Msa1361710:intergenic
GGACATTCTTTAATTCAACC+GGG 0.631591 tig0017595:+923 Msa1361710:CDS
TGTCCGGTCGAGTGAGACCG+TGG 0.631922 tig0017595:-905 Msa1361710:intergenic
CATCACCAACGGCCGTAGAG+CGG 0.635889 tig0017595:+424 Msa1361710:CDS
GGTTGAAATTTGGATTCGTG+GGG 0.637910 tig0017595:-274 Msa1361710:intergenic
CTATGATTATAGCGAAGGAA+GGG 0.638395 tig0017595:-307 Msa1361710:intergenic
TCCGAGGAGGATGAATAAGT+GGG 0.644231 tig0017595:-195 Msa1361710:intergenic
AACACCGTGAACTGAGTCAG+CGG 0.649900 tig0017595:-690 Msa1361710:intergenic
CGACGCCGTTCAATTACCGA+CGG 0.662139 tig0017595:+766 Msa1361710:CDS
AGACATGGTTATCGAACCGG+AGG 0.681488 tig0017595:+1061 Msa1361710:CDS
AGAGAAAGTAGCTCAAGACA+TGG 0.707229 tig0017595:+1046 Msa1361710:CDS
AGAGAAGAAGGATTCCGAGG+AGG 0.707801 tig0017595:-208 Msa1361710:intergenic
ACCGACGGAACAACAAAACG+CGG 0.717720 tig0017595:+781 Msa1361710:CDS
TGAGACCGTGGAAAACGACG+CGG 0.797473 tig0017595:-893 Msa1361700:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTATTGTTATTAGCTT+GGG - tig0017595:252-271 Msa1361710:intergenic 20.0%
!! TTAAATTCTTGGTTGAAATT+TGG - tig0017595:287-306 Msa1361710:intergenic 20.0%
!!! ATTGTTATTGTTATTAGCTT+GGG - tig0017595:252-271 Msa1361710:intergenic 20.0%
!! TTAAATTCTTGGTTGAAATT+TGG - tig0017595:287-306 Msa1361710:intergenic 20.0%
!! CATTGTTATTGTTATTAGCT+TGG - tig0017595:253-272 Msa1361710:intergenic 25.0%
! TTCGAATTCCATTAAACAAA+CGG - tig0017595:549-568 Msa1361710:intergenic 25.0%
!! CATTGTTATTGTTATTAGCT+TGG - tig0017595:253-272 Msa1361710:intergenic 25.0%
! TTCGAATTCCATTAAACAAA+CGG - tig0017595:549-568 Msa1361710:intergenic 25.0%
AATAAGTGGGAATTATTGGT+TGG - tig0017595:185-204 None:intergenic 30.0%
GATGAATAAGTGGGAATTAT+TGG - tig0017595:189-208 None:intergenic 30.0%
! TTTTTGTGATTGAGAGAAGA+AGG - tig0017595:223-242 Msa1361710:intergenic 30.0%
AATGACTATGATTATAGCGA+AGG - tig0017595:315-334 Msa1361710:intergenic 30.0%
TGAAAAACATGATCACACTT+CGG - tig0017595:596-615 Msa1361710:intergenic 30.0%
TTATTCAACGAAATCACTTC+TGG - tig0017595:830-849 Msa1361710:intergenic 30.0%
ATCTGTTTCCTAACCTTATT+GGG - tig0017595:980-999 Msa1361710:intergenic 30.0%
TATCTGTTTCCTAACCTTAT+TGG - tig0017595:981-1000 Msa1361710:intergenic 30.0%
TTAGGAAACAGATAATGAAC+CGG + tig0017595:987-1006 Msa1361710:CDS 30.0%
GTAATAGAGGAAAAAGTTTG+AGG + tig0017595:1092-1111 Msa1361710:CDS 30.0%
!!! CTATTATTGACTTTTGGCTT+TGG - tig0017595:1202-1221 Msa1361710:intergenic 30.0%
!!! TCATCGCTATTATTGACTTT+TGG - tig0017595:1208-1227 Msa1361710:intergenic 30.0%
