AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060790 MtrunA17_Chr1g0160761 72.385 239 54 5 1 232 1 234 1.48e-107 325
Msa0060790 MtrunA17_Chr1g0160711 75.000 228 49 6 21 243 17 241 1.66e-107 324
Msa0060790 MtrunA17_Chr1g0160721 62.295 244 79 5 1 242 12 244 3.46e-88 275
Msa0060790 MtrunA17_Chr1g0160661 59.016 244 87 5 1 242 27 259 1.76e-84 260
Msa0060790 MtrunA17_Chr1g0160561 54.331 254 94 8 2 241 7 252 3.92e-75 241
Msa0060790 MtrunA17_Chr1g0160701 59.402 234 72 11 17 238 32 254 1.32e-69 226
Msa0060790 MtrunA17_Chr1g0157791 34.783 253 132 11 7 237 6 247 4.66e-29 115
Msa0060790 MtrunA17_Chr1g0158061 35.000 220 121 9 28 234 29 239 1.50e-28 110
Msa0060790 MtrunA17_Chr1g0157961 35.268 224 124 8 24 234 33 248 3.18e-27 107
Msa0060790 MtrunA17_Chr1g0157991 35.526 228 122 8 24 234 28 247 7.67e-27 109
Msa0060790 MtrunA17_Chr1g0158151 34.496 258 135 13 1 234 1 248 1.33e-26 108
Msa0060790 MtrunA17_Chr1g0158191 33.852 257 121 14 10 233 4 244 1.95e-26 108
Msa0060790 MtrunA17_Chr3g0088331 33.628 226 116 9 24 234 36 242 2.79e-25 101
Msa0060790 MtrunA17_Chr1g0158411 32.287 223 120 8 26 234 46 251 1.95e-23 99.4
Msa0060790 MtrunA17_Chr1g0158041 33.040 227 125 8 26 234 28 245 1.90e-22 96.7
Msa0060790 MtrunA17_Chr1g0157881 29.861 288 129 12 8 234 34 309 3.74e-22 95.9
Msa0060790 MtrunA17_Chr1g0158761 32.114 246 127 11 1 234 1 218 7.80e-22 94.7
Msa0060790 MtrunA17_Chr6g0467711 32.812 256 128 13 3 234 12 247 1.16e-21 94.4
Msa0060790 MtrunA17_Chr1g0158461 29.104 268 146 11 1 234 17 274 1.64e-21 91.7
Msa0060790 MtrunA17_Chr1g0158731 29.960 247 144 10 4 234 8 241 4.25e-21 90.5
Msa0060790 MtrunA17_Chr1g0158541 32.794 247 137 11 5 234 16 250 2.01e-19 87.8
Msa0060790 MtrunA17_Chr1g0157861 27.645 293 134 14 26 257 37 312 5.22e-19 86.7
Msa0060790 MtrunA17_Chr1g0158331 29.434 265 142 13 1 234 17 267 5.89e-19 85.1
Msa0060790 MtrunA17_Chr1g0158661 28.980 245 136 9 7 232 17 242 2.67e-18 84.3
Msa0060790 MtrunA17_Chr1g0157911 30.435 230 124 11 27 234 35 250 5.39e-18 83.6
Msa0060790 MtrunA17_Chr1g0158631 28.623 276 142 13 7 254 17 265 9.95e-18 82.8
Msa0060790 MtrunA17_Chr1g0158121 48.148 81 36 2 24 103 29 104 4.35e-15 70.5
Msa0060790 MtrunA17_Chr1g0158301 28.800 250 145 11 1 234 16 248 1.08e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCTCCTTATTATTCTTT+AGG 0.151819 1_2:-18672196 Msa0060790:CDS
TCCCTCCTTATTATTCTTTA+GGG 0.210688 1_2:-18672195 Msa0060790:CDS
CATTATTGTCCTCACATAAT+AGG 0.236387 1_2:+18672335 None:intergenic
CAACTTCACCATACGACTAT+TGG 0.252740 1_2:-18672245 Msa0060790:CDS
CTCTTGTCACCACATTCTTC+TGG 0.284196 1_2:+18672364 None:intergenic
TTTATGGATTTGAACTTTCA+TGG 0.314825 1_2:-18671850 Msa0060790:CDS
CTCAATAGTCTTTGTAATGA+TGG 0.335428 1_2:-18671827 Msa0060790:CDS
TAGAGCCCTAAAGAATAATA+AGG 0.353798 1_2:+18672190 None:intergenic
TCTCTTTCAGATTTGGGACT+TGG 0.355277 1_2:-18671965 Msa0060790:CDS
TTTAGCATGTCTTGAATTAA+GGG 0.366212 1_2:+18668581 None:intergenic
ATGTTCTTGCAGATGACCAC+TGG 0.375087 1_2:-18668650 Msa0060790:intron
CAGATTTGGGACTTGGAGAC+GGG 0.442912 1_2:-18671958 Msa0060790:CDS
ACTTGGAGACGGGTGTCATA+TGG 0.443107 1_2:-18671948 Msa0060790:CDS
TTTCGTATCCATTAAAAGCT+AGG 0.462412 1_2:+18672134 None:intergenic
TAACAGCACGACAAGGGTTA+AGG 0.463192 1_2:+18672501 None:intergenic
ACATCATGGCCTCTTGAAGA+TGG 0.468797 1_2:-18671911 Msa0060790:CDS
GAGAATTCTTTCTATGTTGG+TGG 0.469005 1_2:-18671998 Msa0060790:CDS
TACGAGAATTCTTTCTATGT+TGG 0.482804 1_2:-18672001 Msa0060790:CDS
TCAGATTTGGGACTTGGAGA+CGG 0.489585 1_2:-18671959 Msa0060790:CDS
AGGGCTTACATATGAAAGCC+GGG 0.509438 1_2:+18668610 None:intergenic
TATGAAAGCCGGGGAAGGTA+GGG 0.509508 1_2:+18668620 None:intergenic
ATATGAAAGCCGGGGAAGGT+AGG 0.518798 1_2:+18668619 None:intergenic
GTATCCATTAAAAGCTAGGT+AGG 0.522243 1_2:+18672138 None:intergenic
CGGTCGGAATATATTGATGA+AGG 0.526826 1_2:-18672058 Msa0060790:CDS
TGTTCTTGCAGATGACCACT+GGG 0.531694 1_2:-18668649 Msa0060790:intron
TTCTACAGACATGCGTCGAA+TGG 0.543277 1_2:-18671876 Msa0060790:CDS
GAGGGCTTACATATGAAAGC+CGG 0.545576 1_2:+18668609 None:intergenic
TAAAGAATAATAAGGAGGGA+TGG 0.555369 1_2:+18672198 None:intergenic
AATCTATGTATCTCACATCA+TGG 0.571651 1_2:-18671925 Msa0060790:CDS
GCCCTAAAGAATAATAAGGA+GGG 0.574069 1_2:+18672194 None:intergenic
