AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359630 MtrunA17_Chr1g0150071 98.611 360 3 2 1 360 1 358 0.0 730
Msa1359630 MtrunA17_Chr3g0136811 78.552 359 75 2 1 358 1 358 0.0 592
Msa1359630 MtrunA17_Chr4g0001761 69.101 356 103 2 1 356 1 349 0.0 524
Msa1359630 MtrunA17_Chr4g0007811 61.842 152 34 1 40 191 54 181 1.22e-60 194
Msa1359630 MtrunA17_Chr5g0407161 29.971 347 173 9 22 358 84 370 4.76e-42 150
Msa1359630 MtrunA17_Chr3g0138281 31.471 340 165 10 10 339 70 351 1.89e-40 146
Msa1359630 MtrunA17_Chr2g0299981 34.708 291 145 9 24 293 221 487 1.51e-36 139
Msa1359630 MtrunA17_Chr1g0194191 30.982 326 151 10 21 327 77 347 3.13e-35 132
Msa1359630 MtrunA17_Chr3g0136711 30.816 331 157 12 19 343 30 294 3.19e-35 130
Msa1359630 MtrunA17_Chr5g0435721 33.577 274 135 7 23 291 192 423 4.93e-35 134
Msa1359630 MtrunA17_Chr1g0150451 30.189 318 150 11 18 329 72 323 6.92e-34 128
Msa1359630 MtrunA17_Chr2g0293811 32.168 286 133 8 21 291 59 298 9.39e-34 128
Msa1359630 MtrunA17_Chr3g0126511 30.029 343 160 11 18 350 89 361 9.48e-34 128
Msa1359630 MtrunA17_Chr3g0144111 34.146 205 122 5 143 345 52 245 1.03e-33 125
Msa1359630 MtrunA17_Chr4g0065141 36.813 182 106 2 158 339 184 356 3.48e-33 127
Msa1359630 MtrunA17_Chr1g0212961 30.864 324 149 12 19 336 91 345 1.04e-31 122
Msa1359630 MtrunA17_Chr5g0396731 32.673 303 128 9 7 291 58 302 6.93e-31 120
Msa1359630 MtrunA17_Chr5g0430481 31.884 276 116 9 24 289 124 337 2.38e-30 119
Msa1359630 MtrunA17_Chr3g0112291 32.616 279 133 10 23 291 92 325 3.61e-30 119
Msa1359630 MtrunA17_Chr1g0171571 30.650 323 158 13 22 336 386 650 3.75e-30 121
Msa1359630 MtrunA17_Chr3g0105371 29.968 317 147 13 24 330 88 339 4.09e-30 117
Msa1359630 MtrunA17_Chr4g0070871 31.973 294 134 11 24 296 207 455 4.22e-30 120
Msa1359630 MtrunA17_Chr3g0127091 29.565 345 178 8 22 342 59 362 4.37e-30 118
Msa1359630 MtrunA17_Chr4g0050381 27.987 318 152 10 22 330 28 277 4.38e-30 116
Msa1359630 MtrunA17_Chr6g0483411 27.778 324 158 8 30 331 51 320 4.45e-30 117
Msa1359630 MtrunA17_Chr3g0105351 30.877 285 131 10 8 286 50 274 1.39e-28 113
Msa1359630 MtrunA17_Chr2g0279151 27.358 318 154 10 22 330 32 281 1.00e-26 107
Msa1359630 MtrunA17_Chr5g0426141 29.749 279 126 11 21 289 32 250 1.84e-25 103
Msa1359630 MtrunA17_Chr1g0150781 28.296 311 133 9 24 296 240 498 2.27e-25 107
Msa1359630 MtrunA17_Chr8g0389921 29.178 353 169 14 19 340 144 446 2.59e-25 106
Msa1359630 MtrunA17_Chr3g0115851 30.108 279 125 11 21 289 32 250 2.60e-25 103
Msa1359630 MtrunA17_Chr3g0135961 30.612 245 128 7 52 293 286 491 6.23e-24 102
Msa1359630 MtrunA17_Chr1g0158781 29.607 331 162 11 22 336 111 386 2.03e-22 97.4
Msa1359630 MtrunA17_Chr8g0360351 26.959 319 154 12 21 329 32 281 1.80e-21 92.8
Msa1359630 MtrunA17_Chr4g0051661 25.000 332 165 12 13 329 135 397 7.38e-21 92.8
Msa1359630 MtrunA17_Chr4g0068971 46.739 92 46 1 200 291 110 198 5.04e-20 88.6
Msa1359630 MtrunA17_Chr2g0317021 32.203 177 94 6 160 330 177 333 2.34e-18 85.1
Msa1359630 MtrunA17_Chr3g0089721 26.367 311 137 11 35 303 52 312 6.86e-18 84.0
Msa1359630 MtrunA17_Chr1g0151781 28.929 280 145 10 28 287 43 288 7.78e-18 83.6
Msa1359630 MtrunA17_Chr1g0213351 25.641 273 119 6 51 288 79 302 1.56e-17 83.2
Msa1359630 MtrunA17_Chr3g0089711 25.962 312 139 11 34 303 51 312 2.75e-17 82.0
Msa1359630 MtrunA17_Chr8g0371321 24.658 292 134 11 33 288 60 301 1.08e-16 80.9
Msa1359630 MtrunA17_Chr7g0249421 28.956 297 156 9 26 287 68 344 2.32e-16 80.1
Msa1359630 MtrunA17_Chr2g0294291 24.151 265 136 6 51 289 74 299 1.60e-15 77.0
Msa1359630 MtrunA17_Chr1g0211251 25.461 271 122 11 51 288 80 303 2.59e-15 76.6
Msa1359630 MtrunA17_Chr7g0256751 26.797 306 136 12 52 322 69 321 2.85e-15 76.6
Msa1359630 MtrunA17_Chr1g0181901 25.095 263 131 9 51 287 75 297 4.69e-15 75.9
Msa1359630 MtrunA17_Chr7g0263281 25.843 267 124 9 51 287 70 292 5.20e-15 75.5
Msa1359630 MtrunA17_Chr1g0207571 26.866 268 126 7 49 287 58 284 7.86e-15 75.1
Msa1359630 MtrunA17_Chr7g0272061 26.459 257 142 7 52 287 91 321 2.31e-14 73.6
Msa1359630 MtrunA17_Chr7g0250061 24.275 276 119 10 51 288 75 298 7.82e-14 72.0
Msa1359630 MtrunA17_Chr7g0256771 26.217 267 123 8 52 288 70 292 9.46e-14 71.2
Msa1359630 MtrunA17_Chr2g0324061 28.975 283 154 12 28 287 65 323 1.21e-13 72.0
Msa1359630 MtrunA17_Chr7g0221691 35.897 156 72 7 151 287 223 369 1.30e-13 71.6
Msa1359630 MtrunA17_Chr2g0295401 28.016 257 125 10 54 287 94 313 1.60e-13 70.9
Msa1359630 MtrunA17_Chr3g0133801 26.848 257 117 11 48 288 62 263 2.25e-13 70.9
Msa1359630 MtrunA17_Chr4g0067711 27.626 257 130 9 52 287 91 312 2.70e-13 70.5
Msa1359630 MtrunA17_Chr1g0153671 27.734 256 114 11 49 288 62 262 1.53e-12 68.6
Msa1359630 MtrunA17_Chr4g0022171 27.402 281 162 9 28 287 71 330 2.13e-12 68.2
Msa1359630 MtrunA17_Chr3g0089691 29.189 185 81 5 160 303 51 226 8.27e-12 65.5
Msa1359630 MtrunA17_Chr1g0192421 30.263 152 80 4 154 287 167 310 8.69e-12 65.9
Msa1359630 MtrunA17_Chr7g0243571 25.424 295 153 10 26 287 64 324 3.91e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359630 AT4G31860.1 72.113 355 97 1 1 353 1 355 0.0 546
Msa1359630 AT2G25070.1 73.746 339 89 0 1 339 1 339 0.0 540
Msa1359630 AT2G25070.2 73.746 339 89 0 1 339 1 339 0.0 540
Msa1359630 AT4G31860.3 75.601 291 71 0 1 291 1 291 4.31e-171 478
Msa1359630 AT4G31860.2 76.364 275 65 0 1 275 1 275 3.49e-161 452