AATAAGTGGGAATTATTGGT+TGG - tig0017595:185-204 Msa1361710:intergenic 30.0%
GATGAATAAGTGGGAATTAT+TGG - tig0017595:189-208 Msa1361710:intergenic 30.0%
! TTTTTGTGATTGAGAGAAGA+AGG - tig0017595:223-242 Msa1361710:intergenic 30.0%
AATGACTATGATTATAGCGA+AGG - tig0017595:315-334 Msa1361710:intergenic 30.0%
TGAAAAACATGATCACACTT+CGG - tig0017595:596-615 Msa1361710:intergenic 30.0%
TTATTCAACGAAATCACTTC+TGG - tig0017595:830-849 Msa1361710:intergenic 30.0%
ATCTGTTTCCTAACCTTATT+GGG - tig0017595:980-999 Msa1361710:intergenic 30.0%
TATCTGTTTCCTAACCTTAT+TGG - tig0017595:981-1000 Msa1361710:intergenic 30.0%
TTAGGAAACAGATAATGAAC+CGG + tig0017595:987-1006 Msa1361710:CDS 30.0%
GTAATAGAGGAAAAAGTTTG+AGG + tig0017595:1092-1111 Msa1361710:CDS 30.0%
!!! CTATTATTGACTTTTGGCTT+TGG - tig0017595:1202-1221 Msa1361710:intergenic 30.0%
!!! TCATCGCTATTATTGACTTT+TGG - tig0017595:1208-1227 Msa1361710:intergenic 30.0%
! ATTGTTATTAGCTTGGGCTT+GGG - tig0017595:246-265 Msa1361710:intergenic 35.0%
! TATTGTTATTAGCTTGGGCT+TGG - tig0017595:247-266 Msa1361710:intergenic 35.0%
TGGTTGAAATTTGGATTCGT+GGG - tig0017595:278-297 Msa1361710:intergenic 35.0%
TTGGTTGAAATTTGGATTCG+TGG - tig0017595:279-298 Msa1361710:intergenic 35.0%
CTATGATTATAGCGAAGGAA+GGG - tig0017595:310-329 Msa1361710:intergenic 35.0%
ACTATGATTATAGCGAAGGA+AGG - tig0017595:311-330 Msa1361710:intergenic 35.0%
! ACTTCGGAGTATTCAAGAAT+CGG - tig0017595:488-507 Msa1361710:intergenic 35.0%
GATCTTATGGATCTTGACTT+CGG - tig0017595:504-523 Msa1361710:intergenic 35.0%
GAAGTCAAGATCCATAAGAT+CGG + tig0017595:503-522 Msa1361710:CDS 35.0%
! GAACTTCTTTTCCGATCTTA+TGG - tig0017595:517-536 Msa1361710:intergenic 35.0%
TAAGATCGGAAAAGAAGTTC+TGG + tig0017595:517-536 Msa1361710:CDS 35.0%
CGTTGAATAAAACACTGAAC+CGG + tig0017595:840-859 Msa1361710:CDS 35.0%
CGGTTGAATTAAAGAATGTC+CGG - tig0017595:924-943 Msa1361710:intergenic 35.0%
CGGACATTCTTTAATTCAAC+CGG + tig0017595:922-941 Msa1361710:CDS 35.0%
GGACATTCTTTAATTCAACC+GGG + tig0017595:923-942 Msa1361710:CDS 35.0%
ATAGAGGAAAAAGTTTGAGG+CGG + tig0017595:1095-1114 Msa1361710:CDS 35.0%
!!! ACCTGAGTTTTAAATCAGAC+CGG + tig0017595:1122-1141 Msa1361710:CDS 35.0%
GTGCTCTATTAAATATCCAC+CGG - tig0017595:1144-1163 Msa1361710:intergenic 35.0%
GTCAATAATAGCGATGATGA+AGG + tig0017595:1211-1230 Msa1361710:CDS 35.0%
! ATTGTTATTAGCTTGGGCTT+GGG - tig0017595:246-265 Msa1361710:intergenic 35.0%
! TATTGTTATTAGCTTGGGCT+TGG - tig0017595:247-266 Msa1361710:intergenic 35.0%
