Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199940 | XP_003594789.1 | 100.000 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 2.87e-140 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199940 | sp|O04834|SAR1A_ARATH | 96.373 | 193 | 7 | 0 | 1 | 193 | 1 | 193 | 2.23e-139 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199940 | G7IMU5 | 100.000 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 1.37e-140 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0199940 | 0.801270 | 9.748271e-49 | -8.615850e-47 |
| Msa0028930 | Msa0199940 | 0.811987 | 5.317665e-51 | -8.615850e-47 |
| Msa0064230 | Msa0199940 | 0.805837 | 1.100722e-49 | -8.615850e-47 |
| Msa0064280 | Msa0199940 | 0.801081 | 1.065182e-48 | -8.615850e-47 |
| Msa0077340 | Msa0199940 | 0.817782 | 2.757665e-52 | -8.615850e-47 |
| Msa0093850 | Msa0199940 | 0.824563 | 7.544151e-54 | -8.615850e-47 |
| Msa0106620 | Msa0199940 | 0.832517 | 9.034059e-56 | -8.615850e-47 |
| Msa0106710 | Msa0199940 | 0.818527 | 1.870811e-52 | -8.615850e-47 |
| Msa0124450 | Msa0199940 | 0.809291 | 2.035168e-50 | -8.615850e-47 |
| Msa0199940 | Msa0209140 | 0.810012 | 1.424458e-50 | -8.615850e-47 |
| Msa0199940 | Msa0214550 | 0.800078 | 1.706166e-48 | -8.615850e-47 |
| Msa0199940 | Msa0217700 | 0.805936 | 1.049162e-49 | -8.615850e-47 |
| Msa0199940 | Msa0223230 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa0199940 | Msa0225620 | 0.803153 | 3.993037e-49 | -8.615850e-47 |
| Msa0199940 | Msa0237210 | 0.809181 | 2.148271e-50 | -8.615850e-47 |
| Msa0199940 | Msa0240900 | 0.854047 | 1.596775e-61 | -8.615850e-47 |
| Msa0199940 | Msa0241830 | 0.831046 | 2.083515e-55 | -8.615850e-47 |
| Msa0199940 | Msa0244640 | 0.805728 | 1.160276e-49 | -8.615850e-47 |
| Msa0199940 | Msa0261170 | 0.811876 | 5.621647e-51 | -8.615850e-47 |
| Msa0199940 | Msa0263780 | 0.805366 | 1.381885e-49 | -8.615850e-47 |
| Msa0199940 | Msa0274980 | 0.828566 | 8.370149e-55 | -8.615850e-47 |
| Msa0199940 | Msa0278570 | 0.841616 | 4.266445e-58 | -8.615850e-47 |
| Msa0199940 | Msa0279850 | 0.832733 | 7.988307e-56 | -8.615850e-47 |
| Msa0199940 | Msa0281530 | 0.809433 | 1.897007e-50 | -8.615850e-47 |
| Msa0199940 | Msa0283330 | 0.800332 | 1.514559e-48 | -8.615850e-47 |
| Msa0199940 | Msa0288620 | 0.811437 | 7.003086e-51 | -8.615850e-47 |
| Msa0199940 | Msa0307270 | 0.804182 | 2.442153e-49 | -8.615850e-47 |
| Msa0199940 | Msa0315690 | 0.819071 | 1.407544e-52 | -8.615850e-47 |
| Msa0199940 | Msa0317970 | 0.850819 | 1.327239e-60 | -8.615850e-47 |
| Msa0199940 | Msa0319920 | 0.929076 | 1.166225e-92 | -8.615850e-47 |
| Msa0199940 | Msa0320590 | 0.804622 | 1.977767e-49 | -8.615850e-47 |
| Msa0199940 | Msa0321620 | 0.806959 | 6.383581e-50 | -8.615850e-47 |
| Msa0199940 | Msa0322900 | 0.840656 | 7.624625e-58 | -8.615850e-47 |
| Msa0199940 | Msa0339020 | 0.817948 | 2.530183e-52 | -8.615850e-47 |
| Msa0199940 | Msa0341690 | 0.835541 | 1.579983e-56 | -8.615850e-47 |
| Msa0199940 | Msa0382370 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0199940 | Msa0412790 | 0.808811 | 2.577794e-50 | -8.615850e-47 |
| Msa0199940 | Msa0432160 | 0.818549 | 1.850014e-52 | -8.615850e-47 |
| Msa0199940 | Msa0450400 | -0.826831 | 2.186032e-54 | -8.615850e-47 |
| Msa0199940 | Msa0476680 | 0.821228 | 4.514912e-53 | -8.615850e-47 |
| Msa0199940 | Msa0485240 | 0.818574 | 1.825840e-52 | -8.615850e-47 |
| Msa0199940 | Msa0521010 | 0.819639 | 1.044757e-52 | -8.615850e-47 |
| Msa0199940 | Msa0526730 | 0.801597 | 8.353712e-49 | -8.615850e-47 |
| Msa0199940 | Msa0583360 | -0.843890 | 1.060527e-58 | -8.615850e-47 |
| Msa0199940 | Msa0588090 | 0.803729 | 3.034030e-49 | -8.615850e-47 |
| Msa0199940 | Msa0613110 | 0.807299 | 5.408703e-50 | -8.615850e-47 |
| Msa0199940 | Msa0617170 | 0.806770 | 7.000269e-50 | -8.615850e-47 |
| Msa0199940 | Msa0626460 | 0.808644 | 2.798238e-50 | -8.615850e-47 |
| Msa0199940 | Msa0630770 | -0.805478 | 1.309263e-49 | -8.615850e-47 |
| Msa0199940 | Msa0655920 | 0.801956 | 7.048313e-49 | -8.615850e-47 |
| Msa0199940 | Msa0658040 | 0.809643 | 1.709624e-50 | -8.615850e-47 |
| Msa0199940 | Msa0664540 | 0.801803 | 7.578221e-49 | -8.615850e-47 |
| Msa0199940 | Msa0693330 | 0.863987 | 1.680454e-64 | -8.615850e-47 |
| Msa0199940 | Msa0702720 | 0.861499 | 9.830317e-64 | -8.615850e-47 |
