Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968430 | AES59897.2 | 75.314 | 239 | 50 | 7 | 15 | 248 | 15 | 249 | 6.98e-108 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011790 | Msa0968430 | 0.847400 | 1.184900e-59 | -8.615850e-47 |
| Msa0021340 | Msa0968430 | 0.821591 | 3.722320e-53 | -8.615850e-47 |
| Msa0060790 | Msa0968430 | 0.855389 | 6.519298e-62 | -8.615850e-47 |
| Msa0152110 | Msa0968430 | 0.846045 | 2.779687e-59 | -8.615850e-47 |
| Msa0229630 | Msa0968430 | 0.947655 | 4.408917e-106 | -8.615850e-47 |
| Msa0968410 | Msa0968430 | 0.893201 | 7.836920e-75 | -8.615850e-47 |
| Msa0968430 | Msa1389180 | 0.852606 | 4.135322e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968430 | MtrunA17_Chr1g0160711 | 75.107 | 233 | 50 | 6 | 21 | 248 | 17 | 246 | 2.49e-110 | 332 |
| Msa0968430 | MtrunA17_Chr1g0160761 | 69.380 | 258 | 64 | 6 | 1 | 248 | 1 | 253 | 1.05e-108 | 328 |
| Msa0968430 | MtrunA17_Chr1g0160721 | 60.870 | 253 | 86 | 5 | 1 | 251 | 12 | 253 | 1.25e-88 | 277 |
| Msa0968430 | MtrunA17_Chr1g0160661 | 57.708 | 253 | 94 | 5 | 1 | 251 | 27 | 268 | 6.76e-85 | 262 |
| Msa0968430 | MtrunA17_Chr1g0160561 | 52.471 | 263 | 103 | 8 | 2 | 250 | 7 | 261 | 4.11e-76 | 244 |
| Msa0968430 | MtrunA17_Chr1g0160701 | 58.264 | 242 | 78 | 11 | 17 | 246 | 32 | 262 | 3.11e-70 | 228 |
| Msa0968430 | MtrunA17_Chr1g0157791 | 33.840 | 263 | 141 | 11 | 7 | 247 | 6 | 257 | 1.12e-28 | 115 |
| Msa0968430 | MtrunA17_Chr1g0158061 | 35.321 | 218 | 119 | 9 | 28 | 232 | 29 | 237 | 4.50e-28 | 109 |
| Msa0968430 | MtrunA17_Chr1g0158151 | 33.333 | 285 | 151 | 14 | 1 | 256 | 1 | 275 | 1.61e-27 | 111 |
| Msa0968430 | MtrunA17_Chr1g0157961 | 35.426 | 223 | 123 | 8 | 24 | 233 | 33 | 247 | 6.05e-27 | 106 |
| Msa0968430 | MtrunA17_Chr1g0157991 | 35.683 | 227 | 121 | 8 | 24 | 233 | 28 | 246 | 1.60e-26 | 108 |
| Msa0968430 | MtrunA17_Chr1g0158191 | 33.721 | 258 | 122 | 14 | 10 | 234 | 4 | 245 | 2.88e-26 | 108 |
| Msa0968430 | MtrunA17_Chr3g0088331 | 32.653 | 245 | 129 | 10 | 24 | 253 | 36 | 259 | 4.81e-25 | 100 |
| Msa0968430 | MtrunA17_Chr1g0158411 | 31.839 | 223 | 121 | 8 | 26 | 234 | 46 | 251 | 1.40e-22 | 97.4 |
| Msa0968430 | MtrunA17_Chr1g0158041 | 32.184 | 261 | 137 | 10 | 26 | 255 | 28 | 279 | 1.87e-22 | 97.1 |
| Msa0968430 | MtrunA17_Chr1g0158761 | 32.520 | 246 | 126 | 11 | 1 | 234 | 1 | 218 | 4.69e-22 | 95.9 |
| Msa0968430 | MtrunA17_Chr6g0467711 | 33.203 | 256 | 127 | 13 | 3 | 234 | 12 | 247 | 5.73e-22 | 95.5 |
| Msa0968430 | MtrunA17_Chr1g0158461 | 29.478 | 268 | 145 | 11 | 1 | 234 | 17 | 274 | 6.26e-22 | 93.2 |
| Msa0968430 | MtrunA17_Chr1g0157881 | 29.514 | 288 | 130 | 12 | 8 | 234 | 34 | 309 | 2.49e-21 | 93.6 |
| Msa0968430 | MtrunA17_Chr1g0158731 | 29.555 | 247 | 145 | 10 | 4 | 234 | 8 | 241 | 1.49e-20 | 89.4 |
| Msa0968430 | MtrunA17_Chr1g0158331 | 29.811 | 265 | 141 | 13 | 1 | 234 | 17 | 267 | 2.40e-19 | 86.3 |
| Msa0968430 | MtrunA17_Chr1g0158541 | 32.389 | 247 | 138 | 11 | 5 | 234 | 16 | 250 | 1.21e-18 | 85.9 |
| Msa0968430 | MtrunA17_Chr1g0158661 | 27.407 | 270 | 158 | 9 | 7 | 257 | 17 | 267 | 3.22e-18 | 84.3 |
| Msa0968430 | MtrunA17_Chr1g0158631 | 28.938 | 273 | 145 | 12 | 7 | 251 | 17 | 268 | 5.59e-18 | 83.6 |
| Msa0968430 | MtrunA17_Chr1g0157861 | 26.518 | 313 | 140 | 15 | 18 | 269 | 29 | 312 | 2.36e-17 | 82.0 |
| Msa0968430 | MtrunA17_Chr1g0157911 | 30.000 | 230 | 125 | 11 | 27 | 234 | 35 | 250 | 3.56e-17 | 81.3 |
| Msa0968430 | MtrunA17_Chr1g0158121 | 48.148 | 81 | 36 | 2 | 24 | 103 | 29 | 104 | 5.96e-15 | 70.1 |
| Msa0968430 | MtrunA17_Chr1g0158301 | 28.862 | 246 | 144 | 10 | 5 | 234 | 18 | 248 | 6.05e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | 6_3:+98819922 | Msa0968430:CDS |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | 6_3:+98819923 | Msa0968430:CDS |
| TTTATGGATTTGAACTTTCT+TGG | 0.219600 | 6_3:+98820268 | Msa0968430:CDS |
| CATTATTGTCCTCACATAAT+AGG | 0.236387 | 6_3:-98819783 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | 6_3:+98819873 | Msa0968430:CDS |
| GTGTTCTTGCAGATGGCTAC+TGG | 0.268248 | 6_3:+98824218 | Msa0968430:intron |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | 6_3:-98819754 | None:intergenic |
| TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | 6_3:-98819928 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 6_3:+98820153 | Msa0968430:CDS |
| CTCAATAGTCTTTGTAATGA+AGG | 0.356928 | 6_3:+98820291 | Msa0968430:CDS |
| TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | 6_3:-98824287 | None:intergenic |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 6_3:+98820160 | Msa0968430:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 6_3:+98820170 | Msa0968430:CDS |
