Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0060790 | AES59897.2 | 75.214 | 234 | 49 | 7 | 15 | 243 | 15 | 244 | 4.26e-105 | 328 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0060790 | G7I977 | 75.214 | 234 | 49 | 7 | 15 | 243 | 15 | 244 | 2.03e-105 | 328 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0060790 | Msa0152110 | 0.899673 | 1.569497e-77 | -8.615850e-47 |
Msa0060790 | Msa0229630 | 0.822711 | 2.046243e-53 | -8.615850e-47 |
Msa0060790 | Msa0968410 | 0.883731 | 3.499389e-71 | -8.615850e-47 |
Msa0060790 | Msa0968430 | 0.855389 | 6.519298e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0060790 | MtrunA17_Chr1g0160761 | 72.385 | 239 | 54 | 5 | 1 | 232 | 1 | 234 | 1.48e-107 | 325 |
Msa0060790 | MtrunA17_Chr1g0160711 | 75.000 | 228 | 49 | 6 | 21 | 243 | 17 | 241 | 1.66e-107 | 324 |
Msa0060790 | MtrunA17_Chr1g0160721 | 62.295 | 244 | 79 | 5 | 1 | 242 | 12 | 244 | 3.46e-88 | 275 |
Msa0060790 | MtrunA17_Chr1g0160661 | 59.016 | 244 | 87 | 5 | 1 | 242 | 27 | 259 | 1.76e-84 | 260 |
Msa0060790 | MtrunA17_Chr1g0160561 | 54.331 | 254 | 94 | 8 | 2 | 241 | 7 | 252 | 3.92e-75 | 241 |
Msa0060790 | MtrunA17_Chr1g0160701 | 59.402 | 234 | 72 | 11 | 17 | 238 | 32 | 254 | 1.32e-69 | 226 |
Msa0060790 | MtrunA17_Chr1g0157791 | 34.783 | 253 | 132 | 11 | 7 | 237 | 6 | 247 | 4.66e-29 | 115 |
Msa0060790 | MtrunA17_Chr1g0158061 | 35.000 | 220 | 121 | 9 | 28 | 234 | 29 | 239 | 1.50e-28 | 110 |
Msa0060790 | MtrunA17_Chr1g0157961 | 35.268 | 224 | 124 | 8 | 24 | 234 | 33 | 248 | 3.18e-27 | 107 |
Msa0060790 | MtrunA17_Chr1g0157991 | 35.526 | 228 | 122 | 8 | 24 | 234 | 28 | 247 | 7.67e-27 | 109 |
Msa0060790 | MtrunA17_Chr1g0158151 | 34.496 | 258 | 135 | 13 | 1 | 234 | 1 | 248 | 1.33e-26 | 108 |
Msa0060790 | MtrunA17_Chr1g0158191 | 33.852 | 257 | 121 | 14 | 10 | 233 | 4 | 244 | 1.95e-26 | 108 |
Msa0060790 | MtrunA17_Chr3g0088331 | 33.628 | 226 | 116 | 9 | 24 | 234 | 36 | 242 | 2.79e-25 | 101 |
Msa0060790 | MtrunA17_Chr1g0158411 | 32.287 | 223 | 120 | 8 | 26 | 234 | 46 | 251 | 1.95e-23 | 99.4 |
Msa0060790 | MtrunA17_Chr1g0158041 | 33.040 | 227 | 125 | 8 | 26 | 234 | 28 | 245 | 1.90e-22 | 96.7 |
Msa0060790 | MtrunA17_Chr1g0157881 | 29.861 | 288 | 129 | 12 | 8 | 234 | 34 | 309 | 3.74e-22 | 95.9 |
Msa0060790 | MtrunA17_Chr1g0158761 | 32.114 | 246 | 127 | 11 | 1 | 234 | 1 | 218 | 7.80e-22 | 94.7 |
Msa0060790 | MtrunA17_Chr6g0467711 | 32.812 | 256 | 128 | 13 | 3 | 234 | 12 | 247 | 1.16e-21 | 94.4 |
Msa0060790 | MtrunA17_Chr1g0158461 | 29.104 | 268 | 146 | 11 | 1 | 234 | 17 | 274 | 1.64e-21 | 91.7 |
Msa0060790 | MtrunA17_Chr1g0158731 | 29.960 | 247 | 144 | 10 | 4 | 234 | 8 | 241 | 4.25e-21 | 90.5 |
Msa0060790 | MtrunA17_Chr1g0158541 | 32.794 | 247 | 137 | 11 | 5 | 234 | 16 | 250 | 2.01e-19 | 87.8 |
Msa0060790 | MtrunA17_Chr1g0157861 | 27.645 | 293 | 134 | 14 | 26 | 257 | 37 | 312 | 5.22e-19 | 86.7 |
Msa0060790 | MtrunA17_Chr1g0158331 | 29.434 | 265 | 142 | 13 | 1 | 234 | 17 | 267 | 5.89e-19 | 85.1 |
Msa0060790 | MtrunA17_Chr1g0158661 | 28.980 | 245 | 136 | 9 | 7 | 232 | 17 | 242 | 2.67e-18 | 84.3 |
Msa0060790 | MtrunA17_Chr1g0157911 | 30.435 | 230 | 124 | 11 | 27 | 234 | 35 | 250 | 5.39e-18 | 83.6 |
Msa0060790 | MtrunA17_Chr1g0158631 | 28.623 | 276 | 142 | 13 | 7 | 254 | 17 | 265 | 9.95e-18 | 82.8 |
Msa0060790 | MtrunA17_Chr1g0158121 | 48.148 | 81 | 36 | 2 | 24 | 103 | 29 | 104 | 4.35e-15 | 70.5 |
Msa0060790 | MtrunA17_Chr1g0158301 | 28.800 | 250 | 145 | 11 | 1 | 234 | 16 | 248 | 1.08e-14 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 50 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | 1_2:-18672196 | Msa0060790:CDS |
TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | 1_2:-18672195 | Msa0060790:CDS |
CATTATTGTCCTCACATAAT+AGG | 0.236387 | 1_2:+18672335 | None:intergenic |
CAACTTCACCATACGACTAT+TGG | 0.252740 | 1_2:-18672245 | Msa0060790:CDS |
CTCTTGTCACCACATTCTTC+TGG | 0.284196 | 1_2:+18672364 | None:intergenic |
TTTATGGATTTGAACTTTCA+TGG | 0.314825 | 1_2:-18671850 | Msa0060790:CDS |
CTCAATAGTCTTTGTAATGA+TGG | 0.335428 | 1_2:-18671827 | Msa0060790:CDS |
TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | 1_2:+18672190 | None:intergenic |
TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 1_2:-18671965 | Msa0060790:CDS |
TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | 1_2:+18668581 | None:intergenic |
ATGTTCTTGCAGATGACCAC+TGG | 0.375087 | 1_2:-18668650 | Msa0060790:intron |
CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 1_2:-18671958 | Msa0060790:CDS |
ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 1_2:-18671948 | Msa0060790:CDS |
TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | 1_2:+18672134 | None:intergenic |
TAACAGCACGACAAGGGTTA+AGG | 0.463192 | 1_2:+18672501 | None:intergenic |
ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | 1_2:-18671911 | Msa0060790:CDS |
GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | 1_2:-18671998 | Msa0060790:CDS |
TACGAGAATTCTTTCTATGT+TGG | 0.482804 | 1_2:-18672001 | Msa0060790:CDS |
TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 1_2:-18671959 | Msa0060790:CDS |
AGGGCTTACATATGAAAGCC+GGG | 0.509438 | 1_2:+18668610 | None:intergenic |
TATGAAAGCCGGGGAAGGTA+GGG | 0.509508 | 1_2:+18668620 | None:intergenic |
ATATGAAAGCCGGGGAAGGT+AGG | 0.518798 | 1_2:+18668619 | None:intergenic |
GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | 1_2:+18672138 | None:intergenic |
CGGTCGGAATATATTGATGA+AGG | 0.526826 | 1_2:-18672058 | Msa0060790:CDS |
TGTTCTTGCAGATGACCACT+GGG | 0.531694 | 1_2:-18668649 | Msa0060790:intron |
TTCTACAGACATGCGTCGAA+TGG | 0.543277 | 1_2:-18671876 | Msa0060790:CDS |
GAGGGCTTACATATGAAAGC+CGG | 0.545576 | 1_2:+18668609 | None:intergenic |
TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | 1_2:+18672198 | None:intergenic |
AATCTATGTATCTCACATCA+TGG | 0.571651 | 1_2:-18671925 | Msa0060790:CDS |
GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | 1_2:+18672194 | None:intergenic |
ATTGTAATCCAATAGTCGTA+TGG | 0.577306 | 1_2:+18672237 | None:intergenic |
TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | 1_2:-18672466 | Msa0060790:CDS |
AACAAGAGTCATGTTCAAGA+AGG | 0.596613 | 1_2:-18672435 | Msa0060790:CDS |
ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | 1_2:+18671902 | None:intergenic |
AAGAGTCATGTTCAAGAAGG+TGG | 0.600098 | 1_2:-18672432 | Msa0060790:CDS |
ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | 1_2:+18672144 | None:intergenic |
TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | 1_2:+18668590 | None:intergenic |
TTACATATGAAAGCCGGGGA+AGG | 0.620719 | 1_2:+18668615 | None:intergenic |
CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | 1_2:-18672363 | Msa0060790:CDS |
AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | 1_2:+18672193 | None:intergenic |
TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | 1_2:+18672139 | None:intergenic |
GTATTAGTAACAGCACGACA+AGG | 0.628217 | 1_2:+18672494 | None:intergenic |
TCGGAATATATTGATGAAGG+TGG | 0.639500 | 1_2:-18672055 | Msa0060790:CDS |
TATTAGTAACAGCACGACAA+GGG | 0.651789 | 1_2:+18672495 | None:intergenic |
CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | 1_2:+18668591 | None:intergenic |
TATGAATTTGAAGAACACCA+TGG | 0.674399 | 1_2:-18672298 | Msa0060790:CDS |
GAGGTACAACCTATTATGTG+AGG | 0.678478 | 1_2:-18672344 | Msa0060790:CDS |
TCATGTTCAAGAAGGTGGTG+CGG | 0.678993 | 1_2:-18672427 | Msa0060790:CDS |
AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 1_2:-18672373 | Msa0060790:CDS |
GGGCTTACATATGAAAGCCG+GGG | 0.696923 | 1_2:+18668611 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTATATTTATATTAT+GGG | - | chr1_2:18669363-18669382 | Msa0060790:intron | 0.0% |
!! | AAAAAAATAAAAATAAAAAT+AGG | + | chr1_2:18670464-18670483 | None:intergenic | 0.0% |
!! | TTTCCAAATAAATTATATTT+GGG | - | chr1_2:18669793-18669812 | Msa0060790:intron | 10.0% |
!! | CATTAAATTTAAAAGTAAAA+GGG | + | chr1_2:18672035-18672054 | None:intergenic | 10.0% |
!! | GTTTCCAAATAAATTATATT+TGG | - | chr1_2:18669792-18669811 | Msa0060790:intron | 15.0% |
!! | TTCCAAATAAATTATATTTG+GGG | - | chr1_2:18669794-18669813 | Msa0060790:intron | 15.0% |
!!! | AGTTACTTGTTTTTTTTTTT+GGG | + | chr1_2:18669839-18669858 | None:intergenic | 15.0% |
!! | AATTTACTTAACTCATTATT+GGG | + | chr1_2:18670348-18670367 | None:intergenic | 15.0% |
!! | TAATTTACTTAACTCATTAT+TGG | + | chr1_2:18670349-18670368 | None:intergenic | 15.0% |
!!! | TAAGAATCATAAATTTTCTA+TGG | - | chr1_2:18670550-18670569 | Msa0060790:intron | 15.0% |
!!! | ATGATTTATGAAATTTTGAA+TGG | - | chr1_2:18670580-18670599 | Msa0060790:intron | 15.0% |
!! | TAAATAAATTCAAAAATCCA+TGG | - | chr1_2:18670676-18670695 | Msa0060790:intron | 15.0% |
!! | AAATAAATTCAAAAATCCAT+GGG | - | chr1_2:18670677-18670696 | Msa0060790:intron | 15.0% |
!! | AAATGAAACTTCAAATATTT+CGG | - | chr1_2:18671534-18671553 | Msa0060790:intron | 15.0% |
!!! | TGTTACATTTATTTAGTTTT+TGG | - | chr1_2:18671848-18671867 | Msa0060790:CDS | 15.0% |
!! | GCATTAAATTTAAAAGTAAA+AGG | + | chr1_2:18672036-18672055 | None:intergenic | 15.0% |
!! | GTAAATAAGAGAAAAATTAA+GGG | + | chr1_2:18672152-18672171 | None:intergenic | 15.0% |
!! | TATATCCATTGTAAAAAAAT+TGG | - | chr1_2:18672377-18672396 | Msa0060790:CDS | 15.0% |
!!! | ATTGTACATAATATTTTCCA+TGG | + | chr1_2:18668802-18668821 | None:intergenic | 20.0% |
!!! | CTCTATTTGTTTTTTTTGAT+GGG | + | chr1_2:18669590-18669609 | None:intergenic | 20.0% |
!!! | ACTCTATTTGTTTTTTTTGA+TGG | + | chr1_2:18669591-18669610 | None:intergenic | 20.0% |
!! | TACCCCAAATATAATTTATT+TGG | + | chr1_2:18669799-18669818 | None:intergenic | 20.0% |
!!! | GAGTTACTTGTTTTTTTTTT+TGG | + | chr1_2:18669840-18669859 | None:intergenic | 20.0% |
!! | ACATCATAAAACATATTCTA+TGG | - | chr1_2:18670521-18670540 | Msa0060790:intron | 20.0% |
