AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008440 MtrunA17_Chr1g0147421 97.514 362 7 2 1 361 1 361 0.0 731
Msa0008440 MtrunA17_Chr3g0139331 59.780 363 111 14 17 361 1 346 4.90e-119 348
Msa0008440 MtrunA17_Chr6g0484441 75.625 160 35 3 24 183 2 157 9.01e-82 252
Msa0008440 MtrunA17_Chr2g0316971 72.903 155 38 2 27 178 23 176 4.69e-80 249
Msa0008440 MtrunA17_Chr4g0060931 65.882 170 52 3 17 183 7 173 1.22e-76 240
Msa0008440 MtrunA17_Chr3g0091921 65.476 168 51 4 20 183 8 172 1.01e-74 233
Msa0008440 MtrunA17_Chr6g0461661 62.941 170 59 2 27 193 18 186 3.18e-73 232
Msa0008440 MtrunA17_Chr7g0253011 64.535 172 54 4 27 193 17 186 2.41e-72 229
Msa0008440 MtrunA17_Chr6g0453451 61.326 181 60 5 6 183 3 176 6.06e-72 227
Msa0008440 MtrunA17_Chr3g0144271 54.187 203 85 2 1 199 1 199 3.24e-68 220
Msa0008440 MtrunA17_Chr7g0217721 59.412 170 50 3 30 183 22 188 8.85e-64 206
Msa0008440 MtrunA17_Chr2g0312321 57.485 167 62 4 24 187 8 168 3.32e-60 196
Msa0008440 MtrunA17_Chr1g0183741 52.830 159 71 2 19 177 2 156 2.63e-58 190
Msa0008440 MtrunA17_Chr2g0309331 47.826 207 95 7 24 225 7 205 2.62e-57 189
Msa0008440 MtrunA17_Chr7g0217711 63.768 138 47 2 27 164 19 153 3.91e-57 184
Msa0008440 MtrunA17_Chr4g0017921 59.740 154 54 4 27 177 8 156 1.39e-56 188
Msa0008440 MtrunA17_Chr7g0261411 46.829 205 100 3 19 223 2 197 1.40e-56 186
Msa0008440 MtrunA17_Chr2g0318101 50.575 174 67 3 20 178 8 177 2.90e-55 184
Msa0008440 MtrunA17_Chr4g0018391 56.494 154 60 4 27 177 7 156 2.91e-55 184
Msa0008440 MtrunA17_Chr4g0056541 56.494 154 60 4 27 177 7 156 7.54e-55 184
Msa0008440 MtrunA17_Chr7g0252971 48.663 187 77 4 24 195 5 187 8.94e-55 183
Msa0008440 MtrunA17_Chr5g0417791 50.000 180 72 5 27 193 3 177 9.82e-55 180
Msa0008440 MtrunA17_Chr5g0398971 54.545 154 65 3 27 177 7 158 1.66e-54 182
Msa0008440 MtrunA17_Chr3g0124761 52.907 172 67 4 24 188 4 168 1.71e-54 181
Msa0008440 MtrunA17_Chr7g0263931 51.807 166 74 2 17 177 1 165 2.34e-54 181
Msa0008440 MtrunA17_Chr8g0359921 52.381 168 73 4 26 189 13 177 4.27e-54 181
Msa0008440 MtrunA17_Chr2g0318081 54.037 161 66 4 26 183 15 170 7.42e-54 181
Msa0008440 MtrunA17_Chr6g0481091 55.769 156 63 4 27 179 6 158 1.05e-53 177
Msa0008440 MtrunA17_Chr2g0309891 57.595 158 58 6 26 178 5 158 1.53e-53 180
Msa0008440 MtrunA17_Chr8g0346001 48.370 184 79 4 24 194 12 192 2.57e-53 182
Msa0008440 MtrunA17_Chr5g0405211 52.229 157 68 4 24 177 5 157 2.84e-53 179
Msa0008440 MtrunA17_Chr4g0047841 46.701 197 66 5 27 196 15 199 5.77e-53 178
Msa0008440 MtrunA17_Chr1g0200561 49.708 171 79 4 16 183 8 174 1.05e-52 178
Msa0008440 MtrunA17_Chr3g0109821 56.051 157 62 4 26 178 5 158 1.39e-52 184
Msa0008440 MtrunA17_Chr5g0433781 56.410 156 62 4 26 178 5 157 2.50e-52 183
Msa0008440 MtrunA17_Chr2g0326361 47.179 195 82 4 26 203 13 203 1.03e-51 174
Msa0008440 MtrunA17_Chr8g0384721 50.289 173 73 5 17 184 1 165 1.11e-51 173
Msa0008440 MtrunA17_Chr4g0042561 50.289 173 72 5 17 182 1 166 1.17e-51 172
Msa0008440 MtrunA17_Chr8g0372121 48.765 162 76 4 24 182 3 160 1.36e-51 174
Msa0008440 MtrunA17_Chr7g0214071 49.730 185 72 6 24 195 12 188 3.10e-51 171
Msa0008440 MtrunA17_Chr3g0092671 52.866 157 70 2 29 183 7 161 5.74e-50 175
Msa0008440 MtrunA17_Chr3g0130731 48.235 170 80 4 24 189 4 169 7.17e-49 166
Msa0008440 MtrunA17_Chr1g0197361 50.318 157 74 2 29 183 10 164 1.31e-48 172
Msa0008440 MtrunA17_Chr8g0361731 45.665 173 83 3 16 178 3 174 6.24e-47 164
Msa0008440 MtrunA17_Chr5g0400461 49.693 163 72 5 26 181 5 164 1.62e-46 161
Msa0008440 MtrunA17_Chr3g0128151 54.194 155 65 4 26 177 21 172 6.77e-45 162
Msa0008440 MtrunA17_Chr5g0417001 45.122 164 80 2 24 178 11 173 7.09e-45 158
Msa0008440 MtrunA17_Chr4g0054791 44.974 189 84 6 17 196 1 178 1.09e-44 156
Msa0008440 MtrunA17_Chr6g0453131 43.017 179 86 4 10 178 2 174 6.92e-44 155
Msa0008440 MtrunA17_Chr5g0428991 52.597 154 67 4 27 177 25 175 1.57e-43 159
Msa0008440 MtrunA17_Chr3g0113001 66.667 111 31 2 77 183 14 122 7.02e-43 150
Msa0008440 MtrunA17_Chr4g0076731 45.732 164 85 4 23 186 50 209 1.12e-42 153
Msa0008440 MtrunA17_Chr1g0197351 50.311 161 68 4 26 177 41 198 2.81e-42 153
Msa0008440 MtrunA17_Chr3g0130101 48.701 154 73 4 29 179 9 159 8.32e-42 149
Msa0008440 MtrunA17_Chr5g0442771 40.571 175 92 3 21 184 12 185 9.09e-42 148
Msa0008440 MtrunA17_Chr3g0128111 50.000 152 70 4 30 178 45 193 4.02e-41 144
Msa0008440 MtrunA17_Chr1g0201021 50.000 160 70 6 29 183 21 175 7.40e-41 151
Msa0008440 MtrunA17_Chr4g0038751 43.125 160 85 3 24 182 12 166 4.81e-39 140
Msa0008440 MtrunA17_Chr2g0311651 39.683 189 97 5 11 183 5 192 8.30e-39 140
Msa0008440 MtrunA17_Chr8g0385991 36.199 221 118 5 27 231 14 227 9.42e-39 137
Msa0008440 MtrunA17_Chr2g0311661 38.830 188 99 4 11 183 5 191 2.82e-38 138
Msa0008440 MtrunA17_Chr8g0364791 45.455 154 78 4 27 177 6 156 2.83e-38 142