ATTGTAATCCAATAGTCGTA+TGG 0.577306 1_2:+18672237 None:intergenic
TTCTCGTACAACAAAGTGCA+TGG 0.590113 1_2:-18672466 Msa0060790:CDS
AACAAGAGTCATGTTCAAGA+AGG 0.596613 1_2:-18672435 Msa0060790:CDS
ATATTGTTTCCATCTTCAAG+AGG 0.599725 1_2:+18671902 None:intergenic
AAGAGTCATGTTCAAGAAGG+TGG 0.600098 1_2:-18672432 Msa0060790:CDS
ATTAAAAGCTAGGTAGGGTG+AGG 0.606952 1_2:+18672144 None:intergenic
TCTTGAATTAAGGGAATGTG+AGG 0.610701 1_2:+18668590 None:intergenic
TTACATATGAAAGCCGGGGA+AGG 0.620719 1_2:+18668615 None:intergenic
CAGAAGAATGTGGTGACAAG+AGG 0.621774 1_2:-18672363 Msa0060790:CDS
AGCCCTAAAGAATAATAAGG+AGG 0.622034 1_2:+18672193 None:intergenic
TATCCATTAAAAGCTAGGTA+GGG 0.625375 1_2:+18672139 None:intergenic
GTATTAGTAACAGCACGACA+AGG 0.628217 1_2:+18672494 None:intergenic
TCGGAATATATTGATGAAGG+TGG 0.639500 1_2:-18672055 Msa0060790:CDS
TATTAGTAACAGCACGACAA+GGG 0.651789 1_2:+18672495 None:intergenic
CTTGAATTAAGGGAATGTGA+GGG 0.664266 1_2:+18668591 None:intergenic
TATGAATTTGAAGAACACCA+TGG 0.674399 1_2:-18672298 Msa0060790:CDS
GAGGTACAACCTATTATGTG+AGG 0.678478 1_2:-18672344 Msa0060790:CDS
TCATGTTCAAGAAGGTGGTG+CGG 0.678993 1_2:-18672427 Msa0060790:CDS
AAAGACAGTCCAGAAGAATG+TGG 0.689791 1_2:-18672373 Msa0060790:CDS
GGGCTTACATATGAAAGCCG+GGG 0.696923 1_2:+18668611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATATTTATATTAT+GGG - chr1_2:18669363-18669382 Msa0060790:intron 0.0%
!! AAAAAAATAAAAATAAAAAT+AGG + chr1_2:18670464-18670483 None:intergenic 0.0%
!! TTTCCAAATAAATTATATTT+GGG - chr1_2:18669793-18669812 Msa0060790:intron 10.0%
!! CATTAAATTTAAAAGTAAAA+GGG + chr1_2:18672035-18672054 None:intergenic 10.0%
!! GTTTCCAAATAAATTATATT+TGG - chr1_2:18669792-18669811 Msa0060790:intron 15.0%
!! TTCCAAATAAATTATATTTG+GGG - chr1_2:18669794-18669813 Msa0060790:intron 15.0%
!!! AGTTACTTGTTTTTTTTTTT+GGG + chr1_2:18669839-18669858 None:intergenic 15.0%
!! AATTTACTTAACTCATTATT+GGG + chr1_2:18670348-18670367 None:intergenic 15.0%
!! TAATTTACTTAACTCATTAT+TGG + chr1_2:18670349-18670368 None:intergenic 15.0%
!!! TAAGAATCATAAATTTTCTA+TGG - chr1_2:18670550-18670569 Msa0060790:intron 15.0%
!!! ATGATTTATGAAATTTTGAA+TGG - chr1_2:18670580-18670599 Msa0060790:intron 15.0%
!! TAAATAAATTCAAAAATCCA+TGG - chr1_2:18670676-18670695 Msa0060790:intron 15.0%
!! AAATAAATTCAAAAATCCAT+GGG - chr1_2:18670677-18670696 Msa0060790:intron 15.0%
!! AAATGAAACTTCAAATATTT+CGG - chr1_2:18671534-18671553 Msa0060790:intron 15.0%
!!! TGTTACATTTATTTAGTTTT+TGG - chr1_2:18671848-18671867 Msa0060790:CDS 15.0%
!! GCATTAAATTTAAAAGTAAA+AGG + chr1_2:18672036-18672055 None:intergenic 15.0%
!! GTAAATAAGAGAAAAATTAA+GGG + chr1_2:18672152-18672171 None:intergenic 15.0%
!! TATATCCATTGTAAAAAAAT+TGG - chr1_2:18672377-18672396 Msa0060790:CDS 15.0%
!!! ATTGTACATAATATTTTCCA+TGG + chr1_2:18668802-18668821 None:intergenic 20.0%
!!! CTCTATTTGTTTTTTTTGAT+GGG + chr1_2:18669590-18669609 None:intergenic 20.0%
!!! ACTCTATTTGTTTTTTTTGA+TGG + chr1_2:18669591-18669610 None:intergenic 20.0%
!! TACCCCAAATATAATTTATT+TGG + chr1_2:18669799-18669818 None:intergenic 20.0%
!!! GAGTTACTTGTTTTTTTTTT+TGG + chr1_2:18669840-18669859 None:intergenic 20.0%
!! ACATCATAAAACATATTCTA+TGG - chr1_2:18670521-18670540 Msa0060790:intron 20.0%
!!! TGTTTAAAAGTTGAAGTTTT+TGG - chr1_2:18670615-18670634 Msa0060790:intron 20.0%
!!! ATATCATGTGTGTTTTTTTT+TGG + chr1_2:18671045-18671064 None:intergenic 20.0%
!! AAAAAAAAACACACATGATA+TGG - chr1_2:18671044-18671063 Msa0060790:intron 20.0%
!! TTCAATTTGAAGAGATTTAA+GGG - chr1_2:18671087-18671106 Msa0060790:intron 20.0%
!!! TCATGTTTTTAAGGTATTTT+AGG + chr1_2:18671380-18671399 None:intergenic 20.0%
!! CTTAAAAACATGATATATGA+CGG - chr1_2:18671387-18671406 Msa0060790:intron 20.0%
!! AATTTGTATTGTATCAATGT+AGG + chr1_2:18671703-18671722 None:intergenic 20.0%
!!! GAGCATGTATTTTTATATTT+GGG + chr1_2:18671789-18671808 None:intergenic 20.0%
!!! TGAGCATGTATTTTTATATT+TGG + chr1_2:18671790-18671809 None:intergenic 20.0%
!!! GAAGAAATTGAGATATTTTA+AGG - chr1_2:18671879-18671898 Msa0060790:CDS 20.0%
!!! AGTATCTAGTTTAGTAATTT+TGG + chr1_2:18671966-18671985 None:intergenic 20.0%
!! TACTAAACTAGATACTAAAA+TGG - chr1_2:18671970-18671989 Msa0060790:CDS 20.0%
!! TAGATACTAAAATGGATAAA+GGG - chr1_2:18671978-18671997 Msa0060790:CDS 20.0%
