AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065470 MtrunA17_Chr1g0168671 95.302 149 7 0 37 185 1 149 3.08e-103 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065470 AT1G04555.1 63.889 144 52 0 43 186 5 148 1.55e-58 180
Msa0065470 AT4G33380.1 30.345 145 90 4 47 184 18 158 3.69e-11 61.2

Find 63 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTTCTGGGCTGTTTC+TGG 0.133948 1_2:-27706794 None:intergenic
TCTGCTTCGTGTCTTTCTTC+TGG 0.172972 1_2:-27706805 None:intergenic
ACTGCTATCTTCCTTCTTCA+TGG 0.249497 1_2:+27703072 Msa0065470:CDS
TGCTAAGTTAAATGTGTAAT+AGG 0.269239 1_2:+27708608 Msa0065470:three_prime_UTR
CTGCGGTTGATTTGTCTAAA+AGG 0.270731 1_2:+27706831 Msa0065470:CDS
CTTTGGAGGAATGGCGTAAA+AGG 0.283674 1_2:+27708486 Msa0065470:CDS
CTGCTTCGTGTCTTTCTTCT+GGG 0.289507 1_2:-27706804 None:intergenic
TAGAATTTGGTGCGGGTGTA+AGG 0.305116 1_2:-27703111 None:intergenic
GAAGGATGTCATTCCGGATA+TGG 0.315459 1_2:-27708792 None:intergenic
TCGTCTTGCCATGCTTCCTT+TGG 0.365973 1_2:+27704829 Msa0065470:CDS
CTTCTGGGCTGTTTCTGGTT+CGG 0.381648 1_2:-27706789 None:intergenic
GCTAAGTTAAATGTGTAATA+GGG 0.401034 1_2:+27708609 Msa0065470:three_prime_UTR
AGGTCCCACGGCGTGAATAT+AGG 0.407442 1_2:+27702904 Msa0065470:CDS
CAAGCTGGCGGCATCGTTCA+AGG 0.426188 1_2:-27706870 None:intergenic
TTCAATCATAACAAAACAAA+TGG 0.428311 1_2:+27702975 Msa0065470:CDS
AGCTGAACTCAGTTACATAA+AGG 0.447507 1_2:+27704793 Msa0065470:intron
GCAAACAAGATCAAGGCATA+TGG 0.478442 1_2:-27708895 None:intergenic
TGATTTGTCTAAAAGGCTAA+AGG 0.478881 1_2:+27706838 Msa0065470:CDS
TATATAAAGTCAAGATTGAG+AGG 0.480669 1_2:-27708558 None:intergenic
AACGATGCCGCCAGCTTGAA+AGG 0.485394 1_2:+27706875 Msa0065470:CDS
GAGGGCGAGACAAAGACAAT+TGG 0.490395 1_2:+27708517 Msa0065470:CDS
AAGAATGGTTGCGTTCTTGA+AGG 0.492469 1_2:-27703028 None:intergenic
GATTCTCAGCTTTGGAGGAA+TGG 0.496368 1_2:+27708477 Msa0065470:intron
AGATAGCAGTGATGATATTG+AGG 0.497537 1_2:-27703059 None:intergenic
AGAAAAGAGGAGAGACAGAG+AGG 0.501813 1_2:+27708753 Msa0065470:three_prime_UTR
AAGAAGGAAGGATGTCATTC+CGG 0.507574 1_2:-27708798 None:intergenic
CTTATAAGCAAACAAGATCA+AGG 0.509621 1_2:-27708902 None:intergenic
TGAAGAAGAAGCCATGAAGA+AGG 0.512694 1_2:-27703083 None:intergenic
TTCGTGATTCTCAGCTTTGG+AGG 0.517039 1_2:+27708472 Msa0065470:intron
AGTGGAGAGAGAATAGAGAG+AGG 0.523701 1_2:+27708715 Msa0065470:three_prime_UTR
AGACGGAGAGGATCCATATC+CGG 0.539155 1_2:+27708779 Msa0065470:three_prime_UTR
TGAGAGAGATTGAGCAGGAA+GGG 0.541006 1_2:+27706762 Msa0065470:CDS
TATTAGCTCCAAAGGAAGCA+TGG 0.541044 1_2:-27704837 None:intergenic
GAGTTTACAAGAGAGAAAAG+AGG 0.555516 1_2:+27708740 Msa0065470:three_prime_UTR
TACTCTGAAAACACCAACTC+AGG 0.557029 1_2:+27703132 Msa0065470:CDS
TCAGGTGAGAGAGATTGAGC+AGG 0.557629 1_2:+27706757 Msa0065470:intron
GAGAGACAGAGAGGATGAGA+CGG 0.566240 1_2:+27708762 Msa0065470:three_prime_UTR
TGTGTAATAGGGAAATTAGC+AGG 0.567315 1_2:+27708620 Msa0065470:three_prime_UTR
TTCAGAGTAGAATTTGGTGC+GGG 0.572068 1_2:-27703118 None:intergenic
TGTTGAAAACAAAGAGAGAG+TGG 0.572542 1_2:+27708697 Msa0065470:three_prime_UTR
GAGGGTTAACCAACCTGAGT+TGG 0.581042 1_2:-27703145 None:intergenic
GTGAGAGAGATTGAGCAGGA+AGG 0.582348 1_2:+27706761 Msa0065470:CDS
ATTGAGGAAACAGACAAGAA+TGG 0.585604 1_2:-27703043 None:intergenic
ATTTCCTATATTCACGCCGT+GGG 0.586440 1_2:-27702908 None:intergenic
GCTGAAGGTGAGTCACAAGA+AGG 0.586863 1_2:-27708814 None:intergenic
TGGCGGCATCGTTCAAGGAA+CGG 0.593127 1_2:-27706865 None:intergenic
AAGATGAAAACCTTTCAAGC+TGG 0.598826 1_2:-27706885 None:intergenic
TATTTCCTATATTCACGCCG+TGG 0.612642 1_2:-27702909 None:intergenic
ATGAAAACCTTTCAAGCTGG+CGG 0.616091 1_2:-27706882 None:intergenic
AAGGTGAGTCACAAGAAGGA+AGG 0.616323 1_2:-27708810 None:intergenic
AATCATAACAAAACAAATGG+AGG 0.622789 1_2:+27702978 Msa0065470:CDS
GCATCATCATCGTAACACAT+TGG 0.623456 1_2:+27708667 Msa0065470:three_prime_UTR
AAATGGAGGTACAACAATGG+TGG 0.628376 1_2:+27702992 Msa0065470:CDS
AAAACAAAACGAGTAGCTGA+AGG 0.633897 1_2:-27708829 None:intergenic
ATACAAGCAGCAAGGTCCCA+CGG 0.649521 1_2:+27702892 Msa0065470:CDS
TTTCAGAGTAGAATTTGGTG+CGG 0.658566 1_2:-27703119 None:intergenic
GGCGTAAAAGGAAAATCGAG+AGG 0.668939 1_2:+27708498 Msa0065470:CDS
ACAGAGAGGATGAGACGGAG+AGG 0.670450 1_2:+27708767 Msa0065470:three_prime_UTR
AACAAATGGAGGTACAACAA+TGG 0.672529 1_2:+27702989 Msa0065470:CDS
ATAAAGTCAAGATTGAGAGG+AGG 0.675762 1_2:-27708555 None:intergenic
GATTGACAATACAAGCAGCA+AGG 0.687449 1_2:+27702884 None:intergenic
GCGTAAAAGGAAAATCGAGA+GGG 0.690961 1_2:+27708499 Msa0065470:CDS
AGACACGAAGCAGACAGCTG+CGG 0.704640 1_2:+27706814 Msa0065470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATGTCTTTTTTTTTT+TGG + chr1_2:27703294-27703313 Msa0065470:intron 10.0%
!!! AATTATGTCTTTTTTTTTTT+GGG + chr1_2:27703295-27703314 Msa0065470:intron 10.0%
!!! AATTTTATTTTTAGGAAATA+GGG - chr1_2:27706984-27707003 None:intergenic 10.0%
!!! TAATTTTATTTTTAGGAAAT+AGG - chr1_2:27706985-27707004 None:intergenic 10.0%
!!! AAATTTACAATTTTGATATT+TGG + chr1_2:27708086-27708105 Msa0065470:intron 10.0%
!!! TCTTTATATGTATAATTTTT+AGG - chr1_2:27708863-27708882 None:intergenic 10.0%
