Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072240 | XP_013468035.1 | 97.253 | 182 | 5 | 0 | 2 | 183 | 83 | 264 | 2.71e-126 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072240 | sp|O34614|YTQB_BACSU | 37.143 | 175 | 101 | 3 | 3 | 175 | 13 | 180 | 2.53e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072240 | A0A072VJS6 | 97.253 | 182 | 5 | 0 | 2 | 183 | 83 | 264 | 1.29e-126 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072240 | Msa0681890 | 0.810505 | 1.115034e-50 | -8.615850e-47 |
| Msa0072240 | Msa0925160 | 0.802341 | 5.873923e-49 | -8.615850e-47 |
| Msa0072240 | Msa0930330 | 0.800828 | 1.199822e-48 | -8.615850e-47 |
| Msa0072240 | Msa1002040 | 0.800248 | 1.575196e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072240 | MtrunA17_Chr1g0179071 | 97.253 | 182 | 5 | 0 | 2 | 183 | 83 | 264 | 2.49e-130 | 366 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072240 | AT1G16445.1 | 66.848 | 184 | 59 | 1 | 2 | 183 | 89 | 272 | 7.87e-88 | 259 |
Find 58 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGTCGAATTCGTTTA+AGG | 0.130588 | 1_2:-44960281 | Msa0072240:three_prime_UTR |
| CAATGACTGTATCTCCTTTC+TGG | 0.196980 | 1_2:+44963760 | None:intergenic |
| CACCTTAGCATTGCGCAATT+TGG | 0.227250 | 1_2:-44963712 | Msa0072240:CDS |
| TATCTTCGGAATAAGAAAAT+TGG | 0.250552 | 1_2:+44960385 | None:intergenic |
| CTTACTAGTATTGTTAAATA+AGG | 0.281883 | 1_2:+44960308 | None:intergenic |
| AGAGAAGCAACATTGATTTC+TGG | 0.299262 | 1_2:+44966048 | None:intergenic |
| CAATATTTGCCATAGTAAAA+TGG | 0.299706 | 1_2:-44963117 | Msa0072240:CDS |
| AGGCTTGTTGCCTTCAACTT+AGG | 0.315106 | 1_2:-44961734 | Msa0072240:CDS |
| ACCTGAAAAGGGAGAATCTT+TGG | 0.326774 | 1_2:+44965976 | None:intergenic |
| CTAGATTGTCTGTTGAGAAT+TGG | 0.341283 | 1_2:-44960453 | Msa0072240:CDS |
| AGATAAGACTTCATTGTTGC+TGG | 0.368296 | 1_2:-44963631 | Msa0072240:CDS |
| AAGATCAGAAACAACATTAC+TGG | 0.374699 | 1_2:-44961678 | Msa0072240:CDS |
| GATAACATCACTGTTTCAAT+TGG | 0.376190 | 1_2:+44966160 | None:intergenic |
| TTCAACTTAGGTTATCTTCC+GGG | 0.393992 | 1_2:-44961722 | Msa0072240:CDS |
| GCAAGCTACAAATGCTAAAT+CGG | 0.395482 | 1_2:-44960423 | Msa0072240:CDS |
| GCAGGTATTTACATTATCTT+CGG | 0.414582 | 1_2:+44960371 | None:intergenic |
| ATGTAAATGGGTACCTGAAA+AGG | 0.416447 | 1_2:+44965964 | None:intergenic |
| CTTCAACTTAGGTTATCTTC+CGG | 0.423144 | 1_2:-44961723 | Msa0072240:CDS |
| CTCAGCAGTCCTCACCTCAT+TGG | 0.429506 | 1_2:+44963593 | None:intergenic |
| CTGGAGATGTTGGTTGGAGA+AGG | 0.436964 | 1_2:+44966067 | None:intergenic |
| TGGAGAAAGAAGAAGATTGA+AGG | 0.442468 | 1_2:+44965996 | None:intergenic |
| GTTGCTGATGAGTCACATAA+TGG | 0.443329 | 1_2:-44963690 | Msa0072240:CDS |
| TGTTGGTTGGAGAAGGAAGA+AGG | 0.450022 | 1_2:+44966074 | None:intergenic |
| TTAGCATAGTGGTTTATGTC+GGG | 0.463191 | 1_2:-44961613 | Msa0072240:CDS |