| Msa0199940 | Msa0703800 | 0.808021 | 3.800702e-50 | -8.615850e-47 |
| Msa0199940 | Msa0733010 | 0.817370 | 3.416049e-52 | -8.615850e-47 |
| Msa0199940 | Msa0755330 | 0.801505 | 8.721993e-49 | -8.615850e-47 |
| Msa0199940 | Msa0823370 | 0.837165 | 6.105936e-57 | -8.615850e-47 |
| Msa0199940 | Msa0829300 | 0.806696 | 7.256494e-50 | -8.615850e-47 |
| Msa0199940 | Msa0829330 | 0.802078 | 6.655096e-49 | -8.615850e-47 |
| Msa0199940 | Msa0830660 | 0.850161 | 2.030483e-60 | -8.615850e-47 |
| Msa0199940 | Msa0833530 | 0.824238 | 8.995802e-54 | -8.615850e-47 |
| Msa0199940 | Msa0993190 | 0.830430 | 2.949935e-55 | -8.615850e-47 |
| Msa0199940 | Msa1034500 | 0.812449 | 4.215630e-51 | -8.615850e-47 |
| Msa0199940 | Msa1071050 | 0.823822 | 1.126306e-53 | -8.615850e-47 |
| Msa0199940 | Msa1083700 | 0.802074 | 6.667013e-49 | -8.615850e-47 |
| Msa0199940 | Msa1089450 | 0.849349 | 3.424049e-60 | -8.615850e-47 |
| Msa0199940 | Msa1118450 | 0.814424 | 1.551596e-51 | -8.615850e-47 |
| Msa0199940 | Msa1132480 | 0.800477 | 1.415191e-48 | -8.615850e-47 |
| Msa0199940 | Msa1135920 | 0.803837 | 2.881130e-49 | -8.615850e-47 |
| Msa0199940 | Msa1150960 | 0.836612 | 8.451646e-57 | -8.615850e-47 |
| Msa0199940 | Msa1155170 | -0.831014 | 2.122440e-55 | -8.615850e-47 |
| Msa0199940 | Msa1218450 | 0.811805 | 5.826149e-51 | -8.615850e-47 |
| Msa0199940 | Msa1219000 | 0.829929 | 3.910121e-55 | -8.615850e-47 |
| Msa0199940 | Msa1225860 | -0.841921 | 3.544664e-58 | -8.615850e-47 |
| Msa0199940 | Msa1226470 | 0.801371 | 9.294483e-49 | -8.615850e-47 |
| Msa0199940 | Msa1260220 | 0.806209 | 9.194291e-50 | -8.615850e-47 |
| Msa0199940 | Msa1307560 | 0.800913 | 1.153223e-48 | -8.615850e-47 |
| Msa0199940 | Msa1325410 | -0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0199940 | Msa1332760 | 0.824309 | 8.653372e-54 | -8.615850e-47 |
| Msa0199940 | Msa1341840 | 0.846026 | 2.811714e-59 | -8.615850e-47 |
| Msa0199940 | Msa1356600 | -0.810490 | 1.123505e-50 | -8.615850e-47 |
| Msa0199940 | Msa1369690 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0199940 | Msa1407750 | 0.809330 | 1.995667e-50 | -8.615850e-47 |
| Msa0199940 | Msa1412000 | 0.806049 | 9.935442e-50 | -8.615850e-47 |
| Msa0199940 | Msa1418240 | 0.812467 | 4.178395e-51 | -8.615850e-47 |
| Msa0199940 | Msa1440310 | 0.830501 | 2.834309e-55 | -8.615850e-47 |
| Msa0199940 | Msa1454500 | 0.805736 | 1.156118e-49 | -8.615850e-47 |
| Msa0199940 | Msa1461370 | 0.836054 | 1.171569e-56 | -8.615850e-47 |
| Msa0199940 | Msa1461540 | 0.807218 | 5.626679e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199940 | MtrunA17_Chr2g0294701 | 100.000 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 2.64e-144 | 399 |
| Msa0199940 | MtrunA17_Chr4g0068171 | 93.782 | 193 | 12 | 0 | 1 | 193 | 1 | 193 | 5.10e-138 | 383 |
| Msa0199940 | MtrunA17_Chr7g0271761 | 92.746 | 193 | 14 | 0 | 1 | 193 | 1 | 193 | 6.65e-137 | 380 |
| Msa0199940 | MtrunA17_Chr4g0072861 | 34.659 | 176 | 103 | 1 | 18 | 193 | 15 | 178 | 6.23e-29 | 106 |
| Msa0199940 | MtrunA17_Chr5g0401761 | 32.768 | 177 | 103 | 2 | 18 | 192 | 15 | 177 | 4.31e-26 | 99.0 |
| Msa0199940 | MtrunA17_Chr5g0395631 | 29.843 | 191 | 114 | 3 | 3 | 193 | 8 | 178 | 4.68e-25 | 96.3 |
| Msa0199940 | MtrunA17_Chr5g0413451 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.38e-25 | 95.5 |
| Msa0199940 | MtrunA17_Chr5g0413441 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.38e-25 | 95.5 |
| Msa0199940 | MtrunA17_Chr7g0270301 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.84e-25 | 95.5 |
| Msa0199940 | MtrunA17_Chr1g0194261 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.93e-25 | 95.5 |
| Msa0199940 | MtrunA17_Chr6g0450081 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 9.03e-25 | 95.5 |
| Msa0199940 | MtrunA17_Chr4g0039591 | 29.843 | 191 | 114 | 3 | 3 | 193 | 8 | 178 | 1.39e-24 | 95.1 |
| Msa0199940 | MtrunA17_Chr8g0373271 | 33.333 | 171 | 103 | 1 | 22 | 192 | 18 | 177 | 6.36e-24 | 93.2 |
| Msa0199940 | MtrunA17_Chr4g0012371 | 32.386 | 176 | 100 | 3 | 22 | 193 | 2 | 162 | 8.79e-24 | 92.4 |
| Msa0199940 | MtrunA17_Chr5g0395641 | 29.381 | 194 | 113 | 5 | 3 | 193 | 8 | 180 | 1.82e-23 | 92.0 |
| Msa0199940 | MtrunA17_Chr2g0287721 | 37.267 | 161 | 83 | 4 | 3 | 151 | 1 | 155 | 3.10e-23 | 92.0 |