!!! | TGTTTAAAAGTTGAAGTTTT+TGG | - | chr1_2:18670615-18670634 | Msa0060790:intron | 20.0% |
!!! | ATATCATGTGTGTTTTTTTT+TGG | + | chr1_2:18671045-18671064 | None:intergenic | 20.0% |
!! | AAAAAAAAACACACATGATA+TGG | - | chr1_2:18671044-18671063 | Msa0060790:intron | 20.0% |
!! | TTCAATTTGAAGAGATTTAA+GGG | - | chr1_2:18671087-18671106 | Msa0060790:intron | 20.0% |
!!! | TCATGTTTTTAAGGTATTTT+AGG | + | chr1_2:18671380-18671399 | None:intergenic | 20.0% |
!! | CTTAAAAACATGATATATGA+CGG | - | chr1_2:18671387-18671406 | Msa0060790:intron | 20.0% |
!! | AATTTGTATTGTATCAATGT+AGG | + | chr1_2:18671703-18671722 | None:intergenic | 20.0% |
!!! | GAGCATGTATTTTTATATTT+GGG | + | chr1_2:18671789-18671808 | None:intergenic | 20.0% |
!!! | TGAGCATGTATTTTTATATT+TGG | + | chr1_2:18671790-18671809 | None:intergenic | 20.0% |
!!! | GAAGAAATTGAGATATTTTA+AGG | - | chr1_2:18671879-18671898 | Msa0060790:CDS | 20.0% |
!!! | AGTATCTAGTTTAGTAATTT+TGG | + | chr1_2:18671966-18671985 | None:intergenic | 20.0% |
!! | TACTAAACTAGATACTAAAA+TGG | - | chr1_2:18671970-18671989 | Msa0060790:CDS | 20.0% |
!! | TAGATACTAAAATGGATAAA+GGG | - | chr1_2:18671978-18671997 | Msa0060790:CDS | 20.0% |
!! | GGTAAATAAGAGAAAAATTA+AGG | + | chr1_2:18672153-18672172 | None:intergenic | 20.0% |
!! | TTCTATTACCATTTAGAAAT+TGG | - | chr1_2:18672285-18672304 | Msa0060790:CDS | 20.0% |
!!! | AACTACCAATTTTTTTACAA+TGG | + | chr1_2:18672385-18672404 | None:intergenic | 20.0% |
! | TATATGTGAGCTGTAAAAAT+CGG | - | chr1_2:18669002-18669021 | Msa0060790:intron | 25.0% |
! | CAAAAATCTCTTTCAGATTT+GGG | - | chr1_2:18669109-18669128 | Msa0060790:intron | 25.0% |
! | TTTATGGATTTGAACTTTCA+TGG | - | chr1_2:18669230-18669249 | Msa0060790:intron | 25.0% |
! | GATATAATAGTACAAGAAGT+GGG | - | chr1_2:18669636-18669655 | Msa0060790:intron | 25.0% |
!!! | TTGTCAAAATGGTCTTATTT+AGG | + | chr1_2:18669683-18669702 | None:intergenic | 25.0% |
! | GTTATGTATGTTTGTCAAAA+TGG | + | chr1_2:18669694-18669713 | None:intergenic | 25.0% |
! | TTTGACTACCCATTATTATA+TGG | - | chr1_2:18670277-18670296 | Msa0060790:intron | 25.0% |
! | TACCCATTATTATATGGATA+TGG | - | chr1_2:18670283-18670302 | Msa0060790:intron | 25.0% |
! | GTCCATATCCATATAATAAT+GGG | + | chr1_2:18670288-18670307 | None:intergenic | 25.0% |
! | TGTCCATATCCATATAATAA+TGG | + | chr1_2:18670289-18670308 | None:intergenic | 25.0% |
! | TTATTATATGGATATGGACA+TGG | - | chr1_2:18670289-18670308 | Msa0060790:intron | 25.0% |
! | TAAAGTTGTTACCTTATTGA+AGG | - | chr1_2:18670402-18670421 | Msa0060790:intron | 25.0% |
! | ATTAATGAGAAATCTTAGGT+GGG | + | chr1_2:18670439-18670458 | None:intergenic | 25.0% |
! | TATTAATGAGAAATCTTAGG+TGG | + | chr1_2:18670440-18670459 | None:intergenic | 25.0% |
! | GGTTATTAATGAGAAATCTT+AGG | + | chr1_2:18670443-18670462 | None:intergenic | 25.0% |
!!! | TAAAAGTTGAAGTTTTTGGT+AGG | - | chr1_2:18670619-18670638 | Msa0060790:intron | 25.0% |
!!! | TGTGTTTTTTTTTGGTTTTG+CGG | + | chr1_2:18671037-18671056 | None:intergenic | 25.0% |
! | CTTCAATTTGAAGAGATTTA+AGG | - | chr1_2:18671086-18671105 | Msa0060790:intron | 25.0% |
!! | TCAAAGTTATCACCTTTTAT+TGG | + | chr1_2:18671140-18671159 | None:intergenic | 25.0% |
! | ATAAAAGGTGATAACTTTGA+AGG | - | chr1_2:18671140-18671159 | Msa0060790:intron | 25.0% |
!!! | CGTCATATATCATGTTTTTA+AGG | + | chr1_2:18671389-18671408 | None:intergenic | 25.0% |
!!! | ATTTGAAGTTTCATTTTGCA+GGG | + | chr1_2:18671530-18671549 | None:intergenic | 25.0% |
!!! | TATTTGAAGTTTCATTTTGC+AGG | + | chr1_2:18671531-18671550 | None:intergenic | 25.0% |
!! | AAATCACTTGGGATTTTATT+GGG | + | chr1_2:18671678-18671697 | None:intergenic | 25.0% |
!!! | TGTATTTTTATATTTGGGAG+TGG | + | chr1_2:18671784-18671803 | None:intergenic | 25.0% |
! | CTAGATACTAAAATGGATAA+AGG | - | chr1_2:18671977-18671996 | Msa0060790:CDS | 25.0% |
! | AGATACTAAAATGGATAAAG+GGG | - | chr1_2:18671979-18671998 | Msa0060790:CDS | 25.0% |
!! | AAATGCAACTTTTATCTAGT+GGG | - | chr1_2:18672076-18672095 | Msa0060790:CDS | 25.0% |
! | ATGTAACACCAATTTCTAAA+TGG | + | chr1_2:18672296-18672315 | None:intergenic | 25.0% |
! | TTTAGCATGTCTTGAATTAA+GGG | + | chr1_2:18672502-18672521 | None:intergenic | 25.0% |
!! | TTTTAGCATGTCTTGAATTA+AGG | + | chr1_2:18672503-18672522 | None:intergenic | 25.0% |
CATTATTGTCCTCACATAAT+AGG | + | chr1_2:18668748-18668767 | None:intergenic | 30.0% | |
TATGAATTTGAAGAACACCA+TGG | - | chr1_2:18668782-18668801 | Msa0060790:intron | 30.0% | |
ATTGTAATCCAATAGTCGTA+TGG | + | chr1_2:18668846-18668865 | None:intergenic | 30.0% | |
TAAAGAATAATAAGGAGGGA+TGG | + | chr1_2:18668885-18668904 | None:intergenic | 30.0% | |
ATCCCTCCTTATTATTCTTT+AGG | - | chr1_2:18668884-18668903 | Msa0060790:intron | 30.0% | |
TCCCTCCTTATTATTCTTTA+GGG | - | chr1_2:18668885-18668904 | Msa0060790:intron | 30.0% | |
TAGAGCCCTAAAGAATAATA+AGG | + | chr1_2:18668893-18668912 | None:intergenic | 30.0% | |