| AAGAAATATTACCGTCCACC+AGG | 0.491363 | 1_2:+44961587 | None:intergenic |
| CGGAAGATAACCTAAGTTGA+AGG | 0.503757 | 1_2:+44961724 | None:intergenic |
| TTGGAGAAGGAAGAAGGAAG+AGG | 0.510509 | 1_2:+44966080 | None:intergenic |
| AAATCTGTCCAGGGAAGAGT+TGG | 0.515730 | 1_2:-44960497 | Msa0072240:intron |
| AACCAAATTGCGCAATGCTA+AGG | 0.516356 | 1_2:+44963710 | None:intergenic |
| CGGAATAAGAAAATTGGTAT+CGG | 0.518914 | 1_2:+44960391 | None:intergenic |
| TGATTTCTGGAGATGTTGGT+TGG | 0.525157 | 1_2:+44966061 | None:intergenic |
| ATTATTTCTTTGTCACCTCC+CGG | 0.527941 | 1_2:+44961704 | None:intergenic |
| AGGAGGGCTTATTAGCATAG+TGG | 0.534041 | 1_2:-44961624 | Msa0072240:CDS |
| TCTGTCCAGGGAAGAGTTGG+AGG | 0.535087 | 1_2:-44960494 | Msa0072240:intron |
| CAATCAAGAAATCATATAGC+AGG | 0.536717 | 1_2:+44960353 | None:intergenic |
| TGGAAACATGTTGTCCAGAA+AGG | 0.540821 | 1_2:-44963774 | Msa0072240:CDS |
| TGTAAATGGGTACCTGAAAA+GGG | 0.548833 | 1_2:+44965965 | None:intergenic |
| TAATGGTTGTGTATACGCAT+TGG | 0.548925 | 1_2:-44963673 | Msa0072240:CDS |
| TTCAAAGCAATGCCTACGTT+AGG | 0.555593 | 1_2:-44963085 | Msa0072240:intron |
| ACATTGATTTCTGGAGATGT+TGG | 0.556359 | 1_2:+44966057 | None:intergenic |
| ATTAGCATAGTGGTTTATGT+CGG | 0.565881 | 1_2:-44961614 | Msa0072240:CDS |
| ACTATGCTAATAAGCCCTCC+TGG | 0.566809 | 1_2:+44961626 | None:intergenic |
| GTTTATGTCGGGCACCCTGG+TGG | 0.569259 | 1_2:-44961602 | Msa0072240:CDS |
| ATTGATGCGACATGTGGCAA+CGG | 0.582874 | 1_2:-44963741 | Msa0072240:CDS |
| ATGTCGGGCACCCTGGTGGA+CGG | 0.586367 | 1_2:-44961598 | Msa0072240:intron |
| GTGGTTTATGTCGGGCACCC+TGG | 0.587189 | 1_2:-44961605 | Msa0072240:CDS |
| AATGTAGAGAGAATAAAGAG+AGG | 0.590705 | 1_2:+44960243 | None:intergenic |
| AAAATTGGTATCGGAGCACA+TGG | 0.594476 | 1_2:+44960400 | None:intergenic |
| GCAAAGAGAATTCTAATACC+AGG | 0.619973 | 1_2:-44961644 | Msa0072240:CDS |
| ACAGTCATTGATGCGACATG+TGG | 0.653812 | 1_2:-44963747 | Msa0072240:CDS |
| AGAAATATTACCGTCCACCA+GGG | 0.662031 | 1_2:+44961588 | None:intergenic |
| AGAGAATTCTAATACCAGGA+GGG | 0.674542 | 1_2:-44961640 | Msa0072240:CDS |
| AACTTAGGTTATCTTCCGGG+AGG | 0.678013 | 1_2:-44961719 | Msa0072240:CDS |
| TATTTGCCATAGTAAAATGG+AGG | 0.679977 | 1_2:-44963114 | Msa0072240:CDS |
| AGTATTGTTAAATAAGGACA+AGG | 0.682690 | 1_2:+44960314 | None:intergenic |
| GAAAAGTGAGTACCTAACGT+AGG | 0.694613 | 1_2:+44963073 | None:intergenic |
| AAGAGAATTCTAATACCAGG+AGG | 0.699018 | 1_2:-44961641 | Msa0072240:CDS |
| AGCATCGCTTAGTTCCAATG+AGG | 0.713727 | 1_2:-44963607 | Msa0072240:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTATTATTTTGTTTAA+TGG | + | chr1_2:44960411-44960430 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTTTTAACTTA+TGG | - | chr1_2:44961359-44961378 | Msa0072240:intron | 10.0% |
| !!! | TTATTTTCTTTATGTATTAT+TGG | - | chr1_2:44964143-44964162 | Msa0072240:intron | 10.0% |