TGGTTGAAATTTGGATTCGT+GGG - tig0017595:278-297 Msa1361710:intergenic 35.0%
TTGGTTGAAATTTGGATTCG+TGG - tig0017595:279-298 Msa1361710:intergenic 35.0%
CTATGATTATAGCGAAGGAA+GGG - tig0017595:310-329 Msa1361710:intergenic 35.0%
ACTATGATTATAGCGAAGGA+AGG - tig0017595:311-330 Msa1361710:intergenic 35.0%
! ACTTCGGAGTATTCAAGAAT+CGG - tig0017595:488-507 Msa1361710:intergenic 35.0%
GATCTTATGGATCTTGACTT+CGG - tig0017595:504-523 Msa1361710:intergenic 35.0%
GAAGTCAAGATCCATAAGAT+CGG + tig0017595:503-522 Msa1361710:CDS 35.0%
! GAACTTCTTTTCCGATCTTA+TGG - tig0017595:517-536 Msa1361710:intergenic 35.0%
TAAGATCGGAAAAGAAGTTC+TGG + tig0017595:517-536 Msa1361710:CDS 35.0%
CGTTGAATAAAACACTGAAC+CGG + tig0017595:840-859 Msa1361710:CDS 35.0%
CGGTTGAATTAAAGAATGTC+CGG - tig0017595:924-943 Msa1361710:intergenic 35.0%
CGGACATTCTTTAATTCAAC+CGG + tig0017595:922-941 Msa1361710:CDS 35.0%
GGACATTCTTTAATTCAACC+GGG + tig0017595:923-942 Msa1361710:CDS 35.0%
ATAGAGGAAAAAGTTTGAGG+CGG + tig0017595:1095-1114 Msa1361710:CDS 35.0%
!!! ACCTGAGTTTTAAATCAGAC+CGG + tig0017595:1122-1141 Msa1361710:CDS 35.0%
GTGCTCTATTAAATATCCAC+CGG - tig0017595:1144-1163 Msa1361710:intergenic 35.0%
GTCAATAATAGCGATGATGA+AGG + tig0017595:1211-1230 Msa1361710:CDS 35.0%
GGTTGAAATTTGGATTCGTG+GGG - tig0017595:277-296 Msa1361710:intergenic 40.0%
CGAAGGAAGGGTTAAATTCT+TGG - tig0017595:298-317 Msa1361710:intergenic 40.0%
! AGTTGCTGCTCTTTTTCTCA+TGG + tig0017595:337-356 Msa1361710:CDS 40.0%
! GTTGCTGCTCTTTTTCTCAT+GGG + tig0017595:338-357 Msa1361710:CDS 40.0%
GGGAAAGTTTCGATTACTGA+TGG - tig0017595:467-486 Msa1361710:intergenic 40.0%
! CTTCGGAGTATTCAAGAATC+GGG - tig0017595:487-506 Msa1361710:intergenic 40.0%
!!! CGTTTTGGTTTTGAGCTTCA+AGG - tig0017595:748-767 Msa1361710:intergenic 40.0%
TTGTTCCGTCGGTAATTGAA+CGG - tig0017595:774-793 Msa1361710:intergenic 40.0%
AATTCAACCGGGTGAAAACA+CGG + tig0017595:934-953 Msa1361710:CDS 40.0%
!! CACTTTGAAACTGCCCAATA+AGG + tig0017595:964-983 Msa1361710:CDS 40.0%
TGAAACTGCCCAATAAGGTT+AGG + tig0017595:969-988 Msa1361710:CDS 40.0%
TAATGAACCGGCAATTGCAA+CGG + tig0017595:999-1018 Msa1361710:CDS 40.0%
! TGTCTTGAGCTACTTTCTCT+TGG - tig0017595:1046-1065 Msa1361710:intergenic 40.0%
AGAGAAAGTAGCTCAAGACA+TGG + tig0017595:1046-1065 Msa1361710:CDS 40.0%
TCAAGACATGGTTATCGAAC+CGG + tig0017595:1058-1077 Msa1361710:CDS 40.0%
TCTATTACTTCCTTCACCTC+CGG - tig0017595:1080-1099 Msa1361710:intergenic 40.0%
! ACCGGTCTGATTTAAAACTC+AGG - tig0017595:1126-1145 Msa1361710:intergenic 40.0%