Msa0008440 MtrunA17_Chr8g0384201 43.506 154 81 4 27 177 6 156 3.32e-36 137
Msa0008440 MtrunA17_Chr3g0131911 38.605 215 109 8 27 231 14 215 3.35e-36 131
Msa0008440 MtrunA17_Chr8g0345671 44.667 150 76 3 27 174 11 155 7.16e-34 129
Msa0008440 MtrunA17_Chr4g0026141 44.444 135 70 2 24 154 2 135 1.01e-33 125
Msa0008440 MtrunA17_Chr3g0113031 53.600 125 50 4 89 207 1 123 2.23e-32 122
Msa0008440 MtrunA17_Chr8g0345711 42.759 145 78 3 25 167 10 151 1.42e-31 117
Msa0008440 MtrunA17_Chr8g0345691 45.736 129 67 2 27 153 12 139 3.29e-31 122
Msa0008440 MtrunA17_Chr4g0050701 39.752 161 77 4 27 178 11 160 5.57e-31 116
Msa0008440 MtrunA17_Chr2g0321631 42.143 140 69 4 28 159 5 140 6.27e-31 117
Msa0008440 MtrunA17_Chr2g0321741 41.096 146 75 4 56 200 20 155 1.02e-30 119
Msa0008440 MtrunA17_Chr7g0266701 36.257 171 97 5 25 184 2 171 2.28e-30 116
Msa0008440 MtrunA17_Chr8g0345701 43.243 148 65 4 22 153 2 146 1.29e-29 112
Msa0008440 MtrunA17_Chr8g0345731 38.312 154 89 4 25 174 22 173 1.67e-28 109
Msa0008440 MtrunA17_Chr8g0345721 35.079 191 83 4 3 153 2 191 7.53e-28 108
Msa0008440 MtrunA17_Chr7g0243371 55.696 79 35 0 82 160 18 96 2.19e-25 99.0
Msa0008440 MtrunA17_Chr8g0384351 41.060 151 67 5 27 177 10 138 4.80e-23 94.7
Msa0008440 MtrunA17_Chr8g0345741 40.678 118 67 2 38 153 2 118 4.80e-23 94.0
Msa0008440 MtrunA17_Chr3g0130321 35.912 181 92 7 27 194 7 176 5.30e-22 92.8
Msa0008440 MtrunA17_Chr7g0251661 35.821 134 79 5 24 155 7 135 1.36e-18 82.0
Msa0008440 MtrunA17_Chr7g0251651 34.351 131 79 5 27 155 18 143 2.43e-17 79.3
Msa0008440 MtrunA17_Chr3g0113011 60.000 50 19 1 27 76 19 67 7.73e-16 71.6
Msa0008440 MtrunA17_Chr4g0046431 29.808 208 123 9 27 219 68 267 5.04e-15 75.1
Msa0008440 MtrunA17_Chr3g0113041 63.043 46 16 1 31 76 23 67 5.97e-15 69.3
Msa0008440 MtrunA17_Chr7g0251671 31.343 134 85 4 24 155 7 135 1.43e-14 70.9
Msa0008440 MtrunA17_Chr2g0282871 28.696 230 128 10 27 240 53 262 3.35e-14 72.4
Msa0008440 MtrunA17_Chr2g0324961 34.118 170 85 8 27 178 49 209 5.20e-14 71.6
Msa0008440 MtrunA17_Chr1g0198751 28.708 209 118 9 27 217 58 253 2.96e-11 64.7
Msa0008440 MtrunA17_Chr7g0274971 30.000 180 112 8 33 205 11 183 5.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008440 AT2G24430.2 51.966 356 102 9 21 358 10 314 1.39e-104 310
Msa0008440 AT2G24430.1 51.966 356 102 9 21 358 10 314 1.39e-104 310
Msa0008440 AT3G18400.1 73.750 160 39 2 24 183 2 158 2.36e-82 253
Msa0008440 AT5G53950.1 71.250 160 42 2 25 181 15 173 2.46e-79 248
Msa0008440 AT5G61430.1 67.647 170 49 3 22 188 11 177 1.07e-76 239
Msa0008440 AT3G15170.1 70.000 160 44 2 22 178 15 173 4.90e-76 237
Msa0008440 AT5G07680.2 68.485 165 46 3 27 188 3 164 6.02e-76 237
Msa0008440 AT5G07680.1 64.641 181 54 4 15 188 1 178 6.37e-76 238
Msa0008440 AT1G76420.1 64.671 167 58 1 16 182 11 176 1.04e-73 232
Msa0008440 AT5G39610.1 63.043 184 54 5 22 202 15 187 1.25e-72 228
Msa0008440 AT5G18270.2 69.481 154 42 3 27 177 21 172 2.15e-70 223
Msa0008440 AT5G18270.1 68.831 154 43 3 27 177 21 172 8.62e-70 222
Msa0008440 AT3G29035.1 61.202 183 64 4 8 186 5 184 5.59e-69 219
Msa0008440 AT3G04060.1 60.773 181 61 4 18 195 11 184 7.49e-68 217
Msa0008440 AT4G27410.2 53.216 171 70 5 19 183 2 168 1.66e-58 192
Msa0008440 AT3G12977.1 48.058 206 85 6 24 214 15 213 3.02e-58 190
Msa0008440 AT4G10350.1 59.355 155 56 4 27 177 9 160 4.18e-57 189
Msa0008440 AT1G56010.2 39.716 282 145 9 24 291 16 286 1.40e-56 187
Msa0008440 AT1G33280.1 59.740 154 54 4 27 177 8 156 1.68e-56 187
Msa0008440 AT1G12260.2 54.430 158 65 4 27 181 7 160 5.43e-55 184
Msa0008440 AT4G27410.3 48.936 188 69 6 19 183 2 185 5.60e-55 183
Msa0008440 AT2G18060.3 35.185 324 181 9 26 331 8 320 5.83e-55 184
Msa0008440 AT2G18060.1 35.185 324 181 9 26 331 8 320 5.83e-55 184
Msa0008440 AT1G12260.1 54.430 158 65 4 27 181 7 160 7.57e-55 185
Msa0008440 AT1G62700.1 55.063 158 64 4 27 181 7 160 3.55e-54 183
Msa0008440 AT1G62700.2 55.063 158 64 4 27 181 7 160 3.55e-54 183
Msa0008440 AT1G69490.1 53.659 164 68 4 24 182 6 166 3.81e-54 179
Msa0008440 AT3G04070.2 50.847 177 75 4 20 185 3 178 3.87e-54 182
Msa0008440 AT1G65910.1 55.280 161 66 4 26 183 5 162 3.94e-54 188
Msa0008440 AT4G28530.1 48.851 174 71 2 19 177 2 172 4.83e-54 182
Msa0008440 AT3G10500.1 56.522 161 64 4 26 183 8 165 5.88e-54 186
Msa0008440 AT1G52890.1 53.459 159 70 3 26 183 13 168 1.27e-53 179
Msa0008440 AT1G61110.1 51.479 169 67 4 27 182 16 182 1.54e-53 179
Msa0008440 AT4G36160.1 53.548 155 65 4 26 177 9 159 1.74e-53 181
Msa0008440 AT4G36160.3 53.548 155 65 4 26 177 9 159 1.74e-53 181
Msa0008440 AT4G36160.2 53.548 155 65 4 26 177 13 163 1.75e-53 181
Msa0008440 AT1G71930.2 51.592 157 69 4 24 177 6 158 2.45e-53 179
Msa0008440 AT1G71930.1 51.592 157 69 4 24 177 6 158 2.45e-53 179
Msa0008440 AT1G01720.1 53.086 162 67 4 27 183 7 164 3.05e-53 177
Msa0008440 AT3G15500.1 53.459 159 70 3 26 183 13 168 4.76e-53 178