Msa1359630 AT2G33700.1 31.230 317 152 7 23 329 84 344 5.70e-39 142
Msa1359630 AT3G51470.2 28.902 346 173 7 22 358 27 308 9.27e-39 140
Msa1359630 AT3G51470.1 28.902 346 173 7 22 358 71 352 1.53e-38 141
Msa1359630 AT2G25620.1 30.631 333 156 9 23 339 89 362 7.57e-38 140
Msa1359630 AT2G25620.2 30.631 333 156 9 23 339 89 362 7.57e-38 140
Msa1359630 AT5G10740.1 31.861 317 146 10 18 329 28 279 2.83e-37 137
Msa1359630 AT5G10740.2 31.861 317 146 10 18 329 28 279 2.83e-37 137
Msa1359630 AT5G24940.1 31.230 317 148 11 18 329 28 279 1.74e-36 137
Msa1359630 AT1G07430.1 34.615 286 123 10 23 291 120 358 6.38e-36 135
Msa1359630 AT2G29380.1 33.003 303 141 11 6 291 57 314 1.87e-34 130
Msa1359630 AT1G43900.1 33.121 314 139 10 22 330 122 369 2.25e-34 130
Msa1359630 AT4G27800.1 30.000 350 171 11 22 343 58 361 7.02e-34 129
Msa1359630 AT4G27800.2 31.148 305 150 8 22 302 58 326 1.25e-33 127
Msa1359630 AT4G31750.1 30.189 318 150 12 18 329 28 279 3.02e-33 125
Msa1359630 AT4G31750.3 30.189 318 150 12 18 329 28 279 3.02e-33 125
Msa1359630 AT4G27800.3 30.921 304 150 8 22 301 58 325 3.11e-33 126
Msa1359630 AT4G31750.2 30.189 318 150 12 18 329 28 279 3.63e-33 125
Msa1359630 AT5G53140.1 29.714 350 166 12 18 358 96 374 3.79e-33 128
Msa1359630 AT5G53140.2 29.714 350 166 12 18 358 96 374 3.79e-33 128
Msa1359630 AT1G48040.1 30.938 320 165 10 33 343 88 360 3.89e-33 127
Msa1359630 AT3G11410.1 33.452 281 145 9 19 291 100 346 7.82e-33 126
Msa1359630 AT1G67820.2 32.971 276 118 9 24 291 85 301 3.50e-31 122
Msa1359630 AT5G59220.1 33.113 302 135 12 3 291 99 346 5.65e-31 122
Msa1359630 AT1G67820.1 32.971 276 118 9 24 291 121 337 6.82e-31 122
Msa1359630 AT3G62260.1 29.210 291 136 6 21 291 75 315 1.68e-30 120
Msa1359630 AT3G62260.2 29.210 291 136 6 21 291 76 316 1.82e-30 120
Msa1359630 AT5G51760.2 29.722 360 169 11 15 334 71 386 2.16e-30 119
Msa1359630 AT5G51760.1 29.722 360 169 11 15 334 101 416 3.34e-30 119
Msa1359630 AT3G62260.3 30.797 276 121 6 36 291 1 226 3.96e-30 117
Msa1359630 AT5G57050.1 28.529 333 156 11 24 329 113 390 9.29e-30 119
Msa1359630 AT5G57050.2 28.529 333 156 11 24 329 73 350 1.19e-29 117
Msa1359630 AT1G07160.1 29.819 332 159 12 8 329 109 376 1.56e-29 117
Msa1359630 AT4G26080.1 30.508 295 139 8 24 300 129 375 1.20e-28 115
Msa1359630 AT1G72770.4 30.548 347 167 12 24 330 190 502 1.76e-28 116
Msa1359630 AT1G72770.1 30.548 347 167 12 24 330 190 502 1.76e-28 116
Msa1359630 AT1G72770.3 30.548 347 167 12 24 330 190 502 1.76e-28 116
Msa1359630 AT2G30020.1 31.529 314 149 12 24 329 140 395 1.99e-28 114
Msa1359630 AT1G17550.1 30.137 292 153 9 24 292 189 452 5.32e-28 114
Msa1359630 AT1G17550.2 30.137 292 153 9 24 292 189 452 5.32e-28 114
Msa1359630 AT2G40860.4 29.073 313 157 12 31 336 302 556 1.94e-27 113
Msa1359630 AT2G40860.1 29.073 313 157 12 31 336 400 654 2.45e-27 113
Msa1359630 AT2G40180.1 28.527 319 155 12 24 330 129 386 8.35e-27 110
Msa1359630 AT1G18030.1 29.538 325 151 12 30 331 81 350 1.06e-26 108
Msa1359630 AT3G17250.1 26.935 323 178 9 32 343 127 402 2.00e-25 106
Msa1359630 AT2G40860.2 29.057 265 132 8 31 288 400 615 1.93e-24 105
Msa1359630 AT1G78200.1 27.044 318 158 11 22 330 31 283 9.10e-24 99.8
Msa1359630 AT1G78200.3 27.044 318 158 11 22 330 31 283 9.10e-24 99.8
Msa1359630 AT1G78200.2 27.044 318 158 11 22 330 31 283 9.10e-24 99.8
Msa1359630 AT1G34750.2 27.703 296 144 12 5 289 14 250 3.14e-23 98.2
Msa1359630 AT1G34750.1 27.703 296 144 12 5 289 14 250 3.14e-23 98.2
Msa1359630 AT1G34750.3 27.703 296 144 12 5 289 14 250 3.14e-23 98.2
Msa1359630 AT1G18030.2 28.832 274 115 9 30 277 81 300 8.15e-23 97.4
Msa1359630 AT1G78200.5 26.403 303 150 9 36 330 1 238 4.63e-22 94.0
Msa1359630 AT1G78200.4 26.403 303 150 9 36 330 1 238 4.63e-22 94.0
Msa1359630 AT3G12620.2 26.950 282 136 6 34 287 65 304 8.29e-22 95.9
Msa1359630 AT3G12620.1 26.950 282 136 6 34 287 65 304 8.29e-22 95.9
Msa1359630 AT1G22280.1 26.730 318 156 13 22 330 32 281 1.62e-21 93.6
Msa1359630 AT5G59220.2 33.878 245 104 10 3 234 99 298 2.09e-21 93.6
Msa1359630 AT4G28400.3 32.377 244 98 9 52 288 45 228 2.65e-21 92.4
Msa1359630 AT4G28400.1 32.377 244 98 9 52 288 67 250 4.90e-21 92.0
Msa1359630 AT2G20630.1 26.316 285 136 8 52 330 63 279 6.62e-21 91.7
Msa1359630 AT3G15260.2 27.241 290 137 11 47 330 68 289 6.84e-21 91.7
Msa1359630 AT3G15260.1 27.241 290 137 11 47 330 68 289 6.84e-21 91.7
Msa1359630 AT2G20630.2 26.740 273 128 8 52 311 63 276 3.30e-20 90.1
Msa1359630 AT1G34750.4 28.014 282 133 12 5 275 14 236 6.65e-20 88.2
Msa1359630 AT1G22280.3 26.398 322 158 14 22 330 32 287 1.03e-19 88.6
Msa1359630 AT3G55050.1 25.651 269 122 6 51 287 83 305 3.73e-19 88.2
Msa1359630 AT3G55050.2 25.651 269 122 6 51 287 83 305 3.73e-19 88.2
Msa1359630 AT4G28400.2 31.967 244 98 10 52 287 67 250 1.41e-18 84.7
Msa1359630 AT2G40860.3 28.980 245 118 8 31 268 400 595 6.75e-18 85.5
Msa1359630 AT2G34740.1 23.509 285 142 11 52 329 119 334 1.30e-17 83.2
Msa1359630 AT5G02760.1 26.054 261 129 6 51 287 71 291 3.20e-17 82.4
Msa1359630 AT1G16220.1 28.421 285 166 9 26 287 67 336 4.41e-17 82.8
Msa1359630 AT4G03415.1 29.181 281 158 9 28 287 72 332 1.66e-16 80.9
Msa1359630 AT4G03415.3 29.181 281 158 9 28 287 72 332 1.66e-16 80.9
Msa1359630 AT4G03415.2 29.181 281 158 9 28 287 72 332 1.66e-16 80.9
Msa1359630 AT4G33920.1 26.909 275 120 8 48 287 57 285 3.40e-16 79.7
