Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060790 | AES59897.2 | 75.214 | 234 | 49 | 7 | 15 | 243 | 15 | 244 | 4.26e-105 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060790 | G7I977 | 75.214 | 234 | 49 | 7 | 15 | 243 | 15 | 244 | 2.03e-105 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060790 | Msa0152110 | 0.899673 | 1.569497e-77 | -8.615850e-47 |
| Msa0060790 | Msa0229630 | 0.822711 | 2.046243e-53 | -8.615850e-47 |
| Msa0060790 | Msa0968410 | 0.883731 | 3.499389e-71 | -8.615850e-47 |
| Msa0060790 | Msa0968430 | 0.855389 | 6.519298e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060790 | MtrunA17_Chr1g0160761 | 72.385 | 239 | 54 | 5 | 1 | 232 | 1 | 234 | 1.48e-107 | 325 |
| Msa0060790 | MtrunA17_Chr1g0160711 | 75.000 | 228 | 49 | 6 | 21 | 243 | 17 | 241 | 1.66e-107 | 324 |
| Msa0060790 | MtrunA17_Chr1g0160721 | 62.295 | 244 | 79 | 5 | 1 | 242 | 12 | 244 | 3.46e-88 | 275 |
| Msa0060790 | MtrunA17_Chr1g0160661 | 59.016 | 244 | 87 | 5 | 1 | 242 | 27 | 259 | 1.76e-84 | 260 |
| Msa0060790 | MtrunA17_Chr1g0160561 | 54.331 | 254 | 94 | 8 | 2 | 241 | 7 | 252 | 3.92e-75 | 241 |
| Msa0060790 | MtrunA17_Chr1g0160701 | 59.402 | 234 | 72 | 11 | 17 | 238 | 32 | 254 | 1.32e-69 | 226 |
| Msa0060790 | MtrunA17_Chr1g0157791 | 34.783 | 253 | 132 | 11 | 7 | 237 | 6 | 247 | 4.66e-29 | 115 |
| Msa0060790 | MtrunA17_Chr1g0158061 | 35.000 | 220 | 121 | 9 | 28 | 234 | 29 | 239 | 1.50e-28 | 110 |
| Msa0060790 | MtrunA17_Chr1g0157961 | 35.268 | 224 | 124 | 8 | 24 | 234 | 33 | 248 | 3.18e-27 | 107 |
| Msa0060790 | MtrunA17_Chr1g0157991 | 35.526 | 228 | 122 | 8 | 24 | 234 | 28 | 247 | 7.67e-27 | 109 |
| Msa0060790 | MtrunA17_Chr1g0158151 | 34.496 | 258 | 135 | 13 | 1 | 234 | 1 | 248 | 1.33e-26 | 108 |
| Msa0060790 | MtrunA17_Chr1g0158191 | 33.852 | 257 | 121 | 14 | 10 | 233 | 4 | 244 | 1.95e-26 | 108 |
| Msa0060790 | MtrunA17_Chr3g0088331 | 33.628 | 226 | 116 | 9 | 24 | 234 | 36 | 242 | 2.79e-25 | 101 |
| Msa0060790 | MtrunA17_Chr1g0158411 | 32.287 | 223 | 120 | 8 | 26 | 234 | 46 | 251 | 1.95e-23 | 99.4 |
| Msa0060790 | MtrunA17_Chr1g0158041 | 33.040 | 227 | 125 | 8 | 26 | 234 | 28 | 245 | 1.90e-22 | 96.7 |
| Msa0060790 | MtrunA17_Chr1g0157881 | 29.861 | 288 | 129 | 12 | 8 | 234 | 34 | 309 | 3.74e-22 | 95.9 |
| Msa0060790 | MtrunA17_Chr1g0158761 | 32.114 | 246 | 127 | 11 | 1 | 234 | 1 | 218 | 7.80e-22 | 94.7 |
| Msa0060790 | MtrunA17_Chr6g0467711 | 32.812 | 256 | 128 | 13 | 3 | 234 | 12 | 247 | 1.16e-21 | 94.4 |
| Msa0060790 | MtrunA17_Chr1g0158461 | 29.104 | 268 | 146 | 11 | 1 | 234 | 17 | 274 | 1.64e-21 | 91.7 |
| Msa0060790 | MtrunA17_Chr1g0158731 | 29.960 | 247 | 144 | 10 | 4 | 234 | 8 | 241 | 4.25e-21 | 90.5 |
| Msa0060790 | MtrunA17_Chr1g0158541 | 32.794 | 247 | 137 | 11 | 5 | 234 | 16 | 250 | 2.01e-19 | 87.8 |
| Msa0060790 | MtrunA17_Chr1g0157861 | 27.645 | 293 | 134 | 14 | 26 | 257 | 37 | 312 | 5.22e-19 | 86.7 |
| Msa0060790 | MtrunA17_Chr1g0158331 | 29.434 | 265 | 142 | 13 | 1 | 234 | 17 | 267 | 5.89e-19 | 85.1 |
| Msa0060790 | MtrunA17_Chr1g0158661 | 28.980 | 245 | 136 | 9 | 7 | 232 | 17 | 242 | 2.67e-18 | 84.3 |
| Msa0060790 | MtrunA17_Chr1g0157911 | 30.435 | 230 | 124 | 11 | 27 | 234 | 35 | 250 | 5.39e-18 | 83.6 |
| Msa0060790 | MtrunA17_Chr1g0158631 | 28.623 | 276 | 142 | 13 | 7 | 254 | 17 | 265 | 9.95e-18 | 82.8 |
| Msa0060790 | MtrunA17_Chr1g0158121 | 48.148 | 81 | 36 | 2 | 24 | 103 | 29 | 104 | 4.35e-15 | 70.5 |
| Msa0060790 | MtrunA17_Chr1g0158301 | 28.800 | 250 | 145 | 11 | 1 | 234 | 16 | 248 | 1.08e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | 1_2:-18672196 | Msa0060790:CDS |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | 1_2:-18672195 | Msa0060790:CDS |
| CATTATTGTCCTCACATAAT+AGG | 0.236387 | 1_2:+18672335 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | 1_2:-18672245 | Msa0060790:CDS |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | 1_2:+18672364 | None:intergenic |
| TTTATGGATTTGAACTTTCA+TGG | 0.314825 | 1_2:-18671850 | Msa0060790:CDS |
| CTCAATAGTCTTTGTAATGA+TGG | 0.335428 | 1_2:-18671827 | Msa0060790:CDS |
| TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | 1_2:+18672190 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 1_2:-18671965 | Msa0060790:CDS |
| TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | 1_2:+18668581 | None:intergenic |
| ATGTTCTTGCAGATGACCAC+TGG | 0.375087 | 1_2:-18668650 | Msa0060790:intron |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 1_2:-18671958 | Msa0060790:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 1_2:-18671948 | Msa0060790:CDS |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | 1_2:+18672134 | None:intergenic |
| TAACAGCACGACAAGGGTTA+AGG | 0.463192 | 1_2:+18672501 | None:intergenic |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | 1_2:-18671911 | Msa0060790:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | 1_2:-18671998 | Msa0060790:CDS |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | 1_2:-18672001 | Msa0060790:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 1_2:-18671959 | Msa0060790:CDS |