Msa0008440 AT5G62380.2 52.795 161 69 4 27 184 7 163 6.98e-53 179
Msa0008440 AT5G62380.1 52.795 161 69 4 27 184 7 163 6.98e-53 179
Msa0008440 AT3G17730.1 55.844 154 62 4 27 177 6 156 9.00e-53 175
Msa0008440 AT3G03200.1 57.051 156 60 4 26 177 5 157 9.93e-53 181
Msa0008440 AT3G61910.1 47.802 182 75 4 24 188 8 186 1.16e-52 177
Msa0008440 AT2G46770.1 50.877 171 64 5 24 177 13 180 1.25e-52 178
Msa0008440 AT5G04410.1 55.280 161 66 4 26 183 8 165 3.19e-52 182
Msa0008440 AT3G04070.1 46.632 193 75 4 20 185 3 194 1.02e-51 176
Msa0008440 AT1G79580.3 56.410 156 59 5 26 177 16 166 1.04e-51 176
Msa0008440 AT1G79580.5 56.410 156 59 5 26 177 16 166 1.04e-51 176
Msa0008440 AT1G79580.4 56.410 156 59 5 26 177 16 166 1.04e-51 176
Msa0008440 AT1G79580.2 56.410 156 59 5 26 177 16 166 1.04e-51 176
Msa0008440 AT1G79580.1 56.410 156 59 5 26 177 16 166 1.04e-51 176
Msa0008440 AT5G66300.1 51.613 155 69 3 26 177 11 162 1.29e-51 174
Msa0008440 AT5G17260.1 56.410 156 61 4 26 177 5 157 1.42e-51 178
Msa0008440 AT5G08790.1 52.096 167 70 4 24 184 4 166 1.68e-51 173
Msa0008440 AT5G63790.1 52.976 168 67 5 24 184 47 209 6.27e-51 172
Msa0008440 AT5G63790.2 52.976 168 67 5 24 184 57 219 6.81e-51 172
Msa0008440 AT3G10490.1 52.727 165 69 5 19 178 19 179 2.39e-49 166
Msa0008440 AT3G10480.1 56.329 158 58 6 26 177 26 178 6.75e-49 171
Msa0008440 AT1G77450.1 51.220 164 66 4 27 183 10 166 7.04e-49 165
Msa0008440 AT1G32770.1 48.810 168 69 5 24 177 13 177 1.25e-48 167
Msa0008440 AT3G15510.1 47.305 167 69 3 31 182 21 183 1.63e-48 167
Msa0008440 AT3G10480.2 55.128 156 62 5 26 177 26 177 2.57e-48 169
Msa0008440 AT5G61430.2 67.826 115 32 2 77 188 2 114 2.74e-48 164
Msa0008440 AT5G46590.1 51.282 156 70 4 26 177 5 158 6.77e-48 164
Msa0008440 AT3G10490.2 53.049 164 68 5 19 177 19 178 8.77e-48 168
Msa0008440 AT5G46590.2 56.818 132 53 3 26 155 5 134 9.96e-48 163
Msa0008440 AT4G17980.1 51.572 159 67 4 26 177 5 160 1.03e-47 162
Msa0008440 AT5G13180.1 50.318 157 73 3 27 182 14 166 2.49e-47 161
Msa0008440 AT1G33060.2 52.500 160 70 4 25 181 22 178 2.57e-47 170
Msa0008440 AT1G33060.1 52.500 160 70 4 25 181 22 178 2.58e-47 170
Msa0008440 AT1G54330.1 52.795 161 67 5 26 183 5 159 2.67e-47 162
Msa0008440 AT4G17980.2 51.572 159 67 4 26 177 5 160 3.06e-47 162
Msa0008440 AT4G35580.1 53.846 156 66 4 25 177 7 159 9.92e-47 166
Msa0008440 AT4G35580.3 53.846 156 66 4 25 177 7 159 1.09e-46 166
Msa0008440 AT4G35580.2 53.846 156 66 4 25 177 7 159 1.13e-46 166
Msa0008440 AT1G52880.1 50.932 161 61 4 31 177 21 177 2.95e-45 158
Msa0008440 AT1G26870.1 43.429 175 88 2 14 178 3 176 3.61e-45 160
Msa0008440 AT1G34180.3 50.000 158 73 4 29 183 18 172 1.05e-44 159
Msa0008440 AT5G39820.1 41.489 188 85 4 14 178 7 192 1.73e-44 156
Msa0008440 AT2G02450.2 47.561 164 82 4 29 192 53 212 3.26e-44 157
Msa0008440 AT2G02450.1 47.561 164 82 4 29 192 53 212 3.31e-44 157
Msa0008440 AT1G34190.1 50.000 158 73 4 29 183 18 172 6.44e-44 159
Msa0008440 AT1G34180.1 50.000 158 73 4 29 183 18 172 8.13e-44 159
Msa0008440 AT2G33480.1 50.658 152 68 4 27 177 15 160 2.76e-43 151
Msa0008440 AT3G10480.3 47.120 191 57 7 26 177 26 211 5.15e-43 156
Msa0008440 AT5G24590.2 45.652 184 91 5 26 202 12 193 6.10e-43 155
Msa0008440 AT3G49530.2 50.000 156 73 4 25 177 11 164 7.52e-43 154
Msa0008440 AT1G34180.4 46.471 170 73 4 29 183 18 184 9.46e-43 154
Msa0008440 AT2G43000.1 42.945 163 88 3 22 182 13 172 9.64e-43 150
Msa0008440 AT2G33480.2 50.000 156 61 5 27 177 15 158 1.70e-42 149
Msa0008440 AT3G49530.1 50.314 159 68 5 25 177 11 164 1.73e-42 154
Msa0008440 AT5G64060.1 46.154 156 78 4 27 179 6 158 3.24e-42 150
Msa0008440 AT5G09330.5 50.000 154 71 4 27 177 6 156 4.07e-42 153
Msa0008440 AT5G09330.2 50.000 154 71 4 27 177 6 156 4.07e-42 153
Msa0008440 AT5G09330.4 50.000 154 71 4 27 177 6 156 4.07e-42 153
Msa0008440 AT5G09330.3 50.000 154 71 4 27 177 6 156 4.07e-42 153
Msa0008440 AT5G09330.1 50.000 154 71 4 27 177 6 156 4.07e-42 153
Msa0008440 AT1G34180.2 46.471 170 73 4 29 183 18 184 5.90e-42 154
Msa0008440 AT1G32870.3 48.370 184 78 7 7 183 29 202 1.67e-41 153
Msa0008440 AT2G27300.1 49.032 155 68 5 26 179 13 157 4.21e-41 147
Msa0008440 AT1G32870.2 51.235 162 69 5 27 183 10 166 4.30e-41 151
Msa0008440 AT1G32870.1 51.235 162 69 5 27 183 10 166 4.85e-41 151
Msa0008440 AT1G32510.1 45.783 166 80 4 27 183 6 170 1.58e-40 144
Msa0008440 AT2G17040.1 43.226 155 82 3 29 182 8 157 5.48e-40 143
Msa0008440 AT5G22290.1 44.578 166 79 5 26 190 20 173 1.42e-38 140
Msa0008440 AT1G56010.1 37.991 229 117 9 77 291 2 219 5.72e-37 134
Msa0008440 AT3G12977.2 47.059 153 60 5 77 214 14 160 1.14e-36 132
Msa0008440 AT3G12910.1 38.378 185 95 6 18 184 9 192 6.47e-36 132
Msa0008440 AT4G28530.2 47.059 136 57 1 19 139 2 137 1.21e-35 132
Msa0008440 AT3G44290.2 48.413 126 61 3 29 153 16 138 2.09e-35 129
