Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229630 | AES59897.2 | 75.314 | 239 | 50 | 7 | 15 | 248 | 15 | 249 | 6.98e-108 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229630 | G7I977 | 75.314 | 239 | 50 | 7 | 15 | 248 | 15 | 249 | 3.33e-108 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011790 | Msa0229630 | 0.826825 | 2.192799e-54 | -8.615850e-47 |
| Msa0021340 | Msa0229630 | 0.825171 | 5.420581e-54 | -8.615850e-47 |
| Msa0060790 | Msa0229630 | 0.822711 | 2.046243e-53 | -8.615850e-47 |
| Msa0152110 | Msa0229630 | 0.805643 | 1.208880e-49 | -8.615850e-47 |
| Msa0229630 | Msa0968410 | 0.852751 | 3.758103e-61 | -8.615850e-47 |
| Msa0229630 | Msa0968430 | 0.947655 | 4.408917e-106 | -8.615850e-47 |
| Msa0229630 | Msa1389180 | 0.842598 | 2.345310e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229630 | MtrunA17_Chr1g0160711 | 75.107 | 233 | 50 | 6 | 21 | 248 | 17 | 246 | 2.49e-110 | 332 |
| Msa0229630 | MtrunA17_Chr1g0160761 | 69.380 | 258 | 64 | 6 | 1 | 248 | 1 | 253 | 1.05e-108 | 328 |
| Msa0229630 | MtrunA17_Chr1g0160721 | 60.870 | 253 | 86 | 5 | 1 | 251 | 12 | 253 | 1.25e-88 | 277 |
| Msa0229630 | MtrunA17_Chr1g0160661 | 57.708 | 253 | 94 | 5 | 1 | 251 | 27 | 268 | 6.76e-85 | 262 |
| Msa0229630 | MtrunA17_Chr1g0160561 | 52.471 | 263 | 103 | 8 | 2 | 250 | 7 | 261 | 4.11e-76 | 244 |
| Msa0229630 | MtrunA17_Chr1g0160701 | 58.264 | 242 | 78 | 11 | 17 | 246 | 32 | 262 | 3.11e-70 | 228 |
| Msa0229630 | MtrunA17_Chr1g0157791 | 33.840 | 263 | 141 | 11 | 7 | 247 | 6 | 257 | 1.12e-28 | 115 |
| Msa0229630 | MtrunA17_Chr1g0158061 | 35.321 | 218 | 119 | 9 | 28 | 232 | 29 | 237 | 4.50e-28 | 109 |
| Msa0229630 | MtrunA17_Chr1g0158151 | 33.333 | 285 | 151 | 14 | 1 | 256 | 1 | 275 | 1.61e-27 | 111 |
| Msa0229630 | MtrunA17_Chr1g0157961 | 35.426 | 223 | 123 | 8 | 24 | 233 | 33 | 247 | 6.05e-27 | 106 |
| Msa0229630 | MtrunA17_Chr1g0157991 | 35.683 | 227 | 121 | 8 | 24 | 233 | 28 | 246 | 1.60e-26 | 108 |
| Msa0229630 | MtrunA17_Chr1g0158191 | 33.721 | 258 | 122 | 14 | 10 | 234 | 4 | 245 | 2.88e-26 | 108 |
| Msa0229630 | MtrunA17_Chr3g0088331 | 32.653 | 245 | 129 | 10 | 24 | 253 | 36 | 259 | 4.81e-25 | 100 |
| Msa0229630 | MtrunA17_Chr1g0158411 | 31.839 | 223 | 121 | 8 | 26 | 234 | 46 | 251 | 1.40e-22 | 97.4 |
| Msa0229630 | MtrunA17_Chr1g0158041 | 32.184 | 261 | 137 | 10 | 26 | 255 | 28 | 279 | 1.87e-22 | 97.1 |
| Msa0229630 | MtrunA17_Chr1g0158761 | 32.520 | 246 | 126 | 11 | 1 | 234 | 1 | 218 | 4.69e-22 | 95.9 |
| Msa0229630 | MtrunA17_Chr6g0467711 | 33.203 | 256 | 127 | 13 | 3 | 234 | 12 | 247 | 5.73e-22 | 95.5 |
| Msa0229630 | MtrunA17_Chr1g0158461 | 29.478 | 268 | 145 | 11 | 1 | 234 | 17 | 274 | 6.26e-22 | 93.2 |
| Msa0229630 | MtrunA17_Chr1g0157881 | 29.514 | 288 | 130 | 12 | 8 | 234 | 34 | 309 | 2.49e-21 | 93.6 |
| Msa0229630 | MtrunA17_Chr1g0158731 | 29.555 | 247 | 145 | 10 | 4 | 234 | 8 | 241 | 1.49e-20 | 89.4 |
| Msa0229630 | MtrunA17_Chr1g0158331 | 29.811 | 265 | 141 | 13 | 1 | 234 | 17 | 267 | 2.40e-19 | 86.3 |
| Msa0229630 | MtrunA17_Chr1g0158541 | 32.389 | 247 | 138 | 11 | 5 | 234 | 16 | 250 | 1.21e-18 | 85.9 |
| Msa0229630 | MtrunA17_Chr1g0158661 | 27.407 | 270 | 158 | 9 | 7 | 257 | 17 | 267 | 3.22e-18 | 84.3 |
| Msa0229630 | MtrunA17_Chr1g0158631 | 28.938 | 273 | 145 | 12 | 7 | 251 | 17 | 268 | 5.59e-18 | 83.6 |
| Msa0229630 | MtrunA17_Chr1g0157861 | 26.518 | 313 | 140 | 15 | 18 | 269 | 29 | 312 | 2.36e-17 | 82.0 |
| Msa0229630 | MtrunA17_Chr1g0157911 | 30.000 | 230 | 125 | 11 | 27 | 234 | 35 | 250 | 3.56e-17 | 81.3 |
| Msa0229630 | MtrunA17_Chr1g0158121 | 48.148 | 81 | 36 | 2 | 24 | 103 | 29 | 104 | 5.96e-15 | 70.1 |
| Msa0229630 | MtrunA17_Chr1g0158301 | 28.862 | 246 | 144 | 10 | 5 | 234 | 18 | 248 | 6.05e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | 2_2:+1383540 | Msa0229630:CDS |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | 2_2:+1383541 | Msa0229630:CDS |
| TTTATGGATTTGAACTTTCT+TGG | 0.219600 | 2_2:+1383886 | Msa0229630:CDS |
| CATTATTGTCCTCACATAAT+AGG | 0.236387 | 2_2:-1383401 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | 2_2:+1383491 | Msa0229630:CDS |
| GTGTTCTTGCAGATGGCTAC+TGG | 0.268248 | 2_2:+1387838 | Msa0229630:intron |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | 2_2:-1383372 | None:intergenic |
| TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | 2_2:-1383546 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 2_2:+1383771 | Msa0229630:CDS |
| CTCAATAGTCTTTGTAATGA+AGG | 0.356928 | 2_2:+1383909 | Msa0229630:CDS |
| TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | 2_2:-1387907 | None:intergenic |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 2_2:+1383778 | Msa0229630:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 2_2:+1383788 | Msa0229630:CDS |
| CAGCATTTATGTATAGATCC+AGG | 0.447944 | 2_2:+1383960 | Msa0229630:CDS |
| TATGAAAGCCGCGGAAGGTA+GGG | 0.458004 | 2_2:-1387868 | None:intergenic |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | 2_2:-1383602 | None:intergenic |
| TAACAGCACGACAAGGGTTA+AGG | 0.463192 | 2_2:-1383235 | None:intergenic |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | 2_2:+1383825 | Msa0229630:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | 2_2:+1383738 | Msa0229630:CDS |
| TGTTCTTGCAGATGGCTACT+GGG | 0.473780 | 2_2:+1387839 | Msa0229630:intron |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | 2_2:+1383735 | Msa0229630:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 2_2:+1383777 | Msa0229630:CDS |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | 2_2:-1383598 | None:intergenic |
| CGGTCGGAATATATTGATGA+AGG | 0.526826 | 2_2:+1383678 | Msa0229630:CDS |
| ATATGAAAGCCGCGGAAGGT+AGG | 0.528563 | 2_2:-1387869 | None:intergenic |
| CTGGATCTATACATAAATGC+TGG | 0.539585 | 2_2:-1383959 | None:intergenic |
| TTCTACAGACATGCGTCGAA+TGG | 0.543277 | 2_2:+1383860 | Msa0229630:CDS |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | 2_2:-1383538 | None:intergenic |
| ATGAAAGCCGCGGAAGGTAG+GGG | 0.556160 | 2_2:-1387867 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | 2_2:+1383811 | Msa0229630:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | 2_2:-1383542 | None:intergenic |
| ATTGTAATCCAATAGTCGTA+TGG | 0.577306 | 2_2:-1383499 | None:intergenic |
| TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | 2_2:+1383270 | Msa0229630:CDS |
| AACAAGAGTCATGTTCAAGA+AGG | 0.596613 | 2_2:+1383301 | Msa0229630:CDS |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | 2_2:-1383834 | None:intergenic |
| AAGAGTCATGTTCAAGAAGG+TGG | 0.600098 | 2_2:+1383304 | Msa0229630:CDS |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | 2_2:-1383592 | None:intergenic |
| TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | 2_2:-1387898 | None:intergenic |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | 2_2:+1383373 | Msa0229630:CDS |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | 2_2:-1383543 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | 2_2:-1383597 | None:intergenic |
| GTATTAGTAACAGCACGACA+AGG | 0.628217 | 2_2:-1383242 | None:intergenic |
| TCGGAATATATTGATGAAGG+TGG | 0.639500 | 2_2:+1383681 | Msa0229630:CDS |
| TTACATATGAAAGCCGCGGA+AGG | 0.648203 | 2_2:-1387873 | None:intergenic |
| TATTAGTAACAGCACGACAA+GGG | 0.651789 | 2_2:-1383241 | None:intergenic |
| CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | 2_2:-1387897 | None:intergenic |
| TATGAATTTGAAGAACACCA+TGG | 0.674399 | 2_2:+1383438 | Msa0229630:CDS |
| GAGGTACAACCTATTATGTG+AGG | 0.678478 | 2_2:+1383392 | Msa0229630:CDS |
| TCATGTTCAAGAAGGTGGTG+CGG | 0.678993 | 2_2:+1383309 | Msa0229630:CDS |
| GGGCTTACATATGAAAGCCG+CGG | 0.686004 | 2_2:-1387877 | None:intergenic |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 2_2:+1383363 | Msa0229630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTTATATTA+TGG | + | chr2_2:1384019-1384038 | Msa0229630:intron | 0.0% |
| !!! | TTTTTTTTTATTTATATTAT+GGG | + | chr2_2:1384020-1384039 | Msa0229630:intron | 0.0% |
| !! | TTTCCAAATAAATTATATTT+GGG | + | chr2_2:1386389-1386408 | Msa0229630:intron | 10.0% |
| !! | GCATTAAATTTAAAAATAAA+AGG | - | chr2_2:1387445-1387464 | None:intergenic | 10.0% |
| !!! | CTATTTTTTTTTTTTGTGAT+GGG | - | chr2_2:1386184-1386203 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTTTTTTTGTGA+TGG | - | chr2_2:1386185-1386204 | None:intergenic | 15.0% |
| !! | GTTTCCAAATAAATTATATT+TGG | + | chr2_2:1386388-1386407 | Msa0229630:intron | 15.0% |
| !! | TTCCAAATAAATTATATTTG+GGG | + | chr2_2:1386390-1386409 | Msa0229630:intron | 15.0% |
| !!! | AGTTACTTGTTTTTTTTTTT+GGG | - | chr2_2:1386435-1386454 | None:intergenic | 15.0% |
| !!! | TGTTACATTTATTTAGTTTT+TGG | + | chr2_2:1387260-1387279 | Msa0229630:intron | 15.0% |
| !! | GTAAATAAGAGAAAAATTAA+GGG | - | chr2_2:1387560-1387579 | None:intergenic | 15.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | - | chr2_2:1383458-1383477 | None:intergenic | 20.0% |
| !! | TTAAGAATTGTAGATTCATA+GGG | + | chr2_2:1384061-1384080 | Msa0229630:intron | 20.0% |
| !! | TCAAACTAATCTCTATATAT+AGG | - | chr2_2:1384208-1384227 | None:intergenic | 20.0% |
| !! | ATAAGAACTAAGTAAAACAA+AGG | + | chr2_2:1384435-1384454 | Msa0229630:intron | 20.0% |