!! GGTAAATAAGAGAAAAATTA+AGG + chr1_2:18672153-18672172 None:intergenic 20.0%
!! TTCTATTACCATTTAGAAAT+TGG - chr1_2:18672285-18672304 Msa0060790:CDS 20.0%
!!! AACTACCAATTTTTTTACAA+TGG + chr1_2:18672385-18672404 None:intergenic 20.0%
! TATATGTGAGCTGTAAAAAT+CGG - chr1_2:18669002-18669021 Msa0060790:intron 25.0%
! CAAAAATCTCTTTCAGATTT+GGG - chr1_2:18669109-18669128 Msa0060790:intron 25.0%
! TTTATGGATTTGAACTTTCA+TGG - chr1_2:18669230-18669249 Msa0060790:intron 25.0%
! GATATAATAGTACAAGAAGT+GGG - chr1_2:18669636-18669655 Msa0060790:intron 25.0%
!!! TTGTCAAAATGGTCTTATTT+AGG + chr1_2:18669683-18669702 None:intergenic 25.0%
! GTTATGTATGTTTGTCAAAA+TGG + chr1_2:18669694-18669713 None:intergenic 25.0%
! TTTGACTACCCATTATTATA+TGG - chr1_2:18670277-18670296 Msa0060790:intron 25.0%
! TACCCATTATTATATGGATA+TGG - chr1_2:18670283-18670302 Msa0060790:intron 25.0%
! GTCCATATCCATATAATAAT+GGG + chr1_2:18670288-18670307 None:intergenic 25.0%
! TGTCCATATCCATATAATAA+TGG + chr1_2:18670289-18670308 None:intergenic 25.0%
! TTATTATATGGATATGGACA+TGG - chr1_2:18670289-18670308 Msa0060790:intron 25.0%
! TAAAGTTGTTACCTTATTGA+AGG - chr1_2:18670402-18670421 Msa0060790:intron 25.0%
! ATTAATGAGAAATCTTAGGT+GGG + chr1_2:18670439-18670458 None:intergenic 25.0%
! TATTAATGAGAAATCTTAGG+TGG + chr1_2:18670440-18670459 None:intergenic 25.0%
! GGTTATTAATGAGAAATCTT+AGG + chr1_2:18670443-18670462 None:intergenic 25.0%
!!! TAAAAGTTGAAGTTTTTGGT+AGG - chr1_2:18670619-18670638 Msa0060790:intron 25.0%
!!! TGTGTTTTTTTTTGGTTTTG+CGG + chr1_2:18671037-18671056 None:intergenic 25.0%
! CTTCAATTTGAAGAGATTTA+AGG - chr1_2:18671086-18671105 Msa0060790:intron 25.0%
!! TCAAAGTTATCACCTTTTAT+TGG + chr1_2:18671140-18671159 None:intergenic 25.0%
! ATAAAAGGTGATAACTTTGA+AGG - chr1_2:18671140-18671159 Msa0060790:intron 25.0%
!!! CGTCATATATCATGTTTTTA+AGG + chr1_2:18671389-18671408 None:intergenic 25.0%
!!! ATTTGAAGTTTCATTTTGCA+GGG + chr1_2:18671530-18671549 None:intergenic 25.0%
!!! TATTTGAAGTTTCATTTTGC+AGG + chr1_2:18671531-18671550 None:intergenic 25.0%
!! AAATCACTTGGGATTTTATT+GGG + chr1_2:18671678-18671697 None:intergenic 25.0%
!!! TGTATTTTTATATTTGGGAG+TGG + chr1_2:18671784-18671803 None:intergenic 25.0%
! CTAGATACTAAAATGGATAA+AGG - chr1_2:18671977-18671996 Msa0060790:CDS 25.0%
! AGATACTAAAATGGATAAAG+GGG - chr1_2:18671979-18671998 Msa0060790:CDS 25.0%
!! AAATGCAACTTTTATCTAGT+GGG - chr1_2:18672076-18672095 Msa0060790:CDS 25.0%
! ATGTAACACCAATTTCTAAA+TGG + chr1_2:18672296-18672315 None:intergenic 25.0%
! TTTAGCATGTCTTGAATTAA+GGG + chr1_2:18672502-18672521 None:intergenic 25.0%
!! TTTTAGCATGTCTTGAATTA+AGG + chr1_2:18672503-18672522 None:intergenic 25.0%
CATTATTGTCCTCACATAAT+AGG + chr1_2:18668748-18668767 None:intergenic 30.0%
TATGAATTTGAAGAACACCA+TGG - chr1_2:18668782-18668801 Msa0060790:intron 30.0%
ATTGTAATCCAATAGTCGTA+TGG + chr1_2:18668846-18668865 None:intergenic 30.0%
TAAAGAATAATAAGGAGGGA+TGG + chr1_2:18668885-18668904 None:intergenic 30.0%
ATCCCTCCTTATTATTCTTT+AGG - chr1_2:18668884-18668903 Msa0060790:intron 30.0%
TCCCTCCTTATTATTCTTTA+GGG - chr1_2:18668885-18668904 Msa0060790:intron 30.0%
TAGAGCCCTAAAGAATAATA+AGG + chr1_2:18668893-18668912 None:intergenic 30.0%
TATCCATTAAAAGCTAGGTA+GGG + chr1_2:18668944-18668963 None:intergenic 30.0%
TTTCGTATCCATTAAAAGCT+AGG + chr1_2:18668949-18668968 None:intergenic 30.0%
TACGAGAATTCTTTCTATGT+TGG - chr1_2:18669079-18669098 Msa0060790:intron 30.0%
! CCAAATCTGAAAGAGATTTT+TGG + chr1_2:18669111-18669130 None:intergenic 30.0%
CCAAAAATCTCTTTCAGATT+TGG - chr1_2:18669108-18669127 Msa0060790:intron 30.0%
AATCTATGTATCTCACATCA+TGG - chr1_2:18669155-18669174 Msa0060790:intron 30.0%
ATATTGTTTCCATCTTCAAG+AGG + chr1_2:18669181-18669200 None:intergenic 30.0%
CTCAATAGTCTTTGTAATGA+TGG - chr1_2:18669253-18669272 Msa0060790:intron 30.0%
TAAAGTAAAGTGAGTGTTTG+GGG + chr1_2:18669334-18669353 None:intergenic 30.0%
GTAAAGTAAAGTGAGTGTTT+GGG + chr1_2:18669335-18669354 None:intergenic 30.0%
CAAACACTCACTTTACTTTA+CGG - chr1_2:18669334-18669353 Msa0060790:intron 30.0%
! TTTTTGACAAGACACATCTA+TGG - chr1_2:18669504-18669523 Msa0060790:intron 30.0%
CGATATAATAGTACAAGAAG+TGG - chr1_2:18669635-18669654 Msa0060790:intron 30.0%
AGAAGTGGGAAATACTTATA+TGG - chr1_2:18669650-18669669 Msa0060790:intron 30.0%