Msa0008440 AT4G10350.2 57.798 109 40 3 73 177 7 113 2.91e-35 130
Msa0008440 AT3G44290.1 40.556 180 87 6 29 203 16 180 1.15e-34 130
Msa0008440 AT5G04395.1 44.371 151 69 3 19 155 20 169 1.39e-33 123
Msa0008440 AT3G44350.2 35.542 166 100 3 25 184 3 167 3.08e-27 108
Msa0008440 AT5G64530.1 36.782 174 78 6 27 183 3 161 1.05e-26 105
Msa0008440 AT5G64530.2 42.748 131 58 4 27 155 3 118 1.62e-26 103
Msa0008440 AT2G33480.3 54.167 96 41 2 83 177 10 103 3.70e-26 104
Msa0008440 AT3G44350.1 38.462 143 83 2 25 163 3 144 1.07e-25 101
Msa0008440 AT1G02230.1 43.846 130 66 5 28 153 4 130 2.17e-25 105
Msa0008440 AT4G01550.1 37.748 151 87 3 30 177 7 153 1.86e-24 104
Msa0008440 AT3G04420.2 39.416 137 78 3 28 161 4 138 2.60e-24 101
Msa0008440 AT3G04420.1 40.602 133 74 3 28 157 4 134 4.07e-24 101
Msa0008440 AT4G01520.1 33.696 184 114 4 28 207 5 184 5.48e-24 100
Msa0008440 AT5G22380.1 40.152 132 67 4 30 153 8 135 8.49e-24 98.6
Msa0008440 AT4G01540.4 35.669 157 93 4 30 182 7 159 1.30e-23 101
Msa0008440 AT4G01540.3 35.669 157 93 4 30 182 7 159 2.07e-23 100
Msa0008440 AT4G01540.2 35.669 157 93 4 30 182 7 159 2.61e-23 100
Msa0008440 AT4G01540.1 35.669 157 93 4 30 182 7 159 3.47e-23 100
Msa0008440 AT1G02250.1 38.462 130 73 4 28 153 4 130 1.27e-21 95.1
Msa0008440 AT3G10490.4 56.962 79 30 2 101 177 2 78 1.04e-20 92.4
Msa0008440 AT3G10490.3 56.962 79 30 2 101 177 2 78 1.04e-20 92.4
Msa0008440 AT1G02220.1 37.984 129 72 4 28 153 4 127 4.19e-20 91.3
Msa0008440 AT2G18060.2 34.266 143 89 3 106 246 2 141 6.25e-20 89.0
Msa0008440 AT2G43000.2 41.758 91 49 2 89 177 1 89 8.15e-19 84.0
Msa0008440 AT1G01010.1 37.594 133 72 5 30 153 6 136 8.27e-18 84.7
Msa0008440 AT3G04430.1 33.775 151 84 5 33 169 6 154 2.49e-16 77.0
Msa0008440 AT5G50820.1 32.192 146 72 6 27 162 17 145 4.66e-15 73.6
Msa0008440 AT5G14000.1 33.125 160 97 6 27 183 15 167 1.40e-14 72.4
Msa0008440 AT5G22290.2 45.238 84 35 3 107 190 2 74 4.13e-14 71.6
Msa0008440 AT5G14000.2 32.857 140 87 4 27 164 15 149 1.54e-13 68.2
Msa0008440 AT3G56530.1 30.612 147 98 3 23 167 48 192 4.40e-13 69.7
Msa0008440 AT5G56620.2 31.429 175 88 7 27 175 43 211 5.09e-12 67.0
Msa0008440 AT5G56620.3 31.429 175 88 7 27 175 43 211 5.38e-12 67.0
Msa0008440 AT5G56620.1 31.818 176 86 8 27 175 43 211 7.52e-12 66.6
Msa0008440 AT3G55210.1 27.647 170 105 5 26 182 10 174 2.08e-11 64.3

Find 100 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCACCATTTC+AGG 0.161758 1_1:+12123814 Msa0008440:CDS
CCAACAATGATGCAGCATTT+AGG 0.221902 1_1:+12123673 Msa0008440:CDS
CTAAGGGTGATGATGATAAA+TGG 0.225370 1_1:-12123789 None:intergenic
GTTGGTTCTTATACTGGATT+TGG 0.259797 1_1:-12122463 None:intergenic
TACCTTGTTGGTTCTTATAC+TGG 0.266381 1_1:-12122469 None:intergenic
GCTACTCATTTCCAGCTCTA+TGG 0.284860 1_1:+12123706 Msa0008440:CDS
CAACAATGATGCAGCATTTA+GGG 0.296732 1_1:+12123674 Msa0008440:CDS
TAGCAAAGAAAGGAAGGATT+TGG 0.310503 1_1:+12121435 Msa0008440:CDS
GCCATCAACTACTCATACTA+TGG 0.320155 1_1:+12123891 Msa0008440:CDS
GTGTGGATCTTGATCATTAC+TGG 0.322379 1_1:+12124073 Msa0008440:CDS
TCAGGGCTTAATTTGAATCT+TGG 0.354521 1_1:+12123832 Msa0008440:CDS
CAACAGTGTTACATCAGAAT+TGG 0.355460 1_1:+12122350 Msa0008440:CDS
GAGCAACAAACACTGGATAT+TGG 0.356961 1_1:+12122298 Msa0008440:CDS
AATAATAATAACTTAGGGTT+TGG 0.365351 1_1:+12123976 Msa0008440:CDS
GCAGAGAATAATAATAACTT+AGG 0.389630 1_1:+12123970 Msa0008440:CDS
TGCGAGCCATGGGAGCTTCC+AGG 0.393548 1_1:+12121613 Msa0008440:CDS
GTACAATATGCAGGGTACTA+TGG 0.400982 1_1:+12124044 Msa0008440:CDS
AATTATATAATATACCTTGT+TGG 0.426634 1_1:-12122481 None:intergenic
ATTCAAATTAAGCCCTGAAA+TGG 0.426887 1_1:-12123827 None:intergenic
GGTTGGTATGAAGAAAACTT+TGG 0.429083 1_1:+12122371 Msa0008440:CDS
AATAATAACTTAGGGTTTGG+TGG 0.433273 1_1:+12123979 Msa0008440:CDS
GACCAACTTCTAGATTGATA+TGG 0.439869 1_1:-12123621 None:intergenic
GTAAGATTTGAAGAAGAAGA+AGG 0.440782 1_1:-12123577 None:intergenic
CATTTATCATCATCACCCTT+AGG 0.446380 1_1:+12123790 Msa0008440:CDS
CTATTAGTTCTCACACCTGT+TGG 0.449944 1_1:-12122276 None:intergenic
AGTTGTTAGCAAAGAAAGGA+AGG 0.451453 1_1:+12121429 Msa0008440:CDS
CAAACCCTACTCATGGCAAT+AGG 0.453517 1_1:+12124022 Msa0008440:CDS
GGTGAATCCTTCTCCTCCTA+AGG 0.457239 1_1:-12123806 None:intergenic
TAAGGGTGATGATGATAAAT+GGG 0.459246 1_1:-12123788 None:intergenic
TTCTTATACTGGATTTGGAA+TGG 0.468387 1_1:-12122458 None:intergenic
TGGCAATAGGTACAATATGC+AGG 0.471195 1_1:+12124035 Msa0008440:CDS
GGGCTTAATTTGAATCTTGG+AGG 0.471334 1_1:+12123835 Msa0008440:CDS
AGAGTATTCCGCAAGAGTGC+AGG 0.472263 1_1:+12123541 Msa0008440:CDS
AGAAAGGAAGGATTTGGAAA+TGG 0.473442 1_1:+12121441 Msa0008440:CDS
TATATATGCAGCAGGATGAA+TGG 0.479522 1_1:+12123509 Msa0008440:intron
TACCATATCAATCTAGAAGT+TGG 0.481646 1_1:+12123619 Msa0008440:CDS
GCCATAGTATGAGTAGTTGA+TGG 0.484673 1_1:-12123892 None:intergenic
AAGAAGTTGTTAGCAAAGAA+AGG 0.487064 1_1:+12121425 Msa0008440:CDS