| AGGGCTTACATATGAAAGCC+GGG | 0.509438 | 1_2:+18668610 | None:intergenic |
| TATGAAAGCCGGGGAAGGTA+GGG | 0.509508 | 1_2:+18668620 | None:intergenic |
| ATATGAAAGCCGGGGAAGGT+AGG | 0.518798 | 1_2:+18668619 | None:intergenic |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | 1_2:+18672138 | None:intergenic |
| CGGTCGGAATATATTGATGA+AGG | 0.526826 | 1_2:-18672058 | Msa0060790:CDS |
| TGTTCTTGCAGATGACCACT+GGG | 0.531694 | 1_2:-18668649 | Msa0060790:intron |
| TTCTACAGACATGCGTCGAA+TGG | 0.543277 | 1_2:-18671876 | Msa0060790:CDS |
| GAGGGCTTACATATGAAAGC+CGG | 0.545576 | 1_2:+18668609 | None:intergenic |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | 1_2:+18672198 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | 1_2:-18671925 | Msa0060790:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | 1_2:+18672194 | None:intergenic |
| ATTGTAATCCAATAGTCGTA+TGG | 0.577306 | 1_2:+18672237 | None:intergenic |
| TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | 1_2:-18672466 | Msa0060790:CDS |
| AACAAGAGTCATGTTCAAGA+AGG | 0.596613 | 1_2:-18672435 | Msa0060790:CDS |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | 1_2:+18671902 | None:intergenic |
| AAGAGTCATGTTCAAGAAGG+TGG | 0.600098 | 1_2:-18672432 | Msa0060790:CDS |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | 1_2:+18672144 | None:intergenic |
| TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | 1_2:+18668590 | None:intergenic |
| TTACATATGAAAGCCGGGGA+AGG | 0.620719 | 1_2:+18668615 | None:intergenic |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | 1_2:-18672363 | Msa0060790:CDS |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | 1_2:+18672193 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | 1_2:+18672139 | None:intergenic |
| GTATTAGTAACAGCACGACA+AGG | 0.628217 | 1_2:+18672494 | None:intergenic |
| TCGGAATATATTGATGAAGG+TGG | 0.639500 | 1_2:-18672055 | Msa0060790:CDS |
| TATTAGTAACAGCACGACAA+GGG | 0.651789 | 1_2:+18672495 | None:intergenic |
| CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | 1_2:+18668591 | None:intergenic |
| TATGAATTTGAAGAACACCA+TGG | 0.674399 | 1_2:-18672298 | Msa0060790:CDS |
| GAGGTACAACCTATTATGTG+AGG | 0.678478 | 1_2:-18672344 | Msa0060790:CDS |
| TCATGTTCAAGAAGGTGGTG+CGG | 0.678993 | 1_2:-18672427 | Msa0060790:CDS |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 1_2:-18672373 | Msa0060790:CDS |
| GGGCTTACATATGAAAGCCG+GGG | 0.696923 | 1_2:+18668611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATATTTATATTAT+GGG | - | chr1_2:18669363-18669382 | Msa0060790:intron | 0.0% |
| !! | AAAAAAATAAAAATAAAAAT+AGG | + | chr1_2:18670464-18670483 | None:intergenic | 0.0% |
| !! | TTTCCAAATAAATTATATTT+GGG | - | chr1_2:18669793-18669812 | Msa0060790:intron | 10.0% |
| !! | CATTAAATTTAAAAGTAAAA+GGG | + | chr1_2:18672035-18672054 | None:intergenic | 10.0% |
| !! | GTTTCCAAATAAATTATATT+TGG | - | chr1_2:18669792-18669811 | Msa0060790:intron | 15.0% |
| !! | TTCCAAATAAATTATATTTG+GGG | - | chr1_2:18669794-18669813 | Msa0060790:intron | 15.0% |
| !!! | AGTTACTTGTTTTTTTTTTT+GGG | + | chr1_2:18669839-18669858 | None:intergenic | 15.0% |
| !! | AATTTACTTAACTCATTATT+GGG | + | chr1_2:18670348-18670367 | None:intergenic | 15.0% |
| !! | TAATTTACTTAACTCATTAT+TGG | + | chr1_2:18670349-18670368 | None:intergenic | 15.0% |
| !!! | TAAGAATCATAAATTTTCTA+TGG | - | chr1_2:18670550-18670569 | Msa0060790:intron | 15.0% |
| !!! | ATGATTTATGAAATTTTGAA+TGG | - | chr1_2:18670580-18670599 | Msa0060790:intron | 15.0% |
| !! | TAAATAAATTCAAAAATCCA+TGG | - | chr1_2:18670676-18670695 | Msa0060790:intron | 15.0% |
| !! | AAATAAATTCAAAAATCCAT+GGG | - | chr1_2:18670677-18670696 | Msa0060790:intron | 15.0% |
| !! | AAATGAAACTTCAAATATTT+CGG | - | chr1_2:18671534-18671553 | Msa0060790:intron | 15.0% |
| !!! | TGTTACATTTATTTAGTTTT+TGG | - | chr1_2:18671848-18671867 | Msa0060790:CDS | 15.0% |
| !! | GCATTAAATTTAAAAGTAAA+AGG | + | chr1_2:18672036-18672055 | None:intergenic | 15.0% |
| !! | GTAAATAAGAGAAAAATTAA+GGG | + | chr1_2:18672152-18672171 | None:intergenic | 15.0% |
| !! | TATATCCATTGTAAAAAAAT+TGG | - | chr1_2:18672377-18672396 | Msa0060790:CDS | 15.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | + | chr1_2:18668802-18668821 | None:intergenic | 20.0% |
| !!! | CTCTATTTGTTTTTTTTGAT+GGG | + | chr1_2:18669590-18669609 | None:intergenic | 20.0% |
| !!! | ACTCTATTTGTTTTTTTTGA+TGG | + | chr1_2:18669591-18669610 | None:intergenic | 20.0% |
| !! | TACCCCAAATATAATTTATT+TGG | + | chr1_2:18669799-18669818 | None:intergenic | 20.0% |
| !!! | GAGTTACTTGTTTTTTTTTT+TGG | + | chr1_2:18669840-18669859 | None:intergenic | 20.0% |
| !! | ACATCATAAAACATATTCTA+TGG | - | chr1_2:18670521-18670540 | Msa0060790:intron | 20.0% |
| !!! | TGTTTAAAAGTTGAAGTTTT+TGG | - | chr1_2:18670615-18670634 | Msa0060790:intron | 20.0% |
| !!! | ATATCATGTGTGTTTTTTTT+TGG | + | chr1_2:18671045-18671064 | None:intergenic | 20.0% |