| Msa0199940 | MtrunA17_Chr5g0401071 | 31.443 | 194 | 119 | 3 | 1 | 193 | 1 | 181 | 4.05e-23 | 91.3 |
| Msa0199940 | MtrunA17_Chr1g0188111 | 33.333 | 171 | 102 | 1 | 19 | 189 | 16 | 174 | 1.82e-22 | 89.4 |
| Msa0199940 | MtrunA17_Chr5g0434561 | 35.570 | 149 | 94 | 2 | 1 | 148 | 1 | 148 | 2.17e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199940 | AT4G02080.1 | 96.373 | 193 | 7 | 0 | 1 | 193 | 1 | 193 | 2.27e-140 | 389 |
| Msa0199940 | AT1G56330.1 | 95.833 | 192 | 8 | 0 | 1 | 192 | 1 | 192 | 9.06e-138 | 383 |
| Msa0199940 | AT3G62560.1 | 94.792 | 192 | 10 | 0 | 1 | 192 | 1 | 192 | 2.87e-137 | 381 |
| Msa0199940 | AT1G09180.1 | 91.192 | 193 | 17 | 0 | 1 | 193 | 1 | 193 | 2.80e-131 | 366 |
| Msa0199940 | AT1G02620.1 | 90.090 | 111 | 11 | 0 | 83 | 193 | 12 | 122 | 1.09e-71 | 213 |
| Msa0199940 | AT2G24765.1 | 35.227 | 176 | 102 | 1 | 18 | 193 | 15 | 178 | 1.23e-28 | 105 |
| Msa0199940 | AT3G49870.1 | 33.505 | 194 | 115 | 3 | 1 | 193 | 1 | 181 | 4.21e-27 | 101 |
| Msa0199940 | AT5G67560.1 | 32.990 | 194 | 116 | 3 | 1 | 193 | 1 | 181 | 4.25e-26 | 99.4 |
| Msa0199940 | AT3G49870.2 | 34.706 | 170 | 98 | 2 | 25 | 193 | 5 | 162 | 9.11e-26 | 97.8 |
| Msa0199940 | AT2G47170.2 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 5.90e-25 | 96.3 |
| Msa0199940 | AT2G47170.1 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 5.90e-25 | 96.3 |
| Msa0199940 | AT2G47170.3 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 5.90e-25 | 96.3 |
| Msa0199940 | AT3G62290.3 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 6.43e-25 | 96.3 |
| Msa0199940 | AT3G62290.1 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 6.43e-25 | 96.3 |
| Msa0199940 | AT3G62290.2 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 6.43e-25 | 96.3 |
| Msa0199940 | AT5G17060.2 | 30.366 | 191 | 113 | 3 | 3 | 193 | 8 | 178 | 8.21e-25 | 96.3 |
| Msa0199940 | AT5G17060.1 | 30.366 | 191 | 113 | 3 | 3 | 193 | 8 | 178 | 8.21e-25 | 96.3 |
| Msa0199940 | AT5G14670.2 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.16e-24 | 95.5 |
| Msa0199940 | AT5G14670.3 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.16e-24 | 95.5 |
| Msa0199940 | AT5G14670.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.30e-24 | 95.5 |
| Msa0199940 | AT1G10630.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.33e-24 | 95.1 |
| Msa0199940 | AT1G10630.2 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.33e-24 | 95.1 |
| Msa0199940 | AT1G23490.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT1G70490.2 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT1G70490.7 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT1G70490.4 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT1G70490.3 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT1G70490.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT1G70490.6 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT1G70490.5 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0199940 | AT2G18390.1 | 33.918 | 171 | 102 | 1 | 22 | 192 | 18 | 177 | 1.56e-24 | 95.1 |
| Msa0199940 | AT2G24765.2 | 41.593 | 113 | 66 | 0 | 18 | 130 | 15 | 127 | 2.08e-24 | 93.6 |
| Msa0199940 | AT3G03120.1 | 29.843 | 191 | 114 | 3 | 3 | 193 | 8 | 178 | 7.21e-24 | 93.6 |
| Msa0199940 | AT5G37680.1 | 35.948 | 153 | 96 | 2 | 1 | 152 | 1 | 152 | 2.95e-23 | 92.0 |
| Msa0199940 | AT3G49860.1 | 35.714 | 140 | 89 | 1 | 15 | 153 | 6 | 145 | 3.61e-23 | 91.3 |
| Msa0199940 | AT3G22950.1 | 32.759 | 174 | 105 | 2 | 19 | 192 | 16 | 177 | 9.59e-23 | 90.5 |
| Msa0199940 | AT3G22950.2 | 32.759 | 174 | 105 | 2 | 19 | 192 | 16 | 177 | 9.59e-23 | 90.5 |
| Msa0199940 | AT2G15310.1 | 30.508 | 177 | 111 | 1 | 16 | 192 | 13 | 177 | 1.59e-22 | 90.5 |
| Msa0199940 | AT3G03120.2 | 31.298 | 131 | 82 | 1 | 3 | 133 | 8 | 130 | 1.17e-20 | 84.0 |
| Msa0199940 | AT5G52210.1 | 36.913 | 149 | 76 | 3 | 15 | 148 | 7 | 152 | 2.87e-20 | 84.7 |
| Msa0199940 | AT5G52210.2 | 36.913 | 149 | 76 | 3 | 15 | 148 | 7 | 152 | 2.87e-20 | 84.7 |
| Msa0199940 | AT5G37680.2 | 39.806 | 103 | 62 | 0 | 50 | 152 | 3 | 105 | 1.36e-18 | 78.6 |
| Msa0199940 | AT1G02430.2 | 31.206 | 141 | 89 | 4 | 18 | 151 | 15 | 154 | 7.44e-15 | 69.3 |
| Msa0199940 | AT1G02430.1 | 31.206 | 141 | 89 | 4 | 18 | 151 | 15 | 154 | 1.42e-14 | 69.3 |
| Msa0199940 | AT1G02440.1 | 27.857 | 140 | 95 | 3 | 18 | 151 | 15 | 154 | 2.08e-13 | 65.9 |