TATCCATTAAAAGCTAGGTA+GGG | + | chr1_2:18668944-18668963 | None:intergenic | 30.0% | |
TTTCGTATCCATTAAAAGCT+AGG | + | chr1_2:18668949-18668968 | None:intergenic | 30.0% | |
TACGAGAATTCTTTCTATGT+TGG | - | chr1_2:18669079-18669098 | Msa0060790:intron | 30.0% | |
! | CCAAATCTGAAAGAGATTTT+TGG | + | chr1_2:18669111-18669130 | None:intergenic | 30.0% |
CCAAAAATCTCTTTCAGATT+TGG | - | chr1_2:18669108-18669127 | Msa0060790:intron | 30.0% | |
AATCTATGTATCTCACATCA+TGG | - | chr1_2:18669155-18669174 | Msa0060790:intron | 30.0% | |
ATATTGTTTCCATCTTCAAG+AGG | + | chr1_2:18669181-18669200 | None:intergenic | 30.0% | |
CTCAATAGTCTTTGTAATGA+TGG | - | chr1_2:18669253-18669272 | Msa0060790:intron | 30.0% | |
TAAAGTAAAGTGAGTGTTTG+GGG | + | chr1_2:18669334-18669353 | None:intergenic | 30.0% | |
GTAAAGTAAAGTGAGTGTTT+GGG | + | chr1_2:18669335-18669354 | None:intergenic | 30.0% | |
CAAACACTCACTTTACTTTA+CGG | - | chr1_2:18669334-18669353 | Msa0060790:intron | 30.0% | |
! | TTTTTGACAAGACACATCTA+TGG | - | chr1_2:18669504-18669523 | Msa0060790:intron | 30.0% |
CGATATAATAGTACAAGAAG+TGG | - | chr1_2:18669635-18669654 | Msa0060790:intron | 30.0% | |
AGAAGTGGGAAATACTTATA+TGG | - | chr1_2:18669650-18669669 | Msa0060790:intron | 30.0% | |
! | GCTTTCTTTTACATGATTTC+AGG | + | chr1_2:18669908-18669927 | None:intergenic | 30.0% |
ACTTAACTCATTATTGGGTA+TGG | + | chr1_2:18670343-18670362 | None:intergenic | 30.0% | |
CGGTAAAATTTCCTTCAATA+AGG | + | chr1_2:18670416-18670435 | None:intergenic | 30.0% | |
TGATGTGAATGAAGTGAAAA+TGG | + | chr1_2:18670507-18670526 | None:intergenic | 30.0% | |
!! | TGTTTGGTTTGACTTTAGTT+TGG | + | chr1_2:18670884-18670903 | None:intergenic | 30.0% |
! | ACTAGGTAGTAGTTTTTGTT+TGG | + | chr1_2:18670900-18670919 | None:intergenic | 30.0% |
ATTTCATCTTTAGGTGGTTA+GGG | + | chr1_2:18670961-18670980 | None:intergenic | 30.0% | |
TATTTCATCTTTAGGTGGTT+AGG | + | chr1_2:18670962-18670981 | None:intergenic | 30.0% | |
AAAGTGAAGTAACAAACAAG+TGG | - | chr1_2:18670998-18671017 | Msa0060790:intron | 30.0% | |
AAGTGAAGTAACAAACAAGT+GGG | - | chr1_2:18670999-18671018 | Msa0060790:intron | 30.0% | |
! | CATATTAGCTTCTTTCATGT+GGG | + | chr1_2:18671236-18671255 | None:intergenic | 30.0% |
ACACTTTCAAGACCAAAAAT+CGG | - | chr1_2:18671287-18671306 | Msa0060790:intron | 30.0% | |
AATCAAGTGTAGTTGATTGA+TGG | + | chr1_2:18671417-18671436 | None:intergenic | 30.0% | |
GGAGATATTTGTTTGAGAAT+CGG | + | chr1_2:18671509-18671528 | None:intergenic | 30.0% | |
AAATTCAGATCAACCAAAGA+GGG | + | chr1_2:18671571-18671590 | None:intergenic | 30.0% | |
AAAATTCAGATCAACCAAAG+AGG | + | chr1_2:18671572-18671591 | None:intergenic | 30.0% | |
!!! | CTTGTAATGCTGTTTTTAGT+TGG | + | chr1_2:18671609-18671628 | None:intergenic | 30.0% |
! | AATCACTTGGGATTTTATTG+GGG | + | chr1_2:18671677-18671696 | None:intergenic | 30.0% |
! | GAAATCACTTGGGATTTTAT+TGG | + | chr1_2:18671679-18671698 | None:intergenic | 30.0% |
! | GAAATGCAACTTTTATCTAG+TGG | - | chr1_2:18672075-18672094 | Msa0060790:CDS | 30.0% |
GCAAGAACATAGAAAAAAGA+TGG | + | chr1_2:18672420-18672439 | None:intergenic | 30.0% | |
TATTAGTAACAGCACGACAA+GGG | + | chr1_2:18668588-18668607 | None:intergenic | 35.0% | |
AACAAGAGTCATGTTCAAGA+AGG | - | chr1_2:18668645-18668664 | Msa0060790:intron | 35.0% | |
! | ATAACATTAGCCCTCCTTTT+AGG | - | chr1_2:18668681-18668700 | Msa0060790:intron | 35.0% |
! | TGTCTTTTAGCCTAAAAGGA+GGG | + | chr1_2:18668694-18668713 | None:intergenic | 35.0% |
GCCCTAAAGAATAATAAGGA+GGG | + | chr1_2:18668889-18668908 | None:intergenic | 35.0% | |
AGCCCTAAAGAATAATAAGG+AGG | + | chr1_2:18668890-18668909 | None:intergenic | 35.0% | |
GTATCCATTAAAAGCTAGGT+AGG | + | chr1_2:18668945-18668964 | None:intergenic | 35.0% | |
TCGGAATATATTGATGAAGG+TGG | - | chr1_2:18669025-18669044 | Msa0060790:intron | 35.0% | |
GAGAATTCTTTCTATGTTGG+TGG | - | chr1_2:18669082-18669101 | Msa0060790:intron | 35.0% | |
CTGGATCTATACATAAATGC+TGG | + | chr1_2:18669306-18669325 | None:intergenic | 35.0% | |
CAGCATTTATGTATAGATCC+AGG | - | chr1_2:18669304-18669323 | Msa0060790:intron | 35.0% | |
CGTAAAGTAAAGTGAGTGTT+TGG | + | chr1_2:18669336-18669355 | None:intergenic | 35.0% | |
AATCTTTATCATGTGCCCTA+GGG | + | chr1_2:18669407-18669426 | None:intergenic | 35.0% | |
ACACGCACACAACTTAAAAT+AGG | + | chr1_2:18669774-18669793 | None:intergenic | 35.0% | |
CAAGTAACTCCTTAAAGTCA+AGG | - | chr1_2:18669850-18669869 | Msa0060790:intron | 35.0% | |
! | ACATGATTTCAGGTATGCTT+AGG | + | chr1_2:18669898-18669917 | None:intergenic | 35.0% |
!! | TATTAGTGTTGGTCTTGTGT+TGG | + | chr1_2:18670033-18670052 | None:intergenic | 35.0% |
ACAAGACCAACACTAATAGT+AGG | - | chr1_2:18670035-18670054 | Msa0060790:intron | 35.0% | |
CATGTACCTACTATTAGTGT+TGG | + | chr1_2:18670044-18670063 | None:intergenic | 35.0% | |
CAACACTAATAGTAGGTACA+TGG | - | chr1_2:18670042-18670061 | Msa0060790:intron | 35.0% | |