| CAGCATTTATGTATAGATCC+AGG | 0.447944 | 6_3:+98820342 | Msa0968430:CDS |
| TATGAAAGCCGCGGAAGGTA+GGG | 0.458004 | 6_3:-98824248 | None:intergenic |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | 6_3:-98819984 | None:intergenic |
| TAACAGCACGACAAGGGTTA+AGG | 0.463192 | 6_3:-98819617 | None:intergenic |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | 6_3:+98820207 | Msa0968430:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | 6_3:+98820120 | Msa0968430:CDS |
| TGTTCTTGCAGATGGCTACT+GGG | 0.473780 | 6_3:+98824219 | Msa0968430:intron |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | 6_3:+98820117 | Msa0968430:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 6_3:+98820159 | Msa0968430:CDS |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | 6_3:-98819980 | None:intergenic |
| CGGTCGGAATATATTGATGA+AGG | 0.526826 | 6_3:+98820060 | Msa0968430:CDS |
| ATATGAAAGCCGCGGAAGGT+AGG | 0.528563 | 6_3:-98824249 | None:intergenic |
| CTGGATCTATACATAAATGC+TGG | 0.539585 | 6_3:-98820341 | None:intergenic |
| TTCTACAGACATGCGTCGAA+TGG | 0.543277 | 6_3:+98820242 | Msa0968430:CDS |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | 6_3:-98819920 | None:intergenic |
| ATGAAAGCCGCGGAAGGTAG+GGG | 0.556160 | 6_3:-98824247 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | 6_3:+98820193 | Msa0968430:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | 6_3:-98819924 | None:intergenic |
| ATTGTAATCCAATAGTCGTA+TGG | 0.577306 | 6_3:-98819881 | None:intergenic |
| TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | 6_3:+98819652 | Msa0968430:CDS |
| AACAAGAGTCATGTTCAAGA+AGG | 0.596613 | 6_3:+98819683 | Msa0968430:CDS |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | 6_3:-98820216 | None:intergenic |
| AAGAGTCATGTTCAAGAAGG+TGG | 0.600098 | 6_3:+98819686 | Msa0968430:CDS |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | 6_3:-98819974 | None:intergenic |
| TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | 6_3:-98824278 | None:intergenic |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | 6_3:+98819755 | Msa0968430:CDS |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | 6_3:-98819925 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | 6_3:-98819979 | None:intergenic |
| GTATTAGTAACAGCACGACA+AGG | 0.628217 | 6_3:-98819624 | None:intergenic |
| TCGGAATATATTGATGAAGG+TGG | 0.639500 | 6_3:+98820063 | Msa0968430:CDS |
| TTACATATGAAAGCCGCGGA+AGG | 0.648203 | 6_3:-98824253 | None:intergenic |
| TATTAGTAACAGCACGACAA+GGG | 0.651789 | 6_3:-98819623 | None:intergenic |
| CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | 6_3:-98824277 | None:intergenic |
| TATGAATTTGAAGAACACCA+TGG | 0.674399 | 6_3:+98819820 | Msa0968430:CDS |
| GAGGTACAACCTATTATGTG+AGG | 0.678478 | 6_3:+98819774 | Msa0968430:CDS |
| TCATGTTCAAGAAGGTGGTG+CGG | 0.678993 | 6_3:+98819691 | Msa0968430:CDS |
| GGGCTTACATATGAAAGCCG+CGG | 0.686004 | 6_3:-98824257 | None:intergenic |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 6_3:+98819745 | Msa0968430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTTATATTA+TGG | + | chr6_3:98820401-98820420 | Msa0968430:intron | 0.0% |
| !!! | TTTTTTTTTATTTATATTAT+GGG | + | chr6_3:98820402-98820421 | Msa0968430:intron | 0.0% |
| !!! | TATTTTTTTTTTTTTGTGAT+GGG | - | chr6_3:98822564-98822583 | None:intergenic | 10.0% |
| !! | TTTCCAAATAAATTATATTT+GGG | + | chr6_3:98822770-98822789 | Msa0968430:intron | 10.0% |
| !! | GCATTAAATTTAAAAATAAA+AGG | - | chr6_3:98823825-98823844 | None:intergenic | 10.0% |
| !!! | CTATTTTTTTTTTTTTGTGA+TGG | - | chr6_3:98822565-98822584 | None:intergenic | 15.0% |
| !! | GTTTCCAAATAAATTATATT+TGG | + | chr6_3:98822769-98822788 | Msa0968430:intron | 15.0% |
| !! | TTCCAAATAAATTATATTTG+GGG | + | chr6_3:98822771-98822790 | Msa0968430:intron | 15.0% |
| !!! | TGTTACATTTATTTAGTTTT+TGG | + | chr6_3:98823640-98823659 | Msa0968430:intron | 15.0% |
| !! | GTAAATAAGAGAAAAATTAA+GGG | - | chr6_3:98823940-98823959 | None:intergenic | 15.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | - | chr6_3:98819840-98819859 | None:intergenic | 20.0% |
| !! | TTAAGAATTGTAGATTCATA+GGG | + | chr6_3:98820443-98820462 | Msa0968430:intron | 20.0% |
| !! | TCAAACTAATCTCTATATAT+AGG | - | chr6_3:98820590-98820609 | None:intergenic | 20.0% |
| !! | ATAAGAACTAAGTAAAACAA+AGG | + | chr6_3:98820817-98820836 | Msa0968430:intron | 20.0% |
| !! | TAAGAACTAAGTAAAACAAA+GGG | + | chr6_3:98820818-98820837 | Msa0968430:intron | 20.0% |
| !! | TTAAGAATTGTAGATTCATA+GGG | + | chr6_3:98820443-98820462 | Msa0968430:intron | 20.0% |
| !! | TCAAACTAATCTCTATATAT+AGG | - | chr6_3:98820590-98820609 | None:intergenic | 20.0% |