| !! | TAAGAACTAAGTAAAACAAA+GGG | + | chr2_2:1384436-1384455 | Msa0229630:intron | 20.0% |
| !! | TTAAGAATTGTAGATTCATA+GGG | + | chr2_2:1384061-1384080 | Msa0229630:intron | 20.0% |
| !! | TCAAACTAATCTCTATATAT+AGG | - | chr2_2:1384208-1384227 | None:intergenic | 20.0% |
| !! | TACCCCAAATATAATTTATT+TGG | - | chr2_2:1386395-1386414 | None:intergenic | 20.0% |
| !!! | GAGTTACTTGTTTTTTTTTT+TGG | - | chr2_2:1386436-1386455 | None:intergenic | 20.0% |
| !! | TTCAATTTGAAGAGATTTAA+GGG | + | chr2_2:1386992-1387011 | Msa0229630:intron | 20.0% |
| !! | AATTTGTATTGTATCAATGT+AGG | - | chr2_2:1387119-1387138 | None:intergenic | 20.0% |
| !!! | GAGCATGTATTTTTATATTT+GGG | - | chr2_2:1387201-1387220 | None:intergenic | 20.0% |
| !!! | TGAGCATGTATTTTTATATT+TGG | - | chr2_2:1387202-1387221 | None:intergenic | 20.0% |
| !!! | GAAGAAATTGAGATATTTTA+AGG | + | chr2_2:1387291-1387310 | Msa0229630:intron | 20.0% |
| !!! | AGTATCTAGTTTAGTAATTT+TGG | - | chr2_2:1387375-1387394 | None:intergenic | 20.0% |
| !! | TACTAAACTAGATACTAAAA+TGG | + | chr2_2:1387379-1387398 | Msa0229630:intron | 20.0% |
| !! | TAGATACTAAAATGGATAAA+GGG | + | chr2_2:1387387-1387406 | Msa0229630:intron | 20.0% |
| !! | GGTAAATAAGAGAAAAATTA+AGG | - | chr2_2:1387561-1387580 | None:intergenic | 20.0% |
| !! | TATATCCATTGTAAACAAAT+TGG | + | chr2_2:1387785-1387804 | Msa0229630:intron | 20.0% |
| ! | TATATGTGAGCTGTAAAAAT+CGG | + | chr2_2:1383658-1383677 | Msa0229630:CDS | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | + | chr2_2:1383765-1383784 | Msa0229630:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | + | chr2_2:1383886-1383905 | Msa0229630:CDS | 25.0% |
| ! | GTTAAGAATTGTAGATTCAT+AGG | + | chr2_2:1384060-1384079 | Msa0229630:intron | 25.0% |
| ! | ATTGTATTCCAAACTCAAAT+TGG | - | chr2_2:1384390-1384409 | None:intergenic | 25.0% |
| ! | GTGTAAACTAGTAAAACAAA+AGG | + | chr2_2:1384458-1384477 | Msa0229630:intron | 25.0% |
| ! | TAAGATTCAAGAGAATTTCA+TGG | + | chr2_2:1384931-1384950 | Msa0229630:intron | 25.0% |
| ! | TGAATCTACAATTCTTAACA+TGG | - | chr2_2:1384059-1384078 | None:intergenic | 25.0% |
| ! | GTTAAGAATTGTAGATTCAT+AGG | + | chr2_2:1384060-1384079 | Msa0229630:intron | 25.0% |
| ! | CATGTTGTTAAAATAATTGG+AGG | - | chr2_2:1385969-1385988 | None:intergenic | 25.0% |
| ! | GCACATGTTGTTAAAATAAT+TGG | - | chr2_2:1385972-1385991 | None:intergenic | 25.0% |
| ! | GATATAATAGTACAAGAAGT+GGG | + | chr2_2:1386232-1386251 | Msa0229630:intron | 25.0% |
| !!! | TTGTCAAAATGGTCTTATTT+AGG | - | chr2_2:1386279-1386298 | None:intergenic | 25.0% |
| ! | GTTATGTATGTTTGTCAAAA+TGG | - | chr2_2:1386290-1386309 | None:intergenic | 25.0% |
| !!! | CATATCATGTGTGTTTTTTT+TGG | - | chr2_2:1386951-1386970 | None:intergenic | 25.0% |
| ! | CAAAAAAAACACACATGATA+TGG | + | chr2_2:1386949-1386968 | Msa0229630:intron | 25.0% |
| ! | CTTCAATTTGAAGAGATTTA+AGG | + | chr2_2:1386991-1387010 | Msa0229630:intron | 25.0% |
| ! | AAATCACTTGGGATTTAATT+GGG | - | chr2_2:1387094-1387113 | None:intergenic | 25.0% |
| !!! | TGTATTTTTATATTTGGGAG+TGG | - | chr2_2:1387196-1387215 | None:intergenic | 25.0% |
| ! | CTAGATACTAAAATGGATAA+AGG | + | chr2_2:1387386-1387405 | Msa0229630:intron | 25.0% |
| ! | AGATACTAAAATGGATAAAG+GGG | + | chr2_2:1387388-1387407 | Msa0229630:intron | 25.0% |
| !! | AAATGCAACTTTTATCTAGT+GGG | + | chr2_2:1387485-1387504 | Msa0229630:intron | 25.0% |
| ! | TTCTATTACCATTTCGAAAT+TGG | + | chr2_2:1387693-1387712 | Msa0229630:intron | 25.0% |
| !! | AACTACCAATTTGTTTACAA+TGG | - | chr2_2:1387793-1387812 | None:intergenic | 25.0% |
| ! | TTTAGCATGTCTTGAATTAA+GGG | - | chr2_2:1387910-1387929 | None:intergenic | 25.0% |
| !! | TTTTAGCATGTCTTGAATTA+AGG | - | chr2_2:1387911-1387930 | None:intergenic | 25.0% |
| CATTATTGTCCTCACATAAT+AGG | - | chr2_2:1383404-1383423 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | + | chr2_2:1383438-1383457 | Msa0229630:CDS | 30.0% | |
| ATTGTAATCCAATAGTCGTA+TGG | - | chr2_2:1383502-1383521 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | - | chr2_2:1383541-1383560 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | + | chr2_2:1383540-1383559 | Msa0229630:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | + | chr2_2:1383541-1383560 | Msa0229630:CDS | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | - | chr2_2:1383549-1383568 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | - | chr2_2:1383600-1383619 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | - | chr2_2:1383605-1383624 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | + | chr2_2:1383735-1383754 | Msa0229630:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | - | chr2_2:1383767-1383786 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | + | chr2_2:1383764-1383783 | Msa0229630:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | + | chr2_2:1383811-1383830 | Msa0229630:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | - | chr2_2:1383837-1383856 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+AGG | + | chr2_2:1383909-1383928 | Msa0229630:CDS | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+AGG | - | chr2_2:1383990-1384009 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | + | chr2_2:1383990-1384009 | Msa0229630:intron | 30.0% | |