! GCTTTCTTTTACATGATTTC+AGG + chr1_2:18669908-18669927 None:intergenic 30.0%
ACTTAACTCATTATTGGGTA+TGG + chr1_2:18670343-18670362 None:intergenic 30.0%
CGGTAAAATTTCCTTCAATA+AGG + chr1_2:18670416-18670435 None:intergenic 30.0%
TGATGTGAATGAAGTGAAAA+TGG + chr1_2:18670507-18670526 None:intergenic 30.0%
!! TGTTTGGTTTGACTTTAGTT+TGG + chr1_2:18670884-18670903 None:intergenic 30.0%
! ACTAGGTAGTAGTTTTTGTT+TGG + chr1_2:18670900-18670919 None:intergenic 30.0%
ATTTCATCTTTAGGTGGTTA+GGG + chr1_2:18670961-18670980 None:intergenic 30.0%
TATTTCATCTTTAGGTGGTT+AGG + chr1_2:18670962-18670981 None:intergenic 30.0%
AAAGTGAAGTAACAAACAAG+TGG - chr1_2:18670998-18671017 Msa0060790:intron 30.0%
AAGTGAAGTAACAAACAAGT+GGG - chr1_2:18670999-18671018 Msa0060790:intron 30.0%
! CATATTAGCTTCTTTCATGT+GGG + chr1_2:18671236-18671255 None:intergenic 30.0%
ACACTTTCAAGACCAAAAAT+CGG - chr1_2:18671287-18671306 Msa0060790:intron 30.0%
AATCAAGTGTAGTTGATTGA+TGG + chr1_2:18671417-18671436 None:intergenic 30.0%
GGAGATATTTGTTTGAGAAT+CGG + chr1_2:18671509-18671528 None:intergenic 30.0%
AAATTCAGATCAACCAAAGA+GGG + chr1_2:18671571-18671590 None:intergenic 30.0%
AAAATTCAGATCAACCAAAG+AGG + chr1_2:18671572-18671591 None:intergenic 30.0%
!!! CTTGTAATGCTGTTTTTAGT+TGG + chr1_2:18671609-18671628 None:intergenic 30.0%
! AATCACTTGGGATTTTATTG+GGG + chr1_2:18671677-18671696 None:intergenic 30.0%
! GAAATCACTTGGGATTTTAT+TGG + chr1_2:18671679-18671698 None:intergenic 30.0%
! GAAATGCAACTTTTATCTAG+TGG - chr1_2:18672075-18672094 Msa0060790:CDS 30.0%
GCAAGAACATAGAAAAAAGA+TGG + chr1_2:18672420-18672439 None:intergenic 30.0%
TATTAGTAACAGCACGACAA+GGG + chr1_2:18668588-18668607 None:intergenic 35.0%
AACAAGAGTCATGTTCAAGA+AGG - chr1_2:18668645-18668664 Msa0060790:intron 35.0%
! ATAACATTAGCCCTCCTTTT+AGG - chr1_2:18668681-18668700 Msa0060790:intron 35.0%
! TGTCTTTTAGCCTAAAAGGA+GGG + chr1_2:18668694-18668713 None:intergenic 35.0%
GCCCTAAAGAATAATAAGGA+GGG + chr1_2:18668889-18668908 None:intergenic 35.0%
AGCCCTAAAGAATAATAAGG+AGG + chr1_2:18668890-18668909 None:intergenic 35.0%
GTATCCATTAAAAGCTAGGT+AGG + chr1_2:18668945-18668964 None:intergenic 35.0%
TCGGAATATATTGATGAAGG+TGG - chr1_2:18669025-18669044 Msa0060790:intron 35.0%
GAGAATTCTTTCTATGTTGG+TGG - chr1_2:18669082-18669101 Msa0060790:intron 35.0%
CTGGATCTATACATAAATGC+TGG + chr1_2:18669306-18669325 None:intergenic 35.0%
CAGCATTTATGTATAGATCC+AGG - chr1_2:18669304-18669323 Msa0060790:intron 35.0%
CGTAAAGTAAAGTGAGTGTT+TGG + chr1_2:18669336-18669355 None:intergenic 35.0%
AATCTTTATCATGTGCCCTA+GGG + chr1_2:18669407-18669426 None:intergenic 35.0%
ACACGCACACAACTTAAAAT+AGG + chr1_2:18669774-18669793 None:intergenic 35.0%
CAAGTAACTCCTTAAAGTCA+AGG - chr1_2:18669850-18669869 Msa0060790:intron 35.0%
! ACATGATTTCAGGTATGCTT+AGG + chr1_2:18669898-18669917 None:intergenic 35.0%
!! TATTAGTGTTGGTCTTGTGT+TGG + chr1_2:18670033-18670052 None:intergenic 35.0%
ACAAGACCAACACTAATAGT+AGG - chr1_2:18670035-18670054 Msa0060790:intron 35.0%
CATGTACCTACTATTAGTGT+TGG + chr1_2:18670044-18670063 None:intergenic 35.0%
CAACACTAATAGTAGGTACA+TGG - chr1_2:18670042-18670061 Msa0060790:intron 35.0%
!! TATTGATCAGTTGGTAGACA+GGG + chr1_2:18670106-18670125 None:intergenic 35.0%
TTTGATTGTATCCATACCCA+CGG - chr1_2:18670313-18670332 Msa0060790:intron 35.0%
CGGGTATCATATTTATCCAA+CGG - chr1_2:18670778-18670797 Msa0060790:intron 35.0%
GGGTATCATATTTATCCAAC+GGG - chr1_2:18670779-18670798 Msa0060790:intron 35.0%
GGTATCATATTTATCCAACG+GGG - chr1_2:18670780-18670799 Msa0060790:intron 35.0%
! TCTGAAATAGGGATGTCAAT+GGG + chr1_2:18670842-18670861 None:intergenic 35.0%
! TGTATGGTGTGTCTGAAATA+GGG + chr1_2:18670853-18670872 None:intergenic 35.0%
! TTGTATGGTGTGTCTGAAAT+AGG + chr1_2:18670854-18670873 None:intergenic 35.0%
TTTCAGACACACCATACAAT+AGG - chr1_2:18670855-18670874 Msa0060790:intron 35.0%
TAGTTTGGAAGCCTATTGTA+TGG + chr1_2:18670869-18670888 None:intergenic 35.0%
TGTGGTATTTCATCTTTAGG+TGG + chr1_2:18670967-18670986 None:intergenic 35.0%
CGATGTGGTATTTCATCTTT+AGG + chr1_2:18670970-18670989 None:intergenic 35.0%
AGATGAAATACCACATCGAA+AGG - chr1_2:18670972-18670991 Msa0060790:intron 35.0%
!!! GTTTTTTTTTGGTTTTGCGG+AGG + chr1_2:18671034-18671053 None:intergenic 35.0%