!!! AATTGTTTAAAACTATTTTG+CGG + chr1_2:27704876-27704895 Msa0065470:intron 15.0%
!!! TACATTTTAATTCAAGTTAA+CGG - chr1_2:27704995-27705014 None:intergenic 15.0%
!! AATCATGTTAGATATAAATT+GGG - chr1_2:27706527-27706546 None:intergenic 15.0%
!! TAATCATGTTAGATATAAAT+TGG - chr1_2:27706528-27706547 None:intergenic 15.0%
!!! TCGTGAATAATTTTATTTTT+AGG - chr1_2:27706992-27707011 None:intergenic 15.0%
!! AAATAATTACTAAAACTCAT+TGG - chr1_2:27707022-27707041 None:intergenic 15.0%
!! TATTAACAATGATAAATTGA+AGG + chr1_2:27707242-27707261 Msa0065470:intron 15.0%
!! ATTAACAATGATAAATTGAA+GGG + chr1_2:27707243-27707262 Msa0065470:intron 15.0%
!! AAATGTCAATTAAATCATAT+AGG + chr1_2:27707453-27707472 Msa0065470:intron 15.0%
!! AGTCGTTATATTATAAAAAT+AGG - chr1_2:27707918-27707937 None:intergenic 15.0%
!!! ATGAATTTTAAATATTTAGC+TGG - chr1_2:27708059-27708078 None:intergenic 15.0%
!!! GCTAAATATTTAAAATTCAT+TGG + chr1_2:27708059-27708078 Msa0065470:intron 15.0%
!!! ATTTGTTTTGTTATGATTGA+AGG - chr1_2:27702976-27702995 None:intergenic 20.0%
!! TTCAATCATAACAAAACAAA+TGG + chr1_2:27702975-27702994 Msa0065470:CDS 20.0%
!! ATAAAATGAAGAAAATTGTG+AGG - chr1_2:27703190-27703209 None:intergenic 20.0%
!! TATAACTTCAAACCTATAAT+GGG + chr1_2:27703214-27703233 Msa0065470:intron 20.0%
!! AAATATCAAAAACCCATTAT+AGG - chr1_2:27703229-27703248 None:intergenic 20.0%
!!! ATAATGGGTTTTTGATATTT+TGG + chr1_2:27703229-27703248 Msa0065470:intron 20.0%
!!! GAATTTTGATTGCTAATTAT+TGG + chr1_2:27703565-27703584 Msa0065470:intron 20.0%
!!! GTTATTTTCTCGTAATTTTT+TGG - chr1_2:27704264-27704283 None:intergenic 20.0%
!!! TTGTTTTATTCTAAAGTGAT+CGG + chr1_2:27705248-27705267 Msa0065470:intron 20.0%
!! ATCTCCTTAAAATTTGAATT+GGG - chr1_2:27705373-27705392 None:intergenic 20.0%
!! TATCTCCTTAAAATTTGAAT+TGG - chr1_2:27705374-27705393 None:intergenic 20.0%
!! ATCATCTTAGAATTTAGATT+GGG - chr1_2:27705559-27705578 None:intergenic 20.0%
!! TATCATCTTAGAATTTAGAT+TGG - chr1_2:27705560-27705579 None:intergenic 20.0%
!!! ATCATGTTTTTATGTTTCTT+GGG - chr1_2:27705765-27705784 None:intergenic 20.0%
!!! AATCATGTTTTTATGTTTCT+TGG - chr1_2:27705766-27705785 None:intergenic 20.0%
!! ATATTAAGTATTTGACTACA+TGG - chr1_2:27705812-27705831 None:intergenic 20.0%
!! AGATTAATAATTATAGCACA+AGG - chr1_2:27705924-27705943 None:intergenic 20.0%
!! AAAAAAAAAAAAGAAAGCAG+AGG - chr1_2:27706241-27706260 None:intergenic 20.0%
!! CTAAAAAACAAAGAAAATAG+AGG - chr1_2:27706289-27706308 None:intergenic 20.0%
!!! ATTTTCTTTGTTTTTTAGCT+TGG + chr1_2:27706291-27706310 Msa0065470:intron 20.0%
!! ATCATGTTAGATATAAATTG+GGG - chr1_2:27706526-27706545 None:intergenic 20.0%
!! TAAAAATTAGTTAGTAAGCA+GGG - chr1_2:27706563-27706582 None:intergenic 20.0%
!! ATTCCAAAAAAAACAAAACT+TGG - chr1_2:27706699-27706718 None:intergenic 20.0%
!! AAAATGGTTATGATTAAGAA+AGG - chr1_2:27706924-27706943 None:intergenic 20.0%
!!! TAATTAGTGTTGTTTGTAAT+TGG + chr1_2:27707122-27707141 Msa0065470:intron 20.0%
!!! AATTAGTGTTGTTTGTAATT+GGG + chr1_2:27707123-27707142 Msa0065470:intron 20.0%
!!! ATTGTTACTTTTTTGTTGAA+GGG - chr1_2:27707201-27707220 None:intergenic 20.0%
!!! TATTGTTACTTTTTTGTTGA+AGG - chr1_2:27707202-27707221 None:intergenic 20.0%
!! ATTGAACATTAGAAAATTGA+CGG + chr1_2:27707294-27707313 Msa0065470:intron 20.0%
!!! AATTGATTTGTGCATTTTTT+AGG + chr1_2:27707405-27707424 Msa0065470:intron 20.0%
!!! ATTTTTTAGGAGTGATATAA+TGG + chr1_2:27707418-27707437 Msa0065470:intron 20.0%
!! TCAATAAATGCTCAATTATA+TGG + chr1_2:27707616-27707635 Msa0065470:intron 20.0%
!! CAATAAATGCTCAATTATAT+GGG + chr1_2:27707617-27707636 Msa0065470:intron 20.0%
!! TTATAAAAATAGGTCATGTT+TGG - chr1_2:27707908-27707927 None:intergenic 20.0%
!!! ATTTATATTAGAAGCATGAA+GGG - chr1_2:27708151-27708170 None:intergenic 20.0%
!! AATAAATTCATGTAAGTTCA+AGG - chr1_2:27708186-27708205 None:intergenic 20.0%
!! AATCGTTTAATCCAAATATT+TGG - chr1_2:27708293-27708312 None:intergenic 20.0%
!! ATTAAACGATTCATGATATT+TGG + chr1_2:27708302-27708321 Msa0065470:intron 20.0%
! AATCATAACAAAACAAATGG+AGG + chr1_2:27702978-27702997 Msa0065470:CDS 25.0%
!! CATTATAGGTTTGAAGTTAT+AGG - chr1_2:27703215-27703234 None:intergenic 25.0%
! CTATAACTTCAAACCTATAA+TGG + chr1_2:27703213-27703232 Msa0065470:intron 25.0%
!!! AAAGTGTGTTTTTTTCCTTT+TGG + chr1_2:27703265-27703284 Msa0065470:intron 25.0%
!!! AAGTGTGTTTTTTTCCTTTT+GGG + chr1_2:27703266-27703285 Msa0065470:intron 25.0%
! TTGTTAGATTGTGATTTACT+AGG + chr1_2:27703394-27703413 Msa0065470:intron 25.0%
! AAATGAAAATAGTAGAGTTG+CGG + chr1_2:27703727-27703746 Msa0065470:intron 25.0%
! AAAGTTCATCACTTAAACTA+AGG - chr1_2:27703931-27703950 None:intergenic 25.0%
!! ATTTTTGTTACTAGAGAGAA+AGG + chr1_2:27703987-27704006 Msa0065470:intron 25.0%
! TTACGAGAAAATAACATTAG+AGG + chr1_2:27704269-27704288 Msa0065470:intron 25.0%
! AGATAAATGAAAACAAGGAA+TGG - chr1_2:27704461-27704480 None:intergenic 25.0%
!!! AAACATTCTATTTTGAGCAT+TGG + chr1_2:27704654-27704673 Msa0065470:intron 25.0%
!!! AACATTCTATTTTGAGCATT+GGG + chr1_2:27704655-27704674 Msa0065470:intron 25.0%
!!! CATATACAAAGTCATTTTTC+TGG + chr1_2:27705015-27705034 Msa0065470:intron 25.0%