| !! | AAGCATAAGAGTATTCATGA+GGG | + | chr2_2:1384113-1384132 | Msa0229630:intron | 30.0% |
| AGGTTATGTGAAGTTAGTTA+AGG | - | chr2_2:1384321-1384340 | None:intergenic | 30.0% | |
| ! | GAAATTCACCAATTTGAGTT+TGG | + | chr2_2:1384379-1384398 | Msa0229630:intron | 30.0% |
| ! | GTACAGCTTCTGAAAAAAAA+CGG | + | chr2_2:1384608-1384627 | Msa0229630:intron | 30.0% |
| CATGGATTTCATGAATTTCA+TGG | + | chr2_2:1384949-1384968 | Msa0229630:intron | 30.0% | |
| TTTCATGGATCCTGAAAATT+TGG | + | chr2_2:1384964-1384983 | Msa0229630:intron | 30.0% | |
| TTCATGGATCCTGAAAATTT+GGG | + | chr2_2:1384965-1384984 | Msa0229630:intron | 30.0% | |
| ! | TCTTGATTTCCCAAATTTTC+AGG | - | chr2_2:1384977-1384996 | None:intergenic | 30.0% |
| ATGAAAGGAAGAGATTTAAC+CGG | + | chr2_2:1384999-1385018 | Msa0229630:intron | 30.0% | |
| ATCTTCATCTTCATCAATGT+CGG | + | chr2_2:1385610-1385629 | Msa0229630:intron | 30.0% | |
| !! | AAGCATAAGAGTATTCATGA+GGG | + | chr2_2:1384113-1384132 | Msa0229630:intron | 30.0% |
| AGGTTATGTGAAGTTAGTTA+AGG | - | chr2_2:1384321-1384340 | None:intergenic | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | + | chr2_2:1386091-1386110 | Msa0229630:intron | 30.0% |
| CGATATAATAGTACAAGAAG+TGG | + | chr2_2:1386231-1386250 | Msa0229630:intron | 30.0% | |
| CAAGTAACTCCTTAAAGTTA+AGG | + | chr2_2:1386446-1386465 | Msa0229630:intron | 30.0% | |
| ! | GCTTTCTTTTACATGATTTC+AGG | - | chr2_2:1386504-1386523 | None:intergenic | 30.0% |
| !! | TGTTTGGTTTGACTTTAGTT+TGG | - | chr2_2:1386790-1386809 | None:intergenic | 30.0% |
| ATTTCATCTTTAGGTGGTTA+GGG | - | chr2_2:1386867-1386886 | None:intergenic | 30.0% | |
| TATTTCATCTTTAGGTGGTT+AGG | - | chr2_2:1386868-1386887 | None:intergenic | 30.0% | |
| CTAAAGATGAAATACCACAT+CGG | + | chr2_2:1386874-1386893 | Msa0229630:intron | 30.0% | |
| AAAGTGAAGTAACAAACTAG+TGG | + | chr2_2:1386904-1386923 | Msa0229630:intron | 30.0% | |
| AAGTGAAGTAACAAACTAGT+GGG | + | chr2_2:1386905-1386924 | Msa0229630:intron | 30.0% | |
| !!! | GTGTGTTTTTTTTGGTTTTG+CGG | - | chr2_2:1386943-1386962 | None:intergenic | 30.0% |
| AATCACTTGGGATTTAATTG+GGG | - | chr2_2:1387093-1387112 | None:intergenic | 30.0% | |
| GAAATCACTTGGGATTTAAT+TGG | - | chr2_2:1387095-1387114 | None:intergenic | 30.0% | |
| ! | GAAATGCAACTTTTATCTAG+TGG | + | chr2_2:1387484-1387503 | Msa0229630:intron | 30.0% |
| ATGTAACACCAATTTCGAAA+TGG | - | chr2_2:1387704-1387723 | None:intergenic | 30.0% | |
| TATTAGTAACAGCACGACAA+GGG | - | chr2_2:1383244-1383263 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | + | chr2_2:1383301-1383320 | Msa0229630:CDS | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | + | chr2_2:1383337-1383356 | Msa0229630:CDS | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | - | chr2_2:1383350-1383369 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | - | chr2_2:1383545-1383564 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | - | chr2_2:1383546-1383565 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | - | chr2_2:1383601-1383620 | None:intergenic | 35.0% | |
| TCGGAATATATTGATGAAGG+TGG | + | chr2_2:1383681-1383700 | Msa0229630:CDS | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | + | chr2_2:1383738-1383757 | Msa0229630:CDS | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | - | chr2_2:1383962-1383981 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | + | chr2_2:1383960-1383979 | Msa0229630:CDS | 35.0% | |
| TTCATAGGGATGAAGATCAT+AGG | + | chr2_2:1384075-1384094 | Msa0229630:intron | 35.0% | |
| !! | CAAGCATAAGAGTATTCATG+AGG | + | chr2_2:1384112-1384131 | Msa0229630:intron | 35.0% |
| CTAAACTAGAGTTAGTAGCT+TGG | - | chr2_2:1384256-1384275 | None:intergenic | 35.0% | |
| GAGGCTGTTAAAATAATTGG+AGG | - | chr2_2:1384341-1384360 | None:intergenic | 35.0% | |
| AGGGAGGCTGTTAAAATAAT+TGG | - | chr2_2:1384344-1384363 | None:intergenic | 35.0% | |
| ! | TTTCTCCACTTTGAGTTTGA+GGG | - | chr2_2:1384363-1384382 | None:intergenic | 35.0% |
| ! | ATTTCTCCACTTTGAGTTTG+AGG | - | chr2_2:1384364-1384383 | None:intergenic | 35.0% |