Msa1359630 AT4G38520.2 25.362 276 116 10 51 288 80 303 4.67e-16 79.3
Msa1359630 AT4G38520.1 25.362 276 116 10 51 288 80 303 4.67e-16 79.3
Msa1359630 AT3G02750.2 36.129 155 73 4 151 287 207 353 1.28e-15 78.2
Msa1359630 AT3G02750.1 36.129 155 73 4 151 287 207 353 1.28e-15 78.2
Msa1359630 AT1G79630.1 28.754 313 149 12 26 287 70 359 3.58e-15 77.0
Msa1359630 AT1G79630.8 28.754 313 149 12 26 287 66 355 3.86e-15 77.0
Msa1359630 AT2G34740.3 24.675 231 107 9 52 275 115 285 5.86e-15 75.1
Msa1359630 AT1G79630.6 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa1359630 AT1G79630.3 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa1359630 AT1G79630.4 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa1359630 AT1G79630.5 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa1359630 AT5G66080.1 24.354 271 125 11 51 288 81 304 1.09e-14 75.1
Msa1359630 AT1G79630.2 34.194 155 76 4 151 287 143 289 1.20e-14 75.1
Msa1359630 AT1G79630.7 34.194 155 76 4 151 287 143 289 1.20e-14 75.1
Msa1359630 AT5G36250.1 28.328 293 161 10 26 287 70 344 1.36e-14 75.1
Msa1359630 AT3G51370.1 22.378 286 148 7 33 288 60 301 1.46e-14 74.7
Msa1359630 AT3G51370.3 22.378 286 148 7 33 288 60 301 1.46e-14 74.7
Msa1359630 AT1G47380.1 23.446 354 190 15 9 342 17 309 3.84e-14 73.6
Msa1359630 AT3G16800.4 33.766 154 75 5 154 288 69 214 4.59e-14 71.6
Msa1359630 AT3G16800.6 33.766 154 75 5 154 288 69 214 4.59e-14 71.6
Msa1359630 AT3G16800.2 33.766 154 75 5 154 288 164 309 6.38e-14 72.4
Msa1359630 AT3G16800.1 33.766 154 75 5 154 288 164 309 6.38e-14 72.4
Msa1359630 AT3G16800.3 33.766 154 75 5 154 288 164 309 6.38e-14 72.4
Msa1359630 AT1G03590.1 28.223 287 150 11 28 287 65 322 1.73e-13 71.6
Msa1359630 AT5G27930.1 30.323 155 82 4 151 287 168 314 5.43e-13 69.7
Msa1359630 AT5G27930.2 30.323 155 82 4 151 287 168 314 5.43e-13 69.7
Msa1359630 AT3G05640.2 30.323 155 82 5 151 287 163 309 1.84e-12 68.2
Msa1359630 AT3G05640.1 30.323 155 82 5 151 287 163 309 1.84e-12 68.2
Msa1359630 AT3G05640.3 30.323 155 82 5 151 287 163 309 1.84e-12 68.2
Msa1359630 AT3G63340.6 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa1359630 AT3G63340.3 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa1359630 AT3G63340.10 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa1359630 AT3G63340.4 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa1359630 AT3G63340.8 28.916 249 117 10 159 355 232 472 2.21e-12 68.9
Msa1359630 AT3G63340.11 28.916 249 117 10 159 355 232 472 2.60e-12 68.6
Msa1359630 AT3G63340.7 28.916 249 117 10 159 355 232 472 2.62e-12 68.9
Msa1359630 AT3G63340.5 28.916 249 117 10 159 355 232 472 2.64e-12 68.6
Msa1359630 AT3G63340.1 28.916 249 117 10 159 355 232 472 2.64e-12 68.6
Msa1359630 AT3G63340.12 28.916 249 117 10 159 355 232 472 3.57e-12 67.8
Msa1359630 AT4G32950.1 30.723 166 89 5 155 302 134 291 4.96e-12 66.6
Msa1359630 AT4G08260.1 30.899 178 98 7 155 329 56 211 1.10e-11 63.9
Msa1359630 AT5G01700.1 32.911 158 81 5 147 287 99 248 1.23e-11 65.5
Msa1359630 AT5G01700.2 32.911 158 81 5 147 287 148 297 2.33e-11 65.1
Msa1359630 AT4G33920.3 29.091 165 76 5 158 287 14 172 2.37e-11 63.9
Msa1359630 AT3G63340.2 31.609 174 102 7 191 355 340 505 2.95e-11 65.5
Msa1359630 AT4G33920.2 29.091 165 76 5 158 287 44 202 3.48e-11 63.9
Msa1359630 AT5G66080.2 25.843 178 92 7 141 288 33 200 6.85e-11 62.8
Msa1359630 AT3G51370.2 25.786 159 84 4 160 288 62 216 8.66e-11 62.8

Find 83 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTATTATCATTGCTTC+TGG 0.154103 tig0016715:-372823 None:intergenic
CTACCAATTGTTGGCTTGAT+AGG 0.213993 tig0016715:-374226 None:intergenic
CCGGTGTTTGGCGCCATCTT+TGG 0.215436 tig0016715:+375210 Msa1359630:CDS
GTCTTAGGTGATAAGGTAAA+AGG 0.236931 tig0016715:+372765 Msa1359630:CDS
ATTCATGCAGGACGAATTAA+TGG 0.284463 tig0016715:+373464 Msa1359630:CDS
GAAAATGACAATCTTAGATA+TGG 0.340077 tig0016715:+371769 Msa1359630:CDS
TTAAATCTTGCAAGAGCTAT+AGG 0.342994 tig0016715:+373491 Msa1359630:CDS
TCCCAGAAGCAATGATAATA+AGG 0.343732 tig0016715:+372821 Msa1359630:CDS
TCCTTATTATCATTGCTTCT+GGG 0.356241 tig0016715:-372822 None:intergenic
TCCTTCTCAATCACAAGCTC+AGG 0.383236 tig0016715:-373416 None:intergenic
AGAGAAAGAGGGAGAGTAAG+AGG 0.394444 tig0016715:-370994 None:intergenic
GACTTTGATGGACCAACTTC+AGG 0.394479 tig0016715:+372996 Msa1359630:CDS
CGATAACATGACAATGATAT+TGG 0.399156 tig0016715:+375249 Msa1359630:CDS
TGCCAAGCACCTTCACCAAC+AGG 0.407215 tig0016715:+372465 Msa1359630:CDS
TGGAGGGAATTAGCAGTCTT+AGG 0.418225 tig0016715:+372750 Msa1359630:CDS
AAACTTACAATGTTTATGTC+TGG 0.418978 tig0016715:-373868 None:intergenic
TAGTTGGTACAGAGAGAAAG+AGG 0.419796 tig0016715:-371006 None:intergenic
CTTCAACTGTTCTCCAATGT+TGG 0.431839 tig0016715:-375355 None:intergenic
GTACAAAATCTACCAATTGT+TGG 0.434248 tig0016715:-374235 None:intergenic
TACAATGTTTATGTCTGGAT+TGG 0.435988 tig0016715:-373863 None:intergenic
GGGCCTCATTCAGACTTTGA+TGG 0.437338 tig0016715:+372984 Msa1359630:CDS
CAAAGGCCCAATCATCACTT+TGG 0.437500 tig0016715:-372845 None:intergenic
CCATCTTTGGCTGTTGGTGA+TGG 0.439337 tig0016715:+375223 Msa1359630:CDS
GATAAGGTAAAAGGGTTCAA+TGG 0.446026 tig0016715:+372774 Msa1359630:CDS
TAAGGACCAAAGTGATGATT+GGG 0.447461 tig0016715:+372839 Msa1359630:CDS
ATTCACGCTGCGTAATATCT+AGG 0.452068 tig0016715:+373078 Msa1359630:CDS
ATAAGGACCAAAGTGATGAT+TGG 0.459298 tig0016715:+372838 Msa1359630:CDS