! GAAATTACTTAATGATTTCC+AGG - chr1_2:27705065-27705084 None:intergenic 25.0%
!! ACAATTGAAAAGTATGATGT+TGG - chr1_2:27705171-27705190 None:intergenic 25.0%
!! TAAGCCCAATTCAAATTTTA+AGG + chr1_2:27705366-27705385 Msa0065470:intron 25.0%
! TTAAGGAGATATCATAATCT+TGG + chr1_2:27705383-27705402 Msa0065470:intron 25.0%
! TAATCTATAATCACTACTCA+GGG - chr1_2:27705508-27705527 None:intergenic 25.0%
! ATAATCTATAATCACTACTC+AGG - chr1_2:27705509-27705528 None:intergenic 25.0%
! TAGATTAGTAGAATCATGTT+AGG + chr1_2:27705533-27705552 Msa0065470:intron 25.0%
! ACATGAATAGTAGTTATAAC+TGG + chr1_2:27705693-27705712 Msa0065470:intron 25.0%
! CAAAGAATATAGAGGAAAAA+CGG - chr1_2:27706322-27706341 None:intergenic 25.0%
! GAAATAGACAAAGAATATAG+AGG - chr1_2:27706330-27706349 None:intergenic 25.0%
! GTAAAAATTAGTTAGTAAGC+AGG - chr1_2:27706564-27706583 None:intergenic 25.0%
! TAAGATAAGGTTTCCTATAA+TGG + chr1_2:27706607-27706626 Msa0065470:intron 25.0%
!! ATGATTAAGAAAGGTATGTA+GGG - chr1_2:27706915-27706934 None:intergenic 25.0%
!! TATGATTAAGAAAGGTATGT+AGG - chr1_2:27706916-27706935 None:intergenic 25.0%
! CTGTGTTTGCAAATAAAAAA+TGG - chr1_2:27706940-27706959 None:intergenic 25.0%
! TAGTGTGATATAATAAACTG+TGG + chr1_2:27707061-27707080 Msa0065470:intron 25.0%
! ATTTGTGTTTGAATGCTTAT+AGG + chr1_2:27707151-27707170 Msa0065470:intron 25.0%
! TTGAACATTAGAAAATTGAC+GGG + chr1_2:27707295-27707314 Msa0065470:intron 25.0%
! TAGTGTAATATGAGCAAAAT+GGG - chr1_2:27707647-27707666 None:intergenic 25.0%
! ATAGTGTAATATGAGCAAAA+TGG - chr1_2:27707648-27707667 None:intergenic 25.0%
!! TAGTTGCAAAAGAGAATTTT+TGG + chr1_2:27707844-27707863 Msa0065470:intron 25.0%
!! AGTTGCAAAAGAGAATTTTT+GGG + chr1_2:27707845-27707864 Msa0065470:intron 25.0%
! AAAACAAAATGAAAAGATGC+TGG + chr1_2:27707979-27707998 Msa0065470:intron 25.0%
! TTTAGCTGGAAGAAATATAT+AGG - chr1_2:27708045-27708064 None:intergenic 25.0%
!! GATTTATATTAGAAGCATGA+AGG - chr1_2:27708152-27708171 None:intergenic 25.0%
!! TCTTTAGAAAGAAGAACAAA+TGG - chr1_2:27708259-27708278 None:intergenic 25.0%
! ATTAAAACCAATGTCAATAC+AGG - chr1_2:27708440-27708459 None:intergenic 25.0%
! TATATAAAGTCAAGATTGAG+AGG - chr1_2:27708561-27708580 None:intergenic 25.0%
! TGCTAAGTTAAATGTGTAAT+AGG + chr1_2:27708608-27708627 Msa0065470:three_prime_UTR 25.0%
! GCTAAGTTAAATGTGTAATA+GGG + chr1_2:27708609-27708628 Msa0065470:three_prime_UTR 25.0%
!!! AGCATATCATTGTTACTTTT+TGG + chr1_2:27708923-27708942 Msa0065470:three_prime_UTR 25.0%
AAAAGTGAGATAGAAGAAGA+GGG - chr1_2:27703166-27703185 None:intergenic 30.0%
AAAAAGTGAGATAGAAGAAG+AGG - chr1_2:27703167-27703186 None:intergenic 30.0%
!!! AGTGTGTTTTTTTCCTTTTG+GGG + chr1_2:27703267-27703286 Msa0065470:intron 30.0%
!! TTTTGGGTGATTTGATTATG+AGG + chr1_2:27703311-27703330 Msa0065470:intron 30.0%
GTGATTTGATTATGAGGTAA+AGG + chr1_2:27703317-27703336 Msa0065470:intron 30.0%
ATTTGATTATGAGGTAAAGG+AGG + chr1_2:27703320-27703339 Msa0065470:intron 30.0%
ATAGTCACTAGCATTTAAGT+TGG - chr1_2:27703437-27703456 None:intergenic 30.0%
TGCTAGTGACTATTTGTATT+TGG + chr1_2:27703444-27703463 Msa0065470:intron 30.0%
TAGTGACTATTTGTATTTGG+TGG + chr1_2:27703447-27703466 Msa0065470:intron 30.0%
TTAGGATTGTGAATTTGAGT+TGG + chr1_2:27703480-27703499 Msa0065470:intron 30.0%
!! ATTGTGAATTTGAGTTGGAT+TGG + chr1_2:27703485-27703504 Msa0065470:intron 30.0%
TGAGAGTAAATTAAGCATAG+TGG + chr1_2:27703646-27703665 Msa0065470:intron 30.0%
AAGACTAGACATGATAGAAT+TGG + chr1_2:27703704-27703723 Msa0065470:intron 30.0%
ACAGTTATTGTTTGCAGATT+GGG - chr1_2:27704210-27704229 None:intergenic 30.0%
AACAGTTATTGTTTGCAGAT+TGG - chr1_2:27704211-27704230 None:intergenic 30.0%
!!! ATTTTTTGGAGTCATAACAG+CGG - chr1_2:27704250-27704269 None:intergenic 30.0%
CACACAGATAAATGAAAACA+AGG - chr1_2:27704466-27704485 None:intergenic 30.0%
TATTTAACTCATAGCATGCT+TGG + chr1_2:27704504-27704523 Msa0065470:intron 30.0%
TTCTTAATCCTATACGTAAC+AGG - chr1_2:27704581-27704600 None:intergenic 30.0%
! ACTCTTTTTATTAGCTCCAA+AGG - chr1_2:27704848-27704867 None:intergenic 30.0%
AGTTAACGGTAATGAGTATA+AGG - chr1_2:27704981-27705000 None:intergenic 30.0%
!!! GCTGAATTTTTTTTGTTTCC+TGG + chr1_2:27705044-27705063 Msa0065470:intron 30.0%
GTTCACACTTCAAATATCTT+TGG + chr1_2:27705438-27705457 Msa0065470:intron 30.0%
! AAATATCTTTGGCACTGAAA+GGG + chr1_2:27705449-27705468 Msa0065470:intron 30.0%
GGCATATTAATTTCCAATGT+GGG - chr1_2:27705487-27705506 None:intergenic 30.0%
AAATTTCTTTGAGTGTGAGA+AGG + chr1_2:27705639-27705658 Msa0065470:intron 30.0%
!! TGTTTTTATGTTTCTTGGGT+TGG - chr1_2:27705761-27705780 None:intergenic 30.0%
!! TAATATTCCATTTGCTGTGT+AGG + chr1_2:27705826-27705845 Msa0065470:intron 30.0%
TATATATCCTACACAGCAAA+TGG - chr1_2:27705836-27705855 None:intergenic 30.0%
TGAAAAGTTTCTTGGCTAAT+TGG - chr1_2:27706002-27706021 None:intergenic 30.0%
! CAAGAAACTTTTCAAACTCT+CGG + chr1_2:27706008-27706027 Msa0065470:intron 30.0%
! AAGAAACTTTTCAAACTCTC+GGG + chr1_2:27706009-27706028 Msa0065470:intron 30.0%
ATCAAGGACATTAACATGAA+AGG - chr1_2:27706056-27706075 None:intergenic 30.0%