| !!! | TTTTTTCAGAAGCTGTACTC+AGG | - | chr2_2:1384606-1384625 | None:intergenic | 35.0% |
| TCAAATCTTCTTGTAGCTTC+TGG | + | chr2_2:1384736-1384755 | Msa0229630:intron | 35.0% | |
| ! | TAGTAAGAAAAGTGCGTTCT+TGG | - | chr2_2:1384913-1384932 | None:intergenic | 35.0% |
| TGGGAAATCAAGAGAATGAA+AGG | + | chr2_2:1384984-1385003 | Msa0229630:intron | 35.0% | |
| !!! | TCGAATTTGTTGGAGAGTTT+TGG | + | chr2_2:1385070-1385089 | Msa0229630:intron | 35.0% |
| !! | TTTCGTTGTTTCTGAAGCAT+CGG | - | chr2_2:1385315-1385334 | None:intergenic | 35.0% |
| ! | ACGGAAAATCCATCGAATTT+TGG | + | chr2_2:1385473-1385492 | Msa0229630:intron | 35.0% |
| TCAATCGAACCAAAATTCGA+TGG | - | chr2_2:1385485-1385504 | None:intergenic | 35.0% | |
| !!! | TCGAATTTTGGTTCGATTGA+AGG | + | chr2_2:1385485-1385504 | Msa0229630:intron | 35.0% |
| TTTCGATTCTCCTATCATTC+CGG | - | chr2_2:1385519-1385538 | None:intergenic | 35.0% | |
| GAGAATCGAAACTACCAAAT+CGG | + | chr2_2:1385528-1385547 | Msa0229630:intron | 35.0% | |
| TTCATAGGGATGAAGATCAT+AGG | + | chr2_2:1384075-1384094 | Msa0229630:intron | 35.0% | |
| !! | CAAGCATAAGAGTATTCATG+AGG | + | chr2_2:1384112-1384131 | Msa0229630:intron | 35.0% |
| CTAAACTAGAGTTAGTAGCT+TGG | - | chr2_2:1384256-1384275 | None:intergenic | 35.0% | |
| ! | TTTTAACAACATGTGCCCTA+CGG | + | chr2_2:1385976-1385995 | Msa0229630:intron | 35.0% |
| AATCTTTATCATGTGCCGTA+GGG | - | chr2_2:1385994-1386013 | None:intergenic | 35.0% | |
| AGAAGTGGGAAATACTTCTA+TGG | + | chr2_2:1386246-1386265 | Msa0229630:intron | 35.0% | |
| ACACGCACACAACTTAAAAT+AGG | - | chr2_2:1386370-1386389 | None:intergenic | 35.0% | |
| ! | ACATGATTTCAGGTATGCTT+AGG | - | chr2_2:1386494-1386513 | None:intergenic | 35.0% |
| !! | TATTAGTGTTGGTCTTGTGT+TGG | - | chr2_2:1386629-1386648 | None:intergenic | 35.0% |
| ACAAGACCAACACTAATAGT+AGG | + | chr2_2:1386631-1386650 | Msa0229630:intron | 35.0% | |
| CATGTACCTACTATTAGTGT+TGG | - | chr2_2:1386640-1386659 | None:intergenic | 35.0% | |
| CAACACTAATAGTAGGTACA+TGG | + | chr2_2:1386638-1386657 | Msa0229630:intron | 35.0% | |
| TCGTATTGGAAGTAGTTTCT+TGG | - | chr2_2:1386671-1386690 | None:intergenic | 35.0% | |
| ! | ACAGGGAGAAATTTTCGTAT+TGG | - | chr2_2:1386685-1386704 | None:intergenic | 35.0% |
| TATTGATCAGTTGGTTGACA+GGG | - | chr2_2:1386702-1386721 | None:intergenic | 35.0% | |
| TTTCAGACACACCATACAAT+AGG | + | chr2_2:1386761-1386780 | Msa0229630:intron | 35.0% | |
| TAGTTTGGAAGCCTATTGTA+TGG | - | chr2_2:1386775-1386794 | None:intergenic | 35.0% | |
| ! | ACTGGGTAGTAGTTTTTGTT+TGG | - | chr2_2:1386806-1386825 | None:intergenic | 35.0% |
| TGTGGTATTTCATCTTTAGG+TGG | - | chr2_2:1386873-1386892 | None:intergenic | 35.0% | |
| CGATGTGGTATTTCATCTTT+AGG | - | chr2_2:1386876-1386895 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTTTGGTTTTGCGG+AGG | - | chr2_2:1386940-1386959 | None:intergenic | 35.0% |
| TTTGAAGAGATTTAAGGGAG+TGG | + | chr2_2:1386997-1387016 | Msa0229630:intron | 35.0% | |
| ! | TTCTCAACACCTTCTAAGAA+GGG | + | chr2_2:1387050-1387069 | Msa0229630:intron | 35.0% |
| CAATGTAGGTGAAATCACTT+GGG | - | chr2_2:1387105-1387124 | None:intergenic | 35.0% | |
| TCAATGTAGGTGAAATCACT+TGG | - | chr2_2:1387106-1387125 | None:intergenic | 35.0% | |
| TTCCACATCCATATGTTAGA+GGG | + | chr2_2:1387602-1387621 | Msa0229630:intron | 35.0% | |
| GCAAGAACACAGAAAAAAGA+TGG | - | chr2_2:1387828-1387847 | None:intergenic | 35.0% | |
| ! | TTTTTCTGTGTTCTTGCAGA+TGG | + | chr2_2:1387831-1387850 | Msa0229630:intron | 35.0% |
| CTTGAATTAAGGGAATGTGA+GGG | - | chr2_2:1387900-1387919 | None:intergenic | 35.0% | |
| TCTTGAATTAAGGGAATGTG+AGG | - | chr2_2:1387901-1387920 | None:intergenic | 35.0% | |
| GTATTAGTAACAGCACGACA+AGG | - | chr2_2:1383245-1383264 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | + | chr2_2:1383270-1383289 | Msa0229630:CDS | 40.0% | |
| AAGAGTCATGTTCAAGAAGG+TGG | + | chr2_2:1383304-1383323 | Msa0229630:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | - | chr2_2:1383351-1383370 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | - | chr2_2:1383354-1383373 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | + | chr2_2:1383363-1383382 | Msa0229630:CDS | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | + | chr2_2:1383392-1383411 | Msa0229630:CDS | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | + | chr2_2:1383491-1383510 | Msa0229630:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | - | chr2_2:1383595-1383614 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | + | chr2_2:1383594-1383613 | Msa0229630:CDS | 40.0% |