AATGTTTATGTCTGGATTGG+CGG 0.464448 tig0016715:-373860 None:intergenic
CGTAATATCTAGGAATGGTC+AGG 0.468140 tig0016715:+373088 Msa1359630:CDS
TTTAATTCAGATATAGCAAT+GGG 0.469490 tig0016715:+371700 Msa1359630:intron
TTGCCTATCAAGCCAACAAT+TGG 0.471715 tig0016715:+374223 Msa1359630:CDS
TGATGATTGGGCCTTTGAAA+AGG 0.472066 tig0016715:+372851 Msa1359630:CDS
CACCTGTTGGTGAAGGTGCT+TGG 0.474380 tig0016715:-372467 None:intergenic
TGTACGTCAAGAACTTCTCT+TGG 0.476519 tig0016715:+374253 Msa1359630:CDS
GGGTTCAATGGAATGATTGA+AGG 0.480510 tig0016715:+372786 Msa1359630:CDS
ATTAGCAGTCTTAGGTGATA+AGG 0.484258 tig0016715:+372758 Msa1359630:CDS
AGTTGGTACAGAGAGAAAGA+GGG 0.485887 tig0016715:-371005 None:intergenic
GAATGATTGAAGGATTGATT+CGG 0.488358 tig0016715:+372796 Msa1359630:CDS
GAATACATAGCTGGAGATGT+TGG 0.491063 tig0016715:+372502 Msa1359630:CDS
TTCATGCAGGACGAATTAAT+GGG 0.491284 tig0016715:+373465 Msa1359630:CDS
TGATAGCTTGTGATGGCATA+TGG 0.507088 tig0016715:+374117 Msa1359630:CDS
AAGAGTGCTAGACCGGTGTT+TGG 0.509475 tig0016715:+375198 Msa1359630:CDS
TACATGTATGCGTTTAGTGT+TGG 0.510371 tig0016715:-375396 None:intergenic
AAGGAAAGAATCTATAAAGC+TGG 0.515169 tig0016715:+373434 Msa1359630:CDS
GAAGATGATTGTTCTTGAGC+CGG 0.519349 tig0016715:-375307 None:intergenic
TTCGGTGTATATGATGGTCA+TGG 0.519478 tig0016715:+372329 Msa1359630:CDS
TGAGATGATGCGTGGTCAAA+GGG 0.520080 tig0016715:+372725 Msa1359630:CDS
TGCATCATCTGAACCAACAT+TGG 0.520445 tig0016715:+375342 Msa1359630:CDS
TCTTAGGTGATAAGGTAAAA+GGG 0.520980 tig0016715:+372766 Msa1359630:CDS
TTGGCGCCATCTTTGGCTGT+TGG 0.522338 tig0016715:+375217 Msa1359630:CDS
GCAAGGTTGGCGTGCAACAA+TGG 0.523310 tig0016715:+371804 Msa1359630:CDS
CTTCACTCTTGAGCACCTGT+TGG 0.527508 tig0016715:-372480 None:intergenic
ACAGGAAACTAAACTTTCTG+AGG 0.527738 tig0016715:+375168 Msa1359630:intron
GCTTAGAAAATGCATCTAGT+TGG 0.529060 tig0016715:+375440 Msa1359630:three_prime_UTR
ACTGCAGACAAGTGCACCGC+CGG 0.530448 tig0016715:+375288 Msa1359630:CDS
CCAAAGATGGCGCCAAACAC+CGG 0.530584 tig0016715:-375210 None:intergenic
GGCGGTGCACTTGTCTGCAG+TGG 0.535694 tig0016715:-375286 None:intergenic
CAAGCAGTGCTTCCTGAAGT+TGG 0.536448 tig0016715:-373008 None:intergenic
GCGTGGTCAAAGGGGATGGA+GGG 0.539500 tig0016715:+372734 Msa1359630:CDS
AAGAGTGAAGAATACATAGC+TGG 0.546958 tig0016715:+372493 Msa1359630:CDS
CCATCACCAACAGCCAAAGA+TGG 0.553018 tig0016715:-375223 None:intergenic
TTTGTGAAAGAGTGCTAGAC+CGG 0.555494 tig0016715:+375191 Msa1359630:CDS
TCTTGAGCACCTGTTGGTGA+AGG 0.555714 tig0016715:-372474 None:intergenic
TAAACTCATCTTCGTCATGA+AGG 0.558190 tig0016715:-374091 None:intergenic
TGATGCGTGGTCAAAGGGGA+TGG 0.565060 tig0016715:+372730 Msa1359630:CDS
TGACTAGAAATACCGACACT+TGG 0.567067 tig0016715:-375561 None:intergenic
AGTGTGAAGAAAGAGATAGT+TGG 0.580457 tig0016715:-371022 None:intergenic
GTTTATCATCTATGCAAGGT+TGG 0.584230 tig0016715:+371791 Msa1359630:CDS
TTAATATTCTGCAGGTGACG+TGG 0.584418 tig0016715:+373792 Msa1359630:intron
TGCGTGGTCAAAGGGGATGG+AGG 0.586051 tig0016715:+372733 Msa1359630:CDS
GCATGCGGCGCATCTTGATG+TGG 0.597024 tig0016715:+372289 Msa1359630:intron
ATGAGATGATGCGTGGTCAA+AGG 0.604481 tig0016715:+372724 Msa1359630:CDS
GGTCCATCAAAGTCTGAATG+AGG 0.607139 tig0016715:-372987 None:intergenic
CGCTGCGTAATATCTAGGAA+TGG 0.609929 tig0016715:+373083 Msa1359630:CDS
CAATAAGCGGTTCCAAGTGT+CGG 0.614947 tig0016715:+375549 Msa1359630:three_prime_UTR
ACCTGAGCTTGTGATTGAGA+AGG 0.615530 tig0016715:+373415 Msa1359630:CDS
TATGGTTTATCATCTATGCA+AGG 0.620361 tig0016715:+371787 Msa1359630:CDS
GAAAGAATCTATAAAGCTGG+TGG 0.623293 tig0016715:+373437 Msa1359630:CDS
TTTATAGTGATAGCTTGTGA+TGG 0.644189 tig0016715:+374110 Msa1359630:CDS
GATGATTGTTCTTGAGCCGG+CGG 0.663671 tig0016715:-375304 None:intergenic
GGTGTATATGATGGTCATGG+AGG 0.706196 tig0016715:+372332 Msa1359630:CDS
GAGATGATGCGTGGTCAAAG+GGG 0.732571 tig0016715:+372726 Msa1359630:CDS
AGAATGGATGAGATGATGCG+TGG 0.759110 tig0016715:+372717 Msa1359630:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAATAACATAAC+AGG - tig0016715:373191-373210 None:intergenic 10.0%
!! GAATATTAAAACATATTAAA+TGG - tig0016715:373781-373800 None:intergenic 10.0%
!! TTATTTGAACTTATATAATT+TGG + tig0016715:374391-374410 Msa1359630:intron 10.0%
!!! GATTTTTTTATTACATAGTT+TGG + tig0016715:371623-371642 Msa1359630:intron 15.0%
!!! ATCTTTTTATATTGTAAACA+GGG + tig0016715:372963-372982 Msa1359630:intron 15.0%
!!! TTAGCATTAATTTGTATAAT+TGG + tig0016715:373145-373164 Msa1359630:intron 15.0%
!! AAAAGAATTAAACAAATTCT+AGG - tig0016715:373290-373309 None:intergenic 15.0%
!!! TTTAATTCTTTTTCTTATGT+AGG + tig0016715:373298-373317 Msa1359630:intron 15.0%
!! AGCATACAAAATAAAATAAT+AGG - tig0016715:373643-373662 None:intergenic 15.0%
!!! TTATTTTGTATGCTTTATTT+TGG + tig0016715:373649-373668 Msa1359630:intron 15.0%
!! AAATGACATTTATTAAAATG+GGG - tig0016715:374172-374191 None:intergenic 15.0%
!! GAAATGACATTTATTAAAAT+GGG - tig0016715:374173-374192 None:intergenic 15.0%
!! AGAAATGACATTTATTAAAA+TGG - tig0016715:374174-374193 None:intergenic 15.0%
!! CAAATTTAATAATGACAATT+TGG - tig0016715:374796-374815 None:intergenic 15.0%
!! CAAATTGTCATTATTAAATT+TGG + tig0016715:374794-374813 Msa1359630:intron 15.0%
!! TTAAAAAAATCAAATTGTGA+AGG + tig0016715:374908-374927 Msa1359630:intron 15.0%
!!! TTTTAATTCAGATATAGCAA+TGG + tig0016715:371699-371718 Msa1359630:intron 20.0%