AGAAAATAGAGGAAAAACAG+AGG - chr1_2:27706278-27706297 None:intergenic 30.0%
!! TCGTTTTTATGTTCCTTAAC+CGG + chr1_2:27706403-27706422 Msa0065470:intron 30.0%
CATAACATATCGGTAAGATA+AGG + chr1_2:27706594-27706613 Msa0065470:intron 30.0%
!! TTCCTATAATGGATTCACAA+TGG + chr1_2:27706618-27706637 Msa0065470:intron 30.0%
!! TCCTATAATGGATTCACAAT+GGG + chr1_2:27706619-27706638 Msa0065470:intron 30.0%
!!! GCACCAAGTTTTGTTTTTTT+TGG + chr1_2:27706693-27706712 Msa0065470:intron 30.0%
! TGATTTGTCTAAAAGGCTAA+AGG + chr1_2:27706838-27706857 Msa0065470:CDS 30.0%
! AGTCCTTTCAATTTGGTTTA+TGG + chr1_2:27707270-27707289 Msa0065470:intron 30.0%
! GTCCTTTCAATTTGGTTTAT+GGG + chr1_2:27707271-27707290 Msa0065470:intron 30.0%
ATCCCATAAACCAAATTGAA+AGG - chr1_2:27707276-27707295 None:intergenic 30.0%
TGAACATTAGAAAATTGACG+GGG + chr1_2:27707296-27707315 Msa0065470:intron 30.0%
ATATTGGCCAAAATATTAGG+GGG - chr1_2:27707528-27707547 None:intergenic 30.0%
GATATTGGCCAAAATATTAG+GGG - chr1_2:27707529-27707548 None:intergenic 30.0%
GGATATTGGCCAAAATATTA+GGG - chr1_2:27707530-27707549 None:intergenic 30.0%
CATTATTTGACAACAGTAGT+AGG - chr1_2:27707706-27707725 None:intergenic 30.0%
CTATCCTAGTTTCATTACAA+GGG + chr1_2:27707783-27707802 Msa0065470:intron 30.0%
TAATATAACGACTGAAGACA+CGG + chr1_2:27707925-27707944 Msa0065470:intron 30.0%
! TGTTCTTCTTTCTAAAGACT+TGG + chr1_2:27708261-27708280 Msa0065470:intron 30.0%
!! TTGTTCTTTTTCTGAAGACT+TGG - chr1_2:27708334-27708353 None:intergenic 30.0%
CAAAGACAATTGGAGAAAAA+TGG + chr1_2:27708527-27708546 Msa0065470:CDS 30.0%
CTTATAAGCAAACAAGATCA+AGG - chr1_2:27708905-27708924 None:intergenic 30.0%
! TATACTACAACATTTTGCTC+AGG + chr1_2:27708975-27708994 Msa0065470:three_prime_UTR 30.0%
! ATACTACAACATTTTGCTCA+GGG + chr1_2:27708976-27708995 Msa0065470:three_prime_UTR 30.0%
! AACAAATGGAGGTACAACAA+TGG + chr1_2:27702989-27703008 Msa0065470:CDS 35.0%
ATTGAGGAAACAGACAAGAA+TGG - chr1_2:27703046-27703065 None:intergenic 35.0%
AGATAGCAGTGATGATATTG+AGG - chr1_2:27703062-27703081 None:intergenic 35.0%
! TTTCAGAGTAGAATTTGGTG+CGG - chr1_2:27703122-27703141 None:intergenic 35.0%
! GGTGTTTTCAGAGTAGAATT+TGG - chr1_2:27703127-27703146 None:intergenic 35.0%
!!! GTGTGTTTTTTTCCTTTTGG+GGG + chr1_2:27703268-27703287 Msa0065470:intron 35.0%
! ACATAATTTTCACCCCCAAA+AGG - chr1_2:27703283-27703302 None:intergenic 35.0%
GTAAAGGAGGTTGAATTTGT+TGG + chr1_2:27703333-27703352 Msa0065470:intron 35.0%
! TTTGGTGGTTCTTAGACTTT+AGG + chr1_2:27703462-27703481 Msa0065470:intron 35.0%
!! TGTTTGCTATGACAAAGTGT+TGG + chr1_2:27703606-27703625 Msa0065470:intron 35.0%
!! GTTTGCTATGACAAAGTGTT+GGG + chr1_2:27703607-27703626 Msa0065470:intron 35.0%
AGTACATATCGTGGAAAAGA+TGG + chr1_2:27703751-27703770 Msa0065470:intron 35.0%
TGGAAAAGATGGTACAAACT+CGG + chr1_2:27703762-27703781 Msa0065470:intron 35.0%
AGAAGACTCGTAGATTATGA+CGG + chr1_2:27703809-27703828 Msa0065470:intron 35.0%
TGAACTAGTGACTAATGTGT+CGG + chr1_2:27703950-27703969 Msa0065470:intron 35.0%
! GAAATTTTTGACAACTGCCA+CGG + chr1_2:27704104-27704123 Msa0065470:intron 35.0%
CAGTTATTGTTTGCAGATTG+GGG - chr1_2:27704209-27704228 None:intergenic 35.0%
TGTTCCATGATCTTGCATTA+TGG - chr1_2:27704314-27704333 None:intergenic 35.0%
GAACAGTCATAAAGATGCTA+AGG + chr1_2:27704329-27704348 Msa0065470:intron 35.0%
TCATTTATCTGTGTGAAGCA+TGG + chr1_2:27704471-27704490 Msa0065470:intron 35.0%
GAATCTTTGATACCATGTCA+TGG + chr1_2:27704532-27704551 Msa0065470:intron 35.0%
! ACGTAACAGGTAAAGCATTT+CGG - chr1_2:27704568-27704587 None:intergenic 35.0%
ATGCTTTACCTGTTACGTAT+AGG + chr1_2:27704570-27704589 Msa0065470:intron 35.0%
AGCTGAACTCAGTTACATAA+AGG + chr1_2:27704793-27704812 Msa0065470:intron 35.0%
TTGATTGTGAAGTCAGTTGA+CGG + chr1_2:27705086-27705105 Msa0065470:intron 35.0%
CTCTTATTCGACTATGTTTG+GGG - chr1_2:27705213-27705232 None:intergenic 35.0%
CCTCTTATTCGACTATGTTT+GGG - chr1_2:27705214-27705233 None:intergenic 35.0%
CCAAACATAGTCGAATAAGA+GGG + chr1_2:27705212-27705231 Msa0065470:intron 35.0%
GCAATATCACTTTCCAATGT+GGG - chr1_2:27705301-27705320 None:intergenic 35.0%
AGCAATATCACTTTCCAATG+TGG - chr1_2:27705302-27705321 None:intergenic 35.0%
GGAAAGTGATATTGCTTGAA+TGG + chr1_2:27705306-27705325 Msa0065470:intron 35.0%
! CAAATATCTTTGGCACTGAA+AGG + chr1_2:27705448-27705467 Msa0065470:intron 35.0%
GGGCATATTAATTTCCAATG+TGG - chr1_2:27705488-27705507 None:intergenic 35.0%
! TGGCTCAACAAATCTAGAAT+AGG - chr1_2:27705589-27705608 None:intergenic 35.0%
CATGTCATCATTATCCAATG+TGG - chr1_2:27705678-27705697 None:intergenic 35.0%
!!! TCACTAACAGGTTGATTTTG+TGG + chr1_2:27705722-27705741 Msa0065470:intron 35.0%
!!! CACTAACAGGTTGATTTTGT+GGG + chr1_2:27705723-27705742 Msa0065470:intron 35.0%
!!! ACTAACAGGTTGATTTTGTG+GGG + chr1_2:27705724-27705743 Msa0065470:intron 35.0%
! TGATTTTGTGGGGTTGAATT+AGG + chr1_2:27705734-27705753 Msa0065470:intron 35.0%
!! ACATGGTGATGGGAATTATT+TGG - chr1_2:27705795-27705814 None:intergenic 35.0%
GTATTTGACTACATGGTGAT+GGG - chr1_2:27705805-27705824 None:intergenic 35.0%
AGTATTTGACTACATGGTGA+TGG - chr1_2:27705806-27705825 None:intergenic 35.0%
GAGTCTACATTTAGACATCA+TGG + chr1_2:27705863-27705882 Msa0065470:intron 35.0%