| TGTGAGCTGTAAAAATCGGT+CGG | + | chr2_2:1383662-1383681 | Msa0229630:CDS | 40.0% | |
| CGGTCGGAATATATTGATGA+AGG | + | chr2_2:1383678-1383697 | Msa0229630:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | + | chr2_2:1383771-1383790 | Msa0229630:CDS | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | + | chr2_2:1383870-1383889 | Msa0229630:CDS | 40.0% |
| AAATTCGATTCCGCTTGTGA+TGG | - | chr2_2:1385058-1385077 | None:intergenic | 40.0% | |
| ACAAGCGGAATCGAATTTGT+TGG | + | chr2_2:1385060-1385079 | Msa0229630:intron | 40.0% | |
| ACGGTGAAAACAAGTTGTTC+AGG | + | chr2_2:1385188-1385207 | Msa0229630:intron | 40.0% | |
| AGAAATCTCACCAATCTCGA+CGG | + | chr2_2:1385454-1385473 | Msa0229630:intron | 40.0% | |
| TCGATTGAAGGAGTAGAAAC+CGG | + | chr2_2:1385497-1385516 | Msa0229630:intron | 40.0% | |
| TCTCATGATTGCATCCGATT+TGG | - | chr2_2:1385545-1385564 | None:intergenic | 40.0% | |
| ATGCAATCATGAGAAGCTGA+AGG | + | chr2_2:1385551-1385570 | Msa0229630:intron | 40.0% | |
| ATCTTCATCAATGTCGGAAG+CGG | + | chr2_2:1385616-1385635 | Msa0229630:intron | 40.0% | |
| CATCATCATCTTCATCCCTA+GGG | + | chr2_2:1385648-1385667 | Msa0229630:intron | 40.0% | |
| GAATCTTTATCATGTGCCGT+AGG | - | chr2_2:1385995-1386014 | None:intergenic | 40.0% | |
| ! | TTGGGGCATCCTTAACTTTA+AGG | - | chr2_2:1386458-1386477 | None:intergenic | 40.0% |
| TTAGGAAGCTAGTGAGCATT+GGG | - | chr2_2:1386476-1386495 | None:intergenic | 40.0% | |
| CTATTGATCAGTTGGTTGAC+AGG | - | chr2_2:1386703-1386722 | None:intergenic | 40.0% | |
| GTCAACCAACTGATCAATAG+AGG | + | chr2_2:1386703-1386722 | Msa0229630:intron | 40.0% | |
| GACAACCTCTATTGATCAGT+TGG | - | chr2_2:1386711-1386730 | None:intergenic | 40.0% | |
| GTTTGTGCACAATCAGTCAA+GGG | - | chr2_2:1386835-1386854 | None:intergenic | 40.0% | |
| AGTTTGTGCACAATCAGTCA+AGG | - | chr2_2:1386836-1386855 | None:intergenic | 40.0% | |
| TCTTTAGGTGGTTAGGGATT+TGG | - | chr2_2:1386861-1386880 | None:intergenic | 40.0% | |
| AGATGAAATACCACATCGGA+AGG | + | chr2_2:1386878-1386897 | Msa0229630:intron | 40.0% | |
| TGAAGTAACAAACTAGTGGG+TGG | + | chr2_2:1386908-1386927 | Msa0229630:intron | 40.0% | |
| AGGGAGTGGAAATCCTATAT+CGG | + | chr2_2:1387011-1387030 | Msa0229630:intron | 40.0% | |
| !! | CTTCTTAGAAGGTGTTGAGA+AGG | - | chr2_2:1387051-1387070 | None:intergenic | 40.0% |
| ! | CTTCTCAACACCTTCTAAGA+AGG | + | chr2_2:1387049-1387068 | Msa0229630:intron | 40.0% |
| ! | TCTCAACACCTTCTAAGAAG+GGG | + | chr2_2:1387051-1387070 | Msa0229630:intron | 40.0% |
| TATATTTGGGAGTGGTAGCT+AGG | - | chr2_2:1387188-1387207 | None:intergenic | 40.0% | |
| ! | GACTAGTGGGAAAGGTATAA+TGG | - | chr2_2:1387582-1387601 | None:intergenic | 40.0% |
| TATGGATGTGGAAGACTAGT+GGG | - | chr2_2:1387595-1387614 | None:intergenic | 40.0% | |
| ATATGGATGTGGAAGACTAG+TGG | - | chr2_2:1387596-1387615 | None:intergenic | 40.0% | |
| CTTCCACATCCATATGTTAG+AGG | + | chr2_2:1387601-1387620 | Msa0229630:intron | 40.0% | |
| ACTCAACAAGTGAGTGAGTA+CGG | + | chr2_2:1387750-1387769 | Msa0229630:intron | 40.0% | |
| TAACAGCACGACAAGGGTTA+AGG | - | chr2_2:1383238-1383257 | None:intergenic | 45.0% | |
| TCATGTTCAAGAAGGTGGTG+CGG | + | chr2_2:1383309-1383328 | Msa0229630:CDS | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | - | chr2_2:1383375-1383394 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | + | chr2_2:1383373-1383392 | Msa0229630:CDS | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | + | chr2_2:1383777-1383796 | Msa0229630:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | + | chr2_2:1383825-1383844 | Msa0229630:CDS | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | + | chr2_2:1383860-1383879 | Msa0229630:CDS | 45.0% | |
| ! | CTGTGCTTCATCAGCTTGTT+GGG | - | chr2_2:1384505-1384524 | None:intergenic | 45.0% |
| ! | CTTTGGTTCAGAAGCTGCTT+TGG | - | chr2_2:1384677-1384696 | None:intergenic | 45.0% |
| ! | TATGTCTCAGAAGCGGGTTT+GGG | - | chr2_2:1384701-1384720 | None:intergenic | 45.0% |
| ! | TTATGTCTCAGAAGCGGGTT+TGG | - | chr2_2:1384702-1384721 | None:intergenic | 45.0% |
| AGCTGCTTATGTCTCAGAAG+CGG | - | chr2_2:1384708-1384727 | None:intergenic | 45.0% | |
| ! | TCTGAGACATAAGCAGCTTC+TGG | + | chr2_2:1384710-1384729 | Msa0229630:intron | 45.0% |
| AGCTGCTTATGTCTCAGAAG+CGG | - | chr2_2:1384708-1384727 | None:intergenic | 45.0% | |
| GCAATCTGCAACGTATGCTA+TGG | + | chr2_2:1384847-1384866 | Msa0229630:intron | 45.0% | |
| ACACAAACCAAATCTTCCGC+CGG | + | chr2_2:1385109-1385128 | Msa0229630:intron | 45.0% | |
| !! | TCAATCGTCGTTTTCGATCC+CGG | - | chr2_2:1385131-1385150 | None:intergenic | 45.0% |
| AACGCGAAGCTGATTGTTGA+CGG | + | chr2_2:1385169-1385188 | Msa0229630:intron | 45.0% | |