| !!! | ATTCTTTTTTTTTTTTTTTG+GGG | - | chr1_2:44964862-44964881 | Msa0072240:intron | 10.0% |
| !!! | ATTTAAAATCAATTAACAAT+AGG | + | chr1_2:44965838-44965857 | None:intergenic | 10.0% |
| !! | TTTAGTAAAATTTAAGAGTT+TGG | + | chr1_2:44963770-44963789 | None:intergenic | 15.0% |
| !!! | GTTTTTATCAATAACTAATA+TGG | - | chr1_2:44963804-44963823 | Msa0072240:intron | 15.0% |
| !! | ATGAATAAAATGAAAGTAAA+AGG | - | chr1_2:44963958-44963977 | Msa0072240:intron | 15.0% |
| !! | AATTAATTATATAATAGCTC+AGG | + | chr1_2:44964074-44964093 | None:intergenic | 15.0% |
| !!! | TAAAGAAAATAATTTTACCA+TGG | + | chr1_2:44964135-44964154 | None:intergenic | 15.0% |
| !!! | TATTGTTATTGAGTATAATA+AGG | - | chr1_2:44965056-44965075 | Msa0072240:intron | 15.0% |
| !!! | ATTGTTATTGAGTATAATAA+GGG | - | chr1_2:44965057-44965076 | Msa0072240:intron | 15.0% |
| !! | TATGATATATGTGTTTAATT+AGG | + | chr1_2:44965339-44965358 | None:intergenic | 15.0% |
| !!! | GATTTTAAATAACTCATTTT+TGG | - | chr1_2:44965848-44965867 | Msa0072240:intron | 15.0% |
| !!! | AGATTTAAAAGCATTATTAT+TGG | + | chr1_2:44965915-44965934 | None:intergenic | 15.0% |
| !!! | TTTACATTAAACTCACTTTT+AGG | + | chr1_2:44960689-44960708 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTGACATGTT+TGG | + | chr1_2:44960750-44960769 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAGGGTTGTAATT+AGG | - | chr1_2:44960861-44960880 | Msa0072240:intron | 20.0% |
| !!! | TTTTTTTAGGGTTGTAATTA+GGG | - | chr1_2:44960862-44960881 | Msa0072240:intron | 20.0% |
| !! | TAATTATATAGATTTGCATG+AGG | - | chr1_2:44961085-44961104 | Msa0072240:intron | 20.0% |
| !! | CAAATTCTAATATGGTATTA+GGG | - | chr1_2:44961159-44961178 | Msa0072240:intron | 20.0% |
| !! | ATATGATATGATATGAATAG+TGG | - | chr1_2:44961255-44961274 | Msa0072240:intron | 20.0% |
| !!! | GTATAACCTTATTAGAATTT+TGG | + | chr1_2:44961341-44961360 | None:intergenic | 20.0% |
| !!! | TTTTTAACTTATGGAATGTT+TGG | - | chr1_2:44961368-44961387 | Msa0072240:intron | 20.0% |
| !!! | TTGTATGTTTACTTTTTATG+TGG | - | chr1_2:44961782-44961801 | Msa0072240:intron | 20.0% |
| !! | TTTAAACAGCAAATGTTATT+AGG | + | chr1_2:44962287-44962306 | None:intergenic | 20.0% |
| !! | GACTTCTTAAAAAATTAAAC+TGG | + | chr1_2:44962347-44962366 | None:intergenic | 20.0% |
| !!! | ATTTTCTATTTTCAAGTTTG+TGG | + | chr1_2:44962995-44963014 | None:intergenic | 20.0% |
| !! | CTGAAAATATCAATATACAA+CGG | + | chr1_2:44963073-44963092 | None:intergenic | 20.0% |
| !!! | CTTAAATTTTACTAAAACCT+TGG | - | chr1_2:44963774-44963793 | Msa0072240:CDS | 20.0% |
| !!! | TTTATTCATCTTTTCTTCAA+TGG | + | chr1_2:44963897-44963916 | None:intergenic | 20.0% |
| !! | ATAGCTCACTATATTTATTT+AGG | + | chr1_2:44964334-44964353 | None:intergenic | 20.0% |
| !!! | TTGTTATTGAGTATAATAAG+GGG | - | chr1_2:44965058-44965077 | Msa0072240:intron | 20.0% |
| !! | AATCAAAACATTATTGCTTA+AGG | + | chr1_2:44965091-44965110 | None:intergenic | 20.0% |