CTACATTTAGACATCATGGT+TGG + chr1_2:27705867-27705886 Msa0065470:intron 35.0%
CGAGAGTTTGAAAAGTTTCT+TGG - chr1_2:27706010-27706029 None:intergenic 35.0%
GAAAGGTCAAAAACAAACCT+TGG - chr1_2:27706039-27706058 None:intergenic 35.0%
CTTGATTCTCTTCTTCTTGA+GGG + chr1_2:27706070-27706089 Msa0065470:intron 35.0%
TTGATTCTCTTCTTCTTGAG+GGG + chr1_2:27706071-27706090 Msa0065470:intron 35.0%
AAAACAGAGCAAAAACGAAC+TGG - chr1_2:27706198-27706217 None:intergenic 35.0%
AGAATATAGAGGAAAAACGG+AGG - chr1_2:27706319-27706338 None:intergenic 35.0%
GGTAGGTTATTGATAGAGTT+GGG - chr1_2:27706354-27706373 None:intergenic 35.0%
GGTTAAGGAACATAAAAACG+AGG - chr1_2:27706404-27706423 None:intergenic 35.0%
TAGATATAAATTGGGGCCTT+CGG - chr1_2:27706519-27706538 None:intergenic 35.0%
TCCCTCATCTCATAACATAT+CGG + chr1_2:27706584-27706603 Msa0065470:intron 35.0%
ACCGATATGTTATGAGATGA+GGG - chr1_2:27706588-27706607 None:intergenic 35.0%
TACCGATATGTTATGAGATG+AGG - chr1_2:27706589-27706608 None:intergenic 35.0%
ACCCATTGTGAATCCATTAT+AGG - chr1_2:27706623-27706642 None:intergenic 35.0%
AAGATGAAAACCTTTCAAGC+TGG - chr1_2:27706888-27706907 None:intergenic 35.0%
CAACACTAATTAGAGATCCT+CGG - chr1_2:27707114-27707133 None:intergenic 35.0%
TATTGGCCAAAATATTAGGG+GGG - chr1_2:27707527-27707546 None:intergenic 35.0%
CGGATATTGGCCAAAATATT+AGG - chr1_2:27707531-27707550 None:intergenic 35.0%
AATACTAGTCCTATAAGCAG+TGG - chr1_2:27707554-27707573 None:intergenic 35.0%
TGCTCATATTACACTATGTC+TGG + chr1_2:27707651-27707670 Msa0065470:intron 35.0%
!! TAGGCTTTAAATCGAGGAAA+AGG - chr1_2:27707687-27707706 None:intergenic 35.0%
GTTGTCAAATAATGCGATAG+CGG + chr1_2:27707712-27707731 Msa0065470:intron 35.0%
GCTATCCTAGTTTCATTACA+AGG + chr1_2:27707782-27707801 Msa0065470:intron 35.0%
ATTGCCCTTGTAATGAAACT+AGG - chr1_2:27707790-27707809 None:intergenic 35.0%
AGATGCTGGCATTAATCATT+CGG + chr1_2:27707993-27708012 Msa0065470:intron 35.0%
CTTGGCTTATGCCAAATATT+TGG + chr1_2:27708279-27708298 Msa0065470:intron 35.0%
! TCTGAATCCTGTATTGACAT+TGG + chr1_2:27708430-27708449 Msa0065470:intron 35.0%
ATAAAGTCAAGATTGAGAGG+AGG - chr1_2:27708558-27708577 None:intergenic 35.0%
TGTGTAATAGGGAAATTAGC+AGG + chr1_2:27708620-27708639 Msa0065470:three_prime_UTR 35.0%
TGTTGAAAACAAAGAGAGAG+TGG + chr1_2:27708697-27708716 Msa0065470:three_prime_UTR 35.0%
GAGTTTACAAGAGAGAAAAG+AGG + chr1_2:27708740-27708759 Msa0065470:three_prime_UTR 35.0%
AAAACAAAACGAGTAGCTGA+AGG - chr1_2:27708832-27708851 None:intergenic 35.0%
ATTTCCTATATTCACGCCGT+GGG - chr1_2:27702911-27702930 None:intergenic 40.0%
TATTTCCTATATTCACGCCG+TGG - chr1_2:27702912-27702931 None:intergenic 40.0%
! AAATGGAGGTACAACAATGG+TGG + chr1_2:27702992-27703011 Msa0065470:CDS 40.0%
AAGAATGGTTGCGTTCTTGA+AGG - chr1_2:27703031-27703050 None:intergenic 40.0%
ACTGCTATCTTCCTTCTTCA+TGG + chr1_2:27703072-27703091 Msa0065470:CDS 40.0%
TGAAGAAGAAGCCATGAAGA+AGG - chr1_2:27703086-27703105 None:intergenic 40.0%
!! TTCAGAGTAGAATTTGGTGC+GGG - chr1_2:27703121-27703140 None:intergenic 40.0%
! TACTCTGAAAACACCAACTC+AGG + chr1_2:27703132-27703151 Msa0065470:CDS 40.0%
! TGGTGATGAGAATGTTACGT+TGG + chr1_2:27703666-27703685 Msa0065470:intron 40.0%
AGATGGTACAAACTCGGATT+AGG + chr1_2:27703768-27703787 Msa0065470:intron 40.0%
! AAACTCGGATTAGGTGGTTT+GGG + chr1_2:27703777-27703796 Msa0065470:intron 40.0%
TTATGACGGCATTTGATCCA+TGG + chr1_2:27703823-27703842 Msa0065470:intron 40.0%
AGTTTACTCAGATCAGCATG+TGG + chr1_2:27703900-27703919 Msa0065470:intron 40.0%
GTTTACTCAGATCAGCATGT+GGG + chr1_2:27703901-27703920 Msa0065470:intron 40.0%
!!! AGTGACTAATGTGTCGGTTT+TGG + chr1_2:27703956-27703975 Msa0065470:intron 40.0%
! GAGAAAGGCACACACAAATT+TGG + chr1_2:27704002-27704021 Msa0065470:intron 40.0%
TTCCCAGCGTTGTCAAATAT+CGG + chr1_2:27704050-27704069 Msa0065470:intron 40.0%
TTGTCAAATATCGGTCATGG+TGG + chr1_2:27704059-27704078 Msa0065470:intron 40.0%
ACAAAACGTCCTTCGCAAAT+TGG - chr1_2:27704130-27704149 None:intergenic 40.0%
! AATTTGCGAAGGACGTTTTG+TGG + chr1_2:27704129-27704148 Msa0065470:intron 40.0%
!!! ATTTTTTTGGCTTTCCGCCA+TGG + chr1_2:27704182-27704201 Msa0065470:intron 40.0%
CAGACCATAATGCAAGATCA+TGG + chr1_2:27704307-27704326 Msa0065470:intron 40.0%
AAACAAGGAATGGAGAAGCT+GGG - chr1_2:27704451-27704470 None:intergenic 40.0%
AAAACAAGGAATGGAGAAGC+TGG - chr1_2:27704452-27704471 None:intergenic 40.0%
TTTATCTGTGTGAAGCATGG+AGG + chr1_2:27704474-27704493 Msa0065470:intron 40.0%
! GGTAAAGCATTTCGGATGAT+TGG - chr1_2:27704560-27704579 None:intergenic 40.0%
TATTAGCTCCAAAGGAAGCA+TGG - chr1_2:27704840-27704859 None:intergenic 40.0%
TCTTCAGTTCATCCTCTAGT+TGG + chr1_2:27704910-27704929 Msa0065470:intron 40.0%
CGGTAATGAGTATAAGGCAA+AGG - chr1_2:27704975-27704994 None:intergenic 40.0%
! GTCAACTGACTTCACAATCA+AGG - chr1_2:27705087-27705106 None:intergenic 40.0%
GAACTGCAAGTTACTGTCAA+TGG - chr1_2:27705147-27705166 None:intergenic 40.0%
CCCAAACATAGTCGAATAAG+AGG + chr1_2:27705211-27705230 Msa0065470:intron 40.0%
CCCTCTTATTCGACTATGTT+TGG - chr1_2:27705215-27705234 None:intergenic 40.0%