Find 60 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTGCCTGTGGTGAAAT+TGG | 0.182813 | 2_1:-19365247 | None:intergenic |
| AAAATACTTGATTCTGTTGT+AGG | 0.228261 | 2_1:+19365553 | Msa0199940:three_prime_UTR |
| TTCATCTTCGATTGGTTCTA+TGG | 0.267772 | 2_1:+19362895 | Msa0199940:CDS |
| CTCTGTCTGTTGTGTTGTCT+TGG | 0.283623 | 2_1:-19362727 | None:intergenic |
| ACAAAACCAACCCATTCTTT+TGG | 0.292095 | 2_1:+19362840 | Msa0199940:five_prime_UTR |
| ATCAAATTGCTCGTAGAGTT+TGG | 0.294302 | 2_1:+19363199 | Msa0199940:CDS |
| AATGTTCCATTTCTTATTCT+AGG | 0.294978 | 2_1:+19365162 | Msa0199940:CDS |
| CTTCGGAGGAATTGAGTATT+GGG | 0.328437 | 2_1:+19363142 | Msa0199940:CDS |
| TTCTTGCATCCCTTGGTCTC+TGG | 0.356031 | 2_1:+19362920 | Msa0199940:CDS |
| TATGGCATTCTTGCATCCCT+TGG | 0.385266 | 2_1:+19362913 | Msa0199940:CDS |
| TCGTCTTCTGAAGCTGCATA+TGG | 0.388503 | 2_1:-19365201 | None:intergenic |
| AATTACAAGTTATTTACCTT+TGG | 0.388603 | 2_1:+19365427 | Msa0199940:three_prime_UTR |
| GTAGAGTCCAATCTGTTTGC+TGG | 0.399444 | 2_1:+19365380 | Msa0199940:exon |
| CAACCATGTTCATCTTCGAT+TGG | 0.422638 | 2_1:+19362887 | Msa0199940:exon |
| GAAGCCAAGATTCTCTTCCT+TGG | 0.425299 | 2_1:+19362949 | Msa0199940:CDS |
| GAGATCTAAACCCAAAAGAA+TGG | 0.455176 | 2_1:-19362851 | None:intergenic |
| TTCCTTGGTCTTGATAATGC+TGG | 0.455864 | 2_1:+19362964 | Msa0199940:CDS |
| TTGTTTCCTAGAATAAGAAA+TGG | 0.457150 | 2_1:-19365168 | None:intergenic |
| ACTTCGGAGGAATTGAGTAT+TGG | 0.465946 | 2_1:+19363141 | Msa0199940:CDS |
| CATCTTTGAGCATATGAAGA+AGG | 0.466211 | 2_1:-19362996 | None:intergenic |
| ATTGTCCGCAAGATGGGATA+TGG | 0.471519 | 2_1:+19365324 | Msa0199940:CDS |
| TTCCTCCGAAGTAGGATGTT+GGG | 0.479835 | 2_1:-19363130 | None:intergenic |
| TGCAGCATTGTCCGCAAGAT+GGG | 0.482538 | 2_1:+19365318 | Msa0199940:CDS |
| TTGGAAAGATTATTATGCTA+AGG | 0.487117 | 2_1:+19363218 | Msa0199940:CDS |
| AAGACCAAGGAAGAGAATCT+TGG | 0.490940 | 2_1:-19362953 | None:intergenic |
| ATCTCTCTTTCTCTCTCTGT+AGG | 0.497228 | 2_1:+19362765 | Msa0199940:five_prime_UTR |
| TGCCTCCATTAATATCTAAG+AGG | 0.501614 | 2_1:-19365633 | None:intergenic |
| AATCTGTTTGCTGGTCAACT+AGG | 0.503343 | 2_1:+19365389 | Msa0199940:three_prime_UTR |
| AGATCTAAACCCAAAAGAAT+GGG | 0.503502 | 2_1:-19362850 | None:intergenic |
| TGATATATTGTGAAAGCCAC+TGG | 0.515926 | 2_1:-19365356 | None:intergenic |
| ACCAATTTCACCACAGGCAA+AGG | 0.519780 | 2_1:+19365246 | Msa0199940:CDS |
| CGTCTTCTGAAGCTGCATAT+GGG | 0.521363 | 2_1:-19365200 | None:intergenic |
| GTGCAGCATTGTCCGCAAGA+TGG | 0.523551 | 2_1:+19365317 | Msa0199940:CDS |
| TGCCTGTGGTGAAATTGGTT+AGG | 0.535024 | 2_1:-19365242 | None:intergenic |
| GAGGTTTGCAGAATCTAAGA+AGG | 0.538939 | 2_1:+19365104 | Msa0199940:CDS |
| ATACTCAATTCCTCCGAAGT+AGG | 0.542870 | 2_1:-19363138 | None:intergenic |
| ATTCCTCCGAAGTAGGATGT+TGG | 0.553310 | 2_1:-19363131 | None:intergenic |
| ATTGACCTTGCCTTTGCCTG+TGG | 0.559718 | 2_1:-19365256 | None:intergenic |
| CGCAAGATGGGATATGGCGA+AGG | 0.565211 | 2_1:+19365330 | Msa0199940:CDS |
| TACTTGATTCTGTTGTAGGA+TGG | 0.566088 | 2_1:+19365557 | Msa0199940:three_prime_UTR |
| CTAAACCCAAAAGAATGGGT+TGG | 0.570954 | 2_1:-19362846 | None:intergenic |
| TAGTTGACCAGCAAACAGAT+TGG | 0.573453 | 2_1:-19365387 | None:intergenic |
| TGTTGTAGGATGGCATGACT+TGG | 0.574774 | 2_1:+19365567 | Msa0199940:three_prime_UTR |
| TCTTCATATGCTCAAAGATG+AGG | 0.580955 | 2_1:+19362999 | Msa0199940:CDS |
| ATCTTTGAGCATATGAAGAA+GGG | 0.582029 | 2_1:-19362995 | None:intergenic |
| CTTTGTCGTAAGCATCGACT+AGG | 0.589660 | 2_1:-19365080 | None:intergenic |
| GGCCTAACCAATTTCACCAC+AGG | 0.595827 | 2_1:+19365240 | Msa0199940:CDS |
| CTGCACATGAACACTTCAAG+AGG | 0.596703 | 2_1:-19365300 | None:intergenic |
| TCGATGCTTACGACAAAGAG+AGG | 0.612300 | 2_1:+19365085 | Msa0199940:CDS |
| ACCGACCCAACATCCTACTT+CGG | 0.614242 | 2_1:+19363125 | Msa0199940:CDS |
| TTCCAGCATTATCAAGACCA+AGG | 0.615002 | 2_1:-19362966 | None:intergenic |
| GACGAGCTACGATATCATCT+CGG | 0.618823 | 2_1:+19365219 | Msa0199940:CDS |
| TCCGAAGTAGGATGTTGGGT+CGG | 0.619899 | 2_1:-19363126 | None:intergenic |
| CCAATCAAAAGCAAAACCAA+AGG | 0.637449 | 2_1:-19365443 | None:intergenic |
| CACTTCAAGAGGTCGAACGT+TGG | 0.639582 | 2_1:-19365289 | None:intergenic |
| TTTCACCACAGGCAAAGGCA+AGG | 0.642687 | 2_1:+19365251 | Msa0199940:CDS |