!! TTTAATTCAGATATAGCAAT+GGG + tig0016715:371700-371719 Msa1359630:intron 20.0%
!!! AGAGTTTTTGAAAAAATTCA+AGG - tig0016715:371996-372015 None:intergenic 20.0%
!!! AAAGTTAAAAGCATAATTGA+CGG - tig0016715:372174-372193 None:intergenic 20.0%
!!! ATGCTTTTAACTTTGTTTAT+TGG + tig0016715:372180-372199 Msa1359630:intron 20.0%
!! GTAAAATTTGATTATTTGGA+AGG + tig0016715:372354-372373 Msa1359630:intron 20.0%
!!! TGAGTTATGAACTATTATTT+TGG + tig0016715:372685-372704 Msa1359630:intron 20.0%
!!! TATACTTAGTTTCTTTTTGT+TGG + tig0016715:372926-372945 Msa1359630:intron 20.0%
!!! GATCTTTTTATATTGTAAAC+AGG + tig0016715:372962-372981 Msa1359630:intron 20.0%
!!! TCTTTTTATATTGTAAACAG+GGG + tig0016715:372964-372983 Msa1359630:intron 20.0%
!!! AATATGTTTTAATATTCTGC+AGG + tig0016715:373784-373803 Msa1359630:intron 20.0%
!! ATATTGTCTATTGAGAAATA+GGG - tig0016715:373915-373934 None:intergenic 20.0%
!!! TGTTTTTGGAATTATATCAT+AGG + tig0016715:374064-374083 Msa1359630:intron 20.0%
!! AAATTGAACAAAACTGTTAA+TGG + tig0016715:374607-374626 Msa1359630:intron 20.0%
!! TATAATAGTATTTGTAGTTC+TGG - tig0016715:374693-374712 None:intergenic 20.0%
!!! CAATTTGATTTTTTTAAGTG+TGG - tig0016715:374905-374924 None:intergenic 20.0%
!! ACTACATTGAAATAATAACT+TGG - tig0016715:375099-375118 None:intergenic 20.0%
!! GTTATTATTTCAATGTAGTT+TGG + tig0016715:375100-375119 Msa1359630:intron 20.0%
!!! TTTTTGAAAAAGTAAACTAG+GGG - tig0016715:375508-375527 None:intergenic 20.0%
!!! GTTTTTGAAAAAGTAAACTA+GGG - tig0016715:375509-375528 None:intergenic 20.0%
!!! AGTTTTTGAAAAAGTAAACT+AGG - tig0016715:375510-375529 None:intergenic 20.0%
! ATTCATAATCATGAAGAACA+AGG - tig0016715:371250-371269 None:intergenic 25.0%
!! TGTTGTTTAATTTCCATTGT+TGG + tig0016715:371276-371295 Msa1359630:intron 25.0%
!!! TTCCATGTTTTTGTTGTATA+TGG + tig0016715:371455-371474 Msa1359630:intron 25.0%
! AACCATATACAACAAAAACA+TGG - tig0016715:371460-371479 None:intergenic 25.0%
!!! ATGTTTTTGTTGTATATGGT+TGG + tig0016715:371459-371478 Msa1359630:intron 25.0%
! TTGTTGAGAAAGAAACAAAA+AGG + tig0016715:371527-371546 Msa1359630:intron 25.0%
! CCAAATCAATTAACAAAAAG+AGG - tig0016715:371577-371596 None:intergenic 25.0%
!! CCTCTTTTTGTTAATTGATT+TGG + tig0016715:371574-371593 Msa1359630:intron 25.0%
! TAGATTTGCAAAAGTTGTAT+TGG + tig0016715:371601-371620 Msa1359630:intron 25.0%
!! TCTGAAAACTTTTCAGTTTT+AGG - tig0016715:371742-371761 None:intergenic 25.0%
! GAAAATGACAATCTTAGATA+TGG + tig0016715:371769-371788 Msa1359630:CDS 25.0%
!! AGTTTTTGTCAAAATCATGA+TGG + tig0016715:372106-372125 Msa1359630:intron 25.0%
! GGAGGTAAAATTTGATTATT+TGG + tig0016715:372350-372369 Msa1359630:intron 25.0%
! AATTTGATTATTTGGAAGGA+TGG + tig0016715:372358-372377 Msa1359630:intron 25.0%
!! TATGTTGAACACAAATTTTC+AGG + tig0016715:372421-372440 Msa1359630:intron 25.0%
! TAAAATCAAAACTTCACAAC+AGG - tig0016715:372578-372597 None:intergenic 25.0%
! GAAAAATTTATCACAAGTTC+AGG + tig0016715:372632-372651 Msa1359630:intron 25.0%
!!! CTTTTTTGTTACTTTCATAG+TGG - tig0016715:372665-372684 None:intergenic 25.0%
!!! ATTTTGGTTATTATGCAGAA+TGG + tig0016715:372701-372720 Msa1359630:intron 25.0%
!!! GACATAATTTTTTCTGACTA+TGG + tig0016715:373351-373370 Msa1359630:intron 25.0%
! CTAAGGTTAAAACTGAATAA+AGG - tig0016715:373553-373572 None:intergenic 25.0%
!!! AGGAAGTTTCCTTTTATTTT+CGG - tig0016715:373623-373642 None:intergenic 25.0%
!!! TTTTGTATGCTTTATTTTGG+AGG + tig0016715:373652-373671 Msa1359630:intron 25.0%
! AAACTTACAATGTTTATGTC+TGG - tig0016715:373871-373890 None:intergenic 25.0%
! CATATTGTCTATTGAGAAAT+AGG - tig0016715:373916-373935 None:intergenic 25.0%
!! CTATTTCTCAATAGACAATA+TGG + tig0016715:373914-373933 Msa1359630:intron 25.0%
! TTTATTAAAATGGGGAATTG+TGG - tig0016715:374164-374183 None:intergenic 25.0%
!! AATTCTTTTTCTTACGTTTC+AGG + tig0016715:374198-374217 Msa1359630:intron 25.0%
!! ATTCTTTTTCTTACGTTTCA+GGG + tig0016715:374199-374218 Msa1359630:intron 25.0%
!! AGTAATGATTCTTTTCAGTT+CGG - tig0016715:374572-374591 None:intergenic 25.0%
! AGGTTAACAAATAAACAGTT+CGG - tig0016715:374761-374780 None:intergenic 25.0%
!!! TTTTTAAGTGTGGTTTGATT+CGG - tig0016715:374895-374914 None:intergenic 25.0%
! TACATGTATATTGTATAGTG+TGG + tig0016715:375411-375430 Msa1359630:intron 25.0%
GAATGAAGAAATGAATGATG+GGG - tig0016715:371079-371098 None:intergenic 30.0%
CGAATGAAGAAATGAATGAT+GGG - tig0016715:371080-371099 None:intergenic 30.0%
ACGAATGAAGAAATGAATGA+TGG - tig0016715:371081-371100 None:intergenic 30.0%
TATGCATTCTCACATGAAAA+TGG - tig0016715:371169-371188 None:intergenic 30.0%
GATAAAGATAGAACCAACAA+TGG - tig0016715:371292-371311 None:intergenic 30.0%
! TTGTTTCTTTCTCAACAACA+TGG - tig0016715:371525-371544 None:intergenic 30.0%
! ACTGAAAAGTTTTCAGAAGA+TGG + tig0016715:371745-371764 Msa1359630:CDS 30.0%
TATGGTTTATCATCTATGCA+AGG + tig0016715:371787-371806 Msa1359630:CDS 30.0%
ATTGTAGAAGCAAGTATATG+TGG + tig0016715:371940-371959 Msa1359630:intron 30.0%
! AGTGTGATTGAATTGTGTTT+TGG + tig0016715:372132-372151 Msa1359630:intron 30.0%
! GTGTGATTGAATTGTGTTTT+GGG + tig0016715:372133-372152 Msa1359630:intron 30.0%
! TGTGATTGAATTGTGTTTTG+GGG + tig0016715:372134-372153 Msa1359630:intron 30.0%
!!! TTTTTTCTTTTGCTAGCATG+CGG + tig0016715:372274-372293 Msa1359630:intron 30.0%
!!! TGAACACAAATTTTCAGGTA+AGG + tig0016715:372426-372445 Msa1359630:intron 30.0%