TTTGAAGAGATTTAAGGGAG+TGG - chr1_2:18671092-18671111 Msa0060790:intron 35.0%
AAAGACCAAAATCCTAGTGA+AGG + chr1_2:18671184-18671203 None:intergenic 35.0%
!! ACTAGGATTTTGGTCTTTTC+AGG - chr1_2:18671186-18671205 Msa0060790:intron 35.0%
! GCATATTAGCTTCTTTCATG+TGG + chr1_2:18671237-18671256 None:intergenic 35.0%
! TTGAAAGTGTGATTCTAGTG+AGG + chr1_2:18671277-18671296 None:intergenic 35.0%
CACTTTCAAGACCAAAAATC+GGG - chr1_2:18671288-18671307 Msa0060790:intron 35.0%
! ATTTCATAGCACCCGATTTT+TGG + chr1_2:18671302-18671321 None:intergenic 35.0%
!! TTTCTTAGAAGGTGTTGAGA+AGG + chr1_2:18671635-18671654 None:intergenic 35.0%
! TTCTCAACACCTTCTAAGAA+AGG - chr1_2:18671634-18671653 Msa0060790:intron 35.0%
! TCTCAACACCTTCTAAGAAA+GGG - chr1_2:18671635-18671654 Msa0060790:intron 35.0%
CAATGTAGGTGAAATCACTT+GGG + chr1_2:18671689-18671708 None:intergenic 35.0%
TCAATGTAGGTGAAATCACT+TGG + chr1_2:18671690-18671709 None:intergenic 35.0%
TTCCACATCCATATGTTAGA+GGG - chr1_2:18672194-18672213 Msa0060790:CDS 35.0%
CTTGAATTAAGGGAATGTGA+GGG + chr1_2:18672492-18672511 None:intergenic 35.0%
TCTTGAATTAAGGGAATGTG+AGG + chr1_2:18672493-18672512 None:intergenic 35.0%
GTATTAGTAACAGCACGACA+AGG + chr1_2:18668589-18668608 None:intergenic 40.0%
TTCTCGTACAACAAAGTGCA+TGG - chr1_2:18668614-18668633 Msa0060790:CDS 40.0%
AAGAGTCATGTTCAAGAAGG+TGG - chr1_2:18668648-18668667 Msa0060790:intron 40.0%
! CTGTCTTTTAGCCTAAAAGG+AGG + chr1_2:18668695-18668714 None:intergenic 40.0%
! GGACTGTCTTTTAGCCTAAA+AGG + chr1_2:18668698-18668717 None:intergenic 40.0%
AAAGACAGTCCAGAAGAATG+TGG - chr1_2:18668707-18668726 Msa0060790:intron 40.0%
GAGGTACAACCTATTATGTG+AGG - chr1_2:18668736-18668755 Msa0060790:intron 40.0%
CAACTTCACCATACGACTAT+TGG - chr1_2:18668835-18668854 Msa0060790:intron 40.0%
ATTAAAAGCTAGGTAGGGTG+AGG + chr1_2:18668939-18668958 None:intergenic 40.0%
!! TCACCCTACCTAGCTTTTAA+TGG - chr1_2:18668938-18668957 Msa0060790:intron 40.0%
TGTGAGCTGTAAAAATCGGT+CGG - chr1_2:18669006-18669025 Msa0060790:intron 40.0%
CGGTCGGAATATATTGATGA+AGG - chr1_2:18669022-18669041 Msa0060790:intron 40.0%
! TCTCTTTCAGATTTGGGACT+TGG - chr1_2:18669115-18669134 Msa0060790:intron 40.0%
! ATGCGTCGAATGGTGTTTTA+TGG - chr1_2:18669214-18669233 Msa0060790:intron 40.0%
GAATCTTTATCATGTGCCCT+AGG + chr1_2:18669408-18669427 None:intergenic 40.0%
TTAGGAAGCTAGTGAGCATT+GGG + chr1_2:18669880-18669899 None:intergenic 40.0%
TCGTCTTGGAAGTAGTTTCT+TGG + chr1_2:18670075-18670094 None:intergenic 40.0%
! ACAGGGAGAAATTTTCGTCT+TGG + chr1_2:18670089-18670108 None:intergenic 40.0%
!! CTATTGATCAGTTGGTAGAC+AGG + chr1_2:18670107-18670126 None:intergenic 40.0%
GTCTACCAACTGATCAATAG+AGG - chr1_2:18670107-18670126 Msa0060790:intron 40.0%
GACAACCTCTATTGATCAGT+TGG + chr1_2:18670115-18670134 None:intergenic 40.0%
ATTGCGAGACTTTCAGACTA+GGG - chr1_2:18670155-18670174 Msa0060790:intron 40.0%
GGTATCCACGGGTATAATAA+CGG - chr1_2:18670251-18670270 Msa0060790:intron 40.0%
GTATCCACGGGTATAATAAC+GGG - chr1_2:18670252-18670271 Msa0060790:intron 40.0%
AATACCCGTTATTATACCCG+TGG + chr1_2:18670259-18670278 None:intergenic 40.0%
TTGATTGTATCCATACCCAC+GGG - chr1_2:18670314-18670333 Msa0060790:intron 40.0%
AATGAGAAATCTTAGGTGGG+CGG + chr1_2:18670436-18670455 None:intergenic 40.0%
ATCATATTTATCCAACGGGG+CGG - chr1_2:18670783-18670802 Msa0060790:intron 40.0%
TATCATACTATCCGTACCCA+TGG - chr1_2:18670813-18670832 Msa0060790:intron 40.0%
ATCATACTATCCGTACCCAT+GGG - chr1_2:18670814-18670833 Msa0060790:intron 40.0%
! GTCTGAAATAGGGATGTCAA+TGG + chr1_2:18670843-18670862 None:intergenic 40.0%
GTTTGTGCACAATCAGTCAA+GGG + chr1_2:18670929-18670948 None:intergenic 40.0%
AGTTTGTGCACAATCAGTCA+AGG + chr1_2:18670930-18670949 None:intergenic 40.0%
TCTTTAGGTGGTTAGGGATT+TGG + chr1_2:18670955-18670974 None:intergenic 40.0%
!! TCACTTTTGTCCTTTCGATG+TGG + chr1_2:18670985-18671004 None:intergenic 40.0%
TGAAGTAACAAACAAGTGGG+TGG - chr1_2:18671002-18671021 Msa0060790:intron 40.0%
AGGGAGTGGAAATCCTATAT+CGG - chr1_2:18671106-18671125 Msa0060790:intron 40.0%
ATTGGATGCTTCTCCGATAT+AGG + chr1_2:18671122-18671141 None:intergenic 40.0%
!! TCGGAGAAGCATCCAATAAA+AGG - chr1_2:18671125-18671144 Msa0060790:intron 40.0%
! AATCCTAGTGAAGGTGTGAA+AGG + chr1_2:18671175-18671194 None:intergenic 40.0%