| !! | AGATTGAGGAGCGCTGTTTA+CGG | - | chr2_2:1385263-1385282 | None:intergenic | 45.0% |
| GAGCAGCGATTCTTCAATTC+AGG | + | chr2_2:1385338-1385357 | Msa0229630:intron | 45.0% | |
| !! | GATGGATTTTCCGTCGAGAT+TGG | - | chr2_2:1385467-1385486 | None:intergenic | 45.0% |
| GGAGTAGAAACCGGAATGAT+AGG | + | chr2_2:1385506-1385525 | Msa0229630:intron | 45.0% | |
| GCTGAAGGTTCTTGAATTGC+AGG | + | chr2_2:1385566-1385585 | Msa0229630:intron | 45.0% | |
| GCATCATCATCTTCATCCCT+AGG | + | chr2_2:1385647-1385666 | Msa0229630:intron | 45.0% | |
| ! | TAGGAAGCTAGTGAGCATTG+GGG | - | chr2_2:1386475-1386494 | None:intergenic | 45.0% |
| CTTAGGAAGCTAGTGAGCAT+TGG | - | chr2_2:1386477-1386496 | None:intergenic | 45.0% | |
| AAAAAAGACACGCCGTAACG+AGG | + | chr2_2:1386524-1386543 | Msa0229630:intron | 45.0% | |
| ! | TGGCCTTTCTTTGGTTGGTT+GGG | - | chr2_2:1386569-1386588 | None:intergenic | 45.0% |
| ATGGCCTTTCTTTGGTTGGT+TGG | - | chr2_2:1386570-1386589 | None:intergenic | 45.0% | |
| TCTGAAAGTCTCGCAATGAG+CGG | - | chr2_2:1386748-1386767 | None:intergenic | 45.0% | |
| !! | TCACTTTTGTCCTTCCGATG+TGG | - | chr2_2:1386891-1386910 | None:intergenic | 45.0% |
| GTTGGATGCTTCTCCGATAT+AGG | - | chr2_2:1387027-1387046 | None:intergenic | 45.0% | |
| !! | AGAAGGTGTTGAGAAGGAGT+TGG | - | chr2_2:1387045-1387064 | None:intergenic | 45.0% |
| CTCTTCATCCCCTTCTTAGA+AGG | - | chr2_2:1387062-1387081 | None:intergenic | 45.0% | |
| ATGTGGAAGACTAGTGGGAA+AGG | - | chr2_2:1387590-1387609 | None:intergenic | 45.0% | |
| CTCCCTCTAACATATGGATG+TGG | - | chr2_2:1387607-1387626 | None:intergenic | 45.0% | |
| CTGACACTCCCTCTAACATA+TGG | - | chr2_2:1387613-1387632 | None:intergenic | 45.0% | |
| TGTTCTTGCAGATGGCTACT+GGG | + | chr2_2:1387839-1387858 | Msa0229630:intron | 45.0% | |
| TTACATATGAAAGCCGCGGA+AGG | - | chr2_2:1387876-1387895 | None:intergenic | 45.0% | |
| !! | CATTAAATTTAAAAATAAAA+GGG | - | chr2_2:1387444-1387463 | None:intergenic | 5.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | + | chr2_2:1383778-1383797 | Msa0229630:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | + | chr2_2:1383788-1383807 | Msa0229630:CDS | 50.0% |
| ! | GTGAGTGTTTGAGGCAAACC+TGG | - | chr2_2:1383981-1384000 | None:intergenic | 50.0% |
| AGCCTCCCTCAAACTCAAAG+TGG | + | chr2_2:1384355-1384374 | Msa0229630:intron | 50.0% | |
| ! | CTCCACTTTGAGTTTGAGGG+AGG | - | chr2_2:1384360-1384379 | None:intergenic | 50.0% |
| CCTGTGCTTCATCAGCTTGT+TGG | - | chr2_2:1384506-1384525 | None:intergenic | 50.0% | |
| CCAACAAGCTGATGAAGCAC+AGG | + | chr2_2:1384503-1384522 | Msa0229630:intron | 50.0% | |
| TTCCCTTGGATTCCTCATGC+GGG | - | chr2_2:1384529-1384548 | None:intergenic | 50.0% | |
| CTTCCCTTGGATTCCTCATG+CGG | - | chr2_2:1384530-1384549 | None:intergenic | 50.0% | |
| CATGAGGAATCCAAGGGAAG+TGG | + | chr2_2:1384530-1384549 | Msa0229630:intron | 50.0% | |
| AGCTACAACTCCACTTCCCT+TGG | - | chr2_2:1384543-1384562 | None:intergenic | 50.0% | |
| GCTGCTTATGTCTCAGAAGC+GGG | - | chr2_2:1384707-1384726 | None:intergenic | 50.0% | |
| ! | ATGTCTCAGAAGCGGGTTTG+CGG | - | chr2_2:1384700-1384719 | None:intergenic | 50.0% |
| GCTGCTTATGTCTCAGAAGC+GGG | - | chr2_2:1384707-1384726 | None:intergenic | 50.0% | |
| ! | AGGGAGGCATATGTGGATTC+CGG | - | chr2_2:1385021-1385040 | None:intergenic | 50.0% |
| GATGGATACCTTGGGATCGA+GGG | - | chr2_2:1385040-1385059 | None:intergenic | 50.0% | |
| ! | TGATGGATACCTTGGGATCG+AGG | - | chr2_2:1385041-1385060 | None:intergenic | 50.0% |
| !! | CCGCTTGTGATGGATACCTT+GGG | - | chr2_2:1385048-1385067 | None:intergenic | 50.0% |
| ! | CCCAAGGTATCCATCACAAG+CGG | + | chr2_2:1385045-1385064 | Msa0229630:intron | 50.0% |
| !! | TCCGCTTGTGATGGATACCT+TGG | - | chr2_2:1385049-1385068 | None:intergenic | 50.0% |
| CACAAACCAAATCTTCCGCC+GGG | + | chr2_2:1385110-1385129 | Msa0229630:intron | 50.0% | |
| ! | TTTTCCGACGAACAACCACG+AGG | + | chr2_2:1385214-1385233 | Msa0229630:intron | 50.0% |
| TTTGCCTCGTGGTTGTTCGT+CGG | - | chr2_2:1385221-1385240 | None:intergenic | 50.0% | |
| CTTCGTCATACACACTGCTC+CGG | - | chr2_2:1385288-1385307 | None:intergenic | 50.0% | |
| ATCAATGTCGGAAGCGGAAG+CGG | + | chr2_2:1385622-1385641 | Msa0229630:intron | 50.0% | |
| GGTATCAGAGCGATACCCTA+GGG | - | chr2_2:1385666-1385685 | None:intergenic | 50.0% | |
| TGGTATCAGAGCGATACCCT+AGG | - | chr2_2:1385667-1385686 | None:intergenic | 50.0% | |
| ! | TTCTTTGGTTGGTTGGGTGC+TGG | - | chr2_2:1386563-1386582 | None:intergenic | 50.0% |
| GCACCCAACCAACCAAAGAA+AGG | + | chr2_2:1386563-1386582 | Msa0229630:intron | 50.0% | |
| AGGGATGGCCTTTCTTTGGT+TGG | - | chr2_2:1386574-1386593 | None:intergenic | 50.0% | |