| !! | TACCCCAAATATAATTTATT+TGG | - | chr6_3:98822776-98822795 | None:intergenic | 20.0% |
| !!! | GAGTTACTTGTTTTTTTTTT+GGG | - | chr6_3:98822816-98822835 | None:intergenic | 20.0% |
| !! | TTCAATTTGAAGAGATTTAA+GGG | + | chr6_3:98823372-98823391 | Msa0968430:intron | 20.0% |
| !! | AATTTGTATTGTATCAATGT+AGG | - | chr6_3:98823499-98823518 | None:intergenic | 20.0% |
| !!! | GAGCATGTATTTTTATATTT+GGG | - | chr6_3:98823581-98823600 | None:intergenic | 20.0% |
| !!! | TGAGCATGTATTTTTATATT+TGG | - | chr6_3:98823582-98823601 | None:intergenic | 20.0% |
| !!! | GAAGAAATTGAGATATTTTA+AGG | + | chr6_3:98823671-98823690 | Msa0968430:intron | 20.0% |
| !!! | AGTATCTAGTTTAGTAATTT+TGG | - | chr6_3:98823755-98823774 | None:intergenic | 20.0% |
| !! | TACTAAACTAGATACTAAAA+TGG | + | chr6_3:98823759-98823778 | Msa0968430:intron | 20.0% |
| !! | TAGATACTAAAATGGATAAA+GGG | + | chr6_3:98823767-98823786 | Msa0968430:intron | 20.0% |
| !! | GGTAAATAAGAGAAAAATTA+AGG | - | chr6_3:98823941-98823960 | None:intergenic | 20.0% |
| !! | TATATCCATTGTAAACAAAT+TGG | + | chr6_3:98824165-98824184 | Msa0968430:intron | 20.0% |
| ! | TATATGTGAGCTGTAAAAAT+CGG | + | chr6_3:98820040-98820059 | Msa0968430:CDS | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | + | chr6_3:98820147-98820166 | Msa0968430:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | + | chr6_3:98820268-98820287 | Msa0968430:CDS | 25.0% |
| ! | GTTAAGAATTGTAGATTCAT+AGG | + | chr6_3:98820442-98820461 | Msa0968430:intron | 25.0% |
| ! | ATTGTATTCCAAACTCAAAT+TGG | - | chr6_3:98820772-98820791 | None:intergenic | 25.0% |
| ! | GTGTAAACTAGTAAAACAAA+AGG | + | chr6_3:98820840-98820859 | Msa0968430:intron | 25.0% |
| ! | TAAGATTCAAGAGAATTTCA+TGG | + | chr6_3:98821313-98821332 | Msa0968430:intron | 25.0% |
| ! | TGAATCTACAATTCTTAACA+TGG | - | chr6_3:98820441-98820460 | None:intergenic | 25.0% |
| ! | GTTAAGAATTGTAGATTCAT+AGG | + | chr6_3:98820442-98820461 | Msa0968430:intron | 25.0% |
| ! | CATGTTGTTAAAATAATTGG+AGG | - | chr6_3:98822351-98822370 | None:intergenic | 25.0% |
| ! | GCACATGTTGTTAAAATAAT+TGG | - | chr6_3:98822354-98822373 | None:intergenic | 25.0% |
| ! | GATATAATAGTACAAGAAGT+GGG | + | chr6_3:98822613-98822632 | Msa0968430:intron | 25.0% |
| !!! | TTGTCAAAATGGTCTTATTT+AGG | - | chr6_3:98822660-98822679 | None:intergenic | 25.0% |
| ! | GTTATGTATGTTTGTCAAAA+TGG | - | chr6_3:98822671-98822690 | None:intergenic | 25.0% |
| !!! | GGAGTTACTTGTTTTTTTTT+TGG | - | chr6_3:98822817-98822836 | None:intergenic | 25.0% |
| !!! | CATATCATGTGTGTTTTTTT+TGG | - | chr6_3:98823331-98823350 | None:intergenic | 25.0% |
| ! | CAAAAAAAACACACATGATA+TGG | + | chr6_3:98823329-98823348 | Msa0968430:intron | 25.0% |
| ! | CTTCAATTTGAAGAGATTTA+AGG | + | chr6_3:98823371-98823390 | Msa0968430:intron | 25.0% |
| ! | AAATCACTTGGGATTTAATT+GGG | - | chr6_3:98823474-98823493 | None:intergenic | 25.0% |
| !!! | TGTATTTTTATATTTGGGAG+TGG | - | chr6_3:98823576-98823595 | None:intergenic | 25.0% |
| ! | CTAGATACTAAAATGGATAA+AGG | + | chr6_3:98823766-98823785 | Msa0968430:intron | 25.0% |
| ! | AGATACTAAAATGGATAAAG+GGG | + | chr6_3:98823768-98823787 | Msa0968430:intron | 25.0% |
| !! | AAATGCAACTTTTATCTAGT+GGG | + | chr6_3:98823865-98823884 | Msa0968430:intron | 25.0% |
| ! | TTCTATTACCATTTCGAAAT+TGG | + | chr6_3:98824073-98824092 | Msa0968430:intron | 25.0% |
| !! | AACTACCAATTTGTTTACAA+TGG | - | chr6_3:98824173-98824192 | None:intergenic | 25.0% |
| ! | TTTAGCATGTCTTGAATTAA+GGG | - | chr6_3:98824290-98824309 | None:intergenic | 25.0% |
| !! | TTTTAGCATGTCTTGAATTA+AGG | - | chr6_3:98824291-98824310 | None:intergenic | 25.0% |
| CATTATTGTCCTCACATAAT+AGG | - | chr6_3:98819786-98819805 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | + | chr6_3:98819820-98819839 | Msa0968430:CDS | 30.0% | |
| ATTGTAATCCAATAGTCGTA+TGG | - | chr6_3:98819884-98819903 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | - | chr6_3:98819923-98819942 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | + | chr6_3:98819922-98819941 | Msa0968430:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | + | chr6_3:98819923-98819942 | Msa0968430:CDS | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | - | chr6_3:98819931-98819950 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | - | chr6_3:98819982-98820001 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | - | chr6_3:98819987-98820006 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | + | chr6_3:98820117-98820136 | Msa0968430:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | - | chr6_3:98820149-98820168 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | + | chr6_3:98820146-98820165 | Msa0968430:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | + | chr6_3:98820193-98820212 | Msa0968430:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | - | chr6_3:98820219-98820238 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+AGG | + | chr6_3:98820291-98820310 | Msa0968430:CDS | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+AGG | - | chr6_3:98820372-98820391 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | + | chr6_3:98820372-98820391 | Msa0968430:intron | 30.0% | |