!!! TGAGTTTTAAATCAGACCGG+TGG + tig0017595:1125-1144 Msa1361710:CDS 40.0%
! ACAGAAGATGATGGCATGAT+AGG - tig0017595:1256-1275 Msa1361710:intergenic 40.0%
GGTTGAAATTTGGATTCGTG+GGG - tig0017595:277-296 Msa1361710:intergenic 40.0%
CGAAGGAAGGGTTAAATTCT+TGG - tig0017595:298-317 Msa1361710:intergenic 40.0%
! AGTTGCTGCTCTTTTTCTCA+TGG + tig0017595:337-356 Msa1361710:CDS 40.0%
! GTTGCTGCTCTTTTTCTCAT+GGG + tig0017595:338-357 Msa1361710:CDS 40.0%
GGGAAAGTTTCGATTACTGA+TGG - tig0017595:467-486 Msa1361710:intergenic 40.0%
! CTTCGGAGTATTCAAGAATC+GGG - tig0017595:487-506 Msa1361710:intergenic 40.0%
!!! CGTTTTGGTTTTGAGCTTCA+AGG - tig0017595:748-767 Msa1361710:intergenic 40.0%
TTGTTCCGTCGGTAATTGAA+CGG - tig0017595:774-793 Msa1361710:intergenic 40.0%
AATTCAACCGGGTGAAAACA+CGG + tig0017595:934-953 Msa1361710:CDS 40.0%
!! CACTTTGAAACTGCCCAATA+AGG + tig0017595:964-983 Msa1361710:CDS 40.0%
TGAAACTGCCCAATAAGGTT+AGG + tig0017595:969-988 Msa1361710:CDS 40.0%
TAATGAACCGGCAATTGCAA+CGG + tig0017595:999-1018 Msa1361710:CDS 40.0%
! TGTCTTGAGCTACTTTCTCT+TGG - tig0017595:1046-1065 Msa1361710:intergenic 40.0%
AGAGAAAGTAGCTCAAGACA+TGG + tig0017595:1046-1065 Msa1361710:CDS 40.0%
TCAAGACATGGTTATCGAAC+CGG + tig0017595:1058-1077 Msa1361710:CDS 40.0%
TCTATTACTTCCTTCACCTC+CGG - tig0017595:1080-1099 Msa1361710:intergenic 40.0%
! ACCGGTCTGATTTAAAACTC+AGG - tig0017595:1126-1145 Msa1361710:intergenic 40.0%
!!! TGAGTTTTAAATCAGACCGG+TGG + tig0017595:1125-1144 Msa1361710:CDS 40.0%
! ACAGAAGATGATGGCATGAT+AGG - tig0017595:1256-1275 Msa1361710:intergenic 40.0%
TCCCACTTATTCATCCTCCT+CGG + tig0017595:194-213 Msa1361710:CDS 45.0%
TCCGAGGAGGATGAATAAGT+GGG - tig0017595:198-217 Msa1361710:intergenic 45.0%
TTCCGAGGAGGATGAATAAG+TGG - tig0017595:199-218 Msa1361710:intergenic 45.0%
TTGAGAGAAGAAGGATTCCG+AGG - tig0017595:214-233 Msa1361710:intergenic 45.0%
GTTGGAGGAACTAGGTGAAT+CGG - tig0017595:393-412 Msa1361710:intergenic 45.0%
!! GGAGTGTGCCGTTTGTTTAA+TGG + tig0017595:538-557 Msa1361710:CDS 45.0%
ACCACTCGTCAATACACTCT+GGG - tig0017595:619-638 Msa1361710:intergenic 45.0%
AACCACTCGTCAATACACTC+TGG - tig0017595:620-639 Msa1361710:intergenic 45.0%
TGTGACTCAGTGTTTGACTC+AGG - tig0017595:716-735 Msa1361710:intergenic 45.0%
! GTAATTGAACGGCGTCGTTT+TGG - tig0017595:763-782 Msa1361710:intergenic 45.0%
TGGGCAGTTTCAAAGTGAAC+CGG - tig0017595:961-980 Msa1361710:intergenic 45.0%
AATGAACCGGCAATTGCAAC+GGG + tig0017595:1000-1019 Msa1361710:CDS 45.0%
GGAGGTGAAGGAAGTAATAG+AGG + tig0017595:1079-1098 Msa1361710:CDS 45.0%