| !! | AGGTTGAAAGTTAAATATTT+GGG | + | chr1_2:44965184-44965203 | None:intergenic | 20.0% |
| !!! | TAGGTTGAAAGTTAAATATT+TGG | + | chr1_2:44965185-44965204 | None:intergenic | 20.0% |
| !!! | TGTTGCTTTTGATTTTTTAA+TGG | - | chr1_2:44965252-44965271 | Msa0072240:intron | 20.0% |
| !! | ATAAATATGACACATATGTA+AGG | - | chr1_2:44965709-44965728 | Msa0072240:intron | 20.0% |
| !! | ATGATACTAGTATCTTAAAA+TGG | - | chr1_2:44965804-44965823 | Msa0072240:intron | 20.0% |
| !! | CTTACTAGTATTGTTAAATA+AGG | + | chr1_2:44966121-44966140 | None:intergenic | 20.0% |
| ! | AACACTATAAGGATGTAAAT+GGG | + | chr1_2:44960477-44960496 | None:intergenic | 25.0% |
| ! | AATCCTGAAAACATGAAAAA+GGG | + | chr1_2:44960542-44960561 | None:intergenic | 25.0% |
| ! | TAATCCTGAAAACATGAAAA+AGG | + | chr1_2:44960543-44960562 | None:intergenic | 25.0% |
| !! | AAATCAATTTTACACCTACT+TGG | - | chr1_2:44960759-44960778 | Msa0072240:intron | 25.0% |
| !!! | TAAACTAAGCCTATGTTTTT+TGG | + | chr1_2:44960787-44960806 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGGTTGTAATTAG+GGG | - | chr1_2:44960863-44960882 | Msa0072240:intron | 25.0% |
| ! | TTAGTCATAGAATTGATAGA+AGG | - | chr1_2:44961117-44961136 | Msa0072240:intron | 25.0% |
| ! | CTGAAATCCAAATTCTAATA+TGG | - | chr1_2:44961151-44961170 | Msa0072240:intron | 25.0% |
| ! | CCTAATACCATATTAGAATT+TGG | + | chr1_2:44961161-44961180 | None:intergenic | 25.0% |
| ! | CCAAATTCTAATATGGTATT+AGG | - | chr1_2:44961158-44961177 | Msa0072240:intron | 25.0% |
| ! | TAGGGCCTATTATAAATTAT+TGG | - | chr1_2:44961177-44961196 | Msa0072240:intron | 25.0% |
| ! | AGGGCCTATTATAAATTATT+GGG | - | chr1_2:44961178-44961197 | Msa0072240:intron | 25.0% |
| ! | ATGGCCCAATAATTTATAAT+AGG | + | chr1_2:44961185-44961204 | None:intergenic | 25.0% |
| ! | ATCCAACCAAAATTCTAATA+AGG | - | chr1_2:44961332-44961351 | Msa0072240:intron | 25.0% |
| !!! | AACCTTATTAGAATTTTGGT+TGG | + | chr1_2:44961337-44961356 | None:intergenic | 25.0% |
| ! | TTAAAACCCTCATTTGAATA+AGG | - | chr1_2:44961556-44961575 | Msa0072240:intron | 25.0% |
| ! | AGAATATTAAAATGCTGTCT+TGG | - | chr1_2:44961823-44961842 | Msa0072240:intron | 25.0% |
| !! | GTTTTTGAACTAGGATTTTT+AGG | - | chr1_2:44962158-44962177 | Msa0072240:intron | 25.0% |
| ! | TTTCAATTGCTGTAGAATAT+GGG | - | chr1_2:44962872-44962891 | Msa0072240:intron | 25.0% |
| ! | TTAACAGAATGAGCATTAAA+AGG | + | chr1_2:44963240-44963259 | None:intergenic | 25.0% |
| ! | CAATATTTGCCATAGTAAAA+TGG | - | chr1_2:44963309-44963328 | Msa0072240:intron | 25.0% |
| ! | AATATGTGTAAATAGTCACA+TGG | - | chr1_2:44963571-44963590 | Msa0072240:intron | 25.0% |
| ! | AAATGGAACAAATCAAATGT+TGG | + | chr1_2:44963659-44963678 | None:intergenic | 25.0% |
| !!! | AACATTTGATTTGTTCCATT+TGG | - | chr1_2:44963658-44963677 | Msa0072240:CDS | 25.0% |