| !! | AAGCATAAGAGTATTCATGA+GGG | + | chr6_3:98820495-98820514 | Msa0968430:intron | 30.0% |
| AGGTTATGTGAAGTTAGTTA+AGG | - | chr6_3:98820703-98820722 | None:intergenic | 30.0% | |
| ! | GAAATTCACCAATTTGAGTT+TGG | + | chr6_3:98820761-98820780 | Msa0968430:intron | 30.0% |
| ! | GTACAGCTTCTGAAAAAAAA+CGG | + | chr6_3:98820990-98821009 | Msa0968430:intron | 30.0% |
| CATGGATTTCATGAATTTCA+TGG | + | chr6_3:98821331-98821350 | Msa0968430:intron | 30.0% | |
| TTTCATGGATCCTGAAAATT+TGG | + | chr6_3:98821346-98821365 | Msa0968430:intron | 30.0% | |
| TTCATGGATCCTGAAAATTT+GGG | + | chr6_3:98821347-98821366 | Msa0968430:intron | 30.0% | |
| ! | TCTTGATTTCCCAAATTTTC+AGG | - | chr6_3:98821359-98821378 | None:intergenic | 30.0% |
| ATGAAAGGAAGAGATTTAAC+CGG | + | chr6_3:98821381-98821400 | Msa0968430:intron | 30.0% | |
| ATCTTCATCTTCATCAATGT+CGG | + | chr6_3:98821992-98822011 | Msa0968430:intron | 30.0% | |
| !! | AAGCATAAGAGTATTCATGA+GGG | + | chr6_3:98820495-98820514 | Msa0968430:intron | 30.0% |
| AGGTTATGTGAAGTTAGTTA+AGG | - | chr6_3:98820703-98820722 | None:intergenic | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | + | chr6_3:98822471-98822490 | Msa0968430:intron | 30.0% |
| CGATATAATAGTACAAGAAG+TGG | + | chr6_3:98822612-98822631 | Msa0968430:intron | 30.0% | |
| CAAGTAACTCCTTAAAGTTA+AGG | + | chr6_3:98822826-98822845 | Msa0968430:intron | 30.0% | |
| ! | GCTTTCTTTTACATGATTTC+AGG | - | chr6_3:98822884-98822903 | None:intergenic | 30.0% |
| !! | TGTTTGGTTTGACTTTAGTT+TGG | - | chr6_3:98823170-98823189 | None:intergenic | 30.0% |
| ATTTCATCTTTAGGTGGTTA+GGG | - | chr6_3:98823247-98823266 | None:intergenic | 30.0% | |
| TATTTCATCTTTAGGTGGTT+AGG | - | chr6_3:98823248-98823267 | None:intergenic | 30.0% | |
| CTAAAGATGAAATACCACAT+CGG | + | chr6_3:98823254-98823273 | Msa0968430:intron | 30.0% | |
| AAAGTGAAGTAACAAACTAG+TGG | + | chr6_3:98823284-98823303 | Msa0968430:intron | 30.0% | |
| AAGTGAAGTAACAAACTAGT+GGG | + | chr6_3:98823285-98823304 | Msa0968430:intron | 30.0% | |
| !!! | GTGTGTTTTTTTTGGTTTTG+CGG | - | chr6_3:98823323-98823342 | None:intergenic | 30.0% |
| AATCACTTGGGATTTAATTG+GGG | - | chr6_3:98823473-98823492 | None:intergenic | 30.0% | |
| GAAATCACTTGGGATTTAAT+TGG | - | chr6_3:98823475-98823494 | None:intergenic | 30.0% | |
| ! | GAAATGCAACTTTTATCTAG+TGG | + | chr6_3:98823864-98823883 | Msa0968430:intron | 30.0% |
| ATGTAACACCAATTTCGAAA+TGG | - | chr6_3:98824084-98824103 | None:intergenic | 30.0% | |
| TATTAGTAACAGCACGACAA+GGG | - | chr6_3:98819626-98819645 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | + | chr6_3:98819683-98819702 | Msa0968430:CDS | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | + | chr6_3:98819719-98819738 | Msa0968430:CDS | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | - | chr6_3:98819732-98819751 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | - | chr6_3:98819927-98819946 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | - | chr6_3:98819928-98819947 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | - | chr6_3:98819983-98820002 | None:intergenic | 35.0% | |
| TCGGAATATATTGATGAAGG+TGG | + | chr6_3:98820063-98820082 | Msa0968430:CDS | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | + | chr6_3:98820120-98820139 | Msa0968430:CDS | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | - | chr6_3:98820344-98820363 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | + | chr6_3:98820342-98820361 | Msa0968430:CDS | 35.0% | |
| TTCATAGGGATGAAGATCAT+AGG | + | chr6_3:98820457-98820476 | Msa0968430:intron | 35.0% | |
| !! | CAAGCATAAGAGTATTCATG+AGG | + | chr6_3:98820494-98820513 | Msa0968430:intron | 35.0% |
| CTAAACTAGAGTTAGTAGCT+TGG | - | chr6_3:98820638-98820657 | None:intergenic | 35.0% | |
| GAGGCTGTTAAAATAATTGG+AGG | - | chr6_3:98820723-98820742 | None:intergenic | 35.0% | |
| AGGGAGGCTGTTAAAATAAT+TGG | - | chr6_3:98820726-98820745 | None:intergenic | 35.0% | |
| ! | TTTCTCCACTTTGAGTTTGA+GGG | - | chr6_3:98820745-98820764 | None:intergenic | 35.0% |
| ! | ATTTCTCCACTTTGAGTTTG+AGG | - | chr6_3:98820746-98820765 | None:intergenic | 35.0% |
| !!! | TTTTTTCAGAAGCTGTACTC+AGG | - | chr6_3:98820988-98821007 | None:intergenic | 35.0% |