| !! | AAAAAAAAACACACATGATA+TGG | - | chr1_2:18671044-18671063 | Msa0060790:intron | 20.0% |
| !! | TTCAATTTGAAGAGATTTAA+GGG | - | chr1_2:18671087-18671106 | Msa0060790:intron | 20.0% |
| !!! | TCATGTTTTTAAGGTATTTT+AGG | + | chr1_2:18671380-18671399 | None:intergenic | 20.0% |
| !! | CTTAAAAACATGATATATGA+CGG | - | chr1_2:18671387-18671406 | Msa0060790:intron | 20.0% |
| !! | AATTTGTATTGTATCAATGT+AGG | + | chr1_2:18671703-18671722 | None:intergenic | 20.0% |
| !!! | GAGCATGTATTTTTATATTT+GGG | + | chr1_2:18671789-18671808 | None:intergenic | 20.0% |
| !!! | TGAGCATGTATTTTTATATT+TGG | + | chr1_2:18671790-18671809 | None:intergenic | 20.0% |
| !!! | GAAGAAATTGAGATATTTTA+AGG | - | chr1_2:18671879-18671898 | Msa0060790:CDS | 20.0% |
| !!! | AGTATCTAGTTTAGTAATTT+TGG | + | chr1_2:18671966-18671985 | None:intergenic | 20.0% |
| !! | TACTAAACTAGATACTAAAA+TGG | - | chr1_2:18671970-18671989 | Msa0060790:CDS | 20.0% |
| !! | TAGATACTAAAATGGATAAA+GGG | - | chr1_2:18671978-18671997 | Msa0060790:CDS | 20.0% |
| !! | GGTAAATAAGAGAAAAATTA+AGG | + | chr1_2:18672153-18672172 | None:intergenic | 20.0% |
| !! | TTCTATTACCATTTAGAAAT+TGG | - | chr1_2:18672285-18672304 | Msa0060790:CDS | 20.0% |
| !!! | AACTACCAATTTTTTTACAA+TGG | + | chr1_2:18672385-18672404 | None:intergenic | 20.0% |
| ! | TATATGTGAGCTGTAAAAAT+CGG | - | chr1_2:18669002-18669021 | Msa0060790:intron | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | chr1_2:18669109-18669128 | Msa0060790:intron | 25.0% |
| ! | TTTATGGATTTGAACTTTCA+TGG | - | chr1_2:18669230-18669249 | Msa0060790:intron | 25.0% |
| ! | GATATAATAGTACAAGAAGT+GGG | - | chr1_2:18669636-18669655 | Msa0060790:intron | 25.0% |
| !!! | TTGTCAAAATGGTCTTATTT+AGG | + | chr1_2:18669683-18669702 | None:intergenic | 25.0% |
| ! | GTTATGTATGTTTGTCAAAA+TGG | + | chr1_2:18669694-18669713 | None:intergenic | 25.0% |
| ! | TTTGACTACCCATTATTATA+TGG | - | chr1_2:18670277-18670296 | Msa0060790:intron | 25.0% |
| ! | TACCCATTATTATATGGATA+TGG | - | chr1_2:18670283-18670302 | Msa0060790:intron | 25.0% |
| ! | GTCCATATCCATATAATAAT+GGG | + | chr1_2:18670288-18670307 | None:intergenic | 25.0% |
| ! | TGTCCATATCCATATAATAA+TGG | + | chr1_2:18670289-18670308 | None:intergenic | 25.0% |
| ! | TTATTATATGGATATGGACA+TGG | - | chr1_2:18670289-18670308 | Msa0060790:intron | 25.0% |
| ! | TAAAGTTGTTACCTTATTGA+AGG | - | chr1_2:18670402-18670421 | Msa0060790:intron | 25.0% |
| ! | ATTAATGAGAAATCTTAGGT+GGG | + | chr1_2:18670439-18670458 | None:intergenic | 25.0% |
| ! | TATTAATGAGAAATCTTAGG+TGG | + | chr1_2:18670440-18670459 | None:intergenic | 25.0% |
| ! | GGTTATTAATGAGAAATCTT+AGG | + | chr1_2:18670443-18670462 | None:intergenic | 25.0% |
| !!! | TAAAAGTTGAAGTTTTTGGT+AGG | - | chr1_2:18670619-18670638 | Msa0060790:intron | 25.0% |
| !!! | TGTGTTTTTTTTTGGTTTTG+CGG | + | chr1_2:18671037-18671056 | None:intergenic | 25.0% |
| ! | CTTCAATTTGAAGAGATTTA+AGG | - | chr1_2:18671086-18671105 | Msa0060790:intron | 25.0% |
| !! | TCAAAGTTATCACCTTTTAT+TGG | + | chr1_2:18671140-18671159 | None:intergenic | 25.0% |
| ! | ATAAAAGGTGATAACTTTGA+AGG | - | chr1_2:18671140-18671159 | Msa0060790:intron | 25.0% |
| !!! | CGTCATATATCATGTTTTTA+AGG | + | chr1_2:18671389-18671408 | None:intergenic | 25.0% |
| !!! | ATTTGAAGTTTCATTTTGCA+GGG | + | chr1_2:18671530-18671549 | None:intergenic | 25.0% |
| !!! | TATTTGAAGTTTCATTTTGC+AGG | + | chr1_2:18671531-18671550 | None:intergenic | 25.0% |
| !! | AAATCACTTGGGATTTTATT+GGG | + | chr1_2:18671678-18671697 | None:intergenic | 25.0% |
| !!! | TGTATTTTTATATTTGGGAG+TGG | + | chr1_2:18671784-18671803 | None:intergenic | 25.0% |
| ! | CTAGATACTAAAATGGATAA+AGG | - | chr1_2:18671977-18671996 | Msa0060790:CDS | 25.0% |
| ! | AGATACTAAAATGGATAAAG+GGG | - | chr1_2:18671979-18671998 | Msa0060790:CDS | 25.0% |
| !! | AAATGCAACTTTTATCTAGT+GGG | - | chr1_2:18672076-18672095 | Msa0060790:CDS | 25.0% |
| ! | ATGTAACACCAATTTCTAAA+TGG | + | chr1_2:18672296-18672315 | None:intergenic | 25.0% |
| ! | TTTAGCATGTCTTGAATTAA+GGG | + | chr1_2:18672502-18672521 | None:intergenic | 25.0% |
| !! | TTTTAGCATGTCTTGAATTA+AGG | + | chr1_2:18672503-18672522 | None:intergenic | 25.0% |
| CATTATTGTCCTCACATAAT+AGG | + | chr1_2:18668748-18668767 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | - | chr1_2:18668782-18668801 | Msa0060790:intron | 30.0% | |