!! | TATTGATCAGTTGGTAGACA+GGG | + | chr1_2:18670106-18670125 | None:intergenic | 35.0% |
TTTGATTGTATCCATACCCA+CGG | - | chr1_2:18670313-18670332 | Msa0060790:intron | 35.0% | |
CGGGTATCATATTTATCCAA+CGG | - | chr1_2:18670778-18670797 | Msa0060790:intron | 35.0% | |
GGGTATCATATTTATCCAAC+GGG | - | chr1_2:18670779-18670798 | Msa0060790:intron | 35.0% | |
GGTATCATATTTATCCAACG+GGG | - | chr1_2:18670780-18670799 | Msa0060790:intron | 35.0% | |
! | TCTGAAATAGGGATGTCAAT+GGG | + | chr1_2:18670842-18670861 | None:intergenic | 35.0% |
! | TGTATGGTGTGTCTGAAATA+GGG | + | chr1_2:18670853-18670872 | None:intergenic | 35.0% |
! | TTGTATGGTGTGTCTGAAAT+AGG | + | chr1_2:18670854-18670873 | None:intergenic | 35.0% |
TTTCAGACACACCATACAAT+AGG | - | chr1_2:18670855-18670874 | Msa0060790:intron | 35.0% | |
TAGTTTGGAAGCCTATTGTA+TGG | + | chr1_2:18670869-18670888 | None:intergenic | 35.0% | |
TGTGGTATTTCATCTTTAGG+TGG | + | chr1_2:18670967-18670986 | None:intergenic | 35.0% | |
CGATGTGGTATTTCATCTTT+AGG | + | chr1_2:18670970-18670989 | None:intergenic | 35.0% | |
AGATGAAATACCACATCGAA+AGG | - | chr1_2:18670972-18670991 | Msa0060790:intron | 35.0% | |
!!! | GTTTTTTTTTGGTTTTGCGG+AGG | + | chr1_2:18671034-18671053 | None:intergenic | 35.0% |
TTTGAAGAGATTTAAGGGAG+TGG | - | chr1_2:18671092-18671111 | Msa0060790:intron | 35.0% | |
AAAGACCAAAATCCTAGTGA+AGG | + | chr1_2:18671184-18671203 | None:intergenic | 35.0% | |
!! | ACTAGGATTTTGGTCTTTTC+AGG | - | chr1_2:18671186-18671205 | Msa0060790:intron | 35.0% |
! | GCATATTAGCTTCTTTCATG+TGG | + | chr1_2:18671237-18671256 | None:intergenic | 35.0% |
! | TTGAAAGTGTGATTCTAGTG+AGG | + | chr1_2:18671277-18671296 | None:intergenic | 35.0% |
CACTTTCAAGACCAAAAATC+GGG | - | chr1_2:18671288-18671307 | Msa0060790:intron | 35.0% | |
! | ATTTCATAGCACCCGATTTT+TGG | + | chr1_2:18671302-18671321 | None:intergenic | 35.0% |
!! | TTTCTTAGAAGGTGTTGAGA+AGG | + | chr1_2:18671635-18671654 | None:intergenic | 35.0% |
! | TTCTCAACACCTTCTAAGAA+AGG | - | chr1_2:18671634-18671653 | Msa0060790:intron | 35.0% |
! | TCTCAACACCTTCTAAGAAA+GGG | - | chr1_2:18671635-18671654 | Msa0060790:intron | 35.0% |
CAATGTAGGTGAAATCACTT+GGG | + | chr1_2:18671689-18671708 | None:intergenic | 35.0% | |
TCAATGTAGGTGAAATCACT+TGG | + | chr1_2:18671690-18671709 | None:intergenic | 35.0% | |
TTCCACATCCATATGTTAGA+GGG | - | chr1_2:18672194-18672213 | Msa0060790:CDS | 35.0% | |
CTTGAATTAAGGGAATGTGA+GGG | + | chr1_2:18672492-18672511 | None:intergenic | 35.0% | |
TCTTGAATTAAGGGAATGTG+AGG | + | chr1_2:18672493-18672512 | None:intergenic | 35.0% | |
GTATTAGTAACAGCACGACA+AGG | + | chr1_2:18668589-18668608 | None:intergenic | 40.0% | |
TTCTCGTACAACAAAGTGCA+TGG | - | chr1_2:18668614-18668633 | Msa0060790:CDS | 40.0% | |
AAGAGTCATGTTCAAGAAGG+TGG | - | chr1_2:18668648-18668667 | Msa0060790:intron | 40.0% | |
! | CTGTCTTTTAGCCTAAAAGG+AGG | + | chr1_2:18668695-18668714 | None:intergenic | 40.0% |
! | GGACTGTCTTTTAGCCTAAA+AGG | + | chr1_2:18668698-18668717 | None:intergenic | 40.0% |
AAAGACAGTCCAGAAGAATG+TGG | - | chr1_2:18668707-18668726 | Msa0060790:intron | 40.0% | |
GAGGTACAACCTATTATGTG+AGG | - | chr1_2:18668736-18668755 | Msa0060790:intron | 40.0% | |
CAACTTCACCATACGACTAT+TGG | - | chr1_2:18668835-18668854 | Msa0060790:intron | 40.0% | |
ATTAAAAGCTAGGTAGGGTG+AGG | + | chr1_2:18668939-18668958 | None:intergenic | 40.0% | |
!! | TCACCCTACCTAGCTTTTAA+TGG | - | chr1_2:18668938-18668957 | Msa0060790:intron | 40.0% |
TGTGAGCTGTAAAAATCGGT+CGG | - | chr1_2:18669006-18669025 | Msa0060790:intron | 40.0% | |
CGGTCGGAATATATTGATGA+AGG | - | chr1_2:18669022-18669041 | Msa0060790:intron | 40.0% | |
! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_2:18669115-18669134 | Msa0060790:intron | 40.0% |
! | ATGCGTCGAATGGTGTTTTA+TGG | - | chr1_2:18669214-18669233 | Msa0060790:intron | 40.0% |
GAATCTTTATCATGTGCCCT+AGG | + | chr1_2:18669408-18669427 | None:intergenic | 40.0% | |
TTAGGAAGCTAGTGAGCATT+GGG | + | chr1_2:18669880-18669899 | None:intergenic | 40.0% | |
TCGTCTTGGAAGTAGTTTCT+TGG | + | chr1_2:18670075-18670094 | None:intergenic | 40.0% | |
! | ACAGGGAGAAATTTTCGTCT+TGG | + | chr1_2:18670089-18670108 | None:intergenic | 40.0% |
!! | CTATTGATCAGTTGGTAGAC+AGG | + | chr1_2:18670107-18670126 | None:intergenic | 40.0% |
GTCTACCAACTGATCAATAG+AGG | - | chr1_2:18670107-18670126 | Msa0060790:intron | 40.0% | |
GACAACCTCTATTGATCAGT+TGG | + | chr1_2:18670115-18670134 | None:intergenic | 40.0% | |
ATTGCGAGACTTTCAGACTA+GGG | - | chr1_2:18670155-18670174 | Msa0060790:intron | 40.0% | |
GGTATCCACGGGTATAATAA+CGG | - | chr1_2:18670251-18670270 | Msa0060790:intron | 40.0% | |
GTATCCACGGGTATAATAAC+GGG | - | chr1_2:18670252-18670271 | Msa0060790:intron | 40.0% | |
AATACCCGTTATTATACCCG+TGG | + | chr1_2:18670259-18670278 | None:intergenic | 40.0% | |
TTGATTGTATCCATACCCAC+GGG | - | chr1_2:18670314-18670333 | Msa0060790:intron | 40.0% | |