| CTTCGCCATATCCCATCTTG+CGG | 0.645914 | 2_1:-19365329 | None:intergenic |
| GAACCAATCGAAGATGAACA+TGG | 0.652038 | 2_1:-19362890 | None:intergenic |
| GACCCAACATCCTACTTCGG+AGG | 0.659761 | 2_1:+19363128 | Msa0199940:CDS |
| GATATGGCGAAGGCTTCCAG+TGG | 0.701402 | 2_1:+19365340 | Msa0199940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTGATTATCATTTTT+TGG | + | chr2_1:19363257-19363276 | Msa0199940:intron | 15.0% |
| !!! | TCATTTTTTGGTTTTTATTT+AGG | + | chr2_1:19363269-19363288 | Msa0199940:intron | 15.0% |
| !!! | CATTTTTTGGTTTTTATTTA+GGG | + | chr2_1:19363270-19363289 | Msa0199940:intron | 15.0% |
| !! | ATAAATATAATGATCTATCT+AGG | + | chr2_1:19363677-19363696 | Msa0199940:intron | 15.0% |
| !! | ATAGATTATATCTGTATAAA+AGG | + | chr2_1:19364480-19364499 | Msa0199940:intron | 15.0% |
| !!! | AAACTTCAAATTTTTGTTAT+TGG | - | chr2_1:19364866-19364885 | None:intergenic | 15.0% |
| !!! | ACAAAAATTTGAAGTTTTTT+TGG | + | chr2_1:19364869-19364888 | Msa0199940:intron | 15.0% |
| !!! | ATGTTTAGAGATTATTTTTT+TGG | + | chr2_1:19365513-19365532 | Msa0199940:three_prime_UTR | 15.0% |
| !!! | TGTTTAGAGATTATTTTTTT+GGG | + | chr2_1:19365514-19365533 | Msa0199940:three_prime_UTR | 15.0% |
| !!! | AATCGAATTTTGAATCAAAA+GGG | - | chr2_1:19363048-19363067 | None:intergenic | 20.0% |
| !!! | AAATCGAATTTTGAATCAAA+AGG | - | chr2_1:19363049-19363068 | None:intergenic | 20.0% |
| !!! | AAGTTTAAAGCTTTTGATTT+GGG | + | chr2_1:19363171-19363190 | Msa0199940:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | chr2_1:19363518-19363537 | Msa0199940:intron | 20.0% |
| !! | AACTATATTTCTTACAAAAG+TGG | - | chr2_1:19363868-19363887 | None:intergenic | 20.0% |
| !! | TTTGTATTTATCTGATTCAT+GGG | + | chr2_1:19364305-19364324 | Msa0199940:intron | 20.0% |
| !!! | GCTATTTTTATAAACTATCT+TGG | - | chr2_1:19364697-19364716 | None:intergenic | 20.0% |
| !! | AATTACAAGTTATTTACCTT+TGG | + | chr2_1:19365427-19365446 | Msa0199940:three_prime_UTR | 20.0% |
| !!! | AACAGAATCAAGTATTTTAA+AGG | - | chr2_1:19365551-19365570 | None:intergenic | 20.0% |
| !!! | CAAGTTTAAAGCTTTTGATT+TGG | + | chr2_1:19363170-19363189 | Msa0199940:CDS | 25.0% |
| ! | TTGGAAAGATTATTATGCTA+AGG | + | chr2_1:19363218-19363237 | Msa0199940:CDS | 25.0% |
| !!! | GTTTTTATTTAGGGATTAGT+TGG | + | chr2_1:19363279-19363298 | Msa0199940:intron | 25.0% |
| ! | TTCAGTGTAATTATAAGTGT+CGG | - | chr2_1:19363493-19363512 | None:intergenic | 25.0% |
| ! | ATAAAAATGTTACAAAGACC+AGG | - | chr2_1:19363620-19363639 | None:intergenic | 25.0% |
| !! | ACACTTTCATTTTCATGAAT+TGG | + | chr2_1:19363744-19363763 | Msa0199940:intron | 25.0% |
| ! | TTTCTTACAAAAGTGGTATT+TGG | - | chr2_1:19363861-19363880 | None:intergenic | 25.0% |
| ! | GAGAAGATGAATTATTTGAA+TGG | - | chr2_1:19364013-19364032 | None:intergenic | 25.0% |
| !! | TTTTAATGACTCATTCTTCT+TGG | + | chr2_1:19364213-19364232 | Msa0199940:intron | 25.0% |
| !! | AAATACAAAGAGCTTTATCT+GGG | - | chr2_1:19364294-19364313 | None:intergenic | 25.0% |
| !! | TAAATACAAAGAGCTTTATC+TGG | - | chr2_1:19364295-19364314 | None:intergenic | 25.0% |
| ! | CTTTGTATTTATCTGATTCA+TGG | + | chr2_1:19364304-19364323 | Msa0199940:intron | 25.0% |
| ! | TTCTCTCAAATTCTTGTTAA+AGG | - | chr2_1:19364422-19364441 | None:intergenic | 25.0% |
| !! | CTCTAGAAGTTATAGTATAT+TGG | - | chr2_1:19364998-19365017 | None:intergenic | 25.0% |
| ! | AATGTTCCATTTCTTATTCT+AGG | + | chr2_1:19365162-19365181 | Msa0199940:CDS | 25.0% |
| ! | TTGTTTCCTAGAATAAGAAA+TGG | - | chr2_1:19365171-19365190 | None:intergenic | 25.0% |
| !!! | TTAGAGATTATTTTTTTGGG+TGG | + | chr2_1:19365517-19365536 | Msa0199940:three_prime_UTR | 25.0% |
| ! | AAAATACTTGATTCTGTTGT+AGG | + | chr2_1:19365553-19365572 | Msa0199940:three_prime_UTR | 25.0% |
| ! | GTTTTGTGAATCTGTGAAAT+GGG | - | chr2_1:19362816-19362835 | None:intergenic | 30.0% |
| AGATCTAAACCCAAAAGAAT+GGG | - | chr2_1:19362853-19362872 | None:intergenic | 30.0% | |
| ATCTTTGAGCATATGAAGAA+GGG | - | chr2_1:19362998-19363017 | None:intergenic | 30.0% | |
| TCAAAAGGGTCAAAGAAAAA+AGG | - | chr2_1:19363034-19363053 | None:intergenic | 30.0% | |
| !!! | TTTAAAGCTTTTGATTTGGG+TGG | + | chr2_1:19363174-19363193 | Msa0199940:CDS | 30.0% |
| ATTTGTGAAAGTCTGTTGAA+AGG | + | chr2_1:19363322-19363341 | Msa0199940:intron | 30.0% | |
| ! | AATTTGTTTCAGCTATTGCA+TGG | + | chr2_1:19363352-19363371 | Msa0199940:intron | 30.0% |