| TCAAATCTTCTTGTAGCTTC+TGG | + | chr6_3:98821118-98821137 | Msa0968430:intron | 35.0% | |
| ! | TAGTAAGAAAAGTGCGTTCT+TGG | - | chr6_3:98821295-98821314 | None:intergenic | 35.0% |
| TGGGAAATCAAGAGAATGAA+AGG | + | chr6_3:98821366-98821385 | Msa0968430:intron | 35.0% | |
| !!! | TCGAATTTGTTGGAGAGTTT+TGG | + | chr6_3:98821452-98821471 | Msa0968430:intron | 35.0% |
| !! | TTTCGTTGTTTCTGAAGCAT+CGG | - | chr6_3:98821697-98821716 | None:intergenic | 35.0% |
| ! | ACGGAAAATCCATCGAATTT+TGG | + | chr6_3:98821855-98821874 | Msa0968430:intron | 35.0% |
| TCAATCGAACCAAAATTCGA+TGG | - | chr6_3:98821867-98821886 | None:intergenic | 35.0% | |
| !!! | TCGAATTTTGGTTCGATTGA+AGG | + | chr6_3:98821867-98821886 | Msa0968430:intron | 35.0% |
| TTTCGATTCTCCTATCATTC+CGG | - | chr6_3:98821901-98821920 | None:intergenic | 35.0% | |
| GAGAATCGAAACTACCAAAT+CGG | + | chr6_3:98821910-98821929 | Msa0968430:intron | 35.0% | |
| TTCATAGGGATGAAGATCAT+AGG | + | chr6_3:98820457-98820476 | Msa0968430:intron | 35.0% | |
| !! | CAAGCATAAGAGTATTCATG+AGG | + | chr6_3:98820494-98820513 | Msa0968430:intron | 35.0% |
| CTAAACTAGAGTTAGTAGCT+TGG | - | chr6_3:98820638-98820657 | None:intergenic | 35.0% | |
| ! | TTTTAACAACATGTGCCCTA+CGG | + | chr6_3:98822358-98822377 | Msa0968430:intron | 35.0% |
| AATCTTTATCATGTGCCGTA+GGG | - | chr6_3:98822376-98822395 | None:intergenic | 35.0% | |
| AGAAGTGGGAAATACTTCTA+TGG | + | chr6_3:98822627-98822646 | Msa0968430:intron | 35.0% | |
| ACACGCACACAACTTAAAAT+AGG | - | chr6_3:98822751-98822770 | None:intergenic | 35.0% | |
| ! | ACATGATTTCAGGTATGCTT+AGG | - | chr6_3:98822874-98822893 | None:intergenic | 35.0% |
| !! | TATTAGTGTTGGTCTTGTGT+TGG | - | chr6_3:98823009-98823028 | None:intergenic | 35.0% |
| ACAAGACCAACACTAATAGT+AGG | + | chr6_3:98823011-98823030 | Msa0968430:intron | 35.0% | |
| CATGTACCTACTATTAGTGT+TGG | - | chr6_3:98823020-98823039 | None:intergenic | 35.0% | |
| CAACACTAATAGTAGGTACA+TGG | + | chr6_3:98823018-98823037 | Msa0968430:intron | 35.0% | |
| TCGTATTGGAAGTAGTTTCT+TGG | - | chr6_3:98823051-98823070 | None:intergenic | 35.0% | |
| ! | ACAGGGAGAAATTTTCGTAT+TGG | - | chr6_3:98823065-98823084 | None:intergenic | 35.0% |
| TATTGATCAGTTGGTTGACA+GGG | - | chr6_3:98823082-98823101 | None:intergenic | 35.0% | |
| TTTCAGACACACCATACAAT+AGG | + | chr6_3:98823141-98823160 | Msa0968430:intron | 35.0% | |
| TAGTTTGGAAGCCTATTGTA+TGG | - | chr6_3:98823155-98823174 | None:intergenic | 35.0% | |
| ! | ACTGGGTAGTAGTTTTTGTT+TGG | - | chr6_3:98823186-98823205 | None:intergenic | 35.0% |
| TGTGGTATTTCATCTTTAGG+TGG | - | chr6_3:98823253-98823272 | None:intergenic | 35.0% | |
| CGATGTGGTATTTCATCTTT+AGG | - | chr6_3:98823256-98823275 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTTTGGTTTTGCGG+AGG | - | chr6_3:98823320-98823339 | None:intergenic | 35.0% |
| TTTGAAGAGATTTAAGGGAG+TGG | + | chr6_3:98823377-98823396 | Msa0968430:intron | 35.0% | |
| ! | TTCTCAACACCTTCTAAGAA+GGG | + | chr6_3:98823430-98823449 | Msa0968430:intron | 35.0% |
| CAATGTAGGTGAAATCACTT+GGG | - | chr6_3:98823485-98823504 | None:intergenic | 35.0% | |
| TCAATGTAGGTGAAATCACT+TGG | - | chr6_3:98823486-98823505 | None:intergenic | 35.0% | |
| TTCCACATCCATATGTTAGA+GGG | + | chr6_3:98823982-98824001 | Msa0968430:intron | 35.0% | |
| GCAAGAACACAGAAAAAAGA+TGG | - | chr6_3:98824208-98824227 | None:intergenic | 35.0% | |
| ! | TTTTTCTGTGTTCTTGCAGA+TGG | + | chr6_3:98824211-98824230 | Msa0968430:intron | 35.0% |
| CTTGAATTAAGGGAATGTGA+GGG | - | chr6_3:98824280-98824299 | None:intergenic | 35.0% | |
| TCTTGAATTAAGGGAATGTG+AGG | - | chr6_3:98824281-98824300 | None:intergenic | 35.0% | |
| GTATTAGTAACAGCACGACA+AGG | - | chr6_3:98819627-98819646 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | + | chr6_3:98819652-98819671 | Msa0968430:CDS | 40.0% | |
| AAGAGTCATGTTCAAGAAGG+TGG | + | chr6_3:98819686-98819705 | Msa0968430:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | - | chr6_3:98819733-98819752 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | - | chr6_3:98819736-98819755 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | + | chr6_3:98819745-98819764 | Msa0968430:CDS | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | + | chr6_3:98819774-98819793 | Msa0968430:CDS | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | + | chr6_3:98819873-98819892 | Msa0968430:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | - | chr6_3:98819977-98819996 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | + | chr6_3:98819976-98819995 | Msa0968430:CDS | 40.0% |
| TGTGAGCTGTAAAAATCGGT+CGG | + | chr6_3:98820044-98820063 | Msa0968430:CDS | 40.0% | |