AATGAGAAATCTTAGGTGGG+CGG | + | chr1_2:18670436-18670455 | None:intergenic | 40.0% | |
ATCATATTTATCCAACGGGG+CGG | - | chr1_2:18670783-18670802 | Msa0060790:intron | 40.0% | |
TATCATACTATCCGTACCCA+TGG | - | chr1_2:18670813-18670832 | Msa0060790:intron | 40.0% | |
ATCATACTATCCGTACCCAT+GGG | - | chr1_2:18670814-18670833 | Msa0060790:intron | 40.0% | |
! | GTCTGAAATAGGGATGTCAA+TGG | + | chr1_2:18670843-18670862 | None:intergenic | 40.0% |
GTTTGTGCACAATCAGTCAA+GGG | + | chr1_2:18670929-18670948 | None:intergenic | 40.0% | |
AGTTTGTGCACAATCAGTCA+AGG | + | chr1_2:18670930-18670949 | None:intergenic | 40.0% | |
TCTTTAGGTGGTTAGGGATT+TGG | + | chr1_2:18670955-18670974 | None:intergenic | 40.0% | |
!! | TCACTTTTGTCCTTTCGATG+TGG | + | chr1_2:18670985-18671004 | None:intergenic | 40.0% |
TGAAGTAACAAACAAGTGGG+TGG | - | chr1_2:18671002-18671021 | Msa0060790:intron | 40.0% | |
AGGGAGTGGAAATCCTATAT+CGG | - | chr1_2:18671106-18671125 | Msa0060790:intron | 40.0% | |
ATTGGATGCTTCTCCGATAT+AGG | + | chr1_2:18671122-18671141 | None:intergenic | 40.0% | |
!! | TCGGAGAAGCATCCAATAAA+AGG | - | chr1_2:18671125-18671144 | Msa0060790:intron | 40.0% |
! | AATCCTAGTGAAGGTGTGAA+AGG | + | chr1_2:18671175-18671194 | None:intergenic | 40.0% |
! | TCACACCTTCACTAGGATTT+TGG | - | chr1_2:18671176-18671195 | Msa0060790:intron | 40.0% |
! | CTTCTTTCATGTGGGTTATC+GGG | + | chr1_2:18671228-18671247 | None:intergenic | 40.0% |
! | GCTTCTTTCATGTGGGTTAT+CGG | + | chr1_2:18671229-18671248 | None:intergenic | 40.0% |
ATCAACCAAAGAGGGTAAAG+TGG | + | chr1_2:18671563-18671582 | None:intergenic | 40.0% | |
CTCTTCATCCCTTTCTTAGA+AGG | + | chr1_2:18671646-18671665 | None:intergenic | 40.0% | |
TATATTTGGGAGTGGTAGCT+AGG | + | chr1_2:18671776-18671795 | None:intergenic | 40.0% | |
! | GACTAGTGGGAAAGGTATAA+TGG | + | chr1_2:18672174-18672193 | None:intergenic | 40.0% |
TATGGATGTGGAAGACTAGT+GGG | + | chr1_2:18672187-18672206 | None:intergenic | 40.0% | |
ATATGGATGTGGAAGACTAG+TGG | + | chr1_2:18672188-18672207 | None:intergenic | 40.0% | |
CTTCCACATCCATATGTTAG+AGG | - | chr1_2:18672193-18672212 | Msa0060790:CDS | 40.0% | |
ACTCAACAAGTGAGTGAGTA+CGG | - | chr1_2:18672342-18672361 | Msa0060790:CDS | 40.0% | |
TAACAGCACGACAAGGGTTA+AGG | + | chr1_2:18668582-18668601 | None:intergenic | 45.0% | |
TCATGTTCAAGAAGGTGGTG+CGG | - | chr1_2:18668653-18668672 | Msa0060790:intron | 45.0% | |
CTCTTGTCACCACATTCTTC+TGG | + | chr1_2:18668719-18668738 | None:intergenic | 45.0% | |
CAGAAGAATGTGGTGACAAG+AGG | - | chr1_2:18668717-18668736 | Msa0060790:intron | 45.0% | |
! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_2:18669121-18669140 | Msa0060790:intron | 45.0% |
ACATCATGGCCTCTTGAAGA+TGG | - | chr1_2:18669169-18669188 | Msa0060790:intron | 45.0% | |
TTCTACAGACATGCGTCGAA+TGG | - | chr1_2:18669204-18669223 | Msa0060790:intron | 45.0% | |
! | TTGGGGCATCCTTGACTTTA+AGG | + | chr1_2:18669862-18669881 | None:intergenic | 45.0% |
! | TAGGAAGCTAGTGAGCATTG+GGG | + | chr1_2:18669879-18669898 | None:intergenic | 45.0% |
CTTAGGAAGCTAGTGAGCAT+TGG | + | chr1_2:18669881-18669900 | None:intergenic | 45.0% | |
AAAAAAGACACGCCGTAACG+AGG | - | chr1_2:18669928-18669947 | Msa0060790:intron | 45.0% | |
! | TGGCCTTTCTTTGGTTGGTT+GGG | + | chr1_2:18669973-18669992 | None:intergenic | 45.0% |
ATGGCCTTTCTTTGGTTGGT+TGG | + | chr1_2:18669974-18669993 | None:intergenic | 45.0% | |
TCTGAAAGTCTCGCAATGAG+CGG | + | chr1_2:18670152-18670171 | None:intergenic | 45.0% | |
CATTGCGAGACTTTCAGACT+AGG | - | chr1_2:18670154-18670173 | Msa0060790:intron | 45.0% | |
TTGCGAGACTTTCAGACTAG+GGG | - | chr1_2:18670156-18670175 | Msa0060790:intron | 45.0% | |
TATTGGGTATGGATACCCGT+GGG | + | chr1_2:18670332-18670351 | None:intergenic | 45.0% | |
TTATTGGGTATGGATACCCG+TGG | + | chr1_2:18670333-18670352 | None:intergenic | 45.0% | |
CAAAAATCCATGGGTACCCA+TGG | - | chr1_2:18670686-18670705 | Msa0060790:intron | 45.0% | |
AGGTATCCATGGGTATCCAT+GGG | + | chr1_2:18670705-18670724 | None:intergenic | 45.0% | |
TCATATTTATCCAACGGGGC+GGG | - | chr1_2:18670784-18670803 | Msa0060790:intron | 45.0% | |
! | GTGAAGGTGTGAAAGGTCTT+TGG | + | chr1_2:18671168-18671187 | None:intergenic | 45.0% |
AGACCTTTCACACCTTCACT+AGG | - | chr1_2:18671169-18671188 | Msa0060790:intron | 45.0% | |
CAACCAACACTTAACCCTCT+AGG | - | chr1_2:18671443-18671462 | Msa0060790:intron | 45.0% | |
CTTCCTAGAGGGTTAAGTGT+TGG | + | chr1_2:18671449-18671468 | None:intergenic | 45.0% | |
GGATGAGTTTGATGTAGCGT+TGG | + | chr1_2:18671488-18671507 | None:intergenic | 45.0% | |
ATGTGGAAGACTAGTGGGAA+AGG | + | chr1_2:18672182-18672201 | None:intergenic | 45.0% | |
CTCCCTCTAACATATGGATG+TGG | + | chr1_2:18672199-18672218 | None:intergenic | 45.0% | |
CTGACACTCCCTCTAACATA+TGG | + | chr1_2:18672205-18672224 | None:intergenic | 45.0% | |
ATGTTCTTGCAGATGACCAC+TGG | - | chr1_2:18672430-18672449 | Msa0060790:CDS | 45.0% | |