| ACTAATTAACTAGCTAGCAT+GGG | - | chr2_1:19363912-19363931 | None:intergenic | 30.0% | |
| AACTAATTAACTAGCTAGCA+TGG | - | chr2_1:19363913-19363932 | None:intergenic | 30.0% | |
| ACACGTTCAATATATAGTGT+GGG | - | chr2_1:19363951-19363970 | None:intergenic | 30.0% | |
| TCAAATGTACTAATACGTGT+CGG | - | chr2_1:19363983-19364002 | None:intergenic | 30.0% | |
| TCATCTTCTCACATTATTAC+CGG | + | chr2_1:19364023-19364042 | Msa0199940:intron | 30.0% | |
| CATACCCTTGAATTGATATA+TGG | + | chr2_1:19364552-19364571 | Msa0199940:intron | 30.0% | |
| TTATGTTAGCTCAAACATGT+CGG | - | chr2_1:19364589-19364608 | None:intergenic | 30.0% | |
| ATTAAGCCGTTTATCTTAAC+AGG | + | chr2_1:19364806-19364825 | Msa0199940:intron | 30.0% | |
| TTAAGCCGTTTATCTTAACA+GGG | + | chr2_1:19364807-19364826 | Msa0199940:intron | 30.0% | |
| TGTCTAAAGGTGAAAGAATA+TGG | - | chr2_1:19364833-19364852 | None:intergenic | 30.0% | |
| ! | TGGAAATCTCTTTTGTCTAA+AGG | - | chr2_1:19364846-19364865 | None:intergenic | 30.0% |
| !! | ACTATAACTTCTAGAGTTGT+TGG | + | chr2_1:19365002-19365021 | Msa0199940:intron | 30.0% |
| !! | GGTTTTGTGAATCTGTGAAA+TGG | - | chr2_1:19362817-19362836 | None:intergenic | 35.0% |
| ! | ACAAAACCAACCCATTCTTT+TGG | + | chr2_1:19362840-19362859 | Msa0199940:five_prime_UTR | 35.0% |
| ! | CAAAACCAACCCATTCTTTT+GGG | + | chr2_1:19362841-19362860 | Msa0199940:five_prime_UTR | 35.0% |
| GAGATCTAAACCCAAAAGAA+TGG | - | chr2_1:19362854-19362873 | None:intergenic | 35.0% | |
| !! | TTCATCTTCGATTGGTTCTA+TGG | + | chr2_1:19362895-19362914 | Msa0199940:CDS | 35.0% |
| CATCTTTGAGCATATGAAGA+AGG | - | chr2_1:19362999-19363018 | None:intergenic | 35.0% | |
| TCTTCATATGCTCAAAGATG+AGG | + | chr2_1:19362999-19363018 | Msa0199940:CDS | 35.0% | |
| ATCAAATTGCTCGTAGAGTT+TGG | + | chr2_1:19363199-19363218 | Msa0199940:CDS | 35.0% | |
| TGAAAGTCTGTTGAAAGGTT+TGG | + | chr2_1:19363327-19363346 | Msa0199940:intron | 35.0% | |
| !! | GTAATTATAAGTGTCGGTGT+CGG | - | chr2_1:19363487-19363506 | None:intergenic | 35.0% |
| AAATCAGCACCTATGAAACA+CGG | - | chr2_1:19363566-19363585 | None:intergenic | 35.0% | |
| !!! | CTGATTTGTTTTCAGTTGGA+TGG | + | chr2_1:19363579-19363598 | Msa0199940:intron | 35.0% |
| GTAACTACATGTGTAAGTGT+CGG | - | chr2_1:19363715-19363734 | None:intergenic | 35.0% | |
| CACACGTTCAATATATAGTG+TGG | - | chr2_1:19363952-19363971 | None:intergenic | 35.0% | |
| CTATATATTGAACGTGTGTC+CGG | + | chr2_1:19363954-19363973 | Msa0199940:intron | 35.0% | |
| !! | AGGTGTTACTTCTTGTTGTA+TGG | + | chr2_1:19364093-19364112 | Msa0199940:intron | 35.0% |
| !! | GGTGTTACTTCTTGTTGTAT+GGG | + | chr2_1:19364094-19364113 | Msa0199940:intron | 35.0% |
| !! | GTGTTACTTCTTGTTGTATG+GGG | + | chr2_1:19364095-19364114 | Msa0199940:intron | 35.0% |
| ! | AGCTTTATCTGGGATTATGA+AGG | - | chr2_1:19364284-19364303 | None:intergenic | 35.0% |
| GTATTTATCTGATTCATGGG+AGG | + | chr2_1:19364308-19364327 | Msa0199940:intron | 35.0% | |
| !!! | ACCTCCTGAAAGTTTTAAAG+GGG | - | chr2_1:19364365-19364384 | None:intergenic | 35.0% |
| !!! | CACCTCCTGAAAGTTTTAAA+GGG | - | chr2_1:19364366-19364385 | None:intergenic | 35.0% |
| !! | ACACCTCCTGAAAGTTTTAA+AGG | - | chr2_1:19364367-19364386 | None:intergenic | 35.0% |
| AAAGGAAAACAGTACATGTG+TGG | - | chr2_1:19364404-19364423 | None:intergenic | 35.0% | |
| TGAGAGAAAGAACATACAGA+AGG | + | chr2_1:19364434-19364453 | Msa0199940:intron | 35.0% | |
| GAGAGAAAGAACATACAGAA+GGG | + | chr2_1:19364435-19364454 | Msa0199940:intron | 35.0% | |
| CAGGCCATATATCAATTCAA+GGG | - | chr2_1:19364559-19364578 | None:intergenic | 35.0% | |
| ACAGGCCATATATCAATTCA+AGG | - | chr2_1:19364560-19364579 | None:intergenic | 35.0% | |
| AAACTATCTTGGAGAGCTTA+TGG | - | chr2_1:19364686-19364705 | None:intergenic | 35.0% | |
| TATGGCCCTGTTAAGATAAA+CGG | - | chr2_1:19364815-19364834 | None:intergenic | 35.0% | |
| AGTCAAACATAGAGCTGAAT+TGG | - | chr2_1:19364936-19364955 | None:intergenic | 35.0% | |
| !! | ACTTCTAGAGTTGTTGGATA+TGG | + | chr2_1:19365008-19365027 | Msa0199940:intron | 35.0% |
| ! | TTTAGAATTCTCACCTATGC+TGG | + | chr2_1:19365032-19365051 | Msa0199940:intron | 35.0% |
| TGATATATTGTGAAAGCCAC+TGG | - | chr2_1:19365359-19365378 | None:intergenic | 35.0% | |
| CCAATCAAAAGCAAAACCAA+AGG | - | chr2_1:19365446-19365465 | None:intergenic | 35.0% | |