! TCACACCTTCACTAGGATTT+TGG - chr1_2:18671176-18671195 Msa0060790:intron 40.0%
! CTTCTTTCATGTGGGTTATC+GGG + chr1_2:18671228-18671247 None:intergenic 40.0%
! GCTTCTTTCATGTGGGTTAT+CGG + chr1_2:18671229-18671248 None:intergenic 40.0%
ATCAACCAAAGAGGGTAAAG+TGG + chr1_2:18671563-18671582 None:intergenic 40.0%
CTCTTCATCCCTTTCTTAGA+AGG + chr1_2:18671646-18671665 None:intergenic 40.0%
TATATTTGGGAGTGGTAGCT+AGG + chr1_2:18671776-18671795 None:intergenic 40.0%
! GACTAGTGGGAAAGGTATAA+TGG + chr1_2:18672174-18672193 None:intergenic 40.0%
TATGGATGTGGAAGACTAGT+GGG + chr1_2:18672187-18672206 None:intergenic 40.0%
ATATGGATGTGGAAGACTAG+TGG + chr1_2:18672188-18672207 None:intergenic 40.0%
CTTCCACATCCATATGTTAG+AGG - chr1_2:18672193-18672212 Msa0060790:CDS 40.0%
ACTCAACAAGTGAGTGAGTA+CGG - chr1_2:18672342-18672361 Msa0060790:CDS 40.0%
TAACAGCACGACAAGGGTTA+AGG + chr1_2:18668582-18668601 None:intergenic 45.0%
TCATGTTCAAGAAGGTGGTG+CGG - chr1_2:18668653-18668672 Msa0060790:intron 45.0%
CTCTTGTCACCACATTCTTC+TGG + chr1_2:18668719-18668738 None:intergenic 45.0%
CAGAAGAATGTGGTGACAAG+AGG - chr1_2:18668717-18668736 Msa0060790:intron 45.0%
! TCAGATTTGGGACTTGGAGA+CGG - chr1_2:18669121-18669140 Msa0060790:intron 45.0%
ACATCATGGCCTCTTGAAGA+TGG - chr1_2:18669169-18669188 Msa0060790:intron 45.0%
TTCTACAGACATGCGTCGAA+TGG - chr1_2:18669204-18669223 Msa0060790:intron 45.0%
! TTGGGGCATCCTTGACTTTA+AGG + chr1_2:18669862-18669881 None:intergenic 45.0%
! TAGGAAGCTAGTGAGCATTG+GGG + chr1_2:18669879-18669898 None:intergenic 45.0%
CTTAGGAAGCTAGTGAGCAT+TGG + chr1_2:18669881-18669900 None:intergenic 45.0%
AAAAAAGACACGCCGTAACG+AGG - chr1_2:18669928-18669947 Msa0060790:intron 45.0%
! TGGCCTTTCTTTGGTTGGTT+GGG + chr1_2:18669973-18669992 None:intergenic 45.0%
ATGGCCTTTCTTTGGTTGGT+TGG + chr1_2:18669974-18669993 None:intergenic 45.0%
TCTGAAAGTCTCGCAATGAG+CGG + chr1_2:18670152-18670171 None:intergenic 45.0%
CATTGCGAGACTTTCAGACT+AGG - chr1_2:18670154-18670173 Msa0060790:intron 45.0%
TTGCGAGACTTTCAGACTAG+GGG - chr1_2:18670156-18670175 Msa0060790:intron 45.0%
TATTGGGTATGGATACCCGT+GGG + chr1_2:18670332-18670351 None:intergenic 45.0%
TTATTGGGTATGGATACCCG+TGG + chr1_2:18670333-18670352 None:intergenic 45.0%
CAAAAATCCATGGGTACCCA+TGG - chr1_2:18670686-18670705 Msa0060790:intron 45.0%
AGGTATCCATGGGTATCCAT+GGG + chr1_2:18670705-18670724 None:intergenic 45.0%
TCATATTTATCCAACGGGGC+GGG - chr1_2:18670784-18670803 Msa0060790:intron 45.0%
! GTGAAGGTGTGAAAGGTCTT+TGG + chr1_2:18671168-18671187 None:intergenic 45.0%
AGACCTTTCACACCTTCACT+AGG - chr1_2:18671169-18671188 Msa0060790:intron 45.0%
CAACCAACACTTAACCCTCT+AGG - chr1_2:18671443-18671462 Msa0060790:intron 45.0%
CTTCCTAGAGGGTTAAGTGT+TGG + chr1_2:18671449-18671468 None:intergenic 45.0%
GGATGAGTTTGATGTAGCGT+TGG + chr1_2:18671488-18671507 None:intergenic 45.0%
ATGTGGAAGACTAGTGGGAA+AGG + chr1_2:18672182-18672201 None:intergenic 45.0%
CTCCCTCTAACATATGGATG+TGG + chr1_2:18672199-18672218 None:intergenic 45.0%
CTGACACTCCCTCTAACATA+TGG + chr1_2:18672205-18672224 None:intergenic 45.0%
ATGTTCTTGCAGATGACCAC+TGG - chr1_2:18672430-18672449 Msa0060790:CDS 45.0%
TGTTCTTGCAGATGACCACT+GGG - chr1_2:18672431-18672450 Msa0060790:CDS 45.0%
TTACATATGAAAGCCGGGGA+AGG + chr1_2:18672468-18672487 None:intergenic 45.0%
AGGGCTTACATATGAAAGCC+GGG + chr1_2:18672473-18672492 None:intergenic 45.0%
GAGGGCTTACATATGAAAGC+CGG + chr1_2:18672474-18672493 None:intergenic 45.0%
!!! GTTTTTTTATATTTATATTA+TGG - chr1_2:18669362-18669381 Msa0060790:intron 5.0%
!!! TTTGAATTTATTTATTTTTT+TGG + chr1_2:18670670-18670689 None:intergenic 5.0%
! CAGATTTGGGACTTGGAGAC+GGG - chr1_2:18669122-18669141 Msa0060790:intron 50.0%
! ACTTGGAGACGGGTGTCATA+TGG - chr1_2:18669132-18669151 Msa0060790:intron 50.0%
ATGCTGATGACATGTGCCCT+AGG - chr1_2:18669388-18669407 Msa0060790:intron 50.0%
TGCTGATGACATGTGCCCTA+GGG - chr1_2:18669389-18669408 Msa0060790:intron 50.0%
! TTCTTTGGTTGGTTGGGTGC+TGG + chr1_2:18669967-18669986 None:intergenic 50.0%
GCACCCAACCAACCAAAGAA+AGG - chr1_2:18669967-18669986 Msa0060790:intron 50.0%
AGGGATGGCCTTTCTTTGGT+TGG + chr1_2:18669978-18669997 None:intergenic 50.0%
GGCAAAAATACCCATGCCCA+CGG - chr1_2:18670180-18670199 Msa0060790:intron 50.0%
GCAAAAATACCCATGCCCAC+GGG - chr1_2:18670181-18670200 Msa0060790:intron 50.0%