AAAGTGATCGGTCATGTGAA+TGG + chr1_2:27705260-27705279 Msa0065470:intron 40.0%
! TATTTGAAGTGTGAACCGAC+TGG - chr1_2:27705434-27705453 None:intergenic 40.0%
! GTTTGTTGAAAGTCCCACAT+TGG + chr1_2:27705471-27705490 Msa0065470:intron 40.0%
TTTGTTGAGCCACCTGTTAT+TGG + chr1_2:27705597-27705616 Msa0065470:intron 40.0%
! AAACTTTTCAAACTCTCGGG+TGG + chr1_2:27706012-27706031 Msa0065470:intron 40.0%
CCTCAAGAAGAAGAGAATCA+AGG - chr1_2:27706072-27706091 None:intergenic 40.0%
CCTTGATTCTCTTCTTCTTG+AGG + chr1_2:27706069-27706088 Msa0065470:intron 40.0%
AGGAAAAACAGAGGAAACAG+GGG - chr1_2:27706221-27706240 None:intergenic 40.0%
GAGGAAAAACAGAGGAAACA+GGG - chr1_2:27706222-27706241 None:intergenic 40.0%
AGAGGAAAAACAGAGGAAAC+AGG - chr1_2:27706223-27706242 None:intergenic 40.0%
AGAAAGCAGAGGAAAAACAG+AGG - chr1_2:27706230-27706249 None:intergenic 40.0%
CGGTAGGTTATTGATAGAGT+TGG - chr1_2:27706355-27706374 None:intergenic 40.0%
ACACAGTTCGTAAGTAGGAT+CGG - chr1_2:27706375-27706394 None:intergenic 40.0%
ACGTAACACAGTTCGTAAGT+AGG - chr1_2:27706380-27706399 None:intergenic 40.0%
AGACCATCAACTGGTATTAG+AGG - chr1_2:27706484-27706503 None:intergenic 40.0%
AGATATAAATTGGGGCCTTC+GGG - chr1_2:27706518-27706537 None:intergenic 40.0%
ATATAGATCCTGCCATAGCA+GGG - chr1_2:27706663-27706682 None:intergenic 40.0%
AATATAGATCCTGCCATAGC+AGG - chr1_2:27706664-27706683 None:intergenic 40.0%
!! CTGCGGTTGATTTGTCTAAA+AGG + chr1_2:27706831-27706850 Msa0065470:CDS 40.0%
ATGAAAACCTTTCAAGCTGG+CGG - chr1_2:27706885-27706904 None:intergenic 40.0%
GTTTGAATGCTTATAGGCAG+TGG + chr1_2:27707157-27707176 Msa0065470:intron 40.0%
GGGTGTTAGTCCTTTCAATT+TGG + chr1_2:27707263-27707282 Msa0065470:intron 40.0%
CATTAGAAAATTGACGGGGT+TGG + chr1_2:27707300-27707319 Msa0065470:intron 40.0%
! TTACACTATGTCTGGAACCT+AGG + chr1_2:27707659-27707678 Msa0065470:intron 40.0%
AAATCGAGGAAAAGGATCCT+AGG - chr1_2:27707679-27707698 None:intergenic 40.0%
!! CAGTAGTAGGCTTTAAATCG+AGG - chr1_2:27707693-27707712 None:intergenic 40.0%
TGGCATTAATCATTCGGCAA+TGG + chr1_2:27707999-27708018 Msa0065470:intron 40.0%
! GAAGGGCATAAAAAGATTGC+AGG - chr1_2:27708134-27708153 None:intergenic 40.0%
CTGAGAATCACGAACATCAA+AGG - chr1_2:27708466-27708485 None:intergenic 40.0%
ATGTTCGTGATTCTCAGCTT+TGG + chr1_2:27708469-27708488 Msa0065470:intron 40.0%
GCGTAAAAGGAAAATCGAGA+GGG + chr1_2:27708499-27708518 Msa0065470:CDS 40.0%
GCATCATCATCGTAACACAT+TGG + chr1_2:27708667-27708686 Msa0065470:three_prime_UTR 40.0%
AAGAAGGAAGGATGTCATTC+CGG - chr1_2:27708801-27708820 None:intergenic 40.0%
GCAAACAAGATCAAGGCATA+TGG - chr1_2:27708898-27708917 None:intergenic 40.0%
!! TAGAATTTGGTGCGGGTGTA+AGG - chr1_2:27703114-27703133 None:intergenic 45.0%
CTGAAAACACCAACTCAGGT+TGG + chr1_2:27703136-27703155 Msa0065470:intron 45.0%
AGTTGCGGTAGTACATATCG+TGG + chr1_2:27703742-27703761 Msa0065470:intron 45.0%
! TGGTACAAACTCGGATTAGG+TGG + chr1_2:27703771-27703790 Msa0065470:intron 45.0%
! CAAACTCGGATTAGGTGGTT+TGG + chr1_2:27703776-27703795 Msa0065470:intron 45.0%
ACGGCATTTGATCCATGGAA+TGG + chr1_2:27703828-27703847 Msa0065470:intron 45.0%
! CTTATCCCACTAAGTGGGTT+TGG - chr1_2:27703856-27703875 None:intergenic 45.0%
CAAACCCACTTAGTGGGATA+AGG + chr1_2:27703854-27703873 Msa0065470:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_2:27703861-27703880 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - chr1_2:27703862-27703881 None:intergenic 45.0%
GACCGATATTTGACAACGCT+GGG - chr1_2:27704055-27704074 None:intergenic 45.0%
TGACCGATATTTGACAACGC+TGG - chr1_2:27704056-27704075 None:intergenic 45.0%
GCGTTGTCAAATATCGGTCA+TGG + chr1_2:27704056-27704075 Msa0065470:intron 45.0%
AGTCATAACAGCGGAATGGA+AGG - chr1_2:27704241-27704260 None:intergenic 45.0%
TTGGAGTCATAACAGCGGAA+TGG - chr1_2:27704245-27704264 None:intergenic 45.0%
AACAAGGAATGGAGAAGCTG+GGG - chr1_2:27704450-27704469 None:intergenic 45.0%
GGATGATTGGTACCATGACA+TGG - chr1_2:27704547-27704566 None:intergenic 45.0%
CATCCTCTAGTTGGAAGACT+TGG + chr1_2:27704919-27704938 Msa0065470:intron 45.0%
! TGAAGTCAGTTGACGGACAA+TGG + chr1_2:27705093-27705112 Msa0065470:intron 45.0%
GTTACTGTCAATGGCTGTCA+TGG - chr1_2:27705138-27705157 None:intergenic 45.0%
CTCTCTAGTGTGTGAGCTTT+AGG + chr1_2:27705942-27705961 Msa0065470:intron 45.0%
TCTTACGATTCTACGTGCCA+CGG + chr1_2:27706146-27706165 Msa0065470:intron 45.0%
AGTTCGTAAGTAGGATCGGT+AGG - chr1_2:27706371-27706390 None:intergenic 45.0%
AAGAAATGTAGCCAGGACTC+AGG - chr1_2:27706456-27706475 None:intergenic 45.0%
GGCTGATAAGAAATGTAGCC+AGG - chr1_2:27706463-27706482 None:intergenic 45.0%
CAGCCTCTAATACCAGTTGA+TGG + chr1_2:27706478-27706497 Msa0065470:intron 45.0%
TTTGGTTGCAGACCATCAAC+TGG - chr1_2:27706493-27706512 None:intergenic 45.0%
! AATGGATTCACAATGGGTCC+CGG + chr1_2:27706625-27706644 Msa0065470:intron 45.0%
ATCTGAGTGTCTTCTCCTTC+AGG + chr1_2:27706739-27706758 Msa0065470:intron 45.0%
TGAGAGAGATTGAGCAGGAA+GGG + chr1_2:27706762-27706781 Msa0065470:CDS 45.0%
! TCTTTCTTCTGGGCTGTTTC+TGG - chr1_2:27706797-27706816 None:intergenic 45.0%
CTGCTTCGTGTCTTTCTTCT+GGG - chr1_2:27706807-27706826 None:intergenic 45.0%