| !! | TTTTATGAGAAAATACCTGA+TGG | + | chr1_2:44963838-44963857 | None:intergenic | 25.0% |
| !! | ATACAATGATTTTCATTCAC+TGG | - | chr1_2:44963924-44963943 | Msa0072240:intron | 25.0% |
| ! | TTATATAATAGCTCAGGTTA+TGG | + | chr1_2:44964068-44964087 | None:intergenic | 25.0% |
| ! | CACATAATTCTTGTAATCAA+GGG | + | chr1_2:44964598-44964617 | None:intergenic | 25.0% |
| ! | TCACATAATTCTTGTAATCA+AGG | + | chr1_2:44964599-44964618 | None:intergenic | 25.0% |
| ! | AAGCATTTCTTGAAACTTTA+AGG | - | chr1_2:44964628-44964647 | Msa0072240:intron | 25.0% |
| ! | TACTTCAAACATAGAAAATC+AGG | + | chr1_2:44964947-44964966 | None:intergenic | 25.0% |
| !! | TTAAGCTCTGTTTTGTATAT+AGG | - | chr1_2:44964969-44964988 | Msa0072240:intron | 25.0% |
| ! | AAAACATTATTGCTTAAGGA+GGG | + | chr1_2:44965087-44965106 | None:intergenic | 25.0% |
| ! | GGTTGAAAGTTAAATATTTG+GGG | + | chr1_2:44965183-44965202 | None:intergenic | 25.0% |
| !! | AATATATTTAGTCCCTGTTT+TGG | - | chr1_2:44965306-44965325 | Msa0072240:intron | 25.0% |
| ! | TCAAATAAGTCAATCCAAAT+TGG | - | chr1_2:44965552-44965571 | Msa0072240:intron | 25.0% |
| ! | TTATAGTATCCATTGCAAAA+TGG | - | chr1_2:44965587-44965606 | Msa0072240:intron | 25.0% |
| ! | ATACTAGTATCTTAAAATGG+AGG | - | chr1_2:44965807-44965826 | Msa0072240:intron | 25.0% |
| ! | TATCTTCGGAATAAGAAAAT+TGG | + | chr1_2:44966044-44966063 | None:intergenic | 25.0% |
| ! | AGTATTGTTAAATAAGGACA+AGG | + | chr1_2:44966115-44966134 | None:intergenic | 25.0% |
| GATAACATCACTGTTTCAAT+TGG | + | chr1_2:44960269-44960288 | None:intergenic | 30.0% | |
| CAACACTATAAGGATGTAAA+TGG | + | chr1_2:44960478-44960497 | None:intergenic | 30.0% | |
| ATGATGCAAACAACACTATA+AGG | + | chr1_2:44960488-44960507 | None:intergenic | 30.0% | |
| !! | ATACCCTTTTTCATGTTTTC+AGG | - | chr1_2:44960536-44960555 | Msa0072240:intron | 30.0% |
| !! | TTTCATGTTTTCAGGATTAG+AGG | - | chr1_2:44960544-44960563 | Msa0072240:intron | 30.0% |
| TACTTTACTTGATGCATCTT+AGG | - | chr1_2:44960632-44960651 | Msa0072240:intron | 30.0% | |
| !! | TTGATTTTGACATGTTTGGT+TGG | + | chr1_2:44960746-44960765 | None:intergenic | 30.0% |
| !!! | TATGTTTTTTGGTTCCAAGT+AGG | + | chr1_2:44960776-44960795 | None:intergenic | 30.0% |
| TACTTGGAACCAAAAAACAT+AGG | - | chr1_2:44960775-44960794 | Msa0072240:intron | 30.0% | |
| ATGAATAGTGGCTATATGAA+AGG | - | chr1_2:44961267-44961286 | Msa0072240:intron | 30.0% | |
| TGAATAGTGGCTATATGAAA+GGG | - | chr1_2:44961268-44961287 | Msa0072240:intron | 30.0% | |
| !! | AATGTTTGGATGAAGTGTTT+TGG | - | chr1_2:44961382-44961401 | Msa0072240:intron | 30.0% |
| !! | ATGTTTGGATGAAGTGTTTT+GGG | - | chr1_2:44961383-44961402 | Msa0072240:intron | 30.0% |
| ! | AGGGTGAAAATTTTCATTTC+AGG | + | chr1_2:44961523-44961542 | None:intergenic | 30.0% |
| !!! | AAATGAGGGTTTTAAAGAGA+AGG | + | chr1_2:44961551-44961570 | None:intergenic | 30.0% |
| GCAAAACCTTATTCAAATGA+GGG | + | chr1_2:44961565-44961584 | None:intergenic | 30.0% | |