! TTTTACCCACGGATACCCGT+GGG + chr1_2:18670199-18670218 None:intergenic 50.0%
! ATTTTACCCACGGATACCCG+TGG + chr1_2:18670200-18670219 None:intergenic 50.0%
TCCGTGGGTAAAATCCGTCA+CGG - chr1_2:18670206-18670225 Msa0060790:intron 50.0%
GTAAAATCCGTCACGGGCAT+GGG - chr1_2:18670213-18670232 Msa0060790:intron 50.0%
TAAAATCCGTCACGGGCATG+GGG - chr1_2:18670214-18670233 Msa0060790:intron 50.0%
GGTAGCTAAACGGGTATCCA+CGG - chr1_2:18670239-18670258 Msa0060790:intron 50.0%
GTAGCTAAACGGGTATCCAC+GGG - chr1_2:18670240-18670259 Msa0060790:intron 50.0%
! GAGGTATCCATGGGTATCCA+TGG + chr1_2:18670706-18670725 None:intergenic 50.0%
!! GCGGGTATTGAGGTATCCAT+GGG + chr1_2:18670715-18670734 None:intergenic 50.0%
CATGGATACCTCAATACCCG+CGG - chr1_2:18670714-18670733 Msa0060790:intron 50.0%
ATGGATACCTCAATACCCGC+GGG - chr1_2:18670715-18670734 Msa0060790:intron 50.0%
CATATTTATCCAACGGGGCG+GGG - chr1_2:18670785-18670804 Msa0060790:intron 50.0%
TCAATGGGTACCCATGGGTA+CGG + chr1_2:18670827-18670846 None:intergenic 50.0%
GGATGTCAATGGGTACCCAT+GGG + chr1_2:18670832-18670851 None:intergenic 50.0%
! TCAGTCAAGGGTTGGCAACT+AGG + chr1_2:18670917-18670936 None:intergenic 50.0%
GTGCACAATCAGTCAAGGGT+TGG + chr1_2:18670925-18670944 None:intergenic 50.0%
!! GATGTAGCGTTGGTCACTAC+CGG + chr1_2:18671478-18671497 None:intergenic 50.0%
! GGAAGCCACTTTACCCTCTT+TGG - chr1_2:18671555-18671574 Msa0060790:intron 50.0%
TGCTAGCAGACAAATGCAGC+AGG - chr1_2:18671741-18671760 Msa0060790:intron 50.0%
AAGGTAGGGCAAAAACCCAG+TGG + chr1_2:18672449-18672468 None:intergenic 50.0%
TATGAAAGCCGGGGAAGGTA+GGG + chr1_2:18672463-18672482 None:intergenic 50.0%
ATATGAAAGCCGGGGAAGGT+AGG + chr1_2:18672464-18672483 None:intergenic 50.0%
GGGCTTACATATGAAAGCCG+GGG + chr1_2:18672472-18672491 None:intergenic 50.0%
! GTGAGTGTTTGGGGCAAACC+TGG + chr1_2:18669325-18669344 None:intergenic 55.0%
AAAGACACGCCGTAACGAGG+AGG - chr1_2:18669931-18669950 Msa0060790:intron 55.0%
GTGCAGGGATGGCCTTTCTT+TGG + chr1_2:18669982-18670001 None:intergenic 55.0%
AGCCGACATCGTTGGGTGAT+GGG + chr1_2:18670010-18670029 None:intergenic 55.0%
GTGTTGGAGCCGACATCGTT+GGG + chr1_2:18670017-18670036 None:intergenic 55.0%
TGTGTTGGAGCCGACATCGT+TGG + chr1_2:18670018-18670037 None:intergenic 55.0%
CGCAATGAGCGGATCTTCTC+TGG + chr1_2:18670141-18670160 None:intergenic 55.0%
CGAGACTTTCAGACTAGGGG+TGG - chr1_2:18670159-18670178 Msa0060790:intron 55.0%
!!! CCCGTGACGGATTTTACCCA+CGG + chr1_2:18670210-18670229 None:intergenic 55.0%
CCGTGGGTAAAATCCGTCAC+GGG - chr1_2:18670207-18670226 Msa0060790:intron 55.0%
GGTAAAATCCGTCACGGGCA+TGG - chr1_2:18670212-18670231 Msa0060790:intron 55.0%
GGTATGGATACCCGTGGGTA+TGG + chr1_2:18670327-18670346 None:intergenic 55.0%
TGGGTATCCATGGGTACCCA+TGG + chr1_2:18670696-18670715 None:intergenic 55.0%
TGGGTACCCATGGATACCCA+TGG - chr1_2:18670696-18670715 Msa0060790:intron 55.0%
!! CGCGGGTATTGAGGTATCCA+TGG + chr1_2:18670716-18670735 None:intergenic 55.0%
GGGATGTCAATGGGTACCCA+TGG + chr1_2:18670833-18670852 None:intergenic 55.0%
! ATGTGGGTTATCGGGTCGTG+GGG + chr1_2:18671220-18671239 None:intergenic 55.0%
! CATGTGGGTTATCGGGTCGT+GGG + chr1_2:18671221-18671240 None:intergenic 55.0%
! TCATGTGGGTTATCGGGTCG+TGG + chr1_2:18671222-18671241 None:intergenic 55.0%
! ACCCTCTAGGAAGCACGAAC+CGG - chr1_2:18671456-18671475 Msa0060790:intron 55.0%
!! ACCGGTTCGTGCTTCCTAGA+GGG + chr1_2:18671460-18671479 None:intergenic 55.0%
!! TACCGGTTCGTGCTTCCTAG+AGG + chr1_2:18671461-18671480 None:intergenic 55.0%
! GGTTTTTGCCCTACCTTCCC+CGG - chr1_2:18672452-18672471 Msa0060790:CDS 55.0%
ACACGCCGTAACGAGGAGGA+CGG - chr1_2:18669935-18669954 Msa0060790:intron 60.0%
GTTGGCCGTCCTCCTCGTTA+CGG + chr1_2:18669943-18669962 None:intergenic 60.0%
!! CGACATCGTTGGGTGATGGG+GGG + chr1_2:18670007-18670026 None:intergenic 60.0%
! CCGACATCGTTGGGTGATGG+GGG + chr1_2:18670008-18670027 None:intergenic 60.0%
CCCCCATCACCCAACGATGT+CGG - chr1_2:18670005-18670024 Msa0060790:intron 60.0%
GCCGACATCGTTGGGTGATG+GGG + chr1_2:18670009-18670028 None:intergenic 60.0%
GAGCCGACATCGTTGGGTGA+TGG + chr1_2:18670011-18670030 None:intergenic 60.0%
GCATGGGGCGGGTAGCTAAA+CGG - chr1_2:18670229-18670248 Msa0060790:intron 60.0%
CATGGGGCGGGTAGCTAAAC+GGG - chr1_2:18670230-18670249 Msa0060790:intron 60.0%