TATAGTTCCTTCCATAGAGC+TGG 0.487958 1_1:-12123717 None:intergenic
GATGACTTTGCTTACTTGCA+TGG 0.489341 1_1:-12121227 None:intergenic
CTAGAGGAGAGAAAACCAAC+TGG 0.491009 1_1:+12122415 Msa0008440:CDS
GGTAGGATGAAATCGAAATC+CGG 0.491316 1_1:-12121497 None:intergenic
AGAGATCGTAAATATCCAAC+AGG 0.491428 1_1:+12122261 Msa0008440:CDS
CCTAAATGCTGCATCATTGT+TGG 0.501547 1_1:-12123673 None:intergenic
ATATATGCAGCAGGATGAAT+GGG 0.505037 1_1:+12123510 Msa0008440:intron
ATTTATAGGGAAGGCCAAGA+TGG 0.507478 1_1:+12122209 Msa0008440:intron
ATCTCAACAAATGCGAGCCA+TGG 0.513090 1_1:+12121602 Msa0008440:CDS
ACTTCTAGATTGATATGGTA+AGG 0.513737 1_1:-12123616 None:intergenic
TGTACCTATTGCCATGAGTA+GGG 0.521891 1_1:-12124026 None:intergenic
CAGAGAATAATAATAACTTA+GGG 0.522455 1_1:+12123971 Msa0008440:CDS
CCAAGATGGGTACAAAAGAA+TGG 0.522857 1_1:+12122223 Msa0008440:CDS
GGAAGGAACACGTGAGAAAG+AGG 0.523705 1_1:+12121462 Msa0008440:CDS
AATAACTTAGGGTTTGGTGG+TGG 0.530200 1_1:+12123982 Msa0008440:CDS
GAAATCGAAATCCGGGAGGT+AGG 0.532076 1_1:-12121489 None:intergenic
TTGTACCTATTGCCATGAGT+AGG 0.535715 1_1:-12124027 None:intergenic
AAATGGGAATATTGATGCAT+TGG 0.541252 1_1:-12123772 None:intergenic
ACTAATAGAGCAACAAACAC+TGG 0.544961 1_1:+12122291 Msa0008440:CDS
AAATCGAAATCCGGGAGGTA+GGG 0.547523 1_1:-12121488 None:intergenic
TTCAGCTCCAACATGATGAC+AGG 0.548671 1_1:+12123922 Msa0008440:CDS
TGCTGCATCATTGTTGGTGG+TGG 0.549436 1_1:-12123667 None:intergenic
GAGAAGGATTCACCATTTCA+GGG 0.553123 1_1:+12123815 Msa0008440:CDS
TCTTTGCACCTGCACTCTTG+CGG 0.553400 1_1:-12123549 None:intergenic
TCATCACCCTTAGGAGGAGA+AGG 0.556810 1_1:+12123799 Msa0008440:CDS
AAATGCTGCATCATTGTTGG+TGG 0.560573 1_1:-12123670 None:intergenic
TAAGATTTGAAGAAGAAGAA+GGG 0.568739 1_1:-12123576 None:intergenic
ATTATTCTCTGCAGCAACAA+GGG 0.570178 1_1:-12123959 None:intergenic
ATTTGCACCTGTCATCATGT+TGG 0.570618 1_1:-12123929 None:intergenic
GTATGAGTAGTTGATGGCAT+TGG 0.570711 1_1:-12123886 None:intergenic
GTAGGATGAAATCGAAATCC+GGG 0.573405 1_1:-12121496 None:intergenic
TTTATAGGGAAGGCCAAGAT+GGG 0.574283 1_1:+12122210 Msa0008440:intron
AGGAAGGATTTGGAAATGGA+AGG 0.575195 1_1:+12121445 Msa0008440:CDS
AAATAAAGTGATCAGTAAGA+AGG 0.577405 1_1:-12124099 None:intergenic
TCTCAACAAATGCGAGCCAT+GGG 0.580584 1_1:+12121603 Msa0008440:CDS
AATCTCCTTGTCTTTCCCTG+TGG 0.581208 1_1:-12122325 None:intergenic
ACTGGATATTGGAAAACCAC+AGG 0.581954 1_1:+12122309 Msa0008440:CDS
AAAGAGGAAACCCTACCTCC+CGG 0.588423 1_1:+12121478 Msa0008440:CDS
CTCATTTCCAGCTCTATGGA+AGG 0.590822 1_1:+12123710 Msa0008440:CDS
TTATCATCATCACCCTTAGG+AGG 0.591927 1_1:+12123793 Msa0008440:CDS
TATTATTCTCTGCAGCAACA+AGG 0.597751 1_1:-12123960 None:intergenic
AATAATGCAAACCCTACTCA+TGG 0.598055 1_1:+12124015 Msa0008440:CDS
GGCATATTATTATTAAAGCT+AGG 0.598474 1_1:-12123646 None:intergenic
AGTGTTACATCAGAATTGGT+TGG 0.599286 1_1:+12122354 Msa0008440:CDS
GGAAGGAACTATATCAACAC+TGG 0.599703 1_1:+12123727 Msa0008440:CDS
GTGAATCCTTCTCCTCCTAA+GGG 0.600976 1_1:-12123805 None:intergenic
GTGATGAGTTCTTCATCGGT+AGG 0.602022 1_1:-12121514 None:intergenic
TACAAAGGTCGTGCTCCTAG+AGG 0.602672 1_1:+12122399 Msa0008440:CDS
GTAAGTGATGAGTTCTTCAT+CGG 0.604469 1_1:-12121518 None:intergenic
CAAAATAGTTTGTGAAGACG+TGG 0.607429 1_1:-12123860 None:intergenic
ATATTCATGCATGACCCAGT+TGG 0.607778 1_1:-12122430 None:intergenic
GGCAATAGGTACAATATGCA+GGG 0.608820 1_1:+12124036 Msa0008440:CDS
GGGTACTATGGACCATTGTG+TGG 0.616034 1_1:+12124056 Msa0008440:CDS
TAAAGTGATCAGTAAGAAGG+TGG 0.627141 1_1:-12124096 None:intergenic
CTGGATATTGGAAAACCACA+GGG 0.650427 1_1:+12122310 Msa0008440:CDS
ATATTATTATTAAAGCTAGG+AGG 0.657871 1_1:-12123643 None:intergenic
TATGCAGCAGGATGAATGGG+TGG 0.662923 1_1:+12123513 Msa0008440:intron
ATCCAGTATAAGAACCAACA+AGG 0.673356 1_1:+12122467 Msa0008440:CDS
GAAAACCACAGGGAAAGACA+AGG 0.680177 1_1:+12122320 Msa0008440:CDS
TAGAGGAGAGAAAACCAACT+GGG 0.682123 1_1:+12122416 Msa0008440:CDS
AATGATCAAGATCCACACAA+TGG 0.714365 1_1:-12124068 None:intergenic
GGATGAAATCGAAATCCGGG+AGG 0.762260 1_1:-12121493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAAACAAAAAACTA+GGG + chr1_1:12121801-12121820 Msa0008440:intron 10.0%
!! AGAAAAATTAAAATTAGTTA+TGG + chr1_1:12121897-12121916 Msa0008440:intron 10.0%
!!! TTTTATTTAATTATATAGTG+TGG + chr1_1:12122095-12122114 Msa0008440:intron 10.0%
!! ATGAAAAAAATTATGATAAT+AGG + chr1_1:12122553-12122572 Msa0008440:intron 10.0%
!! TGAAAAAAATTATGATAATA+GGG + chr1_1:12122554-12122573 Msa0008440:intron 10.0%
!!! AAAAAAAAGATTTGATTTTT+AGG + chr1_1:12122959-12122978 Msa0008440:intron 10.0%
!!! ACAAAAATTTAAACTTTTTA+TGG + chr1_1:12123182-12123201 Msa0008440:intron 10.0%
!!! CAAAAATTTAAACTTTTTAT+GGG + chr1_1:12123183-12123202 Msa0008440:intron 10.0%
!!! AAAAATTTAAACTTTTTATG+GGG + chr1_1:12123184-12123203 Msa0008440:intron 10.0%