TGTTCTTGCAGATGACCACT+GGG | - | chr1_2:18672431-18672450 | Msa0060790:CDS | 45.0% | |
TTACATATGAAAGCCGGGGA+AGG | + | chr1_2:18672468-18672487 | None:intergenic | 45.0% | |
AGGGCTTACATATGAAAGCC+GGG | + | chr1_2:18672473-18672492 | None:intergenic | 45.0% | |
GAGGGCTTACATATGAAAGC+CGG | + | chr1_2:18672474-18672493 | None:intergenic | 45.0% | |
!!! | GTTTTTTTATATTTATATTA+TGG | - | chr1_2:18669362-18669381 | Msa0060790:intron | 5.0% |
!!! | TTTGAATTTATTTATTTTTT+TGG | + | chr1_2:18670670-18670689 | None:intergenic | 5.0% |
! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_2:18669122-18669141 | Msa0060790:intron | 50.0% |
! | ACTTGGAGACGGGTGTCATA+TGG | - | chr1_2:18669132-18669151 | Msa0060790:intron | 50.0% |
ATGCTGATGACATGTGCCCT+AGG | - | chr1_2:18669388-18669407 | Msa0060790:intron | 50.0% | |
TGCTGATGACATGTGCCCTA+GGG | - | chr1_2:18669389-18669408 | Msa0060790:intron | 50.0% | |
! | TTCTTTGGTTGGTTGGGTGC+TGG | + | chr1_2:18669967-18669986 | None:intergenic | 50.0% |
GCACCCAACCAACCAAAGAA+AGG | - | chr1_2:18669967-18669986 | Msa0060790:intron | 50.0% | |
AGGGATGGCCTTTCTTTGGT+TGG | + | chr1_2:18669978-18669997 | None:intergenic | 50.0% | |
GGCAAAAATACCCATGCCCA+CGG | - | chr1_2:18670180-18670199 | Msa0060790:intron | 50.0% | |
GCAAAAATACCCATGCCCAC+GGG | - | chr1_2:18670181-18670200 | Msa0060790:intron | 50.0% | |
! | TTTTACCCACGGATACCCGT+GGG | + | chr1_2:18670199-18670218 | None:intergenic | 50.0% |
! | ATTTTACCCACGGATACCCG+TGG | + | chr1_2:18670200-18670219 | None:intergenic | 50.0% |
TCCGTGGGTAAAATCCGTCA+CGG | - | chr1_2:18670206-18670225 | Msa0060790:intron | 50.0% | |
GTAAAATCCGTCACGGGCAT+GGG | - | chr1_2:18670213-18670232 | Msa0060790:intron | 50.0% | |
TAAAATCCGTCACGGGCATG+GGG | - | chr1_2:18670214-18670233 | Msa0060790:intron | 50.0% | |
GGTAGCTAAACGGGTATCCA+CGG | - | chr1_2:18670239-18670258 | Msa0060790:intron | 50.0% | |
GTAGCTAAACGGGTATCCAC+GGG | - | chr1_2:18670240-18670259 | Msa0060790:intron | 50.0% | |
! | GAGGTATCCATGGGTATCCA+TGG | + | chr1_2:18670706-18670725 | None:intergenic | 50.0% |
!! | GCGGGTATTGAGGTATCCAT+GGG | + | chr1_2:18670715-18670734 | None:intergenic | 50.0% |
CATGGATACCTCAATACCCG+CGG | - | chr1_2:18670714-18670733 | Msa0060790:intron | 50.0% | |
ATGGATACCTCAATACCCGC+GGG | - | chr1_2:18670715-18670734 | Msa0060790:intron | 50.0% | |
CATATTTATCCAACGGGGCG+GGG | - | chr1_2:18670785-18670804 | Msa0060790:intron | 50.0% | |
TCAATGGGTACCCATGGGTA+CGG | + | chr1_2:18670827-18670846 | None:intergenic | 50.0% | |
GGATGTCAATGGGTACCCAT+GGG | + | chr1_2:18670832-18670851 | None:intergenic | 50.0% | |
! | TCAGTCAAGGGTTGGCAACT+AGG | + | chr1_2:18670917-18670936 | None:intergenic | 50.0% |
GTGCACAATCAGTCAAGGGT+TGG | + | chr1_2:18670925-18670944 | None:intergenic | 50.0% | |
!! | GATGTAGCGTTGGTCACTAC+CGG | + | chr1_2:18671478-18671497 | None:intergenic | 50.0% |
! | GGAAGCCACTTTACCCTCTT+TGG | - | chr1_2:18671555-18671574 | Msa0060790:intron | 50.0% |
TGCTAGCAGACAAATGCAGC+AGG | - | chr1_2:18671741-18671760 | Msa0060790:intron | 50.0% | |
AAGGTAGGGCAAAAACCCAG+TGG | + | chr1_2:18672449-18672468 | None:intergenic | 50.0% | |
TATGAAAGCCGGGGAAGGTA+GGG | + | chr1_2:18672463-18672482 | None:intergenic | 50.0% | |
ATATGAAAGCCGGGGAAGGT+AGG | + | chr1_2:18672464-18672483 | None:intergenic | 50.0% | |
GGGCTTACATATGAAAGCCG+GGG | + | chr1_2:18672472-18672491 | None:intergenic | 50.0% | |
! | GTGAGTGTTTGGGGCAAACC+TGG | + | chr1_2:18669325-18669344 | None:intergenic | 55.0% |
AAAGACACGCCGTAACGAGG+AGG | - | chr1_2:18669931-18669950 | Msa0060790:intron | 55.0% | |
GTGCAGGGATGGCCTTTCTT+TGG | + | chr1_2:18669982-18670001 | None:intergenic | 55.0% | |
AGCCGACATCGTTGGGTGAT+GGG | + | chr1_2:18670010-18670029 | None:intergenic | 55.0% | |
GTGTTGGAGCCGACATCGTT+GGG | + | chr1_2:18670017-18670036 | None:intergenic | 55.0% | |
TGTGTTGGAGCCGACATCGT+TGG | + | chr1_2:18670018-18670037 | None:intergenic | 55.0% | |
CGCAATGAGCGGATCTTCTC+TGG | + | chr1_2:18670141-18670160 | None:intergenic | 55.0% | |
CGAGACTTTCAGACTAGGGG+TGG | - | chr1_2:18670159-18670178 | Msa0060790:intron | 55.0% | |
!!! | CCCGTGACGGATTTTACCCA+CGG | + | chr1_2:18670210-18670229 | None:intergenic | 55.0% |
CCGTGGGTAAAATCCGTCAC+GGG | - | chr1_2:18670207-18670226 | Msa0060790:intron | 55.0% | |
GGTAAAATCCGTCACGGGCA+TGG | - | chr1_2:18670212-18670231 | Msa0060790:intron | 55.0% | |
GGTATGGATACCCGTGGGTA+TGG | + | chr1_2:18670327-18670346 | None:intergenic | 55.0% | |
TGGGTATCCATGGGTACCCA+TGG | + | chr1_2:18670696-18670715 | None:intergenic | 55.0% | |
TGGGTACCCATGGATACCCA+TGG | - | chr1_2:18670696-18670715 | Msa0060790:intron | 55.0% | |
!! | CGCGGGTATTGAGGTATCCA+TGG | + | chr1_2:18670716-18670735 | None:intergenic | 55.0% |
GGGATGTCAATGGGTACCCA+TGG | + | chr1_2:18670833-18670852 | None:intergenic | 55.0% | |
! | ATGTGGGTTATCGGGTCGTG+GGG | + | chr1_2:18671220-18671239 | None:intergenic | 55.0% |