| CGGTCGGAATATATTGATGA+AGG | + | chr6_3:98820060-98820079 | Msa0968430:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | + | chr6_3:98820153-98820172 | Msa0968430:CDS | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | + | chr6_3:98820252-98820271 | Msa0968430:CDS | 40.0% |
| AAATTCGATTCCGCTTGTGA+TGG | - | chr6_3:98821440-98821459 | None:intergenic | 40.0% | |
| ACAAGCGGAATCGAATTTGT+TGG | + | chr6_3:98821442-98821461 | Msa0968430:intron | 40.0% | |
| ACGGTGAAAACAAGTTGTTC+AGG | + | chr6_3:98821570-98821589 | Msa0968430:intron | 40.0% | |
| AGAAATCTCACCAATCTCGA+CGG | + | chr6_3:98821836-98821855 | Msa0968430:intron | 40.0% | |
| TCGATTGAAGGAGTAGAAAC+CGG | + | chr6_3:98821879-98821898 | Msa0968430:intron | 40.0% | |
| TCTCATGATTGCATCCGATT+TGG | - | chr6_3:98821927-98821946 | None:intergenic | 40.0% | |
| ATGCAATCATGAGAAGCTGA+AGG | + | chr6_3:98821933-98821952 | Msa0968430:intron | 40.0% | |
| ATCTTCATCAATGTCGGAAG+CGG | + | chr6_3:98821998-98822017 | Msa0968430:intron | 40.0% | |
| CATCATCATCTTCATCCCTA+GGG | + | chr6_3:98822030-98822049 | Msa0968430:intron | 40.0% | |
| GAATCTTTATCATGTGCCGT+AGG | - | chr6_3:98822377-98822396 | None:intergenic | 40.0% | |
| ! | TTGGGGCATCCTTAACTTTA+AGG | - | chr6_3:98822838-98822857 | None:intergenic | 40.0% |
| TTAGGAAGCTAGTGAGCATT+GGG | - | chr6_3:98822856-98822875 | None:intergenic | 40.0% | |
| CTATTGATCAGTTGGTTGAC+AGG | - | chr6_3:98823083-98823102 | None:intergenic | 40.0% | |
| GTCAACCAACTGATCAATAG+AGG | + | chr6_3:98823083-98823102 | Msa0968430:intron | 40.0% | |
| GACAACCTCTATTGATCAGT+TGG | - | chr6_3:98823091-98823110 | None:intergenic | 40.0% | |
| GTTTGTGCACAATCAGTCAA+GGG | - | chr6_3:98823215-98823234 | None:intergenic | 40.0% | |
| AGTTTGTGCACAATCAGTCA+AGG | - | chr6_3:98823216-98823235 | None:intergenic | 40.0% | |
| TCTTTAGGTGGTTAGGGATT+TGG | - | chr6_3:98823241-98823260 | None:intergenic | 40.0% | |
| AGATGAAATACCACATCGGA+AGG | + | chr6_3:98823258-98823277 | Msa0968430:intron | 40.0% | |
| TGAAGTAACAAACTAGTGGG+TGG | + | chr6_3:98823288-98823307 | Msa0968430:intron | 40.0% | |
| AGGGAGTGGAAATCCTATAT+CGG | + | chr6_3:98823391-98823410 | Msa0968430:intron | 40.0% | |
| !! | CTTCTTAGAAGGTGTTGAGA+AGG | - | chr6_3:98823431-98823450 | None:intergenic | 40.0% |
| ! | CTTCTCAACACCTTCTAAGA+AGG | + | chr6_3:98823429-98823448 | Msa0968430:intron | 40.0% |
| ! | TCTCAACACCTTCTAAGAAG+GGG | + | chr6_3:98823431-98823450 | Msa0968430:intron | 40.0% |
| TATATTTGGGAGTGGTAGCT+AGG | - | chr6_3:98823568-98823587 | None:intergenic | 40.0% | |
| ! | GACTAGTGGGAAAGGTATAA+TGG | - | chr6_3:98823962-98823981 | None:intergenic | 40.0% |
| TATGGATGTGGAAGACTAGT+GGG | - | chr6_3:98823975-98823994 | None:intergenic | 40.0% | |
| ATATGGATGTGGAAGACTAG+TGG | - | chr6_3:98823976-98823995 | None:intergenic | 40.0% | |
| CTTCCACATCCATATGTTAG+AGG | + | chr6_3:98823981-98824000 | Msa0968430:intron | 40.0% | |
| ACTCAACAAGTGAGTGAGTA+CGG | + | chr6_3:98824130-98824149 | Msa0968430:intron | 40.0% | |
| TAACAGCACGACAAGGGTTA+AGG | - | chr6_3:98819620-98819639 | None:intergenic | 45.0% | |
| TCATGTTCAAGAAGGTGGTG+CGG | + | chr6_3:98819691-98819710 | Msa0968430:CDS | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | - | chr6_3:98819757-98819776 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | + | chr6_3:98819755-98819774 | Msa0968430:CDS | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | + | chr6_3:98820159-98820178 | Msa0968430:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | + | chr6_3:98820207-98820226 | Msa0968430:CDS | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | + | chr6_3:98820242-98820261 | Msa0968430:CDS | 45.0% | |
| ! | CTGTGCTTCATCAGCTTGTT+GGG | - | chr6_3:98820887-98820906 | None:intergenic | 45.0% |
| ! | CTTTGGTTCAGAAGCTGCTT+TGG | - | chr6_3:98821059-98821078 | None:intergenic | 45.0% |
| ! | TATGTCTCAGAAGCGGGTTT+GGG | - | chr6_3:98821083-98821102 | None:intergenic | 45.0% |
| ! | TTATGTCTCAGAAGCGGGTT+TGG | - | chr6_3:98821084-98821103 | None:intergenic | 45.0% |
| AGCTGCTTATGTCTCAGAAG+CGG | - | chr6_3:98821090-98821109 | None:intergenic | 45.0% | |
| ! | TCTGAGACATAAGCAGCTTC+TGG | + | chr6_3:98821092-98821111 | Msa0968430:intron | 45.0% |
| AGCTGCTTATGTCTCAGAAG+CGG | - | chr6_3:98821090-98821109 | None:intergenic | 45.0% | |
| GCAATCTGCAACGTATGCTA+TGG | + | chr6_3:98821229-98821248 | Msa0968430:intron | 45.0% | |
| ACACAAACCAAATCTTCCGC+CGG | + | chr6_3:98821491-98821510 | Msa0968430:intron | 45.0% | |
| !! | TCAATCGTCGTTTTCGATCC+CGG | - | chr6_3:98821513-98821532 | None:intergenic | 45.0% |
| AACGCGAAGCTGATTGTTGA+CGG | + | chr6_3:98821551-98821570 | Msa0968430:intron | 45.0% | |
| !! | AGATTGAGGAGCGCTGTTTA+CGG | - | chr6_3:98821645-98821664 | None:intergenic | 45.0% |