TCTGCTTCGTGTCTTTCTTC+TGG - chr1_2:27706808-27706827 None:intergenic 45.0%
TTAGAGATCCTCGGCTGATA+TGG - chr1_2:27707105-27707124 None:intergenic 45.0%
!! CTATAAGCAGTGGCGGATAT+TGG - chr1_2:27707544-27707563 None:intergenic 45.0%
CAATATCCGCCACTGCTTAT+AGG + chr1_2:27707542-27707561 Msa0065470:intron 45.0%
ACTAGTCCTATAAGCAGTGG+CGG - chr1_2:27707551-27707570 None:intergenic 45.0%
ATGAAACTAGGATAGCAGCG+AGG - chr1_2:27707778-27707797 None:intergenic 45.0%
TAGCAGAAACATGTAGTGGC+GGG - chr1_2:27707817-27707836 None:intergenic 45.0%
CTAGCAGAAACATGTAGTGG+CGG - chr1_2:27707818-27707837 None:intergenic 45.0%
CACCTAGCAGAAACATGTAG+TGG - chr1_2:27707821-27707840 None:intergenic 45.0%
AAATATATAGGACCCCCAGC+TGG - chr1_2:27708033-27708052 None:intergenic 45.0%
! TTCGTGATTCTCAGCTTTGG+AGG + chr1_2:27708472-27708491 Msa0065470:intron 45.0%
!! GATTCTCAGCTTTGGAGGAA+TGG + chr1_2:27708477-27708496 Msa0065470:intron 45.0%
! CTTTGGAGGAATGGCGTAAA+AGG + chr1_2:27708486-27708505 Msa0065470:CDS 45.0%
GGCGTAAAAGGAAAATCGAG+AGG + chr1_2:27708498-27708517 Msa0065470:CDS 45.0%
AGTGGAGAGAGAATAGAGAG+AGG + chr1_2:27708715-27708734 Msa0065470:three_prime_UTR 45.0%
AGAAAAGAGGAGAGACAGAG+AGG + chr1_2:27708753-27708772 Msa0065470:three_prime_UTR 45.0%
GAAGGATGTCATTCCGGATA+TGG - chr1_2:27708795-27708814 None:intergenic 45.0%
AAGGTGAGTCACAAGAAGGA+AGG - chr1_2:27708813-27708832 None:intergenic 45.0%
!!! AATGATATTTTTTATTTTTT+TGG + chr1_2:27704169-27704188 Msa0065470:intron 5.0%
ATACAAGCAGCAAGGTCCCA+CGG + chr1_2:27702892-27702911 Msa0065470:CDS 50.0%
GAGGGTTAACCAACCTGAGT+TGG - chr1_2:27703148-27703167 None:intergenic 50.0%
ATGGAGCCAAACCCACTTAG+TGG + chr1_2:27703847-27703866 Msa0065470:intron 50.0%
TGGAGCCAAACCCACTTAGT+GGG + chr1_2:27703848-27703867 Msa0065470:intron 50.0%
TACTCAGATCAGCATGTGGG+TGG + chr1_2:27703904-27703923 Msa0065470:intron 50.0%
! TTGCGAAGGACGTTTTGTGG+CGG + chr1_2:27704132-27704151 Msa0065470:intron 50.0%
!!! AGGACGTTTTGTGGCGGATA+TGG + chr1_2:27704138-27704157 Msa0065470:intron 50.0%
!!! ACGTTTTGTGGCGGATATGG+TGG + chr1_2:27704141-27704160 Msa0065470:intron 50.0%
TGTTTGCAGATTGGGGACCA+TGG - chr1_2:27704202-27704221 None:intergenic 50.0%
TCGTCTTGCCATGCTTCCTT+TGG + chr1_2:27704829-27704848 Msa0065470:CDS 50.0%
CCTCCAAGTCTTCCAACTAG+AGG - chr1_2:27704925-27704944 None:intergenic 50.0%
CCTCTAGTTGGAAGACTTGG+AGG + chr1_2:27704922-27704941 Msa0065470:intron 50.0%
CACTGTTGTGAGTCCCACAT+TGG + chr1_2:27705285-27705304 Msa0065470:intron 50.0%
CCACCTGTTATTGGACTGCT+CGG + chr1_2:27705606-27705625 Msa0065470:intron 50.0%
CACCTGTTATTGGACTGCTC+GGG + chr1_2:27705607-27705626 Msa0065470:intron 50.0%
GTGTGTTGAGCGTTCCACAT+TGG + chr1_2:27705661-27705680 Msa0065470:intron 50.0%
AACTGGTGCACGTCACTAAC+AGG + chr1_2:27705710-27705729 Msa0065470:intron 50.0%
CTCTTCTTCTTGAGGGGCTA+AGG + chr1_2:27706077-27706096 Msa0065470:intron 50.0%
TCTTCTTGAGGGGCTAAGGT+AGG + chr1_2:27706081-27706100 Msa0065470:intron 50.0%
AAGATCCTACGAGCTAGCAC+TGG - chr1_2:27706130-27706149 None:intergenic 50.0%
ACTGGAGTGAAGTCGAAGCA+CGG - chr1_2:27706180-27706199 None:intergenic 50.0%
ATCGAGATCCTGCGTAGGAT+CGG - chr1_2:27706433-27706452 None:intergenic 50.0%
GCTCAATCTCTCTCACCTGA+AGG - chr1_2:27706757-27706776 None:intergenic 50.0%
TCAGGTGAGAGAGATTGAGC+AGG + chr1_2:27706757-27706776 Msa0065470:intron 50.0%
GTGAGAGAGATTGAGCAGGA+AGG + chr1_2:27706761-27706780 Msa0065470:CDS 50.0%
!! CTTCTGGGCTGTTTCTGGTT+CGG - chr1_2:27706792-27706811 None:intergenic 50.0%
AATTGACGGGGTTGGACGTT+TGG + chr1_2:27707308-27707327 Msa0065470:intron 50.0%
TGGCCAAAATATTAGGGGGG+CGG - chr1_2:27707524-27707543 None:intergenic 50.0%
! CGCCACTACATGTTTCTGCT+AGG + chr1_2:27707816-27707835 Msa0065470:intron 50.0%
GAGGGCGAGACAAAGACAAT+TGG + chr1_2:27708517-27708536 Msa0065470:CDS 50.0%
GAGAGACAGAGAGGATGAGA+CGG + chr1_2:27708762-27708781 Msa0065470:three_prime_UTR 50.0%
AGACGGAGAGGATCCATATC+CGG + chr1_2:27708779-27708798 Msa0065470:three_prime_UTR 50.0%
GCTGAAGGTGAGTCACAAGA+AGG - chr1_2:27708817-27708836 None:intergenic 50.0%
AGGTCCCACGGCGTGAATAT+AGG + chr1_2:27702904-27702923 Msa0065470:CDS 55.0%
! GTGGGTTTGGCTCCATTCCA+TGG - chr1_2:27703843-27703862 None:intergenic 55.0%
TATCGGTCATGGTGGCACCA+TGG + chr1_2:27704067-27704086 Msa0065470:intron 55.0%
TTCGCCACAGCAATTCGCCA+TGG - chr1_2:27704087-27704106 None:intergenic 55.0%
TTGCAGATTGGGGACCATGG+CGG - chr1_2:27704199-27704218 None:intergenic 55.0%
TCCTTTGAGCCACCTGTTGC+TGG + chr1_2:27705407-27705426 Msa0065470:intron 55.0%
TCCAGCAACAGGTGGCTCAA+AGG - chr1_2:27705411-27705430 None:intergenic 55.0%
CCGAGCAGTCCAATAACAGG+TGG - chr1_2:27705609-27705628 None:intergenic 55.0%
GACCCGAGCAGTCCAATAAC+AGG - chr1_2:27705612-27705631 None:intergenic 55.0%
TCAAACTCTCGGGTGGACCA+AGG + chr1_2:27706019-27706038 Msa0065470:intron 55.0%
! TACGAGCTAGCACTGGATCC+TGG - chr1_2:27706123-27706142 None:intergenic 55.0%
AGGATCCAGTGCTAGCTCGT+AGG + chr1_2:27706122-27706141 Msa0065470:intron 55.0%
TCAGGATCGAGATCCTGCGT+AGG - chr1_2:27706438-27706457 None:intergenic 55.0%
AGGATCTCGATCCTGAGTCC+TGG + chr1_2:27706442-27706461 Msa0065470:intron 55.0%