!! TAATACTATATTTAAGAATA+AGG + chr1_1:12123209-12123228 Msa0008440:intron 10.0%
!! AATACTATATTTAAGAATAA+GGG + chr1_1:12123210-12123229 Msa0008440:intron 10.0%
!! GGTTAAGAAAATTAAATATA+GGG - chr1_1:12121307-12121326 None:intergenic 15.0%
!!! AATTTAAAAGCATGTATAAA+GGG - chr1_1:12121328-12121347 None:intergenic 15.0%
!!! AAATTTAAAAGCATGTATAA+AGG - chr1_1:12121329-12121348 None:intergenic 15.0%
!! TTCTTGATAAATGAAAAAAA+GGG - chr1_1:12121700-12121719 None:intergenic 15.0%
!!! ATATTTAGTATCGATATATA+TGG - chr1_1:12121734-12121753 None:intergenic 15.0%
!!! TTTTTTGTTTTTATAAAGCA+TGG - chr1_1:12121798-12121817 None:intergenic 15.0%
!! CTTTATAAAAACAAAAAACT+AGG + chr1_1:12121800-12121819 Msa0008440:intron 15.0%
!!! TAATTTTCTTTTACAAAATG+AGG - chr1_1:12122043-12122062 None:intergenic 15.0%
!! TAAAAGAAAATTAATATGTC+TGG + chr1_1:12122050-12122069 Msa0008440:intron 15.0%
!! AATTATATAATATACCTTGT+TGG - chr1_1:12122484-12122503 None:intergenic 15.0%
!! ACATTTAAAGATGTATAATA+GGG - chr1_1:12122586-12122605 None:intergenic 15.0%
!! AACATTTAAAGATGTATAAT+AGG - chr1_1:12122587-12122606 None:intergenic 15.0%
!!! TTGAAGAAATTTTGTATATA+GGG - chr1_1:12122776-12122795 None:intergenic 15.0%
!!! TTTACTTCAATTTTATAGTA+GGG - chr1_1:12122838-12122857 None:intergenic 15.0%
!!! ATTTACTTCAATTTTATAGT+AGG - chr1_1:12122839-12122858 None:intergenic 15.0%
!!! ATTTTAGTTTCTAAAACTTT+TGG + chr1_1:12122996-12123015 Msa0008440:intron 15.0%
!!! AAAGTTGAAGAATTTTTTTT+AGG + chr1_1:12123154-12123173 Msa0008440:intron 15.0%
!! ATACTATATTTAAGAATAAG+GGG + chr1_1:12123211-12123230 Msa0008440:intron 15.0%
!! GGGTTAAGAAAATTAAATAT+AGG - chr1_1:12121308-12121327 None:intergenic 20.0%
!!! TTCATACATAAAATTTTACC+TGG - chr1_1:12121634-12121653 None:intergenic 20.0%
!! GTTCTTGATAAATGAAAAAA+AGG - chr1_1:12121701-12121720 None:intergenic 20.0%
!! TTATGTAAAATTTATAGGGA+AGG + chr1_1:12122200-12122219 Msa0008440:intron 20.0%
!!! AAAACTTTGGTTTTTTACAA+AGG + chr1_1:12122384-12122403 Msa0008440:CDS 20.0%
!! TTATTCAGACTATTATAAGA+TGG - chr1_1:12122742-12122761 None:intergenic 20.0%
!!! GTTGAAGAAATTTTGTATAT+AGG - chr1_1:12122777-12122796 None:intergenic 20.0%
!!! TTGGTGACTAAAAATATTAT+AGG - chr1_1:12122808-12122827 None:intergenic 20.0%
!! TAATTCATTTCTTAAACTTG+TGG + chr1_1:12123042-12123061 Msa0008440:intron 20.0%
!! AATTCATTTCTTAAACTTGT+GGG + chr1_1:12123043-12123062 Msa0008440:intron 20.0%
!!! ATTTTTTTCCAATACTATGA+CGG - chr1_1:12123269-12123288 None:intergenic 20.0%
!!! TCTAAAATTTGTATGCTTTT+TGG - chr1_1:12123310-12123329 None:intergenic 20.0%
!! ATATTATTATTAAAGCTAGG+AGG - chr1_1:12123646-12123665 None:intergenic 20.0%
!! CAGAGAATAATAATAACTTA+GGG + chr1_1:12123971-12123990 Msa0008440:CDS 20.0%
!! AATAATAATAACTTAGGGTT+TGG + chr1_1:12123976-12123995 Msa0008440:CDS 20.0%
!! AATTTTACATGCAAAGCAAT+AGG + chr1_1:12121571-12121590 Msa0008440:CDS 25.0%
!! TTTTATAAAGCATGGATGAA+AGG - chr1_1:12121790-12121809 None:intergenic 25.0%
! AAGATGAAAGTCATATATTG+TGG - chr1_1:12121960-12121979 None:intergenic 25.0%
! TTTATAGTAGGGATTCAAAT+TGG - chr1_1:12122827-12122846 None:intergenic 25.0%
! TAGAGTATATTTGCAAAGTT+TGG - chr1_1:12122883-12122902 None:intergenic 25.0%
!!! TTGATTTTTAGGTCTAAGTT+TGG + chr1_1:12122970-12122989 Msa0008440:intron 25.0%
!!! TGATTTTTAGGTCTAAGTTT+GGG + chr1_1:12122971-12122990 Msa0008440:intron 25.0%
!!! AATTTGTATGCTTTTTGGAT+TGG - chr1_1:12123305-12123324 None:intergenic 25.0%
!!! TAGTTTTGATGCATTGTTAT+TGG + chr1_1:12123368-12123387 Msa0008440:intron 25.0%
! TAAGATTTGAAGAAGAAGAA+GGG - chr1_1:12123579-12123598 None:intergenic 25.0%
! GGCATATTATTATTAAAGCT+AGG - chr1_1:12123649-12123668 None:intergenic 25.0%
! GCAGAGAATAATAATAACTT+AGG + chr1_1:12123970-12123989 Msa0008440:CDS 25.0%
!! TTTTTGTGTGTTATTCCAGA+AGG + chr1_1:12121399-12121418 Msa0008440:intron 30.0%
AAGAAGTTGTTAGCAAAGAA+AGG + chr1_1:12121425-12121444 Msa0008440:CDS 30.0%
CTTTCATCTTTCTTGTGATA+TGG + chr1_1:12121970-12121989 Msa0008440:intron 30.0%
TCTTTCTTGTGATATGGTTA+AGG + chr1_1:12121976-12121995 Msa0008440:intron 30.0%
TTCTTATACTGGATTTGGAA+TGG - chr1_1:12122461-12122480 None:intergenic 30.0%
TAGCATTCTTCAATACAACA+TGG - chr1_1:12122615-12122634 None:intergenic 30.0%
GTAAGATTTGAAGAAGAAGA+AGG - chr1_1:12123580-12123599 None:intergenic 30.0%
ACTTCTAGATTGATATGGTA+AGG - chr1_1:12123619-12123638 None:intergenic 30.0%
TACCATATCAATCTAGAAGT+TGG + chr1_1:12123619-12123638 Msa0008440:CDS 30.0%
AAATGGGAATATTGATGCAT+TGG - chr1_1:12123775-12123794 None:intergenic 30.0%
! TAAGGGTGATGATGATAAAT+GGG - chr1_1:12123791-12123810 None:intergenic 30.0%
ATTCAAATTAAGCCCTGAAA+TGG - chr1_1:12123830-12123849 None:intergenic 30.0%
AATAATAACTTAGGGTTTGG+TGG + chr1_1:12123979-12123998 Msa0008440:CDS 30.0%
TAACAACTTCTTTGTCCTTC+TGG - chr1_1:12121417-12121436 None:intergenic 35.0%
AGTTGTTAGCAAAGAAAGGA+AGG + chr1_1:12121429-12121448 Msa0008440:CDS 35.0%