| !!! | CCTTTGGTTTTGCTTTTGAT+TGG | + | chr2_1:19365443-19365462 | Msa0199940:three_prime_UTR | 35.0% |
| TACTTGATTCTGTTGTAGGA+TGG | + | chr2_1:19365557-19365576 | Msa0199940:three_prime_UTR | 35.0% | |
| ATCTCTCTTTCTCTCTCTGT+AGG | + | chr2_1:19362765-19362784 | Msa0199940:five_prime_UTR | 40.0% | |
| !!! | AGAATGGGTTGGTTTTGTGT+TGG | - | chr2_1:19362838-19362857 | None:intergenic | 40.0% |
| CTAAACCCAAAAGAATGGGT+TGG | - | chr2_1:19362849-19362868 | None:intergenic | 40.0% | |
| CAACCATGTTCATCTTCGAT+TGG | + | chr2_1:19362887-19362906 | Msa0199940:exon | 40.0% | |
| GAACCAATCGAAGATGAACA+TGG | - | chr2_1:19362893-19362912 | None:intergenic | 40.0% | |
| ! | TTCTTTTTGCCAGAGACCAA+GGG | - | chr2_1:19362932-19362951 | None:intergenic | 40.0% |
| AAGACCAAGGAAGAGAATCT+TGG | - | chr2_1:19362956-19362975 | None:intergenic | 40.0% | |
| !! | TTCCTTGGTCTTGATAATGC+TGG | + | chr2_1:19362964-19362983 | Msa0199940:CDS | 40.0% |
| TTCCAGCATTATCAAGACCA+AGG | - | chr2_1:19362969-19362988 | None:intergenic | 40.0% | |
| ATACTCAATTCCTCCGAAGT+AGG | - | chr2_1:19363141-19363160 | None:intergenic | 40.0% | |
| ACTTCGGAGGAATTGAGTAT+TGG | + | chr2_1:19363141-19363160 | Msa0199940:CDS | 40.0% | |
| CTTCGGAGGAATTGAGTATT+GGG | + | chr2_1:19363142-19363161 | Msa0199940:CDS | 40.0% | |
| TTATTAGTGGTGTCTGTGTC+CGG | + | chr2_1:19363531-19363550 | Msa0199940:intron | 40.0% | |
| TGTCTGTATCCGTGTTTCAT+AGG | + | chr2_1:19363554-19363573 | Msa0199940:intron | 40.0% | |
| !!! | GGTGCTGATTTGTTTTCAGT+TGG | + | chr2_1:19363575-19363594 | Msa0199940:intron | 40.0% |
| ! | CAGTGTTGTGTCTGTGATTT+TGG | + | chr2_1:19363778-19363797 | Msa0199940:intron | 40.0% |
| GGTCTATGTAAGTGCTTCAT+AGG | + | chr2_1:19364073-19364092 | Msa0199940:intron | 40.0% | |
| !! | AGCACCCCTTTAAAACTTTC+AGG | + | chr2_1:19364358-19364377 | Msa0199940:intron | 40.0% |
| !! | ACCCCTTTAAAACTTTCAGG+AGG | + | chr2_1:19364361-19364380 | Msa0199940:intron | 40.0% |
| GAAAACAGTACATGTGTGGA+AGG | - | chr2_1:19364400-19364419 | None:intergenic | 40.0% | |
| AGAAAGAACATACAGAAGGG+TGG | + | chr2_1:19364438-19364457 | Msa0199940:intron | 40.0% | |
| GAAAGAACATACAGAAGGGT+GGG | + | chr2_1:19364439-19364458 | Msa0199940:intron | 40.0% | |
| CAAACATGTCGGATCAAAAC+AGG | - | chr2_1:19364578-19364597 | None:intergenic | 40.0% | |
| AGCTGAATTGGTGAATGGAA+AGG | - | chr2_1:19364924-19364943 | None:intergenic | 40.0% | |
| CATAGAGCTGAATTGGTGAA+TGG | - | chr2_1:19364929-19364948 | None:intergenic | 40.0% | |
| GAGGTTTGCAGAATCTAAGA+AGG | + | chr2_1:19365104-19365123 | Msa0199940:CDS | 40.0% | |
| TAGTTGACCAGCAAACAGAT+TGG | - | chr2_1:19365390-19365409 | None:intergenic | 40.0% | |
| ! | AATCTGTTTGCTGGTCAACT+AGG | + | chr2_1:19365389-19365408 | Msa0199940:three_prime_UTR | 40.0% |
| CTCTGTCTGTTGTGTTGTCT+TGG | - | chr2_1:19362730-19362749 | None:intergenic | 45.0% | |
| TATGGCATTCTTGCATCCCT+TGG | + | chr2_1:19362913-19362932 | Msa0199940:CDS | 45.0% | |
| ! | CTTCTTTTTGCCAGAGACCA+AGG | - | chr2_1:19362933-19362952 | None:intergenic | 45.0% |
| GAAGCCAAGATTCTCTTCCT+TGG | + | chr2_1:19362949-19362968 | Msa0199940:CDS | 45.0% | |
| TTCCTCCGAAGTAGGATGTT+GGG | - | chr2_1:19363133-19363152 | None:intergenic | 45.0% | |
| ATTCCTCCGAAGTAGGATGT+TGG | - | chr2_1:19363134-19363153 | None:intergenic | 45.0% | |
| TGAAACACGGATACAGACAC+CGG | - | chr2_1:19363553-19363572 | None:intergenic | 45.0% | |
| AGTTGGATGGATCTGTTGAC+AGG | + | chr2_1:19363592-19363611 | Msa0199940:intron | 45.0% | |
| TACTAATACGTGTCGGACAC+CGG | - | chr2_1:19363976-19363995 | None:intergenic | 45.0% | |
| ! | CAACGCTTGAGTGTTGTGTT+TGG | + | chr2_1:19364052-19364071 | Msa0199940:intron | 45.0% |
| !!! | GGGTGCTGGATTTTCATATG+TGG | + | chr2_1:19364115-19364134 | Msa0199940:intron | 45.0% |
| CATGGGAGGCAAAAAGTTAC+TGG | + | chr2_1:19364322-19364341 | Msa0199940:intron | 45.0% | |
| AGACTGTTTGTGAGAGCTTG+TGG | + | chr2_1:19364618-19364637 | Msa0199940:intron | 45.0% | |
| !! | CTTTGTCGTAAGCATCGACT+AGG | - | chr2_1:19365083-19365102 | None:intergenic | 45.0% |
| TCGATGCTTACGACAAAGAG+AGG | + | chr2_1:19365085-19365104 | Msa0199940:CDS | 45.0% | |
| !! | CGTCTTCTGAAGCTGCATAT+GGG | - | chr2_1:19365203-19365222 | None:intergenic | 45.0% |
| !! | TCGTCTTCTGAAGCTGCATA+TGG | - | chr2_1:19365204-19365223 | None:intergenic | 45.0% |
| GACGAGCTACGATATCATCT+CGG | + | chr2_1:19365219-19365238 | Msa0199940:CDS | 45.0% | |