| ATTGTAATCCAATAGTCGTA+TGG | + | chr1_2:18668846-18668865 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | + | chr1_2:18668885-18668904 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | - | chr1_2:18668884-18668903 | Msa0060790:intron | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | - | chr1_2:18668885-18668904 | Msa0060790:intron | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | + | chr1_2:18668893-18668912 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | + | chr1_2:18668944-18668963 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | + | chr1_2:18668949-18668968 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | - | chr1_2:18669079-18669098 | Msa0060790:intron | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | chr1_2:18669111-18669130 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | chr1_2:18669108-18669127 | Msa0060790:intron | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | chr1_2:18669155-18669174 | Msa0060790:intron | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | + | chr1_2:18669181-18669200 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+TGG | - | chr1_2:18669253-18669272 | Msa0060790:intron | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+GGG | + | chr1_2:18669334-18669353 | None:intergenic | 30.0% | |
| GTAAAGTAAAGTGAGTGTTT+GGG | + | chr1_2:18669335-18669354 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | - | chr1_2:18669334-18669353 | Msa0060790:intron | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | - | chr1_2:18669504-18669523 | Msa0060790:intron | 30.0% |
| CGATATAATAGTACAAGAAG+TGG | - | chr1_2:18669635-18669654 | Msa0060790:intron | 30.0% | |
| AGAAGTGGGAAATACTTATA+TGG | - | chr1_2:18669650-18669669 | Msa0060790:intron | 30.0% | |
| ! | GCTTTCTTTTACATGATTTC+AGG | + | chr1_2:18669908-18669927 | None:intergenic | 30.0% |
| ACTTAACTCATTATTGGGTA+TGG | + | chr1_2:18670343-18670362 | None:intergenic | 30.0% | |
| CGGTAAAATTTCCTTCAATA+AGG | + | chr1_2:18670416-18670435 | None:intergenic | 30.0% | |
| TGATGTGAATGAAGTGAAAA+TGG | + | chr1_2:18670507-18670526 | None:intergenic | 30.0% | |
| !! | TGTTTGGTTTGACTTTAGTT+TGG | + | chr1_2:18670884-18670903 | None:intergenic | 30.0% |
| ! | ACTAGGTAGTAGTTTTTGTT+TGG | + | chr1_2:18670900-18670919 | None:intergenic | 30.0% |
| ATTTCATCTTTAGGTGGTTA+GGG | + | chr1_2:18670961-18670980 | None:intergenic | 30.0% | |
| TATTTCATCTTTAGGTGGTT+AGG | + | chr1_2:18670962-18670981 | None:intergenic | 30.0% | |
| AAAGTGAAGTAACAAACAAG+TGG | - | chr1_2:18670998-18671017 | Msa0060790:intron | 30.0% | |
| AAGTGAAGTAACAAACAAGT+GGG | - | chr1_2:18670999-18671018 | Msa0060790:intron | 30.0% | |
| ! | CATATTAGCTTCTTTCATGT+GGG | + | chr1_2:18671236-18671255 | None:intergenic | 30.0% |
| ACACTTTCAAGACCAAAAAT+CGG | - | chr1_2:18671287-18671306 | Msa0060790:intron | 30.0% | |
| AATCAAGTGTAGTTGATTGA+TGG | + | chr1_2:18671417-18671436 | None:intergenic | 30.0% | |
| GGAGATATTTGTTTGAGAAT+CGG | + | chr1_2:18671509-18671528 | None:intergenic | 30.0% | |
| AAATTCAGATCAACCAAAGA+GGG | + | chr1_2:18671571-18671590 | None:intergenic | 30.0% | |
| AAAATTCAGATCAACCAAAG+AGG | + | chr1_2:18671572-18671591 | None:intergenic | 30.0% | |
| !!! | CTTGTAATGCTGTTTTTAGT+TGG | + | chr1_2:18671609-18671628 | None:intergenic | 30.0% |
| ! | AATCACTTGGGATTTTATTG+GGG | + | chr1_2:18671677-18671696 | None:intergenic | 30.0% |
| ! | GAAATCACTTGGGATTTTAT+TGG | + | chr1_2:18671679-18671698 | None:intergenic | 30.0% |
| ! | GAAATGCAACTTTTATCTAG+TGG | - | chr1_2:18672075-18672094 | Msa0060790:CDS | 30.0% |
| GCAAGAACATAGAAAAAAGA+TGG | + | chr1_2:18672420-18672439 | None:intergenic | 30.0% | |
| TATTAGTAACAGCACGACAA+GGG | + | chr1_2:18668588-18668607 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | chr1_2:18668645-18668664 | Msa0060790:intron | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | chr1_2:18668681-18668700 | Msa0060790:intron | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | chr1_2:18668694-18668713 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | + | chr1_2:18668889-18668908 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | + | chr1_2:18668890-18668909 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | + | chr1_2:18668945-18668964 | None:intergenic | 35.0% | |
| TCGGAATATATTGATGAAGG+TGG | - | chr1_2:18669025-18669044 | Msa0060790:intron | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | - | chr1_2:18669082-18669101 | Msa0060790:intron | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | + | chr1_2:18669306-18669325 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | - | chr1_2:18669304-18669323 | Msa0060790:intron | 35.0% | |
| CGTAAAGTAAAGTGAGTGTT+TGG | + | chr1_2:18669336-18669355 | None:intergenic | 35.0% | |
| AATCTTTATCATGTGCCCTA+GGG | + | chr1_2:18669407-18669426 | None:intergenic | 35.0% | |
| ACACGCACACAACTTAAAAT+AGG | + | chr1_2:18669774-18669793 | None:intergenic | 35.0% | |
| CAAGTAACTCCTTAAAGTCA+AGG | - | chr1_2:18669850-18669869 | Msa0060790:intron | 35.0% | |
| ! | ACATGATTTCAGGTATGCTT+AGG | + | chr1_2:18669898-18669917 | None:intergenic | 35.0% |
| !! | TATTAGTGTTGGTCTTGTGT+TGG | + | chr1_2:18670033-18670052 | None:intergenic | 35.0% |
| ACAAGACCAACACTAATAGT+AGG | - | chr1_2:18670035-18670054 | Msa0060790:intron | 35.0% | |
| CATGTACCTACTATTAGTGT+TGG | + | chr1_2:18670044-18670063 | None:intergenic | 35.0% | |
| CAACACTAATAGTAGGTACA+TGG | - | chr1_2:18670042-18670061 | Msa0060790:intron | 35.0% | |
| !! | TATTGATCAGTTGGTAGACA+GGG | + | chr1_2:18670106-18670125 | None:intergenic | 35.0% |