! AGGAAAAAGTTTGAGGCGGT+TGG + tig0017595:1099-1118 Msa1361710:CDS 45.0%
!!! AGCACCGTCGTTTTTAGCAA+GGG + tig0017595:1159-1178 Msa1361710:CDS 45.0%
AACGCCCTTGCTAAAAACGA+CGG - tig0017595:1166-1185 Msa1361710:intergenic 45.0%
GCAGAGTCAACAGAAGATGA+TGG - tig0017595:1265-1284 Msa1361710:intergenic 45.0%
TCCCACTTATTCATCCTCCT+CGG + tig0017595:194-213 Msa1361710:CDS 45.0%
TCCGAGGAGGATGAATAAGT+GGG - tig0017595:198-217 Msa1361710:intergenic 45.0%
TTCCGAGGAGGATGAATAAG+TGG - tig0017595:199-218 Msa1361710:intergenic 45.0%
TTGAGAGAAGAAGGATTCCG+AGG - tig0017595:214-233 Msa1361710:intergenic 45.0%
GTTGGAGGAACTAGGTGAAT+CGG - tig0017595:393-412 Msa1361710:intergenic 45.0%
!! GGAGTGTGCCGTTTGTTTAA+TGG + tig0017595:538-557 Msa1361710:CDS 45.0%
ACCACTCGTCAATACACTCT+GGG - tig0017595:619-638 Msa1361710:intergenic 45.0%
AACCACTCGTCAATACACTC+TGG - tig0017595:620-639 Msa1361710:intergenic 45.0%
TGTGACTCAGTGTTTGACTC+AGG - tig0017595:716-735 Msa1361710:intergenic 45.0%
! GTAATTGAACGGCGTCGTTT+TGG - tig0017595:763-782 Msa1361710:intergenic 45.0%
TGGGCAGTTTCAAAGTGAAC+CGG - tig0017595:961-980 Msa1361710:intergenic 45.0%
AATGAACCGGCAATTGCAAC+GGG + tig0017595:1000-1019 Msa1361710:CDS 45.0%
GGAGGTGAAGGAAGTAATAG+AGG + tig0017595:1079-1098 Msa1361710:CDS 45.0%
! AGGAAAAAGTTTGAGGCGGT+TGG + tig0017595:1099-1118 Msa1361710:CDS 45.0%
!!! AGCACCGTCGTTTTTAGCAA+GGG + tig0017595:1159-1178 Msa1361710:CDS 45.0%
AACGCCCTTGCTAAAAACGA+CGG - tig0017595:1166-1185 Msa1361710:intergenic 45.0%
GCAGAGTCAACAGAAGATGA+TGG - tig0017595:1265-1284 Msa1361710:intergenic 45.0%
AGAGAAGAAGGATTCCGAGG+AGG - tig0017595:211-230 Msa1361710:intergenic 50.0%
AGAACGAGGTTGGAGGAACT+AGG - tig0017595:401-420 Msa1361710:intergenic 50.0%
! ACCCAGAGTGTATTGACGAG+TGG + tig0017595:615-634 Msa1361710:CDS 50.0%
AACGAGATTCGCGCGACAAA+CGG - tig0017595:663-682 Msa1361710:intergenic 50.0%
AACACCGTGAACTGAGTCAG+CGG - tig0017595:693-712 Msa1361710:intergenic 50.0%
ACCGACGGAACAACAAAACG+CGG + tig0017595:781-800 Msa1361710:CDS 50.0%
!!! TCCGCGTTTTGTTGTTCCGT+CGG - tig0017595:785-804 Msa1361710:intergenic 50.0%
TCGATTGAGATCCACGCGTA+CGG - tig0017595:868-887 Msa1361710:intergenic 50.0%
AGACATGGTTATCGAACCGG+AGG + tig0017595:1061-1080 Msa1361710:CDS 50.0%
!!! GAGCACCGTCGTTTTTAGCA+AGG + tig0017595:1158-1177 Msa1361710:CDS 50.0%
!! TAGCAAGGGCGTTGTCGTTT+AGG + tig0017595:1173-1192 Msa1361710:CDS 50.0%
AGAGAAGAAGGATTCCGAGG+AGG - tig0017595:211-230 Msa1361710:intergenic 50.0%