TCTTAGGTGATAAGGTAAAA+GGG + tig0016715:372766-372785 Msa1359630:CDS 30.0%
GAATGATTGAAGGATTGATT+CGG + tig0016715:372796-372815 Msa1359630:CDS 30.0%
TCCTTATTATCATTGCTTCT+GGG - tig0016715:372825-372844 None:intergenic 30.0%
AAGGAAAGAATCTATAAAGC+TGG + tig0016715:373434-373453 Msa1359630:CDS 30.0%
TTAAATCTTGCAAGAGCTAT+AGG + tig0016715:373491-373510 Msa1359630:CDS 30.0%
ACTAAGATTATCATAGCTCA+AGG - tig0016715:373597-373616 None:intergenic 30.0%
CTTAGTGTACCGAAAATAAA+AGG + tig0016715:373611-373630 Msa1359630:intron 30.0%
TTGAAGAAGATGCACTTATA+TGG + tig0016715:373743-373762 Msa1359630:intron 30.0%
TACAATGTTTATGTCTGGAT+TGG - tig0016715:373866-373885 None:intergenic 30.0%
AAATGCTTAGTCAAGAGTTT+CGG + tig0016715:373951-373970 Msa1359630:intron 30.0%
!!! CTGAATGAGAGTTTTGTTTT+TGG + tig0016715:374050-374069 Msa1359630:intron 30.0%
! TTTATAGTGATAGCTTGTGA+TGG + tig0016715:374110-374129 Msa1359630:CDS 30.0%
GTACAAAATCTACCAATTGT+TGG - tig0016715:374238-374257 None:intergenic 30.0%
TTCATATACAAGACAGTACT+AGG - tig0016715:374368-374387 None:intergenic 30.0%
TGAATAACAAGGACTGTTTA+TGG + tig0016715:374522-374541 Msa1359630:intron 30.0%
! TTAAATTTGGCTCAAATTGC+TGG + tig0016715:374807-374826 Msa1359630:intron 30.0%
! GTTCACAGTTCTTTTCTTTT+TGG + tig0016715:374987-375006 Msa1359630:intron 30.0%
TTCGGTTTAACAGTTCAATT+TGG + tig0016715:375015-375034 Msa1359630:intron 30.0%
ATGCTTAGGGAAAAAAAACT+TGG - tig0016715:375070-375089 None:intergenic 30.0%
AACTTGGATCATTATGCTTA+GGG - tig0016715:375083-375102 None:intergenic 30.0%
TAACTTGGATCATTATGCTT+AGG - tig0016715:375084-375103 None:intergenic 30.0%
CGATAACATGACAATGATAT+TGG + tig0016715:375249-375268 Msa1359630:CDS 30.0%
! TAGATGCATTTTCTAAGCAT+AGG - tig0016715:375438-375457 None:intergenic 30.0%
! TGTTTTGCTTGTTCAATAAG+CGG + tig0016715:375536-375555 Msa1359630:three_prime_UTR 30.0%
! AACAATATGCAAGCATTTTG+AGG + tig0016715:375598-375617 Msa1359630:three_prime_UTR 30.0%
AGTGTGAAGAAAGAGATAGT+TGG - tig0016715:371025-371044 None:intergenic 35.0%
!!! TTCACACTTTTTCTATGTCC+TGG + tig0016715:371037-371056 Msa1359630:five_prime_UTR 35.0%
TTGCTACTCATATTCTCATC+CGG + tig0016715:371219-371238 Msa1359630:intron 35.0%
GTTTATCATCTATGCAAGGT+TGG + tig0016715:371791-371810 Msa1359630:CDS 35.0%
TCAATTGAAGTTCTTGTGTG+TGG + tig0016715:371843-371862 Msa1359630:intron 35.0%
!! TTTTAAGTACTTGTCTGCAG+TGG + tig0016715:372027-372046 Msa1359630:intron 35.0%
AAGCTTCAACAGAATCATGA+TGG - tig0016715:372078-372097 None:intergenic 35.0%
!! GATTCATCCACTTCGTTTTT+CGG + tig0016715:372311-372330 Msa1359630:CDS 35.0%
ATATACACCGAAAAACGAAG+TGG - tig0016715:372321-372340 None:intergenic 35.0%
!! TCGTTTTTCGGTGTATATGA+TGG + tig0016715:372323-372342 Msa1359630:CDS 35.0%
!!! ACACAAATTTTCAGGTAAGG+CGG + tig0016715:372429-372448 Msa1359630:intron 35.0%
AAGAGTGAAGAATACATAGC+TGG + tig0016715:372493-372512 Msa1359630:CDS 35.0%
!!! CTCTTACGAAAGCATTTTTC+AGG + tig0016715:372530-372549 Msa1359630:CDS 35.0%
ATTAGCAGTCTTAGGTGATA+AGG + tig0016715:372758-372777 Msa1359630:CDS 35.0%
GTCTTAGGTGATAAGGTAAA+AGG + tig0016715:372765-372784 Msa1359630:CDS 35.0%
GATAAGGTAAAAGGGTTCAA+TGG + tig0016715:372774-372793 Msa1359630:CDS 35.0%
TCCCAGAAGCAATGATAATA+AGG + tig0016715:372821-372840 Msa1359630:CDS 35.0%
GTCCTTATTATCATTGCTTC+TGG - tig0016715:372826-372845 None:intergenic 35.0%
ATAAGGACCAAAGTGATGAT+TGG + tig0016715:372838-372857 Msa1359630:CDS 35.0%
TAAGGACCAAAGTGATGATT+GGG + tig0016715:372839-372858 Msa1359630:CDS 35.0%
! GATCATTCCTACCTTTTCAA+AGG - tig0016715:372865-372884 None:intergenic 35.0%
TCTTATGTAGGCTATGTGTT+AGG + tig0016715:373310-373329 Msa1359630:intron 35.0%
! ACTATGGATTTTTGTTCTGC+AGG + tig0016715:373367-373386 Msa1359630:intron 35.0%
GAAAGAATCTATAAAGCTGG+TGG + tig0016715:373437-373456 Msa1359630:CDS 35.0%
ATTCATGCAGGACGAATTAA+TGG + tig0016715:373464-373483 Msa1359630:CDS 35.0%
TTCATGCAGGACGAATTAAT+GGG + tig0016715:373465-373484 Msa1359630:CDS 35.0%
GTACTTGTATGCATGTTGTT+TGG + tig0016715:373686-373705 Msa1359630:intron 35.0%
! AATGTTTATGTCTGGATTGG+CGG - tig0016715:373863-373882 None:intergenic 35.0%
TAAACTCATCTTCGTCATGA+AGG - tig0016715:374094-374113 None:intergenic 35.0%
TGTGCGTTACTTGAATAACA+AGG + tig0016715:374511-374530 Msa1359630:intron 35.0%
AACAAGGACTGTTTATGGTT+TGG + tig0016715:374527-374546 Msa1359630:intron 35.0%
! TGATTCTTTTCAGTTCGGTT+TGG - tig0016715:374567-374586 None:intergenic 35.0%
GGTATAAAGGTTCCAATCAT+CGG + tig0016715:374648-374667 Msa1359630:intron 35.0%
TCGTTCGAAAATGTACAGTT+TGG - tig0016715:374721-374740 None:intergenic 35.0%
CAATTTGGTACACAAAGCAA+AGG - tig0016715:374781-374800 None:intergenic 35.0%
!! CAGTTCTTTTCTTTTTGGTG+TGG + tig0016715:374992-375011 Msa1359630:intron 35.0%
!! CTTTTCTTTTTGGTGTGGTT+CGG + tig0016715:374997-375016 Msa1359630:intron 35.0%
!! CGATACACTTTTTATCTCAC+AGG + tig0016715:375150-375169 Msa1359630:intron 35.0%
ACAGGAAACTAAACTTTCTG+AGG + tig0016715:375168-375187 Msa1359630:intron 35.0%
TACATGTATGCGTTTAGTGT+TGG - tig0016715:375399-375418 None:intergenic 35.0%
GCTTAGAAAATGCATCTAGT+TGG + tig0016715:375440-375459 Msa1359630:three_prime_UTR 35.0%
! AGTTGGTACAGAGAGAAAGA+GGG - tig0016715:371008-371027 None:intergenic 40.0%
! TAGTTGGTACAGAGAGAAAG+AGG - tig0016715:371009-371028 None:intergenic 40.0%
! TGAAGAAATGAATGATGGGG+AGG - tig0016715:371076-371095 None:intergenic 40.0%