| AGCAAAACCTTATTCAAATG+AGG | + | chr1_2:44961566-44961585 | None:intergenic | 30.0% | |
| !!! | GTTTACTTTTTATGTGGATG+TGG | - | chr1_2:44961788-44961807 | Msa0072240:intron | 30.0% |
| AAAAAACCAAGATACCACTT+TGG | + | chr1_2:44961909-44961928 | None:intergenic | 30.0% | |
| !! | TTTGAACTAGGATTTTTAGG+AGG | - | chr1_2:44962161-44962180 | Msa0072240:intron | 30.0% |
| !!! | TTTTTTATCGAGTGGTGTTA+AGG | - | chr1_2:44962184-44962203 | Msa0072240:intron | 30.0% |
| ! | TAAGAAGTCCTAATCGTTTT+TGG | - | chr1_2:44962358-44962377 | Msa0072240:intron | 30.0% |
| AGAATTTGCCAAAAACGATT+AGG | + | chr1_2:44962369-44962388 | None:intergenic | 30.0% | |
| TCTCTTTGCTTTATCTTTAG+AGG | - | chr1_2:44962386-44962405 | Msa0072240:intron | 30.0% | |
| CTCTTTGCTTTATCTTTAGA+GGG | - | chr1_2:44962387-44962406 | Msa0072240:intron | 30.0% | |
| !! | TCATTGATTCTATAGTAGCT+TGG | - | chr1_2:44962436-44962455 | Msa0072240:intron | 30.0% |
| ! | ATTTGTTGCAGAAGTCTATT+GGG | - | chr1_2:44962486-44962505 | Msa0072240:intron | 30.0% |
| !!! | TTATTGTTTTTGTTCCTACC+AGG | - | chr1_2:44962626-44962645 | Msa0072240:intron | 30.0% |
| !!! | TATTGTTTTTGTTCCTACCA+GGG | - | chr1_2:44962627-44962646 | Msa0072240:intron | 30.0% |
| CTTTCAATTGCTGTAGAATA+TGG | - | chr1_2:44962871-44962890 | Msa0072240:intron | 30.0% | |
| TTTGATCATTTATAGCAGGA+CGG | + | chr1_2:44963150-44963169 | None:intergenic | 30.0% | |
| TCAGTTTGATCATTTATAGC+AGG | + | chr1_2:44963154-44963173 | None:intergenic | 30.0% | |
| !! | CAGTATTGAATTCTAGAACT+AGG | - | chr1_2:44963208-44963227 | Msa0072240:intron | 30.0% |
| TATTTGCCATAGTAAAATGG+AGG | - | chr1_2:44963312-44963331 | Msa0072240:intron | 30.0% | |
| AAATTTAAGAGTTTGGTCCA+TGG | + | chr1_2:44963763-44963782 | None:intergenic | 30.0% | |
| TGATAAAAACTGTATAGCCA+AGG | + | chr1_2:44963794-44963813 | None:intergenic | 30.0% | |
| GTATTATTACTACTACGAAC+CGG | + | chr1_2:44964312-44964331 | None:intergenic | 30.0% | |
| GAAACTTGGTAGAAGAAATT+AGG | + | chr1_2:44964376-44964395 | None:intergenic | 30.0% | |
| AGAAGAACATGAATAAAGAG+TGG | + | chr1_2:44964406-44964425 | None:intergenic | 30.0% | |
| AATATGCTGCATATACATGT+AGG | - | chr1_2:44964672-44964691 | Msa0072240:intron | 30.0% | |
| AAGATCAGAAACAACATTAC+TGG | - | chr1_2:44964748-44964767 | Msa0072240:intron | 30.0% | |
| ATTAGCATAGTGGTTTATGT+CGG | - | chr1_2:44964812-44964831 | Msa0072240:intron | 30.0% | |
| ACATAGAAAATCAGGATGTT+TGG | + | chr1_2:44964939-44964958 | None:intergenic | 30.0% | |
| CAAAACATTATTGCTTAAGG+AGG | + | chr1_2:44965088-44965107 | None:intergenic | 30.0% | |
| GGCTAGTAAATACAATAGAT+TGG | - | chr1_2:44965273-44965292 | Msa0072240:intron | 30.0% | |
| AATATGTCAAGTCTTGGATT+TGG | - | chr1_2:44965668-44965687 | Msa0072240:intron | 30.0% | |
| AGATACTAGTATCATTCCAT+TGG | + | chr1_2:44965799-44965818 | None:intergenic | 30.0% | |