TAGCAAAGAAAGGAAGGATT+TGG + chr1_1:12121435-12121454 Msa0008440:CDS 35.0%
AGAAAGGAAGGATTTGGAAA+TGG + chr1_1:12121441-12121460 Msa0008440:CDS 35.0%
GTAAGTGATGAGTTCTTCAT+CGG - chr1_1:12121521-12121540 None:intergenic 35.0%
AGAGATCGTAAATATCCAAC+AGG + chr1_1:12122261-12122280 Msa0008440:CDS 35.0%
ACTAATAGAGCAACAAACAC+TGG + chr1_1:12122291-12122310 Msa0008440:CDS 35.0%
CAACAGTGTTACATCAGAAT+TGG + chr1_1:12122350-12122369 Msa0008440:CDS 35.0%
AGTGTTACATCAGAATTGGT+TGG + chr1_1:12122354-12122373 Msa0008440:CDS 35.0%
! GGTTGGTATGAAGAAAACTT+TGG + chr1_1:12122371-12122390 Msa0008440:CDS 35.0%
! GTTGGTTCTTATACTGGATT+TGG - chr1_1:12122466-12122485 None:intergenic 35.0%
ATCCAGTATAAGAACCAACA+AGG + chr1_1:12122467-12122486 Msa0008440:CDS 35.0%
!! TACCTTGTTGGTTCTTATAC+TGG - chr1_1:12122472-12122491 None:intergenic 35.0%
CTAGCATTCACTCTTCTATT+TGG + chr1_1:12122661-12122680 Msa0008440:intron 35.0%
TAAATAGACCTCACACAAAG+TGG - chr1_1:12122708-12122727 None:intergenic 35.0%
ATGTCGAATATATATGCAGC+AGG + chr1_1:12123501-12123520 Msa0008440:intron 35.0%
TATATATGCAGCAGGATGAA+TGG + chr1_1:12123509-12123528 Msa0008440:intron 35.0%
ATATATGCAGCAGGATGAAT+GGG + chr1_1:12123510-12123529 Msa0008440:intron 35.0%
GACCAACTTCTAGATTGATA+TGG - chr1_1:12123624-12123643 None:intergenic 35.0%
CAACAATGATGCAGCATTTA+GGG + chr1_1:12123674-12123693 Msa0008440:CDS 35.0%
! CTAAGGGTGATGATGATAAA+TGG - chr1_1:12123792-12123811 None:intergenic 35.0%
CATTTATCATCATCACCCTT+AGG + chr1_1:12123790-12123809 Msa0008440:CDS 35.0%
! TCAGGGCTTAATTTGAATCT+TGG + chr1_1:12123832-12123851 Msa0008440:CDS 35.0%
! CAAAATAGTTTGTGAAGACG+TGG - chr1_1:12123863-12123882 None:intergenic 35.0%
! CGTCTTCACAAACTATTTTG+AGG + chr1_1:12123863-12123882 Msa0008440:CDS 35.0%
ATTATTCTCTGCAGCAACAA+GGG - chr1_1:12123962-12123981 None:intergenic 35.0%
TATTATTCTCTGCAGCAACA+AGG - chr1_1:12123963-12123982 None:intergenic 35.0%
AATAATGCAAACCCTACTCA+TGG + chr1_1:12124015-12124034 Msa0008440:CDS 35.0%
AATGATCAAGATCCACACAA+TGG - chr1_1:12124071-12124090 None:intergenic 35.0%
AGGAAGGATTTGGAAATGGA+AGG + chr1_1:12121445-12121464 Msa0008440:CDS 40.0%
GTAGGATGAAATCGAAATCC+GGG - chr1_1:12121499-12121518 None:intergenic 40.0%
GGTAGGATGAAATCGAAATC+CGG - chr1_1:12121500-12121519 None:intergenic 40.0%
ATTTATAGGGAAGGCCAAGA+TGG + chr1_1:12122209-12122228 Msa0008440:intron 40.0%
TTTATAGGGAAGGCCAAGAT+GGG + chr1_1:12122210-12122229 Msa0008440:intron 40.0%
! CCATTCTTTTGTACCCATCT+TGG - chr1_1:12122226-12122245 None:intergenic 40.0%
CCAAGATGGGTACAAAAGAA+TGG + chr1_1:12122223-12122242 Msa0008440:CDS 40.0%
! CTATTAGTTCTCACACCTGT+TGG - chr1_1:12122279-12122298 None:intergenic 40.0%
GAGCAACAAACACTGGATAT+TGG + chr1_1:12122298-12122317 Msa0008440:CDS 40.0%
ACTGGATATTGGAAAACCAC+AGG + chr1_1:12122309-12122328 Msa0008440:CDS 40.0%
CTGGATATTGGAAAACCACA+GGG + chr1_1:12122310-12122329 Msa0008440:CDS 40.0%
TAGAGGAGAGAAAACCAACT+GGG + chr1_1:12122416-12122435 Msa0008440:CDS 40.0%
ATATTCATGCATGACCCAGT+TGG - chr1_1:12122433-12122452 None:intergenic 40.0%
AGTCACAACCGTCATAGTAT+TGG + chr1_1:12123258-12123277 Msa0008440:intron 40.0%
CATGTATGTGTGTGTGTTTC+TGG - chr1_1:12123451-12123470 None:intergenic 40.0%
AAATGCTGCATCATTGTTGG+TGG - chr1_1:12123673-12123692 None:intergenic 40.0%
CCTAAATGCTGCATCATTGT+TGG - chr1_1:12123676-12123695 None:intergenic 40.0%
CCAACAATGATGCAGCATTT+AGG + chr1_1:12123673-12123692 Msa0008440:CDS 40.0%
TATAGTTCCTTCCATAGAGC+TGG - chr1_1:12123720-12123739 None:intergenic 40.0%
GGAAGGAACTATATCAACAC+TGG + chr1_1:12123727-12123746 Msa0008440:CDS 40.0%
!!! ACTGGAGAAGTTTTAAGAGC+TGG + chr1_1:12123745-12123764 Msa0008440:CDS 40.0%
TTATCATCATCACCCTTAGG+AGG + chr1_1:12123793-12123812 Msa0008440:CDS 40.0%
GAGAAGGATTCACCATTTCA+GGG + chr1_1:12123815-12123834 Msa0008440:CDS 40.0%
! GGGCTTAATTTGAATCTTGG+AGG + chr1_1:12123835-12123854 Msa0008440:CDS 40.0%
!! GTATGAGTAGTTGATGGCAT+TGG - chr1_1:12123889-12123908 None:intergenic 40.0%
GCCATCAACTACTCATACTA+TGG + chr1_1:12123891-12123910 Msa0008440:CDS 40.0%
GCCATAGTATGAGTAGTTGA+TGG - chr1_1:12123895-12123914 None:intergenic 40.0%
ATTTGCACCTGTCATCATGT+TGG - chr1_1:12123932-12123951 None:intergenic 40.0%
!! AATAACTTAGGGTTTGGTGG+TGG + chr1_1:12123982-12124001 Msa0008440:CDS 40.0%
TGTACCTATTGCCATGAGTA+GGG - chr1_1:12124029-12124048 None:intergenic 40.0%
TTGTACCTATTGCCATGAGT+AGG - chr1_1:12124030-12124049 None:intergenic 40.0%
TGGCAATAGGTACAATATGC+AGG + chr1_1:12124035-12124054 Msa0008440:CDS 40.0%
GGCAATAGGTACAATATGCA+GGG + chr1_1:12124036-12124055 Msa0008440:CDS 40.0%
! GTACAATATGCAGGGTACTA+TGG + chr1_1:12124044-12124063 Msa0008440:CDS 40.0%
GTGTGGATCTTGATCATTAC+TGG + chr1_1:12124073-12124092 Msa0008440:CDS 40.0%
AAATCGAAATCCGGGAGGTA+GGG - chr1_1:12121491-12121510 None:intergenic 45.0%
GTGATGAGTTCTTCATCGGT+AGG - chr1_1:12121517-12121536 None:intergenic 45.0%