CTCGTGGGTACCCACTATGC+GGG + chr1_2:18670743-18670762 None:intergenic 60.0%
CCTCGTGGGTACCCACTATG+CGG + chr1_2:18670744-18670763 None:intergenic 60.0%
!! CGCATAGTGGGTACCCACGA+GGG - chr1_2:18670742-18670761 Msa0060790:intron 60.0%
AGTGGGTACCCACGAGGGTA+TGG - chr1_2:18670747-18670766 Msa0060790:intron 60.0%
! GTGGGTACCCACGAGGGTAT+GGG - chr1_2:18670748-18670767 Msa0060790:intron 60.0%
! TGGGTACCCACGAGGGTATG+GGG - chr1_2:18670749-18670768 Msa0060790:intron 60.0%
TTTATCCAACGGGGCGGGGA+CGG - chr1_2:18670789-18670808 Msa0060790:intron 60.0%
!! GGTTGGTTGGGTGCTGGCGT+TGG + chr1_2:18669961-18669980 None:intergenic 65.0%
GATGGGGGGTAGTGCAGGGA+TGG + chr1_2:18669993-18670012 None:intergenic 65.0%
!! GGGTGATGGGGGGTAGTGCA+GGG + chr1_2:18669997-18670016 None:intergenic 65.0%
!! TGGGTGATGGGGGGTAGTGC+AGG + chr1_2:18669998-18670017 None:intergenic 65.0%
CCACGGATACCCGTGGGCAT+GGG + chr1_2:18670193-18670212 None:intergenic 65.0%
CCATGCCCACGGGTATCCGT+GGG - chr1_2:18670191-18670210 Msa0060790:intron 65.0%
AATCCGTCACGGGCATGGGG+CGG - chr1_2:18670217-18670236 Msa0060790:intron 65.0%
ACCCACTATGCGGGTACCCG+CGG + chr1_2:18670734-18670753 None:intergenic 65.0%
!! CCGCATAGTGGGTACCCACG+AGG - chr1_2:18670741-18670760 Msa0060790:intron 65.0%
! GTACCCACGAGGGTATGGGG+CGG - chr1_2:18670752-18670771 Msa0060790:intron 65.0%
! TACCCACGAGGGTATGGGGC+GGG - chr1_2:18670753-18670772 Msa0060790:intron 65.0%
TACCCGCCCCATACCCTCGT+GGG + chr1_2:18670758-18670777 None:intergenic 65.0%
! ACGAGGGTATGGGGCGGGTA+CGG - chr1_2:18670758-18670777 Msa0060790:intron 65.0%
TTATCCAACGGGGCGGGGAC+GGG - chr1_2:18670790-18670809 Msa0060790:intron 65.0%
CCCATGCCCACGGGTATCCG+TGG - chr1_2:18670190-18670209 Msa0060790:intron 70.0%
CCCACGGATACCCGTGGGCA+TGG + chr1_2:18670194-18670213 None:intergenic 70.0%
ATCCGTCACGGGCATGGGGC+GGG - chr1_2:18670218-18670237 Msa0060790:intron 70.0%
TACCCGCCCCATGCCCGTGA+CGG + chr1_2:18670223-18670242 None:intergenic 70.0%
! GCGGGTACCCGCGGGTATTG+AGG + chr1_2:18670725-18670744 None:intergenic 70.0%
ACCCGCGGGTACCCGCATAG+TGG - chr1_2:18670729-18670748 Msa0060790:intron 70.0%
CCCACTATGCGGGTACCCGC+GGG + chr1_2:18670733-18670752 None:intergenic 70.0%
CCCGCGGGTACCCGCATAGT+GGG - chr1_2:18670730-18670749 Msa0060790:intron 70.0%
GTACCCGCCCCATACCCTCG+TGG + chr1_2:18670759-18670778 None:intergenic 70.0%
! CGAGGGTATGGGGCGGGTAC+GGG - chr1_2:18670759-18670778 Msa0060790:intron 70.0%
GATACCCGTCCCCGCCCCGT+TGG + chr1_2:18670797-18670816 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 18668572 18672530 18668572 ID=Msa0060790;Name=Msa0060790
chr1_2 mRNA 18668572 18672530 18668572 ID=Msa0060790-mRNA-1;Parent=Msa0060790;Name=Msa0060790-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.5|1|1|2|0|268
chr1_2 exon 18671813 18672530 18671813 ID=Msa0060790-mRNA-1:exon:7248;Parent=Msa0060790-mRNA-1
chr1_2 exon 18668572 18668660 18668572 ID=Msa0060790-mRNA-1:exon:7247;Parent=Msa0060790-mRNA-1
chr1_2 CDS 18671813 18672530 18671813 ID=Msa0060790-mRNA-1:cds;Parent=Msa0060790-mRNA-1
chr1_2 CDS 18668572 18668660 18668572 ID=Msa0060790-mRNA-1:cds;Parent=Msa0060790-mRNA-1
Gene Sequence

>Msa0060790

ATGTCTTCCTTAACCCTTGTCGTGCTGTTACTAATACTGATATTCTCGTACAACAAAGTGCATGGTGATGAACAACAAGAGTCATGTTCAAGAAGGTGGTGCGGTGTTCATAACATTAGCCCTCCTTTTAGGCTAAAAGACAGTCCAGAAGAATGTGGTGACAAGAGGTACAACCTATTATGTGAGGACAATAATGAATTGATTTTGTACTATGAATTTGAAGAACACCATGGAAAATATTATGTACAATCAATTAATTACAACAACTTCACCATACGACTATTGGATTACAATCTTGCTTCTAATAATTCCATCCCTCCTTATTATTCTTTAGGGCTCTATAATTTCAGTTCTAACTTCATCACCTCACCCTACCTAGCTTTTAATGGATACGAAAACTACACTCATCATATATTGACGAAATCTATGTTATATGTGAGCTGTAAAAATCGGTCGGAATATATTGATGAAGGTGGTAACTGTATGAATAGTAGCTCATATTCACAGTACGAGAATTCTTTCTATGTTGGTGGTTACCAAAAATCTCTTTCAGATTTGGGACTTGGAGACGGGTGTCATATGGAATCTATGTATCTCACATCATGGCCTCTTGAAGATGGAAACAATATTTCTTCTACAGACATGCGTCGAATGGTGTTTTATGGATTTGAACTTTCATGGCTCAATAGTCTTTGTAATGATGGTTTCTATGCGCAGAATGACCACTGGGTTTTTGCCCTACCTTCCCCGGCTTTCATATGTAAGCCCTCACATTCCCTTAATTCAAGACATGCTAAAAAAATTTAG

Protein sequence

>Msa0060790

MSSLTLVVLLLILIFSYNKVHGDEQQESCSRRWCGVHNISPPFRLKDSPEECGDKRYNLLCEDNNELILYYEFEEHHGKYYVQSINYNNFTIRLLDYNLASNNSIPPYYSLGLYNFSSNFITSPYLAFNGYENYTHHILTKSMLYVSCKNRSEYIDEGGNCMNSSSYSQYENSFYVGGYQKSLSDLGLGDGCHMESMYLTSWPLEDGNNISSTDMRRMVFYGFELSWLNSLCNDGFYAQNDHWVFALPSPAFICKPSHSLNSRHAKKI*