| ! | TAATGCTTTTAAATCTGTCC+AGG | - | chr1_2:44965919-44965938 | Msa0072240:intron | 30.0% |
| ! | AATGCTTTTAAATCTGTCCA+GGG | - | chr1_2:44965920-44965939 | Msa0072240:intron | 30.0% |
| CGGAATAAGAAAATTGGTAT+CGG | + | chr1_2:44966038-44966057 | None:intergenic | 30.0% | |
| GCAGGTATTTACATTATCTT+CGG | + | chr1_2:44966058-44966077 | None:intergenic | 30.0% | |
| CAATCAAGAAATCATATAGC+AGG | + | chr1_2:44966076-44966095 | None:intergenic | 30.0% | |
| ATTCTTGTCGAATTCGTTTA+AGG | - | chr1_2:44966145-44966164 | Msa0072240:five_prime_UTR | 30.0% | |
| AATGTAGAGAGAATAAAGAG+AGG | + | chr1_2:44966186-44966205 | None:intergenic | 30.0% | |
| !! | ACATTGATTTCTGGAGATGT+TGG | + | chr1_2:44960372-44960391 | None:intergenic | 35.0% |
| !! | AGAGAAGCAACATTGATTTC+TGG | + | chr1_2:44960381-44960400 | None:intergenic | 35.0% |
| TGGAGAAAGAAGAAGATTGA+AGG | + | chr1_2:44960433-44960452 | None:intergenic | 35.0% | |
| TGTAAATGGGTACCTGAAAA+GGG | + | chr1_2:44960464-44960483 | None:intergenic | 35.0% | |
| ATGTAAATGGGTACCTGAAA+AGG | + | chr1_2:44960465-44960484 | None:intergenic | 35.0% | |
| ! | CTTCCTCTTTGGAAAGAAAA+AGG | - | chr1_2:44960583-44960602 | Msa0072240:intron | 35.0% |
| ! | TTGCCTTTTTCTTTCCAAAG+AGG | + | chr1_2:44960589-44960608 | None:intergenic | 35.0% |
| !! | TGTTTGGATGAAGTGTTTTG+GGG | - | chr1_2:44961384-44961403 | Msa0072240:intron | 35.0% |
| TATGAAACTGCATAAGAGCA+AGG | - | chr1_2:44961464-44961483 | Msa0072240:intron | 35.0% | |
| AGCAAGGACATTACATTTCA+TGG | - | chr1_2:44961480-44961499 | Msa0072240:intron | 35.0% | |
| !! | TTTTAAAGAGAAGGAGAGGA+GGG | + | chr1_2:44961542-44961561 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr1_2:44961611-44961630 | Msa0072240:CDS | 35.0% |
| TTCCCACTTATACACCTTAA+GGG | + | chr1_2:44961648-44961667 | None:intergenic | 35.0% | |
| TTTCCCACTTATACACCTTA+AGG | + | chr1_2:44961649-44961668 | None:intergenic | 35.0% | |
| AGGTGTATAAGTGGGAAATT+CGG | - | chr1_2:44961651-44961670 | Msa0072240:CDS | 35.0% | |
| !! | TACTTTTTATGTGGATGTGG+AGG | - | chr1_2:44961791-44961810 | Msa0072240:intron | 35.0% |
| TTAAAATGCTGTCTTGGAAG+TGG | - | chr1_2:44961829-44961848 | Msa0072240:intron | 35.0% | |
| !!! | AGCCGTGTTTGTTTTACAAA+TGG | - | chr1_2:44961874-44961893 | Msa0072240:intron | 35.0% |
| CGCCATTTGTAAAACAAACA+CGG | + | chr1_2:44961879-44961898 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTACAAATGGCGA+TGG | - | chr1_2:44961880-44961899 | Msa0072240:intron | 35.0% |
| !!! | AGTTTTCATGCTGGTTCAAT+TGG | - | chr1_2:44962109-44962128 | Msa0072240:intron | 35.0% |
| !!! | TCCTGTTCTGTTTTTGAACT+AGG | - | chr1_2:44962149-44962168 | Msa0072240:intron | 35.0% |
| TCCTAGTTCAAAAACAGAAC+AGG | + | chr1_2:44962153-44962172 | None:intergenic | 35.0% | |
| !!! | TTAGGAGGTTTTTTATCGAG+TGG | - | chr1_2:44962176-44962195 | Msa0072240:intron | 35.0% |