| GAGCAGCGATTCTTCAATTC+AGG | + | chr6_3:98821720-98821739 | Msa0968430:intron | 45.0% | |
| !! | GATGGATTTTCCGTCGAGAT+TGG | - | chr6_3:98821849-98821868 | None:intergenic | 45.0% |
| GGAGTAGAAACCGGAATGAT+AGG | + | chr6_3:98821888-98821907 | Msa0968430:intron | 45.0% | |
| GCTGAAGGTTCTTGAATTGC+AGG | + | chr6_3:98821948-98821967 | Msa0968430:intron | 45.0% | |
| GCATCATCATCTTCATCCCT+AGG | + | chr6_3:98822029-98822048 | Msa0968430:intron | 45.0% | |
| ! | TAGGAAGCTAGTGAGCATTG+GGG | - | chr6_3:98822855-98822874 | None:intergenic | 45.0% |
| CTTAGGAAGCTAGTGAGCAT+TGG | - | chr6_3:98822857-98822876 | None:intergenic | 45.0% | |
| AAAAAAGACACGCCGTAACG+AGG | + | chr6_3:98822904-98822923 | Msa0968430:intron | 45.0% | |
| ! | TGGCCTTTCTTTGGTTGGTT+GGG | - | chr6_3:98822949-98822968 | None:intergenic | 45.0% |
| ATGGCCTTTCTTTGGTTGGT+TGG | - | chr6_3:98822950-98822969 | None:intergenic | 45.0% | |
| TCTGAAAGTCTCGCAATGAG+CGG | - | chr6_3:98823128-98823147 | None:intergenic | 45.0% | |
| !! | TCACTTTTGTCCTTCCGATG+TGG | - | chr6_3:98823271-98823290 | None:intergenic | 45.0% |
| GTTGGATGCTTCTCCGATAT+AGG | - | chr6_3:98823407-98823426 | None:intergenic | 45.0% | |
| !! | AGAAGGTGTTGAGAAGGAGT+TGG | - | chr6_3:98823425-98823444 | None:intergenic | 45.0% |
| CTCTTCATCCCCTTCTTAGA+AGG | - | chr6_3:98823442-98823461 | None:intergenic | 45.0% | |
| ATGTGGAAGACTAGTGGGAA+AGG | - | chr6_3:98823970-98823989 | None:intergenic | 45.0% | |
| CTCCCTCTAACATATGGATG+TGG | - | chr6_3:98823987-98824006 | None:intergenic | 45.0% | |
| CTGACACTCCCTCTAACATA+TGG | - | chr6_3:98823993-98824012 | None:intergenic | 45.0% | |
| TGTTCTTGCAGATGGCTACT+GGG | + | chr6_3:98824219-98824238 | Msa0968430:intron | 45.0% | |
| TTACATATGAAAGCCGCGGA+AGG | - | chr6_3:98824256-98824275 | None:intergenic | 45.0% | |
| !! | CATTAAATTTAAAAATAAAA+GGG | - | chr6_3:98823824-98823843 | None:intergenic | 5.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | + | chr6_3:98820160-98820179 | Msa0968430:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | + | chr6_3:98820170-98820189 | Msa0968430:CDS | 50.0% |
| ! | GTGAGTGTTTGAGGCAAACC+TGG | - | chr6_3:98820363-98820382 | None:intergenic | 50.0% |
| AGCCTCCCTCAAACTCAAAG+TGG | + | chr6_3:98820737-98820756 | Msa0968430:intron | 50.0% | |
| ! | CTCCACTTTGAGTTTGAGGG+AGG | - | chr6_3:98820742-98820761 | None:intergenic | 50.0% |
| CCTGTGCTTCATCAGCTTGT+TGG | - | chr6_3:98820888-98820907 | None:intergenic | 50.0% | |
| CCAACAAGCTGATGAAGCAC+AGG | + | chr6_3:98820885-98820904 | Msa0968430:intron | 50.0% | |
| TTCCCTTGGATTCCTCATGC+GGG | - | chr6_3:98820911-98820930 | None:intergenic | 50.0% | |
| CTTCCCTTGGATTCCTCATG+CGG | - | chr6_3:98820912-98820931 | None:intergenic | 50.0% | |
| CATGAGGAATCCAAGGGAAG+TGG | + | chr6_3:98820912-98820931 | Msa0968430:intron | 50.0% | |
| AGCTACAACTCCACTTCCCT+TGG | - | chr6_3:98820925-98820944 | None:intergenic | 50.0% | |
| GCTGCTTATGTCTCAGAAGC+GGG | - | chr6_3:98821089-98821108 | None:intergenic | 50.0% | |
| ! | ATGTCTCAGAAGCGGGTTTG+CGG | - | chr6_3:98821082-98821101 | None:intergenic | 50.0% |
| GCTGCTTATGTCTCAGAAGC+GGG | - | chr6_3:98821089-98821108 | None:intergenic | 50.0% | |
| ! | AGGGAGGCATATGTGGATTC+CGG | - | chr6_3:98821403-98821422 | None:intergenic | 50.0% |
| GATGGATACCTTGGGATCGA+GGG | - | chr6_3:98821422-98821441 | None:intergenic | 50.0% | |
| ! | TGATGGATACCTTGGGATCG+AGG | - | chr6_3:98821423-98821442 | None:intergenic | 50.0% |
| !! | CCGCTTGTGATGGATACCTT+GGG | - | chr6_3:98821430-98821449 | None:intergenic | 50.0% |
| ! | CCCAAGGTATCCATCACAAG+CGG | + | chr6_3:98821427-98821446 | Msa0968430:intron | 50.0% |
| !! | TCCGCTTGTGATGGATACCT+TGG | - | chr6_3:98821431-98821450 | None:intergenic | 50.0% |
| CACAAACCAAATCTTCCGCC+GGG | + | chr6_3:98821492-98821511 | Msa0968430:intron | 50.0% | |
| ! | TTTTCCGACGAACAACCACG+AGG | + | chr6_3:98821596-98821615 | Msa0968430:intron | 50.0% |
| TTTGCCTCGTGGTTGTTCGT+CGG | - | chr6_3:98821603-98821622 | None:intergenic | 50.0% | |
| CTTCGTCATACACACTGCTC+CGG | - | chr6_3:98821670-98821689 | None:intergenic | 50.0% | |
| ATCAATGTCGGAAGCGGAAG+CGG | + | chr6_3:98822004-98822023 | Msa0968430:intron | 50.0% | |
| GGTATCAGAGCGATACCCTA+GGG | - | chr6_3:98822048-98822067 | None:intergenic | 50.0% | |
| TGGTATCAGAGCGATACCCT+AGG | - | chr6_3:98822049-98822068 | None:intergenic | 50.0% | |
| ! | TTCTTTGGTTGGTTGGGTGC+TGG | - | chr6_3:98822943-98822962 | None:intergenic | 50.0% |
| GCACCCAACCAACCAAAGAA+AGG | + | chr6_3:98822943-98822962 | Msa0968430:intron | 50.0% | |
| AGGGATGGCCTTTCTTTGGT+TGG | - | chr6_3:98822954-98822973 | None:intergenic | 50.0% | |