| TTTGATTGTATCCATACCCA+CGG | - | chr1_2:18670313-18670332 | Msa0060790:intron | 35.0% | |
| CGGGTATCATATTTATCCAA+CGG | - | chr1_2:18670778-18670797 | Msa0060790:intron | 35.0% | |
| GGGTATCATATTTATCCAAC+GGG | - | chr1_2:18670779-18670798 | Msa0060790:intron | 35.0% | |
| GGTATCATATTTATCCAACG+GGG | - | chr1_2:18670780-18670799 | Msa0060790:intron | 35.0% | |
| ! | TCTGAAATAGGGATGTCAAT+GGG | + | chr1_2:18670842-18670861 | None:intergenic | 35.0% |
| ! | TGTATGGTGTGTCTGAAATA+GGG | + | chr1_2:18670853-18670872 | None:intergenic | 35.0% |
| ! | TTGTATGGTGTGTCTGAAAT+AGG | + | chr1_2:18670854-18670873 | None:intergenic | 35.0% |
| TTTCAGACACACCATACAAT+AGG | - | chr1_2:18670855-18670874 | Msa0060790:intron | 35.0% | |
| TAGTTTGGAAGCCTATTGTA+TGG | + | chr1_2:18670869-18670888 | None:intergenic | 35.0% | |
| TGTGGTATTTCATCTTTAGG+TGG | + | chr1_2:18670967-18670986 | None:intergenic | 35.0% | |
| CGATGTGGTATTTCATCTTT+AGG | + | chr1_2:18670970-18670989 | None:intergenic | 35.0% | |
| AGATGAAATACCACATCGAA+AGG | - | chr1_2:18670972-18670991 | Msa0060790:intron | 35.0% | |
| !!! | GTTTTTTTTTGGTTTTGCGG+AGG | + | chr1_2:18671034-18671053 | None:intergenic | 35.0% |
| TTTGAAGAGATTTAAGGGAG+TGG | - | chr1_2:18671092-18671111 | Msa0060790:intron | 35.0% | |
| AAAGACCAAAATCCTAGTGA+AGG | + | chr1_2:18671184-18671203 | None:intergenic | 35.0% | |
| !! | ACTAGGATTTTGGTCTTTTC+AGG | - | chr1_2:18671186-18671205 | Msa0060790:intron | 35.0% |
| ! | GCATATTAGCTTCTTTCATG+TGG | + | chr1_2:18671237-18671256 | None:intergenic | 35.0% |
| ! | TTGAAAGTGTGATTCTAGTG+AGG | + | chr1_2:18671277-18671296 | None:intergenic | 35.0% |
| CACTTTCAAGACCAAAAATC+GGG | - | chr1_2:18671288-18671307 | Msa0060790:intron | 35.0% | |
| ! | ATTTCATAGCACCCGATTTT+TGG | + | chr1_2:18671302-18671321 | None:intergenic | 35.0% |
| !! | TTTCTTAGAAGGTGTTGAGA+AGG | + | chr1_2:18671635-18671654 | None:intergenic | 35.0% |
| ! | TTCTCAACACCTTCTAAGAA+AGG | - | chr1_2:18671634-18671653 | Msa0060790:intron | 35.0% |
| ! | TCTCAACACCTTCTAAGAAA+GGG | - | chr1_2:18671635-18671654 | Msa0060790:intron | 35.0% |
| CAATGTAGGTGAAATCACTT+GGG | + | chr1_2:18671689-18671708 | None:intergenic | 35.0% | |
| TCAATGTAGGTGAAATCACT+TGG | + | chr1_2:18671690-18671709 | None:intergenic | 35.0% | |
| TTCCACATCCATATGTTAGA+GGG | - | chr1_2:18672194-18672213 | Msa0060790:CDS | 35.0% | |
| CTTGAATTAAGGGAATGTGA+GGG | + | chr1_2:18672492-18672511 | None:intergenic | 35.0% | |
| TCTTGAATTAAGGGAATGTG+AGG | + | chr1_2:18672493-18672512 | None:intergenic | 35.0% | |
| GTATTAGTAACAGCACGACA+AGG | + | chr1_2:18668589-18668608 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | - | chr1_2:18668614-18668633 | Msa0060790:CDS | 40.0% | |
| AAGAGTCATGTTCAAGAAGG+TGG | - | chr1_2:18668648-18668667 | Msa0060790:intron | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | chr1_2:18668695-18668714 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | chr1_2:18668698-18668717 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | chr1_2:18668707-18668726 | Msa0060790:intron | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | - | chr1_2:18668736-18668755 | Msa0060790:intron | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | - | chr1_2:18668835-18668854 | Msa0060790:intron | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | + | chr1_2:18668939-18668958 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | - | chr1_2:18668938-18668957 | Msa0060790:intron | 40.0% |
| TGTGAGCTGTAAAAATCGGT+CGG | - | chr1_2:18669006-18669025 | Msa0060790:intron | 40.0% | |
| CGGTCGGAATATATTGATGA+AGG | - | chr1_2:18669022-18669041 | Msa0060790:intron | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_2:18669115-18669134 | Msa0060790:intron | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | - | chr1_2:18669214-18669233 | Msa0060790:intron | 40.0% |
| GAATCTTTATCATGTGCCCT+AGG | + | chr1_2:18669408-18669427 | None:intergenic | 40.0% | |
| TTAGGAAGCTAGTGAGCATT+GGG | + | chr1_2:18669880-18669899 | None:intergenic | 40.0% | |
| TCGTCTTGGAAGTAGTTTCT+TGG | + | chr1_2:18670075-18670094 | None:intergenic | 40.0% | |
| ! | ACAGGGAGAAATTTTCGTCT+TGG | + | chr1_2:18670089-18670108 | None:intergenic | 40.0% |
| !! | CTATTGATCAGTTGGTAGAC+AGG | + | chr1_2:18670107-18670126 | None:intergenic | 40.0% |
| GTCTACCAACTGATCAATAG+AGG | - | chr1_2:18670107-18670126 | Msa0060790:intron | 40.0% | |
| GACAACCTCTATTGATCAGT+TGG | + | chr1_2:18670115-18670134 | None:intergenic | 40.0% | |
| ATTGCGAGACTTTCAGACTA+GGG | - | chr1_2:18670155-18670174 | Msa0060790:intron | 40.0% | |
| GGTATCCACGGGTATAATAA+CGG | - | chr1_2:18670251-18670270 | Msa0060790:intron | 40.0% | |
| GTATCCACGGGTATAATAAC+GGG | - | chr1_2:18670252-18670271 | Msa0060790:intron | 40.0% | |
| AATACCCGTTATTATACCCG+TGG | + | chr1_2:18670259-18670278 | None:intergenic | 40.0% | |
| TTGATTGTATCCATACCCAC+GGG | - | chr1_2:18670314-18670333 | Msa0060790:intron | 40.0% | |
| AATGAGAAATCTTAGGTGGG+CGG | + | chr1_2:18670436-18670455 | None:intergenic | 40.0% | |