AGAACGAGGTTGGAGGAACT+AGG - tig0017595:401-420 Msa1361710:intergenic 50.0%
! ACCCAGAGTGTATTGACGAG+TGG + tig0017595:615-634 Msa1361710:CDS 50.0%
AACGAGATTCGCGCGACAAA+CGG - tig0017595:663-682 Msa1361710:intergenic 50.0%
AACACCGTGAACTGAGTCAG+CGG - tig0017595:693-712 Msa1361710:intergenic 50.0%
ACCGACGGAACAACAAAACG+CGG + tig0017595:781-800 Msa1361710:CDS 50.0%
!!! TCCGCGTTTTGTTGTTCCGT+CGG - tig0017595:785-804 Msa1361710:intergenic 50.0%
TCGATTGAGATCCACGCGTA+CGG - tig0017595:868-887 Msa1361710:intergenic 50.0%
AGACATGGTTATCGAACCGG+AGG + tig0017595:1061-1080 Msa1361710:CDS 50.0%
!!! GAGCACCGTCGTTTTTAGCA+AGG + tig0017595:1158-1177 Msa1361710:CDS 50.0%
!! TAGCAAGGGCGTTGTCGTTT+AGG + tig0017595:1173-1192 Msa1361710:CDS 50.0%
TAGGTGAATCGGAGCAGCGA+CGG - tig0017595:382-401 Msa1361710:intergenic 55.0%
CTCGTTCTCCCCATCACCAA+CGG + tig0017595:413-432 Msa1361710:CDS 55.0%
ACGAGATTCGCGCGACAAAC+GGG - tig0017595:662-681 Msa1361710:intergenic 55.0%
!! TGAACTGAGTCAGCGGGTTG+AGG - tig0017595:686-705 Msa1361710:intergenic 55.0%
!! CAACCCGCTGACTCAGTTCA+CGG + tig0017595:686-705 Msa1361710:CDS 55.0%
ACACCGTGAACTGAGTCAGC+GGG - tig0017595:692-711 Msa1361710:intergenic 55.0%
CGACGCCGTTCAATTACCGA+CGG + tig0017595:766-785 Msa1361710:CDS 55.0%
CGCGTGGATCTCAATCGAAC+CGG + tig0017595:870-889 Msa1361710:CDS 55.0%
TGAGACCGTGGAAAACGACG+CGG - tig0017595:896-915 Msa1361710:intergenic 55.0%
TTTCCACGGTCTCACTCGAC+CGG + tig0017595:902-921 Msa1361710:CDS 55.0%
AACCGGGTGAAAACACGGAC+CGG + tig0017595:939-958 Msa1361710:CDS 55.0%
! AACCGGTCCGTGTTTTCACC+CGG - tig0017595:944-963 Msa1361710:intergenic 55.0%
TACTCGCCCGTTGCAATTGC+CGG - tig0017595:1009-1028 Msa1361710:intergenic 55.0%
GGTTATCGAACCGGAGGTGA+AGG + tig0017595:1067-1086 Msa1361710:CDS 55.0%
TAGGTGAATCGGAGCAGCGA+CGG - tig0017595:382-401 Msa1361710:intergenic 55.0%
CTCGTTCTCCCCATCACCAA+CGG + tig0017595:413-432 Msa1361710:CDS 55.0%
ACGAGATTCGCGCGACAAAC+GGG - tig0017595:662-681 Msa1361710:intergenic 55.0%
!! TGAACTGAGTCAGCGGGTTG+AGG - tig0017595:686-705 Msa1361710:intergenic 55.0%
!! CAACCCGCTGACTCAGTTCA+CGG + tig0017595:686-705 Msa1361710:CDS 55.0%
ACACCGTGAACTGAGTCAGC+GGG - tig0017595:692-711 Msa1361710:intergenic 55.0%
CGACGCCGTTCAATTACCGA+CGG + tig0017595:766-785 Msa1361710:CDS 55.0%
CGCGTGGATCTCAATCGAAC+CGG + tig0017595:870-889 Msa1361710:CDS 55.0%
TGAGACCGTGGAAAACGACG+CGG - tig0017595:896-915 Msa1361710:intergenic 55.0%
TTTCCACGGTCTCACTCGAC+CGG + tig0017595:902-921 Msa1361710:CDS 55.0%