TGCTACTCATATTCTCATCC+GGG + tig0016715:371220-371239 Msa1359630:intron 40.0%
TTGAAGTTCTTGTGTGTGGA+TGG + tig0016715:371847-371866 Msa1359630:intron 40.0%
!! GTGTGTGGATGGATTTTTCT+TGG + tig0016715:371858-371877 Msa1359630:intron 40.0%
! TTCGGTGTATATGATGGTCA+TGG + tig0016715:372329-372348 Msa1359630:CDS 40.0%
GAATACATAGCTGGAGATGT+TGG + tig0016715:372502-372521 Msa1359630:CDS 40.0%
GGGTTCAATGGAATGATTGA+AGG + tig0016715:372786-372805 Msa1359630:CDS 40.0%
! TGATGATTGGGCCTTTGAAA+AGG + tig0016715:372851-372870 Msa1359630:CDS 40.0%
CAGCATTCGCAACAAAAAGT+AGG - tig0016715:373055-373074 None:intergenic 40.0%
!!! CTACTTTTTGTTGCGAATGC+TGG + tig0016715:373053-373072 Msa1359630:CDS 40.0%
ATTCACGCTGCGTAATATCT+AGG + tig0016715:373078-373097 Msa1359630:CDS 40.0%
CGTAATATCTAGGAATGGTC+AGG + tig0016715:373088-373107 Msa1359630:CDS 40.0%
ATGTAGGCTATGTGTTAGGT+AGG + tig0016715:373314-373333 Msa1359630:intron 40.0%
CATAGTACATACCTACCTAC+CGG + tig0016715:373516-373535 Msa1359630:intron 40.0%
AATAAAGGAAGCTCACTTGC+CGG - tig0016715:373538-373557 None:intergenic 40.0%
!!! TGCTTTATTTTGGAGGCAAG+AGG + tig0016715:373659-373678 Msa1359630:intron 40.0%
!!! TTTATTTTGGAGGCAAGAGG+AGG + tig0016715:373662-373681 Msa1359630:intron 40.0%
TTAATATTCTGCAGGTGACG+TGG + tig0016715:373792-373811 Msa1359630:intron 40.0%
! TAGGGTAATCTGACTTGCAA+TGG - tig0016715:373897-373916 None:intergenic 40.0%
! TGATAGCTTGTGATGGCATA+TGG + tig0016715:374117-374136 Msa1359630:CDS 40.0%
TTGCCTATCAAGCCAACAAT+TGG + tig0016715:374223-374242 Msa1359630:CDS 40.0%
!! CTACCAATTGTTGGCTTGAT+AGG - tig0016715:374229-374248 None:intergenic 40.0%
TGTACGTCAAGAACTTCTCT+TGG + tig0016715:374253-374272 Msa1359630:CDS 40.0%
TTCAAGTAACGCACATCAAC+AGG - tig0016715:374506-374525 None:intergenic 40.0%
! CCTTTATACCAGTTCTGGTT+CGG - tig0016715:374638-374657 None:intergenic 40.0%
TGGAACCTTTATACCAGTTC+TGG - tig0016715:374643-374662 None:intergenic 40.0%
CATAACACAGAACCGATGAT+TGG - tig0016715:374663-374682 None:intergenic 40.0%
TCTGCGCATTAACTGATGTT+AGG + tig0016715:374854-374873 Msa1359630:intron 40.0%
!! TTTGTGAAAGAGTGCTAGAC+CGG + tig0016715:375191-375210 Msa1359630:CDS 40.0%
GAAGATGATTGTTCTTGAGC+CGG - tig0016715:375310-375329 None:intergenic 40.0%
TGCATCATCTGAACCAACAT+TGG + tig0016715:375342-375361 Msa1359630:CDS 40.0%
CTTCAACTGTTCTCCAATGT+TGG - tig0016715:375358-375377 None:intergenic 40.0%
TGACTAGAAATACCGACACT+TGG - tig0016715:375564-375583 None:intergenic 40.0%
AGAGAAAGAGGGAGAGTAAG+AGG - tig0016715:370997-371016 None:intergenic 45.0%
CATGAAGAACAAGGAAGACC+CGG - tig0016715:371241-371260 None:intergenic 45.0%
TAAGTACTTGTCTGCAGTGG+CGG + tig0016715:372030-372049 Msa1359630:intron 45.0%
GGTGTATATGATGGTCATGG+AGG + tig0016715:372332-372351 Msa1359630:CDS 45.0%
AGAATGGATGAGATGATGCG+TGG + tig0016715:372717-372736 Msa1359630:intron 45.0%
ATGAGATGATGCGTGGTCAA+AGG + tig0016715:372724-372743 Msa1359630:CDS 45.0%
TGAGATGATGCGTGGTCAAA+GGG + tig0016715:372725-372744 Msa1359630:CDS 45.0%
TGGAGGGAATTAGCAGTCTT+AGG + tig0016715:372750-372769 Msa1359630:CDS 45.0%
CAAAGGCCCAATCATCACTT+TGG - tig0016715:372848-372867 None:intergenic 45.0%
! GATTGGGCCTTTGAAAAGGT+AGG + tig0016715:372855-372874 Msa1359630:intron 45.0%
GGTCCATCAAAGTCTGAATG+AGG - tig0016715:372990-373009 None:intergenic 45.0%
! GACTTTGATGGACCAACTTC+AGG + tig0016715:372996-373015 Msa1359630:CDS 45.0%
CGCTGCGTAATATCTAGGAA+TGG + tig0016715:373083-373102 Msa1359630:CDS 45.0%
TGCATGTCTCGTGATTTGAG+AGG + tig0016715:373234-373253 Msa1359630:intron 45.0%
ACCTGAGCTTGTGATTGAGA+AGG + tig0016715:373415-373434 Msa1359630:CDS 45.0%
TCCTTCTCAATCACAAGCTC+AGG - tig0016715:373419-373438 None:intergenic 45.0%
!!! GCTGGTGGTTTTATTCATGC+AGG + tig0016715:373452-373471 Msa1359630:CDS 45.0%
! GAGGGGAATGTCACTTACTA+AGG - tig0016715:373570-373589 None:intergenic 45.0%
GCTTGTGATGGCATATGGTA+TGG + tig0016715:374122-374141 Msa1359630:intron 45.0%
CCGAACCAGAACTGGTATAA+AGG + tig0016715:374635-374654 Msa1359630:intron 45.0%
TGCTGGCCATCACAAGTTAA+AGG + tig0016715:374824-374843 Msa1359630:intron 45.0%
!! CGAGTGCCTTTAACTTGTGA+TGG - tig0016715:374833-374852 None:intergenic 45.0%
!! GTGTGGTTTGATTCGGTCTT+TGG - tig0016715:374888-374907 None:intergenic 45.0%
GTTCATGAACTGAACTGAGC+TGG - tig0016715:374966-374985 None:intergenic 45.0%
CAATAAGCGGTTCCAAGTGT+CGG + tig0016715:375549-375568 Msa1359630:three_prime_UTR 45.0%
!! GGAGGTTGAAGAAGAGTACC+AGG - tig0016715:371058-371077 None:intergenic 50.0%
! TCTTGAGCACCTGTTGGTGA+AGG - tig0016715:372477-372496 None:intergenic 50.0%
CTTCACTCTTGAGCACCTGT+TGG - tig0016715:372483-372502 None:intergenic 50.0%
GAGATGATGCGTGGTCAAAG+GGG + tig0016715:372726-372745 Msa1359630:CDS 50.0%
GGGCCTCATTCAGACTTTGA+TGG + tig0016715:372984-373003 Msa1359630:CDS 50.0%
CAAGCAGTGCTTCCTGAAGT+TGG - tig0016715:373011-373030 None:intergenic 50.0%
ATCATAGCTCAAGGCGCAGA+GGG - tig0016715:373588-373607 None:intergenic 50.0%
TATCATAGCTCAAGGCGCAG+AGG - tig0016715:373589-373608 None:intergenic 50.0%
! TGGTTTGTCCGAACCAGAAC+TGG + tig0016715:374627-374646 Msa1359630:intron 50.0%
!! AAGAGTGCTAGACCGGTGTT+TGG + tig0016715:375198-375217 Msa1359630:CDS 50.0%
CCATCACCAACAGCCAAAGA+TGG - tig0016715:375226-375245 None:intergenic 50.0%
! CCATCTTTGGCTGTTGGTGA+TGG + tig0016715:375223-375242 Msa1359630:CDS 50.0%
GATGATTGTTCTTGAGCCGG+CGG - tig0016715:375307-375326 None:intergenic 50.0%