ATCTCAACAAATGCGAGCCA+TGG + chr1_1:12121602-12121621 Msa0008440:CDS 45.0%
TCTCAACAAATGCGAGCCAT+GGG + chr1_1:12121603-12121622 Msa0008440:CDS 45.0%
! ATTTTACCTGGAAGCTCCCA+TGG - chr1_1:12121622-12121641 None:intergenic 45.0%
GAAAACCACAGGGAAAGACA+AGG + chr1_1:12122320-12122339 Msa0008440:CDS 45.0%
AATCTCCTTGTCTTTCCCTG+TGG - chr1_1:12122328-12122347 None:intergenic 45.0%
!!! CAGTTGGTTTTCTCTCCTCT+AGG - chr1_1:12122417-12122436 None:intergenic 45.0%
CTAGAGGAGAGAAAACCAAC+TGG + chr1_1:12122415-12122434 Msa0008440:CDS 45.0%
TAGACCTCACACAAAGTGGT+GGG - chr1_1:12122704-12122723 None:intergenic 45.0%
ATAGACCTCACACAAAGTGG+TGG - chr1_1:12122705-12122724 None:intergenic 45.0%
GCTACTCATTTCCAGCTCTA+TGG + chr1_1:12123706-12123725 Msa0008440:CDS 45.0%
CTCATTTCCAGCTCTATGGA+AGG + chr1_1:12123710-12123729 Msa0008440:CDS 45.0%
GTGAATCCTTCTCCTCCTAA+GGG - chr1_1:12123808-12123827 None:intergenic 45.0%
GGAGAAGGATTCACCATTTC+AGG + chr1_1:12123814-12123833 Msa0008440:CDS 45.0%
TTCAGCTCCAACATGATGAC+AGG + chr1_1:12123922-12123941 Msa0008440:CDS 45.0%
CAAACCCTACTCATGGCAAT+AGG + chr1_1:12124022-12124041 Msa0008440:CDS 45.0%
!! TTTAATTATGTAAAATTTAT+AGG + chr1_1:12122195-12122214 Msa0008440:intron 5.0%
!! TTAATTATGTAAAATTTATA+GGG + chr1_1:12122196-12122215 Msa0008440:intron 5.0%
!!! GAATTTTTTAATATTTTTTT+AGG - chr1_1:12123097-12123116 None:intergenic 5.0%
GGAAGGAACACGTGAGAAAG+AGG + chr1_1:12121462-12121481 Msa0008440:CDS 50.0%
AAAGAGGAAACCCTACCTCC+CGG + chr1_1:12121478-12121497 Msa0008440:CDS 50.0%
GAAATCGAAATCCGGGAGGT+AGG - chr1_1:12121492-12121511 None:intergenic 50.0%
GGATGAAATCGAAATCCGGG+AGG - chr1_1:12121496-12121515 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTAG+AGG + chr1_1:12122399-12122418 Msa0008440:CDS 50.0%
ATGTCCCACCACTTTGTGTG+AGG + chr1_1:12122697-12122716 Msa0008440:intron 50.0%
TATGCAGCAGGATGAATGGG+TGG + chr1_1:12123513-12123532 Msa0008440:intron 50.0%
! AGAGTATTCCGCAAGAGTGC+AGG + chr1_1:12123541-12123560 Msa0008440:CDS 50.0%
TCTTTGCACCTGCACTCTTG+CGG - chr1_1:12123552-12123571 None:intergenic 50.0%
! TGCTGCATCATTGTTGGTGG+TGG - chr1_1:12123670-12123689 None:intergenic 50.0%
TCATCACCCTTAGGAGGAGA+AGG + chr1_1:12123799-12123818 Msa0008440:CDS 50.0%
GGTGAATCCTTCTCCTCCTA+AGG - chr1_1:12123809-12123828 None:intergenic 50.0%
GGGTACTATGGACCATTGTG+TGG + chr1_1:12124056-12124075 Msa0008440:CDS 50.0%
TGCGAGCCATGGGAGCTTCC+AGG + chr1_1:12121613-12121632 Msa0008440:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12121229 12124110 12121229 ID=Msa0008440;Name=Msa0008440
chr1_1 mRNA 12121229 12124110 12121229 ID=Msa0008440-mRNA-1;Parent=Msa0008440;Name=Msa0008440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.33|0|0.75|1|1|4|0|361
chr1_1 exon 12121229 12121234 12121229 ID=Msa0008440-mRNA-1:exon:4560;Parent=Msa0008440-mRNA-1
chr1_1 exon 12121418 12121634 12121418 ID=Msa0008440-mRNA-1:exon:4561;Parent=Msa0008440-mRNA-1
chr1_1 exon 12122217 12122488 12122217 ID=Msa0008440-mRNA-1:exon:4562;Parent=Msa0008440-mRNA-1
chr1_1 exon 12123520 12124110 12123520 ID=Msa0008440-mRNA-1:exon:4563;Parent=Msa0008440-mRNA-1
chr1_1 CDS 12121229 12121234 12121229 ID=Msa0008440-mRNA-1:cds;Parent=Msa0008440-mRNA-1
chr1_1 CDS 12121418 12121634 12121418 ID=Msa0008440-mRNA-1:cds;Parent=Msa0008440-mRNA-1
chr1_1 CDS 12122217 12122488 12122217 ID=Msa0008440-mRNA-1:cds;Parent=Msa0008440-mRNA-1
chr1_1 CDS 12123520 12124110 12123520 ID=Msa0008440-mRNA-1:cds;Parent=Msa0008440-mRNA-1
Gene Sequence

>Msa0008440

ATGCAAAAGGACAAAGAAGTTGTTAGCAAAGAAAGGAAGGATTTGGAAATGGAAGGAACACGTGAGAAAGAGGAAACCCTACCTCCCGGATTTCGATTTCATCCTACCGATGAAGAACTCATCACTTACTATCTTGTAAGCAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGGAAGGCCAAGATGGGTACAAAAGAATGGTATTTCTTCAGTCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAAACTTTGGTTTTTTACAAAGGTCGTGCTCCTAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTATCCATTCCAAATCCAGTATAAGAACCAACAAGCAGGATGAATGGGTGGTAAGCAGAGTATTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCTTCTTCAAATCTTACAAGAGCAGTCATGAATCCTTACCATATCAATCTAGAAGTTGGTCCTCCTAGCTTTAATAATAATATGCCACCACCAACAATGATGCAGCATTTAGGGCTAGATTCTGCTACTCATTTCCAGCTCTATGGAAGGAACTATATCAACACTGGAGAAGTTTTAAGAGCTGGTGTACCAATGCATCAATATTCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGATCCACGTCTTCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAGCTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTACTCATGGCAATAGGTACAATATGCAGGGTACTATGGACCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA
Protein sequence

>Msa0008440

MQKDKEVVSKERKDLEMEGTREKEETLPPGFRFHPTDEELITYYLVSKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSSNLTRAVMNPYHINLEVGPPSFNNNMPPPTMMQHLGLDSATHFQLYGRNYINTGEVLRAGVPMHQYSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFSSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPTHGNRYNMQGTMDHCVDLDHYWPPSY*