AACCGGGTGAAAACACGGAC+CGG + tig0017595:939-958 Msa1361710:CDS 55.0%
! AACCGGTCCGTGTTTTCACC+CGG - tig0017595:944-963 Msa1361710:intergenic 55.0%
TACTCGCCCGTTGCAATTGC+CGG - tig0017595:1009-1028 Msa1361710:intergenic 55.0%
GGTTATCGAACCGGAGGTGA+AGG + tig0017595:1067-1086 Msa1361710:CDS 55.0%
GGAGCAGCGACGGATGTAGA+TGG - tig0017595:372-391 Msa1361710:intergenic 60.0%
GATGGGGAGAACGAGGTTGG+AGG - tig0017595:408-427 Msa1361710:intergenic 60.0%
!! GGTGATGGGGAGAACGAGGT+TGG - tig0017595:411-430 Msa1361710:intergenic 60.0%
!! CGTTGGTGATGGGGAGAACG+AGG - tig0017595:415-434 Msa1361710:intergenic 60.0%
!! CTCTACGGCCGTTGGTGATG+GGG - tig0017595:424-443 Msa1361710:intergenic 60.0%
!! GCTCTACGGCCGTTGGTGAT+GGG - tig0017595:425-444 Msa1361710:intergenic 60.0%
CATCACCAACGGCCGTAGAG+CGG + tig0017595:424-443 Msa1361710:CDS 60.0%
GAGATCCACGCGTACGGTTC+CGG - tig0017595:862-881 Msa1361710:intergenic 60.0%
GGAGCAGCGACGGATGTAGA+TGG - tig0017595:372-391 Msa1361710:intergenic 60.0%
GATGGGGAGAACGAGGTTGG+AGG - tig0017595:408-427 Msa1361710:intergenic 60.0%
!! GGTGATGGGGAGAACGAGGT+TGG - tig0017595:411-430 Msa1361710:intergenic 60.0%
!! CGTTGGTGATGGGGAGAACG+AGG - tig0017595:415-434 Msa1361710:intergenic 60.0%
!! CTCTACGGCCGTTGGTGATG+GGG - tig0017595:424-443 Msa1361710:intergenic 60.0%
!! GCTCTACGGCCGTTGGTGAT+GGG - tig0017595:425-444 Msa1361710:intergenic 60.0%
CATCACCAACGGCCGTAGAG+CGG + tig0017595:424-443 Msa1361710:CDS 60.0%
GAGATCCACGCGTACGGTTC+CGG - tig0017595:862-881 Msa1361710:intergenic 60.0%
! CGCTCTACGGCCGTTGGTGA+TGG - tig0017595:426-445 Msa1361710:intergenic 65.0%
CTGAACCGGAACCGTACGCG+TGG + tig0017595:854-873 Msa1361710:CDS 65.0%
!! ACCGGCCGCGTCGTTTTCCA+CGG + tig0017595:888-907 Msa1361710:CDS 65.0%
ACCGTGGAAAACGACGCGGC+CGG - tig0017595:892-911 Msa1361710:intergenic 65.0%
TGTCCGGTCGAGTGAGACCG+TGG - tig0017595:908-927 Msa1361710:intergenic 65.0%
! CGCTCTACGGCCGTTGGTGA+TGG - tig0017595:426-445 Msa1361710:intergenic 65.0%
CTGAACCGGAACCGTACGCG+TGG + tig0017595:854-873 Msa1361710:CDS 65.0%
!! ACCGGCCGCGTCGTTTTCCA+CGG + tig0017595:888-907 Msa1361710:CDS 65.0%
ACCGTGGAAAACGACGCGGC+CGG - tig0017595:892-911 Msa1361710:intergenic 65.0%
TGTCCGGTCGAGTGAGACCG+TGG - tig0017595:908-927 Msa1361710:intergenic 65.0%
CACCAACGGCCGTAGAGCGG+TGG + tig0017595:427-446 Msa1361710:CDS 70.0%
CACCAACGGCCGTAGAGCGG+TGG + tig0017595:427-446 Msa1361710:CDS 70.0%
CGCCACCGCTCTACGGCCGT+TGG - tig0017595:432-451 Msa1361710:intergenic 75.0%