| TGCCTGTGGTGAAATTGGTT+AGG | - | chr2_1:19365245-19365264 | None:intergenic | 45.0% | |
| ACCAATTTCACCACAGGCAA+AGG | + | chr2_1:19365246-19365265 | Msa0199940:CDS | 45.0% | |
| CTGCACATGAACACTTCAAG+AGG | - | chr2_1:19365303-19365322 | None:intergenic | 45.0% | |
| ATTGTCCGCAAGATGGGATA+TGG | + | chr2_1:19365324-19365343 | Msa0199940:CDS | 45.0% | |
| GTAGAGTCCAATCTGTTTGC+TGG | + | chr2_1:19365380-19365399 | Msa0199940:exon | 45.0% | |
| TGTTGTAGGATGGCATGACT+TGG | + | chr2_1:19365567-19365586 | Msa0199940:three_prime_UTR | 45.0% | |
| TTCTTGCATCCCTTGGTCTC+TGG | + | chr2_1:19362920-19362939 | Msa0199940:CDS | 50.0% | |
| ACCGACCCAACATCCTACTT+CGG | + | chr2_1:19363125-19363144 | Msa0199940:CDS | 50.0% | |
| TCCGAAGTAGGATGTTGGGT+CGG | - | chr2_1:19363129-19363148 | None:intergenic | 50.0% | |
| ACACATCCACACATCCGACA+CGG | - | chr2_1:19363464-19363483 | None:intergenic | 50.0% | |
| TGGATCTGTTGACAGGTTCC+TGG | + | chr2_1:19363599-19363618 | Msa0199940:intron | 50.0% | |
| ! | CTTCTTGTTGTATGGGGTGC+TGG | + | chr2_1:19364101-19364120 | Msa0199940:intron | 50.0% |
| ! | CTCACCTATGCTGGTTATCC+AGG | + | chr2_1:19365041-19365060 | Msa0199940:intron | 50.0% |
| ! | ACCTATGCTGGTTATCCAGG+TGG | + | chr2_1:19365044-19365063 | Msa0199940:intron | 50.0% |
| TCCACCTGGATAACCAGCAT+AGG | - | chr2_1:19365048-19365067 | None:intergenic | 50.0% | |
| GGCCTAACCAATTTCACCAC+AGG | + | chr2_1:19365240-19365259 | Msa0199940:CDS | 50.0% | |
| GCCTTTGCCTGTGGTGAAAT+TGG | - | chr2_1:19365250-19365269 | None:intergenic | 50.0% | |
| TTTCACCACAGGCAAAGGCA+AGG | + | chr2_1:19365251-19365270 | Msa0199940:CDS | 50.0% | |
| ATTGACCTTGCCTTTGCCTG+TGG | - | chr2_1:19365259-19365278 | None:intergenic | 50.0% | |
| CACTTCAAGAGGTCGAACGT+TGG | - | chr2_1:19365292-19365311 | None:intergenic | 50.0% | |
| TGCAGCATTGTCCGCAAGAT+GGG | + | chr2_1:19365318-19365337 | Msa0199940:CDS | 50.0% | |
| CTTCGCCATATCCCATCTTG+CGG | - | chr2_1:19365332-19365351 | None:intergenic | 50.0% | |
| ! | CACGTTTTGCACGGCTGAAC+TGG | + | chr2_1:19362704-19362723 | Msa0199940:five_prime_UTR | 55.0% |
| GACCCAACATCCTACTTCGG+AGG | + | chr2_1:19363128-19363147 | Msa0199940:CDS | 55.0% | |
| GTGTCGGACACATGGACATG+AGG | - | chr2_1:19363438-19363457 | None:intergenic | 55.0% | |
| ACATCCGACACGGCATGTGT+CGG | - | chr2_1:19363454-19363473 | None:intergenic | 55.0% | |
| !! | CACTCAAGCGTTGACATCGC+CGG | - | chr2_1:19364045-19364064 | None:intergenic | 55.0% |
| GGTAAACTACAGCGTCCACC+TGG | - | chr2_1:19365062-19365081 | None:intergenic | 55.0% | |
| GTGCAGCATTGTCCGCAAGA+TGG | + | chr2_1:19365317-19365336 | Msa0199940:CDS | 55.0% | |
| CGCAAGATGGGATATGGCGA+AGG | + | chr2_1:19365330-19365349 | Msa0199940:CDS | 55.0% | |
| GATATGGCGAAGGCTTCCAG+TGG | + | chr2_1:19365340-19365359 | Msa0199940:CDS | 55.0% | |
| CACGGCATGTGTCGGACACA+TGG | - | chr2_1:19363446-19363465 | None:intergenic | 60.0% | |
| GTGTCCGACACATGCCGTGT+CGG | + | chr2_1:19363447-19363466 | Msa0199940:intron | 60.0% | |
| CACATGCCGTGTCGGATGTG+TGG | + | chr2_1:19363455-19363474 | Msa0199940:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 19362699 | 19365647 | 19362699 | ID=Msa0199940;Name=Msa0199940 |
| chr2_1 | mRNA | 19362699 | 19365647 | 19362699 | ID=Msa0199940-mRNA-1;Parent=Msa0199940;Name=Msa0199940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=193|1|1|1|1|1|3|264|193 |
| chr2_1 | exon | 19362699 | 19363020 | 19362699 | ID=Msa0199940-mRNA-1:exon:8035;Parent=Msa0199940-mRNA-1 |
| chr2_1 | exon | 19363108 | 19363239 | 19363108 | ID=Msa0199940-mRNA-1:exon:8036;Parent=Msa0199940-mRNA-1 |
| chr2_1 | exon | 19365063 | 19365647 | 19365063 | ID=Msa0199940-mRNA-1:exon:8037;Parent=Msa0199940-mRNA-1 |
| chr2_1 | five_prime_UTR | 19362699 | 19362891 | 19362699 | ID=Msa0199940-mRNA-1:five_prime_utr;Parent=Msa0199940-mRNA-1 |
| chr2_1 | CDS | 19362892 | 19363020 | 19362892 | ID=Msa0199940-mRNA-1:cds;Parent=Msa0199940-mRNA-1 |
| chr2_1 | CDS | 19363108 | 19363239 | 19363108 | ID=Msa0199940-mRNA-1:cds;Parent=Msa0199940-mRNA-1 |
| chr2_1 | CDS | 19365063 | 19365383 | 19365063 | ID=Msa0199940-mRNA-1:cds;Parent=Msa0199940-mRNA-1 |
| chr2_1 | three_prime_UTR | 19365384 | 19365647 | 19365384 | ID=Msa0199940-mRNA-1:three_prime_utr;Parent=Msa0199940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