| ATCATATTTATCCAACGGGG+CGG | - | chr1_2:18670783-18670802 | Msa0060790:intron | 40.0% | |
| TATCATACTATCCGTACCCA+TGG | - | chr1_2:18670813-18670832 | Msa0060790:intron | 40.0% | |
| ATCATACTATCCGTACCCAT+GGG | - | chr1_2:18670814-18670833 | Msa0060790:intron | 40.0% | |
| ! | GTCTGAAATAGGGATGTCAA+TGG | + | chr1_2:18670843-18670862 | None:intergenic | 40.0% |
| GTTTGTGCACAATCAGTCAA+GGG | + | chr1_2:18670929-18670948 | None:intergenic | 40.0% | |
| AGTTTGTGCACAATCAGTCA+AGG | + | chr1_2:18670930-18670949 | None:intergenic | 40.0% | |
| TCTTTAGGTGGTTAGGGATT+TGG | + | chr1_2:18670955-18670974 | None:intergenic | 40.0% | |
| !! | TCACTTTTGTCCTTTCGATG+TGG | + | chr1_2:18670985-18671004 | None:intergenic | 40.0% |
| TGAAGTAACAAACAAGTGGG+TGG | - | chr1_2:18671002-18671021 | Msa0060790:intron | 40.0% | |
| AGGGAGTGGAAATCCTATAT+CGG | - | chr1_2:18671106-18671125 | Msa0060790:intron | 40.0% | |
| ATTGGATGCTTCTCCGATAT+AGG | + | chr1_2:18671122-18671141 | None:intergenic | 40.0% | |
| !! | TCGGAGAAGCATCCAATAAA+AGG | - | chr1_2:18671125-18671144 | Msa0060790:intron | 40.0% |
| ! | AATCCTAGTGAAGGTGTGAA+AGG | + | chr1_2:18671175-18671194 | None:intergenic | 40.0% |
| ! | TCACACCTTCACTAGGATTT+TGG | - | chr1_2:18671176-18671195 | Msa0060790:intron | 40.0% |
| ! | CTTCTTTCATGTGGGTTATC+GGG | + | chr1_2:18671228-18671247 | None:intergenic | 40.0% |
| ! | GCTTCTTTCATGTGGGTTAT+CGG | + | chr1_2:18671229-18671248 | None:intergenic | 40.0% |
| ATCAACCAAAGAGGGTAAAG+TGG | + | chr1_2:18671563-18671582 | None:intergenic | 40.0% | |
| CTCTTCATCCCTTTCTTAGA+AGG | + | chr1_2:18671646-18671665 | None:intergenic | 40.0% | |
| TATATTTGGGAGTGGTAGCT+AGG | + | chr1_2:18671776-18671795 | None:intergenic | 40.0% | |
| ! | GACTAGTGGGAAAGGTATAA+TGG | + | chr1_2:18672174-18672193 | None:intergenic | 40.0% |
| TATGGATGTGGAAGACTAGT+GGG | + | chr1_2:18672187-18672206 | None:intergenic | 40.0% | |
| ATATGGATGTGGAAGACTAG+TGG | + | chr1_2:18672188-18672207 | None:intergenic | 40.0% | |
| CTTCCACATCCATATGTTAG+AGG | - | chr1_2:18672193-18672212 | Msa0060790:CDS | 40.0% | |
| ACTCAACAAGTGAGTGAGTA+CGG | - | chr1_2:18672342-18672361 | Msa0060790:CDS | 40.0% | |
| TAACAGCACGACAAGGGTTA+AGG | + | chr1_2:18668582-18668601 | None:intergenic | 45.0% | |
| TCATGTTCAAGAAGGTGGTG+CGG | - | chr1_2:18668653-18668672 | Msa0060790:intron | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | chr1_2:18668719-18668738 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | chr1_2:18668717-18668736 | Msa0060790:intron | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_2:18669121-18669140 | Msa0060790:intron | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | - | chr1_2:18669169-18669188 | Msa0060790:intron | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | - | chr1_2:18669204-18669223 | Msa0060790:intron | 45.0% | |
| ! | TTGGGGCATCCTTGACTTTA+AGG | + | chr1_2:18669862-18669881 | None:intergenic | 45.0% |
| ! | TAGGAAGCTAGTGAGCATTG+GGG | + | chr1_2:18669879-18669898 | None:intergenic | 45.0% |
| CTTAGGAAGCTAGTGAGCAT+TGG | + | chr1_2:18669881-18669900 | None:intergenic | 45.0% | |
| AAAAAAGACACGCCGTAACG+AGG | - | chr1_2:18669928-18669947 | Msa0060790:intron | 45.0% | |
| ! | TGGCCTTTCTTTGGTTGGTT+GGG | + | chr1_2:18669973-18669992 | None:intergenic | 45.0% |
| ATGGCCTTTCTTTGGTTGGT+TGG | + | chr1_2:18669974-18669993 | None:intergenic | 45.0% | |
| TCTGAAAGTCTCGCAATGAG+CGG | + | chr1_2:18670152-18670171 | None:intergenic | 45.0% | |
| CATTGCGAGACTTTCAGACT+AGG | - | chr1_2:18670154-18670173 | Msa0060790:intron | 45.0% | |
| TTGCGAGACTTTCAGACTAG+GGG | - | chr1_2:18670156-18670175 | Msa0060790:intron | 45.0% | |
| TATTGGGTATGGATACCCGT+GGG | + | chr1_2:18670332-18670351 | None:intergenic | 45.0% | |
| TTATTGGGTATGGATACCCG+TGG | + | chr1_2:18670333-18670352 | None:intergenic | 45.0% | |
| CAAAAATCCATGGGTACCCA+TGG | - | chr1_2:18670686-18670705 | Msa0060790:intron | 45.0% | |
| AGGTATCCATGGGTATCCAT+GGG | + | chr1_2:18670705-18670724 | None:intergenic | 45.0% | |
| TCATATTTATCCAACGGGGC+GGG | - | chr1_2:18670784-18670803 | Msa0060790:intron | 45.0% | |
| ! | GTGAAGGTGTGAAAGGTCTT+TGG | + | chr1_2:18671168-18671187 | None:intergenic | 45.0% |
| AGACCTTTCACACCTTCACT+AGG | - | chr1_2:18671169-18671188 | Msa0060790:intron | 45.0% | |
| CAACCAACACTTAACCCTCT+AGG | - | chr1_2:18671443-18671462 | Msa0060790:intron | 45.0% | |
| CTTCCTAGAGGGTTAAGTGT+TGG | + | chr1_2:18671449-18671468 | None:intergenic | 45.0% | |
| GGATGAGTTTGATGTAGCGT+TGG | + | chr1_2:18671488-18671507 | None:intergenic | 45.0% | |
| ATGTGGAAGACTAGTGGGAA+AGG | + | chr1_2:18672182-18672201 | None:intergenic | 45.0% | |
| CTCCCTCTAACATATGGATG+TGG | + | chr1_2:18672199-18672218 | None:intergenic | 45.0% | |
| CTGACACTCCCTCTAACATA+TGG | + | chr1_2:18672205-18672224 | None:intergenic | 45.0% | |
| ATGTTCTTGCAGATGACCAC+TGG | - | chr1_2:18672430-18672449 | Msa0060790:CDS | 45.0% | |