! | CATGTGGGTTATCGGGTCGT+GGG | + | chr1_2:18671221-18671240 | None:intergenic | 55.0% |
! | TCATGTGGGTTATCGGGTCG+TGG | + | chr1_2:18671222-18671241 | None:intergenic | 55.0% |
! | ACCCTCTAGGAAGCACGAAC+CGG | - | chr1_2:18671456-18671475 | Msa0060790:intron | 55.0% |
!! | ACCGGTTCGTGCTTCCTAGA+GGG | + | chr1_2:18671460-18671479 | None:intergenic | 55.0% |
!! | TACCGGTTCGTGCTTCCTAG+AGG | + | chr1_2:18671461-18671480 | None:intergenic | 55.0% |
! | GGTTTTTGCCCTACCTTCCC+CGG | - | chr1_2:18672452-18672471 | Msa0060790:CDS | 55.0% |
ACACGCCGTAACGAGGAGGA+CGG | - | chr1_2:18669935-18669954 | Msa0060790:intron | 60.0% | |
GTTGGCCGTCCTCCTCGTTA+CGG | + | chr1_2:18669943-18669962 | None:intergenic | 60.0% | |
!! | CGACATCGTTGGGTGATGGG+GGG | + | chr1_2:18670007-18670026 | None:intergenic | 60.0% |
! | CCGACATCGTTGGGTGATGG+GGG | + | chr1_2:18670008-18670027 | None:intergenic | 60.0% |
CCCCCATCACCCAACGATGT+CGG | - | chr1_2:18670005-18670024 | Msa0060790:intron | 60.0% | |
GCCGACATCGTTGGGTGATG+GGG | + | chr1_2:18670009-18670028 | None:intergenic | 60.0% | |
GAGCCGACATCGTTGGGTGA+TGG | + | chr1_2:18670011-18670030 | None:intergenic | 60.0% | |
GCATGGGGCGGGTAGCTAAA+CGG | - | chr1_2:18670229-18670248 | Msa0060790:intron | 60.0% | |
CATGGGGCGGGTAGCTAAAC+GGG | - | chr1_2:18670230-18670249 | Msa0060790:intron | 60.0% | |
CTCGTGGGTACCCACTATGC+GGG | + | chr1_2:18670743-18670762 | None:intergenic | 60.0% | |
CCTCGTGGGTACCCACTATG+CGG | + | chr1_2:18670744-18670763 | None:intergenic | 60.0% | |
!! | CGCATAGTGGGTACCCACGA+GGG | - | chr1_2:18670742-18670761 | Msa0060790:intron | 60.0% |
AGTGGGTACCCACGAGGGTA+TGG | - | chr1_2:18670747-18670766 | Msa0060790:intron | 60.0% | |
! | GTGGGTACCCACGAGGGTAT+GGG | - | chr1_2:18670748-18670767 | Msa0060790:intron | 60.0% |
! | TGGGTACCCACGAGGGTATG+GGG | - | chr1_2:18670749-18670768 | Msa0060790:intron | 60.0% |
TTTATCCAACGGGGCGGGGA+CGG | - | chr1_2:18670789-18670808 | Msa0060790:intron | 60.0% | |
!! | GGTTGGTTGGGTGCTGGCGT+TGG | + | chr1_2:18669961-18669980 | None:intergenic | 65.0% |
GATGGGGGGTAGTGCAGGGA+TGG | + | chr1_2:18669993-18670012 | None:intergenic | 65.0% | |
!! | GGGTGATGGGGGGTAGTGCA+GGG | + | chr1_2:18669997-18670016 | None:intergenic | 65.0% |
!! | TGGGTGATGGGGGGTAGTGC+AGG | + | chr1_2:18669998-18670017 | None:intergenic | 65.0% |
CCACGGATACCCGTGGGCAT+GGG | + | chr1_2:18670193-18670212 | None:intergenic | 65.0% | |
CCATGCCCACGGGTATCCGT+GGG | - | chr1_2:18670191-18670210 | Msa0060790:intron | 65.0% | |
AATCCGTCACGGGCATGGGG+CGG | - | chr1_2:18670217-18670236 | Msa0060790:intron | 65.0% | |
ACCCACTATGCGGGTACCCG+CGG | + | chr1_2:18670734-18670753 | None:intergenic | 65.0% | |
!! | CCGCATAGTGGGTACCCACG+AGG | - | chr1_2:18670741-18670760 | Msa0060790:intron | 65.0% |
! | GTACCCACGAGGGTATGGGG+CGG | - | chr1_2:18670752-18670771 | Msa0060790:intron | 65.0% |
! | TACCCACGAGGGTATGGGGC+GGG | - | chr1_2:18670753-18670772 | Msa0060790:intron | 65.0% |
TACCCGCCCCATACCCTCGT+GGG | + | chr1_2:18670758-18670777 | None:intergenic | 65.0% | |
! | ACGAGGGTATGGGGCGGGTA+CGG | - | chr1_2:18670758-18670777 | Msa0060790:intron | 65.0% |
TTATCCAACGGGGCGGGGAC+GGG | - | chr1_2:18670790-18670809 | Msa0060790:intron | 65.0% | |
CCCATGCCCACGGGTATCCG+TGG | - | chr1_2:18670190-18670209 | Msa0060790:intron | 70.0% | |
CCCACGGATACCCGTGGGCA+TGG | + | chr1_2:18670194-18670213 | None:intergenic | 70.0% | |
ATCCGTCACGGGCATGGGGC+GGG | - | chr1_2:18670218-18670237 | Msa0060790:intron | 70.0% | |
TACCCGCCCCATGCCCGTGA+CGG | + | chr1_2:18670223-18670242 | None:intergenic | 70.0% | |
! | GCGGGTACCCGCGGGTATTG+AGG | + | chr1_2:18670725-18670744 | None:intergenic | 70.0% |
ACCCGCGGGTACCCGCATAG+TGG | - | chr1_2:18670729-18670748 | Msa0060790:intron | 70.0% | |
CCCACTATGCGGGTACCCGC+GGG | + | chr1_2:18670733-18670752 | None:intergenic | 70.0% | |
CCCGCGGGTACCCGCATAGT+GGG | - | chr1_2:18670730-18670749 | Msa0060790:intron | 70.0% | |
GTACCCGCCCCATACCCTCG+TGG | + | chr1_2:18670759-18670778 | None:intergenic | 70.0% | |
! | CGAGGGTATGGGGCGGGTAC+GGG | - | chr1_2:18670759-18670778 | Msa0060790:intron | 70.0% |
GATACCCGTCCCCGCCCCGT+TGG | + | chr1_2:18670797-18670816 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 18668572 | 18672530 | 18668572 | ID=Msa0060790;Name=Msa0060790 |
chr1_2 | mRNA | 18668572 | 18672530 | 18668572 | ID=Msa0060790-mRNA-1;Parent=Msa0060790;Name=Msa0060790-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.5|1|1|2|0|268 |
chr1_2 | exon | 18671813 | 18672530 | 18671813 | ID=Msa0060790-mRNA-1:exon:7248;Parent=Msa0060790-mRNA-1 |
chr1_2 | exon | 18668572 | 18668660 | 18668572 | ID=Msa0060790-mRNA-1:exon:7247;Parent=Msa0060790-mRNA-1 |
chr1_2 | CDS | 18671813 | 18672530 | 18671813 | ID=Msa0060790-mRNA-1:cds;Parent=Msa0060790-mRNA-1 |
chr1_2 | CDS | 18668572 | 18668660 | 18668572 | ID=Msa0060790-mRNA-1:cds;Parent=Msa0060790-mRNA-1 |
Gene Sequence |
Protein sequence |