| ! | TCAGTCAAGGGTTGGCAACT+GGG | - | chr6_3:98823203-98823222 | None:intergenic | 50.0% |
| ! | ATCAGTCAAGGGTTGGCAAC+TGG | - | chr6_3:98823204-98823223 | None:intergenic | 50.0% |
| GTGCACAATCAGTCAAGGGT+TGG | - | chr6_3:98823211-98823230 | None:intergenic | 50.0% | |
| AATGCTAGCAGACATGCAGC+AGG | + | chr6_3:98823535-98823554 | Msa0968430:intron | 50.0% | |
| GTGTTCTTGCAGATGGCTAC+TGG | + | chr6_3:98824218-98824237 | Msa0968430:intron | 50.0% | |
| TATGAAAGCCGCGGAAGGTA+GGG | - | chr6_3:98824251-98824270 | None:intergenic | 50.0% | |
| ATATGAAAGCCGCGGAAGGT+AGG | - | chr6_3:98824252-98824271 | None:intergenic | 50.0% | |
| GGGCTTACATATGAAAGCCG+CGG | - | chr6_3:98824260-98824279 | None:intergenic | 50.0% | |
| ! | CAGAAGCGGGTTTGGGACTT+TGG | - | chr6_3:98821076-98821095 | None:intergenic | 55.0% |
| !! | CAGAAGCGGGTTTGCGGTTT+TGG | - | chr6_3:98821145-98821164 | None:intergenic | 55.0% |
| ATATGCCTCCCTCGATCCCA+AGG | + | chr6_3:98821411-98821430 | Msa0968430:intron | 55.0% | |
| TTCGATCCCGGCGGAAGATT+TGG | - | chr6_3:98821501-98821520 | None:intergenic | 55.0% | |
| !! | ATCGTCGTTTTCGATCCCGG+CGG | - | chr6_3:98821510-98821529 | None:intergenic | 55.0% |
| ! | CCTTGAGGCTTTTTGCCTCG+TGG | - | chr6_3:98821614-98821633 | None:intergenic | 55.0% |
| CCACGAGGCAAAAAGCCTCA+AGG | + | chr6_3:98821611-98821630 | Msa0968430:intron | 55.0% | |
| CGAGGCAAAAAGCCTCAAGG+CGG | + | chr6_3:98821614-98821633 | Msa0968430:intron | 55.0% | |
| !! | TTGAGGAGCGCTGTTTACGG+TGG | - | chr6_3:98821642-98821661 | None:intergenic | 55.0% |
| ACAGCGCTCCTCAATCTCAC+CGG | + | chr6_3:98821648-98821667 | Msa0968430:intron | 55.0% | |
| ACACTGCTCCGGTGAGATTG+AGG | - | chr6_3:98821659-98821678 | None:intergenic | 55.0% | |
| AAAGACACGCCGTAACGAGG+AGG | + | chr6_3:98822907-98822926 | Msa0968430:intron | 55.0% | |
| GTGCAGGGATGGCCTTTCTT+TGG | - | chr6_3:98822958-98822977 | None:intergenic | 55.0% | |
| AGCCGACATCGTTGGGTGAT+GGG | - | chr6_3:98822986-98823005 | None:intergenic | 55.0% | |
| GTGTTGGAGCCGACATCGTT+GGG | - | chr6_3:98822993-98823012 | None:intergenic | 55.0% | |
| TGTGTTGGAGCCGACATCGT+TGG | - | chr6_3:98822994-98823013 | None:intergenic | 55.0% | |
| CGCAATGAGCGGATCTTCTC+TGG | - | chr6_3:98823117-98823136 | None:intergenic | 55.0% | |
| ! | GGTTTTTCCCCTACCTTCCG+CGG | + | chr6_3:98824240-98824259 | Msa0968430:CDS | 55.0% |
| ATGAAAGCCGCGGAAGGTAG+GGG | - | chr6_3:98824250-98824269 | None:intergenic | 55.0% | |
| ATGAAGCACAGGCCCGCATG+AGG | + | chr6_3:98820896-98820915 | Msa0968430:intron | 60.0% | |
| AGGCCCGCATGAGGAATCCA+AGG | + | chr6_3:98820905-98820924 | Msa0968430:intron | 60.0% | |
| GGCCCGCATGAGGAATCCAA+GGG | + | chr6_3:98820906-98820925 | Msa0968430:intron | 60.0% | |
| ! | GGGATCGAGGGAGGCATATG+TGG | - | chr6_3:98821410-98821429 | None:intergenic | 60.0% |
| GGATACCTTGGGATCGAGGG+AGG | - | chr6_3:98821419-98821438 | None:intergenic | 60.0% | |
| ACACGCCGTAACGAGGAGGA+CGG | + | chr6_3:98822911-98822930 | Msa0968430:intron | 60.0% | |
| GTTGGCCGTCCTCCTCGTTA+CGG | - | chr6_3:98822919-98822938 | None:intergenic | 60.0% | |
| !! | GGTTGGTTGGGTGCTGGAGT+TGG | - | chr6_3:98822937-98822956 | None:intergenic | 60.0% |
| !! | CGACATCGTTGGGTGATGGG+GGG | - | chr6_3:98822983-98823002 | None:intergenic | 60.0% |
| ! | CCGACATCGTTGGGTGATGG+GGG | - | chr6_3:98822984-98823003 | None:intergenic | 60.0% |
| CCCCCATCACCCAACGATGT+CGG | + | chr6_3:98822981-98823000 | Msa0968430:intron | 60.0% | |
| GCCGACATCGTTGGGTGATG+GGG | - | chr6_3:98822985-98823004 | None:intergenic | 60.0% | |
| GAGCCGACATCGTTGGGTGA+TGG | - | chr6_3:98822987-98823006 | None:intergenic | 60.0% | |
| TTTACGGTGGCGCCGCCTTG+AGG | - | chr6_3:98821629-98821648 | None:intergenic | 65.0% | |
| GATGGGGGGTAGTGCAGGGA+TGG | - | chr6_3:98822969-98822988 | None:intergenic | 65.0% | |
| !! | GGGTGATGGGGGGTAGTGCA+GGG | - | chr6_3:98822973-98822992 | None:intergenic | 65.0% |
| !! | TGGGTGATGGGGGGTAGTGC+AGG | - | chr6_3:98822974-98822993 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 98819610 | 98824318 | 98819610 | ID=Msa0968430;Name=Msa0968430 |
| chr6_3 | mRNA | 98819610 | 98824318 | 98819610 | ID=Msa0968430-mRNA-1;Parent=Msa0968430;Name=Msa0968430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|280 |
| chr6_3 | exon | 98819610 | 98820363 | 98819610 | ID=Msa0968430-mRNA-1:exon:18588;Parent=Msa0968430-mRNA-1 |
| chr6_3 | exon | 98824230 | 98824318 | 98824230 | ID=Msa0968430-mRNA-1:exon:18589;Parent=Msa0968430-mRNA-1 |
| chr6_3 | CDS | 98819610 | 98820363 | 98819610 | ID=Msa0968430-mRNA-1:cds;Parent=Msa0968430-mRNA-1 |
| chr6_3 | CDS | 98824230 | 98824318 | 98824230 | ID=Msa0968430-mRNA-1:cds;Parent=Msa0968430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