| TGTTCTTGCAGATGACCACT+GGG | - | chr1_2:18672431-18672450 | Msa0060790:CDS | 45.0% | |
| TTACATATGAAAGCCGGGGA+AGG | + | chr1_2:18672468-18672487 | None:intergenic | 45.0% | |
| AGGGCTTACATATGAAAGCC+GGG | + | chr1_2:18672473-18672492 | None:intergenic | 45.0% | |
| GAGGGCTTACATATGAAAGC+CGG | + | chr1_2:18672474-18672493 | None:intergenic | 45.0% | |
| !!! | GTTTTTTTATATTTATATTA+TGG | - | chr1_2:18669362-18669381 | Msa0060790:intron | 5.0% |
| !!! | TTTGAATTTATTTATTTTTT+TGG | + | chr1_2:18670670-18670689 | None:intergenic | 5.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_2:18669122-18669141 | Msa0060790:intron | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | chr1_2:18669132-18669151 | Msa0060790:intron | 50.0% |
| ATGCTGATGACATGTGCCCT+AGG | - | chr1_2:18669388-18669407 | Msa0060790:intron | 50.0% | |
| TGCTGATGACATGTGCCCTA+GGG | - | chr1_2:18669389-18669408 | Msa0060790:intron | 50.0% | |
| ! | TTCTTTGGTTGGTTGGGTGC+TGG | + | chr1_2:18669967-18669986 | None:intergenic | 50.0% |
| GCACCCAACCAACCAAAGAA+AGG | - | chr1_2:18669967-18669986 | Msa0060790:intron | 50.0% | |
| AGGGATGGCCTTTCTTTGGT+TGG | + | chr1_2:18669978-18669997 | None:intergenic | 50.0% | |
| GGCAAAAATACCCATGCCCA+CGG | - | chr1_2:18670180-18670199 | Msa0060790:intron | 50.0% | |
| GCAAAAATACCCATGCCCAC+GGG | - | chr1_2:18670181-18670200 | Msa0060790:intron | 50.0% | |
| ! | TTTTACCCACGGATACCCGT+GGG | + | chr1_2:18670199-18670218 | None:intergenic | 50.0% |
| ! | ATTTTACCCACGGATACCCG+TGG | + | chr1_2:18670200-18670219 | None:intergenic | 50.0% |
| TCCGTGGGTAAAATCCGTCA+CGG | - | chr1_2:18670206-18670225 | Msa0060790:intron | 50.0% | |
| GTAAAATCCGTCACGGGCAT+GGG | - | chr1_2:18670213-18670232 | Msa0060790:intron | 50.0% | |
| TAAAATCCGTCACGGGCATG+GGG | - | chr1_2:18670214-18670233 | Msa0060790:intron | 50.0% | |
| GGTAGCTAAACGGGTATCCA+CGG | - | chr1_2:18670239-18670258 | Msa0060790:intron | 50.0% | |
| GTAGCTAAACGGGTATCCAC+GGG | - | chr1_2:18670240-18670259 | Msa0060790:intron | 50.0% | |
| ! | GAGGTATCCATGGGTATCCA+TGG | + | chr1_2:18670706-18670725 | None:intergenic | 50.0% |
| !! | GCGGGTATTGAGGTATCCAT+GGG | + | chr1_2:18670715-18670734 | None:intergenic | 50.0% |
| CATGGATACCTCAATACCCG+CGG | - | chr1_2:18670714-18670733 | Msa0060790:intron | 50.0% | |
| ATGGATACCTCAATACCCGC+GGG | - | chr1_2:18670715-18670734 | Msa0060790:intron | 50.0% | |
| CATATTTATCCAACGGGGCG+GGG | - | chr1_2:18670785-18670804 | Msa0060790:intron | 50.0% | |
| TCAATGGGTACCCATGGGTA+CGG | + | chr1_2:18670827-18670846 | None:intergenic | 50.0% | |
| GGATGTCAATGGGTACCCAT+GGG | + | chr1_2:18670832-18670851 | None:intergenic | 50.0% | |
| ! | TCAGTCAAGGGTTGGCAACT+AGG | + | chr1_2:18670917-18670936 | None:intergenic | 50.0% |
| GTGCACAATCAGTCAAGGGT+TGG | + | chr1_2:18670925-18670944 | None:intergenic | 50.0% | |
| !! | GATGTAGCGTTGGTCACTAC+CGG | + | chr1_2:18671478-18671497 | None:intergenic | 50.0% |
| ! | GGAAGCCACTTTACCCTCTT+TGG | - | chr1_2:18671555-18671574 | Msa0060790:intron | 50.0% |
| TGCTAGCAGACAAATGCAGC+AGG | - | chr1_2:18671741-18671760 | Msa0060790:intron | 50.0% | |
| AAGGTAGGGCAAAAACCCAG+TGG | + | chr1_2:18672449-18672468 | None:intergenic | 50.0% | |
| TATGAAAGCCGGGGAAGGTA+GGG | + | chr1_2:18672463-18672482 | None:intergenic | 50.0% | |
| ATATGAAAGCCGGGGAAGGT+AGG | + | chr1_2:18672464-18672483 | None:intergenic | 50.0% | |
| GGGCTTACATATGAAAGCCG+GGG | + | chr1_2:18672472-18672491 | None:intergenic | 50.0% | |
| ! | GTGAGTGTTTGGGGCAAACC+TGG | + | chr1_2:18669325-18669344 | None:intergenic | 55.0% |
| AAAGACACGCCGTAACGAGG+AGG | - | chr1_2:18669931-18669950 | Msa0060790:intron | 55.0% | |
| GTGCAGGGATGGCCTTTCTT+TGG | + | chr1_2:18669982-18670001 | None:intergenic | 55.0% | |
| AGCCGACATCGTTGGGTGAT+GGG | + | chr1_2:18670010-18670029 | None:intergenic | 55.0% | |
| GTGTTGGAGCCGACATCGTT+GGG | + | chr1_2:18670017-18670036 | None:intergenic | 55.0% | |
| TGTGTTGGAGCCGACATCGT+TGG | + | chr1_2:18670018-18670037 | None:intergenic | 55.0% | |
| CGCAATGAGCGGATCTTCTC+TGG | + | chr1_2:18670141-18670160 | None:intergenic | 55.0% | |
| CGAGACTTTCAGACTAGGGG+TGG | - | chr1_2:18670159-18670178 | Msa0060790:intron | 55.0% | |
| !!! | CCCGTGACGGATTTTACCCA+CGG | + | chr1_2:18670210-18670229 | None:intergenic | 55.0% |
| CCGTGGGTAAAATCCGTCAC+GGG | - | chr1_2:18670207-18670226 | Msa0060790:intron | 55.0% | |
| GGTAAAATCCGTCACGGGCA+TGG | - | chr1_2:18670212-18670231 | Msa0060790:intron | 55.0% | |
| GGTATGGATACCCGTGGGTA+TGG | + | chr1_2:18670327-18670346 | None:intergenic | 55.0% | |
| TGGGTATCCATGGGTACCCA+TGG | + | chr1_2:18670696-18670715 | None:intergenic | 55.0% | |
| TGGGTACCCATGGATACCCA+TGG | - | chr1_2:18670696-18670715 | Msa0060790:intron | 55.0% | |
| !! | CGCGGGTATTGAGGTATCCA+TGG | + | chr1_2:18670716-18670735 | None:intergenic | 55.0% |
| GGGATGTCAATGGGTACCCA+TGG | + | chr1_2:18670833-18670852 | None:intergenic | 55.0% | |
| ! | ATGTGGGTTATCGGGTCGTG+GGG | + | chr1_2:18671220-18671239 | None:intergenic | 55.0% |