GTCTGCAACCAAATGCCCGA+AGG + chr1_2:27706500-27706519 Msa0065470:intron 55.0%
AATTGGGGCCTTCGGGCATT+TGG - chr1_2:27706511-27706530 None:intergenic 55.0%
CCATAGCAGGGTCCAGGAAA+GGG - chr1_2:27706651-27706670 None:intergenic 55.0%
AGACACGAAGCAGACAGCTG+CGG + chr1_2:27706814-27706833 Msa0065470:CDS 55.0%
TGGCGGCATCGTTCAAGGAA+CGG - chr1_2:27706868-27706887 None:intergenic 55.0%
AACGATGCCGCCAGCTTGAA+AGG + chr1_2:27706875-27706894 Msa0065470:CDS 55.0%
AACCACAGCCATATCAGCCG+AGG + chr1_2:27707094-27707113 Msa0065470:intron 55.0%
ATCCTCGGCTGATATGGCTG+TGG - chr1_2:27707099-27707118 None:intergenic 55.0%
GCTTATAGGCAGTGGCTGAG+AGG + chr1_2:27707165-27707184 Msa0065470:intron 55.0%
! TGCCCGCCCCCCTAATATTT+TGG + chr1_2:27707518-27707537 Msa0065470:intron 55.0%
GGCCAAAATATTAGGGGGGC+GGG - chr1_2:27707523-27707542 None:intergenic 55.0%
CAATGGCGACTCAACCAGCT+GGG + chr1_2:27708016-27708035 Msa0065470:intron 55.0%
AATGGCGACTCAACCAGCTG+GGG + chr1_2:27708017-27708036 Msa0065470:intron 55.0%
ACAGAGAGGATGAGACGGAG+AGG + chr1_2:27708767-27708786 Msa0065470:three_prime_UTR 55.0%
GGCACCATGGCGAATTGCTG+TGG + chr1_2:27704080-27704099 Msa0065470:intron 60.0%
CTGCCACGGCCAATTTGCGA+AGG + chr1_2:27704118-27704137 Msa0065470:intron 60.0%
CGTCCTTCGCAAATTGGCCG+TGG - chr1_2:27704124-27704143 None:intergenic 60.0%
CCACCTGTTGCTGGACCAGT+CGG + chr1_2:27705416-27705435 Msa0065470:intron 60.0%
! GAACCGACTGGTCCAGCAAC+AGG - chr1_2:27705422-27705441 None:intergenic 60.0%
ATCCTGGCTACAGCCACCCT+GGG - chr1_2:27706107-27706126 None:intergenic 60.0%
! TAGGATCGGCTGGCCGGTTA+AGG - chr1_2:27706419-27706438 None:intergenic 60.0%
AGATCCTGCGTAGGATCGGC+TGG - chr1_2:27706429-27706448 None:intergenic 60.0%
CCCTTTCCTGGACCCTGCTA+TGG + chr1_2:27706648-27706667 Msa0065470:intron 60.0%
GCCATAGCAGGGTCCAGGAA+AGG - chr1_2:27706652-27706671 None:intergenic 60.0%
TTCCTGGACCCTGCTATGGC+AGG + chr1_2:27706652-27706671 Msa0065470:intron 60.0%
ATCCTGCCATAGCAGGGTCC+AGG - chr1_2:27706657-27706676 None:intergenic 60.0%
CAAGCTGGCGGCATCGTTCA+AGG - chr1_2:27706873-27706892 None:intergenic 60.0%
GCAATGGCGACTCAACCAGC+TGG + chr1_2:27708015-27708034 Msa0065470:intron 60.0%
ATGGCGACTCAACCAGCTGG+GGG + chr1_2:27708018-27708037 Msa0065470:intron 60.0%
! CCGACTGGTCCAGCAACAGG+TGG - chr1_2:27705419-27705438 None:intergenic 65.0%
TGAGGGGCTAAGGTAGGCCC+AGG + chr1_2:27706087-27706106 Msa0065470:intron 65.0%
GAGGGGCTAAGGTAGGCCCA+GGG + chr1_2:27706088-27706107 Msa0065470:intron 65.0%
GATCCTGGCTACAGCCACCC+TGG - chr1_2:27706108-27706127 None:intergenic 65.0%
GAAGCACGGTTGACGTGCCG+TGG - chr1_2:27706166-27706185 None:intergenic 65.0%
AATGGGTCCCGGCCCTTTCC+TGG + chr1_2:27706636-27706655 Msa0065470:intron 65.0%
AGCAGGGTCCAGGAAAGGGC+CGG - chr1_2:27706647-27706666 None:intergenic 65.0%
GGGCTAAGGTAGGCCCAGGG+TGG + chr1_2:27706091-27706110 Msa0065470:intron 70.0%
CCTGCGTAGGATCGGCTGGC+CGG - chr1_2:27706425-27706444 None:intergenic 70.0%
GCAGGGTCCAGGAAAGGGCC+GGG - chr1_2:27706646-27706665 None:intergenic 70.0%
GGCCCAGGGTGGCTGTAGCC+AGG + chr1_2:27706102-27706121 Msa0065470:intron 75.0%
CCGGCCAGCCGATCCTACGC+AGG + chr1_2:27706422-27706441 Msa0065470:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 27702886 27709013 27702886 ID=Msa0065470;Name=Msa0065470
chr1_2 mRNA 27702886 27709013 27702886 ID=Msa0065470-mRNA-1;Parent=Msa0065470;Name=Msa0065470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.75|1|1|1|4|442|186
chr1_2 exon 27702886 27703153 27702886 ID=Msa0065470-mRNA-1:exon:9592;Parent=Msa0065470-mRNA-1
chr1_2 exon 27704795 27704865 27704795 ID=Msa0065470-mRNA-1:exon:9593;Parent=Msa0065470-mRNA-1
chr1_2 exon 27706761 27706896 27706761 ID=Msa0065470-mRNA-1:exon:9594;Parent=Msa0065470-mRNA-1
chr1_2 exon 27708486 27709013 27708486 ID=Msa0065470-mRNA-1:exon:9595;Parent=Msa0065470-mRNA-1
chr1_2 CDS 27702886 27703153 27702886 ID=Msa0065470-mRNA-1:cds;Parent=Msa0065470-mRNA-1
chr1_2 CDS 27704795 27704865 27704795 ID=Msa0065470-mRNA-1:cds;Parent=Msa0065470-mRNA-1
chr1_2 CDS 27706761 27706896 27706761 ID=Msa0065470-mRNA-1:cds;Parent=Msa0065470-mRNA-1
chr1_2 CDS 27708486 27708571 27708486 ID=Msa0065470-mRNA-1:cds;Parent=Msa0065470-mRNA-1
chr1_2 three_prime_UTR 27708572 27709013 27708572 ID=Msa0065470-mRNA-1:three_prime_utr;Parent=Msa0065470-mRNA-1
Gene Sequence

>Msa0065470

TTGACAATACAAGCAGCAAGGTCCCACGGCGTGAATATAGGAAATAGAAATCAAATCAATGTATCTAAAAAGTTTCAACTTTTTATTCCTTCAATCATAACAAAACAAATGGAGGTACAACAATGGTGGAAGCTTAGATTCTCCTTCAAGAACGCAACCATTCTTGTCTGTTTCCTCAATATCATCACTGCTATCTTCCTTCTTCATGGCTTCTTCTTCACTTCTCCTTACACCCGCACCAAATTCTACTCTGAAAACACCAACTCAGCTGAACTCAGTTACATAAAGGAATCTGAAGAGATTCGTCTTGCCATGCTTCCTTTGGAGCTAATAAAAAGAGTGAGAGAGATTGAGCAGGAAGGGTACACCGAACCAGAAACAGCCCAGAAGAAAGACACGAAGCAGACAGCTGCGGTTGATTTGTCTAAAAGGCTAAAGGATTTCCGTTCCTTGAACGATGCCGCCAGCTTGAAAGCTTTGGAGGAATGGCGTAAAAGGAAAATCGAGAGGGCGAGACAAAGACAATTGGAGAAAAATGGAACAACCTCCTCTCAATCTTGA
Protein sequence

>Msa0065470

LTIQAARSHGVNIGNRNQINVSKKFQLFIPSIITKQMEVQQWWKLRFSFKNATILVCFLNIITAIFLLHGFFFTSPYTRTKFYSENTNSAELSYIKESEEIRLAMLPLELIKRVREIEQEGYTEPETAQKKDTKQTAAVDLSKRLKDFRSLNDAASLKALEEWRKRKIERARQRQLEKNGTTSSQS*