GCAAGGTTGGCGTGCAACAA+TGG + tig0016715:371804-371823 Msa1359630:CDS 55.0%
TGCCAAGCACCTTCACCAAC+AGG + tig0016715:372465-372484 Msa1359630:CDS 55.0%
!! CACCTGTTGGTGAAGGTGCT+TGG - tig0016715:372470-372489 None:intergenic 55.0%
TGATGCGTGGTCAAAGGGGA+TGG + tig0016715:372730-372749 Msa1359630:CDS 55.0%
AAGCTCACTTGCCGGTAGGT+AGG - tig0016715:373530-373549 None:intergenic 55.0%
AAGGAAGCTCACTTGCCGGT+AGG - tig0016715:373534-373553 None:intergenic 55.0%
TCATAGCTCAAGGCGCAGAG+GGG - tig0016715:373587-373606 None:intergenic 55.0%
CCAAAGATGGCGCCAAACAC+CGG - tig0016715:375213-375232 None:intergenic 55.0%
TTGGCGCCATCTTTGGCTGT+TGG + tig0016715:375217-375236 Msa1359630:CDS 55.0%
GCATGCGGCGCATCTTGATG+TGG + tig0016715:372289-372308 Msa1359630:intron 60.0%
TGCGTGGTCAAAGGGGATGG+AGG + tig0016715:372733-372752 Msa1359630:CDS 60.0%
GCGTGGTCAAAGGGGATGGA+GGG + tig0016715:372734-372753 Msa1359630:CDS 60.0%
CCGGTGTTTGGCGCCATCTT+TGG + tig0016715:375210-375229 Msa1359630:CDS 60.0%
ACTGCAGACAAGTGCACCGC+CGG + tig0016715:375288-375307 Msa1359630:CDS 60.0%
GGCGGTGCACTTGTCTGCAG+TGG - tig0016715:375289-375308 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0016715 gene 370960 375665 370960 ID=Msa1359630;Name=Msa1359630
tig0016715 mRNA 370960 375665 370960 ID=Msa1359630-mRNA-1;Parent=Msa1359630;Name=Msa1359630-mRNA-1;_AED=0.15;_eAED=0.15;_QI=107|1|1|1|0.81|0.75|12|266|360
tig0016715 exon 370960 371058 370960 ID=Msa1359630-mRNA-1:exon:11457;Parent=Msa1359630-mRNA-1
tig0016715 exon 371710 371834 371710 ID=Msa1359630-mRNA-1:exon:11458;Parent=Msa1359630-mRNA-1
tig0016715 exon 372290 372353 372290 ID=Msa1359630-mRNA-1:exon:11459;Parent=Msa1359630-mRNA-1
tig0016715 exon 372443 372551 372443 ID=Msa1359630-mRNA-1:exon:11460;Parent=Msa1359630-mRNA-1
tig0016715 exon 372719 372872 372719 ID=Msa1359630-mRNA-1:exon:11461;Parent=Msa1359630-mRNA-1
tig0016715 exon 372984 373109 372984 ID=Msa1359630-mRNA-1:exon:11462;Parent=Msa1359630-mRNA-1
tig0016715 exon 373389 373512 373389 ID=Msa1359630-mRNA-1:exon:11463;Parent=Msa1359630-mRNA-1
tig0016715 exon 373806 373882 373806 ID=Msa1359630-mRNA-1:exon:11464;Parent=Msa1359630-mRNA-1
tig0016715 exon 374086 374138 374086 ID=Msa1359630-mRNA-1:exon:11465;Parent=Msa1359630-mRNA-1
tig0016715 exon 374220 374274 374220 ID=Msa1359630-mRNA-1:exon:11466;Parent=Msa1359630-mRNA-1
tig0016715 exon 375172 375415 375172 ID=Msa1359630-mRNA-1:exon:11467;Parent=Msa1359630-mRNA-1
tig0016715 exon 375440 375665 375440 ID=Msa1359630-mRNA-1:exon:11468;Parent=Msa1359630-mRNA-1
tig0016715 five_prime_UTR 370960 371058 370960 ID=Msa1359630-mRNA-1:five_prime_utr;Parent=Msa1359630-mRNA-1
tig0016715 five_prime_UTR 371710 371717 371710 ID=Msa1359630-mRNA-1:five_prime_utr;Parent=Msa1359630-mRNA-1
tig0016715 CDS 371718 371834 371718 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 372290 372353 372290 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 372443 372551 372443 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 372719 372872 372719 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 372984 373109 372984 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 373389 373512 373389 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 373806 373882 373806 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 374086 374138 374086 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 374220 374274 374220 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 CDS 375172 375375 375172 ID=Msa1359630-mRNA-1:cds;Parent=Msa1359630-mRNA-1
tig0016715 three_prime_UTR 375376 375415 375376 ID=Msa1359630-mRNA-1:three_prime_utr;Parent=Msa1359630-mRNA-1
tig0016715 three_prime_UTR 375440 375665 375440 ID=Msa1359630-mRNA-1:three_prime_utr;Parent=Msa1359630-mRNA-1
Gene Sequence

>Msa1359630

ATGGGAACAACTCTCAGCATTCCTAAAACTGAAAAGTTTTCAGAAGATGGTGAAAATGACAATCTTAGATATGGTTTATCATCTATGCAAGGTTGGCGTGCAACAATGGAAGATGCACATGCGGCGCATCTTGATGTGGATTCATCCACTTCGTTTTTCGGTGTATATGATGGTCATGGAGGTAAGGCGGTTGCAAAGTTTTGTGCCAAGCACCTTCACCAACAGGTGCTCAAGAGTGAAGAATACATAGCTGGAGATGTTGGAACATCTCTTACGAAAGCATTTTTCAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTAGCAGTCTTAGGTGATAAGGTAAAAGGGTTCAATGGAATGATTGAAGGATTGATTCGGTCTCCCAGAAGCAATGATAATAAGGACCAAAGTGATGATTGGGCCTTTGAAAAGGGGCCTCATTCAGACTTTGATGGACCAACTTCAGGAAGCACTGCTTGTGTTGCAATCATTAGAAACAACCTACTTTTTGTTGCGAATGCTGGTGATTCACGCTGCGTAATATCTAGGAATGGTCAGGCATACAATTTATCTAGAGATCACAAACCTGAGCTTGTGATTGAGAAGGAAAGAATCTATAAAGCTGGTGGTTTTATTCATGCAGGACGAATTAATGGGAGTTTAAATCTTGCAAGAGCTATAGGTGACGTGGACTTCAAAAATAATAGATTTCTTTCTGCTGAAAAACAAGTTGTGACCGCCAATCCAGACATAAACATTGTTGACCTTCATGACGAAGATGAGTTTATAGTGATAGCTTGTGATGGCATATGGGATTGCCTATCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTTCTCTTGGAAACTAAACTTTCTGAGGTTTGTGAAAGAGTGCTAGACCGGTGTTTGGCGCCATCTTTGGCTGTTGGTGATGGATGCGATAACATGACAATGATATTGGTGCAGTTTAAAAAACCACTGCAGACAAGTGCACCGCCGGCTCAAGAACAATCATCTTCAAATGAACAAGATGCATCATCTGAACCAACATTGGAGAACAGTTGA

Protein sequence

>Msa1359630

MGTTLSIPKTEKFSEDGENDNLRYGLSSMQGWRATMEDAHAAHLDVDSSTSFFGVYDGHGGKAVAKFCAKHLHQQVLKSEEYIAGDVGTSLTKAFFRMDEMMRGQRGWRELAVLGDKVKGFNGMIEGLIRSPRSNDNKDQSDDWAFEKGPHSDFDGPTSGSTACVAIIRNNLLFVANAGDSRCVISRNGQAYNLSRDHKPELVIEKERIYKAGGFIHAGRINGSLNLARAIGDVDFKNNRFLSAEKQVVTANPDINIVDLHDEDEFIVIACDGIWDCLSSQQLVDFVRQELLLETKLSEVCERVLDRCLAPSLAVGDGCDNMTMILVQFKKPLQTSAPPAQEQSSSNEQDASSEPTLENS*