| ! | CATGTGGGTTATCGGGTCGT+GGG | + | chr1_2:18671221-18671240 | None:intergenic | 55.0% |
| ! | TCATGTGGGTTATCGGGTCG+TGG | + | chr1_2:18671222-18671241 | None:intergenic | 55.0% |
| ! | ACCCTCTAGGAAGCACGAAC+CGG | - | chr1_2:18671456-18671475 | Msa0060790:intron | 55.0% |
| !! | ACCGGTTCGTGCTTCCTAGA+GGG | + | chr1_2:18671460-18671479 | None:intergenic | 55.0% |
| !! | TACCGGTTCGTGCTTCCTAG+AGG | + | chr1_2:18671461-18671480 | None:intergenic | 55.0% |
| ! | GGTTTTTGCCCTACCTTCCC+CGG | - | chr1_2:18672452-18672471 | Msa0060790:CDS | 55.0% |
| ACACGCCGTAACGAGGAGGA+CGG | - | chr1_2:18669935-18669954 | Msa0060790:intron | 60.0% | |
| GTTGGCCGTCCTCCTCGTTA+CGG | + | chr1_2:18669943-18669962 | None:intergenic | 60.0% | |
| !! | CGACATCGTTGGGTGATGGG+GGG | + | chr1_2:18670007-18670026 | None:intergenic | 60.0% |
| ! | CCGACATCGTTGGGTGATGG+GGG | + | chr1_2:18670008-18670027 | None:intergenic | 60.0% |
| CCCCCATCACCCAACGATGT+CGG | - | chr1_2:18670005-18670024 | Msa0060790:intron | 60.0% | |
| GCCGACATCGTTGGGTGATG+GGG | + | chr1_2:18670009-18670028 | None:intergenic | 60.0% | |
| GAGCCGACATCGTTGGGTGA+TGG | + | chr1_2:18670011-18670030 | None:intergenic | 60.0% | |
| GCATGGGGCGGGTAGCTAAA+CGG | - | chr1_2:18670229-18670248 | Msa0060790:intron | 60.0% | |
| CATGGGGCGGGTAGCTAAAC+GGG | - | chr1_2:18670230-18670249 | Msa0060790:intron | 60.0% | |
| CTCGTGGGTACCCACTATGC+GGG | + | chr1_2:18670743-18670762 | None:intergenic | 60.0% | |
| CCTCGTGGGTACCCACTATG+CGG | + | chr1_2:18670744-18670763 | None:intergenic | 60.0% | |
| !! | CGCATAGTGGGTACCCACGA+GGG | - | chr1_2:18670742-18670761 | Msa0060790:intron | 60.0% |
| AGTGGGTACCCACGAGGGTA+TGG | - | chr1_2:18670747-18670766 | Msa0060790:intron | 60.0% | |
| ! | GTGGGTACCCACGAGGGTAT+GGG | - | chr1_2:18670748-18670767 | Msa0060790:intron | 60.0% |
| ! | TGGGTACCCACGAGGGTATG+GGG | - | chr1_2:18670749-18670768 | Msa0060790:intron | 60.0% |
| TTTATCCAACGGGGCGGGGA+CGG | - | chr1_2:18670789-18670808 | Msa0060790:intron | 60.0% | |
| !! | GGTTGGTTGGGTGCTGGCGT+TGG | + | chr1_2:18669961-18669980 | None:intergenic | 65.0% |
| GATGGGGGGTAGTGCAGGGA+TGG | + | chr1_2:18669993-18670012 | None:intergenic | 65.0% | |
| !! | GGGTGATGGGGGGTAGTGCA+GGG | + | chr1_2:18669997-18670016 | None:intergenic | 65.0% |
| !! | TGGGTGATGGGGGGTAGTGC+AGG | + | chr1_2:18669998-18670017 | None:intergenic | 65.0% |
| CCACGGATACCCGTGGGCAT+GGG | + | chr1_2:18670193-18670212 | None:intergenic | 65.0% | |
| CCATGCCCACGGGTATCCGT+GGG | - | chr1_2:18670191-18670210 | Msa0060790:intron | 65.0% | |
| AATCCGTCACGGGCATGGGG+CGG | - | chr1_2:18670217-18670236 | Msa0060790:intron | 65.0% | |
| ACCCACTATGCGGGTACCCG+CGG | + | chr1_2:18670734-18670753 | None:intergenic | 65.0% | |
| !! | CCGCATAGTGGGTACCCACG+AGG | - | chr1_2:18670741-18670760 | Msa0060790:intron | 65.0% |
| ! | GTACCCACGAGGGTATGGGG+CGG | - | chr1_2:18670752-18670771 | Msa0060790:intron | 65.0% |
| ! | TACCCACGAGGGTATGGGGC+GGG | - | chr1_2:18670753-18670772 | Msa0060790:intron | 65.0% |
| TACCCGCCCCATACCCTCGT+GGG | + | chr1_2:18670758-18670777 | None:intergenic | 65.0% | |
| ! | ACGAGGGTATGGGGCGGGTA+CGG | - | chr1_2:18670758-18670777 | Msa0060790:intron | 65.0% |
| TTATCCAACGGGGCGGGGAC+GGG | - | chr1_2:18670790-18670809 | Msa0060790:intron | 65.0% | |
| CCCATGCCCACGGGTATCCG+TGG | - | chr1_2:18670190-18670209 | Msa0060790:intron | 70.0% | |
| CCCACGGATACCCGTGGGCA+TGG | + | chr1_2:18670194-18670213 | None:intergenic | 70.0% | |
| ATCCGTCACGGGCATGGGGC+GGG | - | chr1_2:18670218-18670237 | Msa0060790:intron | 70.0% | |
| TACCCGCCCCATGCCCGTGA+CGG | + | chr1_2:18670223-18670242 | None:intergenic | 70.0% | |
| ! | GCGGGTACCCGCGGGTATTG+AGG | + | chr1_2:18670725-18670744 | None:intergenic | 70.0% |
| ACCCGCGGGTACCCGCATAG+TGG | - | chr1_2:18670729-18670748 | Msa0060790:intron | 70.0% | |
| CCCACTATGCGGGTACCCGC+GGG | + | chr1_2:18670733-18670752 | None:intergenic | 70.0% | |
| CCCGCGGGTACCCGCATAGT+GGG | - | chr1_2:18670730-18670749 | Msa0060790:intron | 70.0% | |
| GTACCCGCCCCATACCCTCG+TGG | + | chr1_2:18670759-18670778 | None:intergenic | 70.0% | |
| ! | CGAGGGTATGGGGCGGGTAC+GGG | - | chr1_2:18670759-18670778 | Msa0060790:intron | 70.0% |
| GATACCCGTCCCCGCCCCGT+TGG | + | chr1_2:18670797-18670816 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18668572 | 18672530 | 18668572 | ID=Msa0060790;Name=Msa0060790 |
| chr1_2 | mRNA | 18668572 | 18672530 | 18668572 | ID=Msa0060790-mRNA-1;Parent=Msa0060790;Name=Msa0060790-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.5|1|1|2|0|268 |
| chr1_2 | exon | 18671813 | 18672530 | 18671813 | ID=Msa0060790-mRNA-1:exon:7248;Parent=Msa0060790-mRNA-1 |
| chr1_2 | exon | 18668572 | 18668660 | 18668572 | ID=Msa0060790-mRNA-1:exon:7247;Parent=Msa0060790-mRNA-1 |
| chr1_2 | CDS | 18671813 | 18672530 | 18671813 | ID=Msa0060790-mRNA-1:cds;Parent=Msa0060790-mRNA-1 |
| chr1_2 | CDS | 18668572 | 18668660 | 18668572 | ID=Msa0060790-mRNA-1:cds;Parent=Msa0060790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