| ! | TCAGTCAAGGGTTGGCAACT+GGG | - | chr2_2:1386823-1386842 | None:intergenic | 50.0% |
| ! | ATCAGTCAAGGGTTGGCAAC+TGG | - | chr2_2:1386824-1386843 | None:intergenic | 50.0% |
| GTGCACAATCAGTCAAGGGT+TGG | - | chr2_2:1386831-1386850 | None:intergenic | 50.0% | |
| AATGCTAGCAGACATGCAGC+AGG | + | chr2_2:1387155-1387174 | Msa0229630:intron | 50.0% | |
| GTGTTCTTGCAGATGGCTAC+TGG | + | chr2_2:1387838-1387857 | Msa0229630:intron | 50.0% | |
| TATGAAAGCCGCGGAAGGTA+GGG | - | chr2_2:1387871-1387890 | None:intergenic | 50.0% | |
| ATATGAAAGCCGCGGAAGGT+AGG | - | chr2_2:1387872-1387891 | None:intergenic | 50.0% | |
| GGGCTTACATATGAAAGCCG+CGG | - | chr2_2:1387880-1387899 | None:intergenic | 50.0% | |
| ! | CAGAAGCGGGTTTGGGACTT+TGG | - | chr2_2:1384694-1384713 | None:intergenic | 55.0% |
| !! | CAGAAGCGGGTTTGCGGTTT+TGG | - | chr2_2:1384763-1384782 | None:intergenic | 55.0% |
| ATATGCCTCCCTCGATCCCA+AGG | + | chr2_2:1385029-1385048 | Msa0229630:intron | 55.0% | |
| TTCGATCCCGGCGGAAGATT+TGG | - | chr2_2:1385119-1385138 | None:intergenic | 55.0% | |
| !! | ATCGTCGTTTTCGATCCCGG+CGG | - | chr2_2:1385128-1385147 | None:intergenic | 55.0% |
| ! | CCTTGAGGCTTTTTGCCTCG+TGG | - | chr2_2:1385232-1385251 | None:intergenic | 55.0% |
| CCACGAGGCAAAAAGCCTCA+AGG | + | chr2_2:1385229-1385248 | Msa0229630:intron | 55.0% | |
| CGAGGCAAAAAGCCTCAAGG+CGG | + | chr2_2:1385232-1385251 | Msa0229630:intron | 55.0% | |
| !! | TTGAGGAGCGCTGTTTACGG+TGG | - | chr2_2:1385260-1385279 | None:intergenic | 55.0% |
| ACAGCGCTCCTCAATCTCAC+CGG | + | chr2_2:1385266-1385285 | Msa0229630:intron | 55.0% | |
| ACACTGCTCCGGTGAGATTG+AGG | - | chr2_2:1385277-1385296 | None:intergenic | 55.0% | |
| AAAGACACGCCGTAACGAGG+AGG | + | chr2_2:1386527-1386546 | Msa0229630:intron | 55.0% | |
| GTGCAGGGATGGCCTTTCTT+TGG | - | chr2_2:1386578-1386597 | None:intergenic | 55.0% | |
| AGCCGACATCGTTGGGTGAT+GGG | - | chr2_2:1386606-1386625 | None:intergenic | 55.0% | |
| GTGTTGGAGCCGACATCGTT+GGG | - | chr2_2:1386613-1386632 | None:intergenic | 55.0% | |
| TGTGTTGGAGCCGACATCGT+TGG | - | chr2_2:1386614-1386633 | None:intergenic | 55.0% | |
| CGCAATGAGCGGATCTTCTC+TGG | - | chr2_2:1386737-1386756 | None:intergenic | 55.0% | |
| ! | GGTTTTTCCCCTACCTTCCG+CGG | + | chr2_2:1387860-1387879 | Msa0229630:CDS | 55.0% |
| ATGAAAGCCGCGGAAGGTAG+GGG | - | chr2_2:1387870-1387889 | None:intergenic | 55.0% | |
| ATGAAGCACAGGCCCGCATG+AGG | + | chr2_2:1384514-1384533 | Msa0229630:intron | 60.0% | |
| AGGCCCGCATGAGGAATCCA+AGG | + | chr2_2:1384523-1384542 | Msa0229630:intron | 60.0% | |
| GGCCCGCATGAGGAATCCAA+GGG | + | chr2_2:1384524-1384543 | Msa0229630:intron | 60.0% | |
| ! | GGGATCGAGGGAGGCATATG+TGG | - | chr2_2:1385028-1385047 | None:intergenic | 60.0% |
| GGATACCTTGGGATCGAGGG+AGG | - | chr2_2:1385037-1385056 | None:intergenic | 60.0% | |
| ACACGCCGTAACGAGGAGGA+CGG | + | chr2_2:1386531-1386550 | Msa0229630:intron | 60.0% | |
| GTTGGCCGTCCTCCTCGTTA+CGG | - | chr2_2:1386539-1386558 | None:intergenic | 60.0% | |
| !! | GGTTGGTTGGGTGCTGGAGT+TGG | - | chr2_2:1386557-1386576 | None:intergenic | 60.0% |
| !! | CGACATCGTTGGGTGATGGG+GGG | - | chr2_2:1386603-1386622 | None:intergenic | 60.0% |
| ! | CCGACATCGTTGGGTGATGG+GGG | - | chr2_2:1386604-1386623 | None:intergenic | 60.0% |
| CCCCCATCACCCAACGATGT+CGG | + | chr2_2:1386601-1386620 | Msa0229630:intron | 60.0% | |
| GCCGACATCGTTGGGTGATG+GGG | - | chr2_2:1386605-1386624 | None:intergenic | 60.0% | |
| GAGCCGACATCGTTGGGTGA+TGG | - | chr2_2:1386607-1386626 | None:intergenic | 60.0% | |
| TTTACGGTGGCGCCGCCTTG+AGG | - | chr2_2:1385247-1385266 | None:intergenic | 65.0% | |
| GATGGGGGGTAGTGCAGGGA+TGG | - | chr2_2:1386589-1386608 | None:intergenic | 65.0% | |
| !! | GGGTGATGGGGGGTAGTGCA+GGG | - | chr2_2:1386593-1386612 | None:intergenic | 65.0% |
| !! | TGGGTGATGGGGGGTAGTGC+AGG | - | chr2_2:1386594-1386613 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1383228 | 1387938 | 1383228 | ID=Msa0229630;Name=Msa0229630 |
| chr2_2 | mRNA | 1383228 | 1387938 | 1383228 | ID=Msa0229630-mRNA-1;Parent=Msa0229630;Name=Msa0229630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|280 |
| chr2_2 | exon | 1383228 | 1383981 | 1383228 | ID=Msa0229630-mRNA-1:exon:465;Parent=Msa0229630-mRNA-1 |
| chr2_2 | exon | 1387850 | 1387938 | 1387850 | ID=Msa0229630-mRNA-1:exon:466;Parent=Msa0229630-mRNA-1 |
| chr2_2 | CDS | 1383228 | 1383981 | 1383228 | ID=Msa0229630-mRNA-1:cds;Parent=Msa0229630-mRNA-1 |
| chr2_2 | CDS | 1387850 | 1387938 | 1387850 | ID=Msa0229630-mRNA-1:cds;Parent=Msa0229630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