GCCGTAGAGCGGTGGCGCGT+GGG + tig0017595:435-454 Msa1361710:CDS 75.0%
GCCCACGCGCCACCGCTCTA+CGG - tig0017595:439-458 Msa1361710:intergenic 75.0%
CGCCACCGCTCTACGGCCGT+TGG - tig0017595:432-451 Msa1361710:intergenic 75.0%
GCCGTAGAGCGGTGGCGCGT+GGG + tig0017595:435-454 Msa1361710:CDS 75.0%
GCCCACGCGCCACCGCTCTA+CGG - tig0017595:439-458 Msa1361710:intergenic 75.0%
! GGCCGTAGAGCGGTGGCGCG+TGG + tig0017595:434-453 Msa1361710:CDS 80.0%
! GGCCGTAGAGCGGTGGCGCG+TGG + tig0017595:434-453 Msa1361710:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0017595 gene 170 1300 170 ID=Msa1361710;Name=Msa1361710
tig0017595 mRNA 170 1300 170 ID=Msa1361710-mRNA-1;Parent=Msa1361710;Name=Msa1361710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|376
tig0017595 exon 170 1300 170 ID=Msa1361710-mRNA-1:exon:12607;Parent=Msa1361710-mRNA-1
tig0017595 CDS 170 1300 170 ID=Msa1361710-mRNA-1:cds;Parent=Msa1361710-mRNA-1
Gene Sequence

>Msa1361710

ATGAAAAAAGATCCAACCAATAATTCCCACTTATTCATCCTCCTCGGAATCCTTCTTCTCTCAATCACAAAAACCCAAGCCCAAGCTAATAACAATAACAATGACCCCACGAATCCAAATTTCAACCAAGAATTTAACCCTTCCTTCGCTATAATCATAGTCATTTTAGTTGCTGCTCTTTTTCTCATGGGCTTTTTCTCCATCTACATCCGTCGCTGCTCCGATTCACCTAGTTCCTCCAACCTCGTTCTCCCCATCACCAACGGCCGTAGAGCGGTGGCGCGTGGGCTCGATCCATCAGTAATCGAAACTTTCCCGATTCTTGAATACTCCGAAGTCAAGATCCATAAGATCGGAAAAGAAGTTCTGGAGTGTGCCGTTTGTTTAATGGAATTCGAAGACACTGAAACACTGCGTTTGATTCCGAAGTGTGATCATGTTTTTCACCCAGAGTGTATTGACGAGTGGTTATCTTCTCACACAACGTGTCCCGTTTGTCGCGCGAATCTCGTTCCTCAACCCGCTGACTCAGTTCACGGTGTTCCTGAGTCAAACACTGAGTCACAGCAACAAGACCTTGAAGCTCAAAACCAAAACGACGCCGTTCAATTACCGACGGAACAACAAAACGCGGAATCTGACTCAGTATTACTTGCTCCAGAAGTGATTTCGTTGAATAAAACACTGAACCGGAACCGTACGCGTGGATCTCAATCGAACCGGCCGCGTCGTTTTCCACGGTCTCACTCGACCGGACATTCTTTAATTCAACCGGGTGAAAACACGGACCGGTTCACTTTGAAACTGCCCAATAAGGTTAGGAAACAGATAATGAACCGGCAATTGCAACGGGCGAGTAGTTTGATTACGTTACCAAGAGAAAGTAGCTCAAGACATGGTTATCGAACCGGAGGTGAAGGAAGTAATAGAGGAAAAAGTTTGAGGCGGTTGGACCTGAGTTTTAAATCAGACCGGTGGATATTTAATAGAGCACCGTCGTTTTTAGCAAGGGCGTTGTCGTTTAGGTCGCCAAAGCCAAAAGTCAATAATAGCGATGATGAAGGAACTTCTTCTGCAGCTGCTCCTATCATGCCATCATCTTCTGTTGACTCTGCACGCCCTCAGATTTGA
Protein sequence

>Msa1361710

MKKDPTNNSHLFILLGILLLSITKTQAQANNNNNDPTNPNFNQEFNPSFAIIIVILVAALFLMGFFSIYIRRCSDSPSSSNLVLPITNGRRAVARGLDPSVIETFPILEYSEVKIHKIGKEVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPADSVHGVPESNTESQQQDLEAQNQNDAVQLPTEQQNAESDSVLLAPEVISLNKTLNRNRTRGSQSNRPRRFPRSHSTGHSLIQPGENTDRFTLKLPNKVRKQIMNRQLQRASSLITLPRESSSRHGYRTGGEGSNRGKSLRRLDLSFKSDRWIFNRAPSFLARALSFRSPKPKVNNSDDEGTSSAAAPIMPSSSVDSARPQI*