| ! | AGGTGTTGTGTCTGTTATTT+CGG | - | chr1_2:44962204-44962223 | Msa0072240:intron | 35.0% |
| ACAGCAAATGTTATTAGGCT+AGG | + | chr1_2:44962282-44962301 | None:intergenic | 35.0% | |
| ATAGACTTCTGCAACAAATG+TGG | + | chr1_2:44962485-44962504 | None:intergenic | 35.0% | |
| ! | CATTTGTTGCAGAAGTCTAT+TGG | - | chr1_2:44962485-44962504 | Msa0072240:intron | 35.0% |
| TAATGGTTGTGTATACGCAT+TGG | - | chr1_2:44962753-44962772 | Msa0072240:intron | 35.0% | |
| AGATAAGACTTCATTGTTGC+TGG | - | chr1_2:44962795-44962814 | Msa0072240:intron | 35.0% | |
| ! | CAACTTCCTCCATTTTACTA+TGG | + | chr1_2:44963321-44963340 | None:intergenic | 35.0% |
| GTGAAACAAAGTTGGAATTG+AGG | + | chr1_2:44963524-44963543 | None:intergenic | 35.0% | |
| AGAAGAATTCGGTACGTATA+GGG | - | chr1_2:44964266-44964285 | Msa0072240:intron | 35.0% | |
| AAATGAATCACCATGAGTTG+AGG | + | chr1_2:44964437-44964456 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTTCAACCAATCAG+CGG | - | chr1_2:44964479-44964498 | Msa0072240:intron | 35.0% |
| CTTCAACTTAGGTTATCTTC+CGG | - | chr1_2:44964703-44964722 | Msa0072240:intron | 35.0% | |
| TTCAACTTAGGTTATCTTCC+GGG | - | chr1_2:44964704-44964723 | Msa0072240:intron | 35.0% | |
| ! | ATTATTTCTTTGTCACCTCC+CGG | + | chr1_2:44964725-44964744 | None:intergenic | 35.0% |
| GCAAAGAGAATTCTAATACC+AGG | - | chr1_2:44964782-44964801 | Msa0072240:intron | 35.0% | |
| AAGAGAATTCTAATACCAGG+AGG | - | chr1_2:44964785-44964804 | Msa0072240:intron | 35.0% | |
| AGAGAATTCTAATACCAGGA+GGG | - | chr1_2:44964786-44964805 | Msa0072240:intron | 35.0% | |
| TTAGCATAGTGGTTTATGTC+GGG | - | chr1_2:44964813-44964832 | Msa0072240:intron | 35.0% | |
| ! | GGCACATAAAGTATCAAACT+TGG | + | chr1_2:44965143-44965162 | None:intergenic | 35.0% |
| ! | TAAATACAATAGATTGGCCG+TGG | - | chr1_2:44965279-44965298 | Msa0072240:intron | 35.0% |
| ! | AAATACAATAGATTGGCCGT+GGG | - | chr1_2:44965280-44965299 | Msa0072240:intron | 35.0% |
| GACTAAATATATTGCTCCCA+CGG | + | chr1_2:44965299-44965318 | None:intergenic | 35.0% | |
| TTAGGCTGTTTACCAAAACA+GGG | + | chr1_2:44965321-44965340 | None:intergenic | 35.0% | |
| ATTAGGCTGTTTACCAAAAC+AGG | + | chr1_2:44965322-44965341 | None:intergenic | 35.0% | |
| GTAGTGTTATAGAGAGCTTA+TGG | - | chr1_2:44965461-44965480 | Msa0072240:intron | 35.0% | |
| AGATGGTTTAAGAGAGCTTA+TGG | + | chr1_2:44965505-44965524 | None:intergenic | 35.0% | |
| GAGCCATCATGTTTAAACAA+CGG | - | chr1_2:44965617-44965636 | Msa0072240:intron | 35.0% | |
| AGCCATCATGTTTAAACAAC+GGG | - | chr1_2:44965618-44965637 | Msa0072240:intron | 35.0% | |
| ! | GTCTAGAATATGTCAAGTCT+TGG | - | chr1_2:44965662-44965681 | Msa0072240:intron | 35.0% |
| ! | AAGTCTTGGATTTGGAACAT+CGG | - | chr1_2:44965676-44965695 | Msa0072240:intron | 35.0% |
| ! | TCAGATTTGGTAAATGCCAA+TGG | - | chr1_2:44965780-44965799 | Msa0072240:intron | 35.0% |
| TTGGCTTCAATTAACATGCT+TGG | - | chr1_2:44965867-44965886 | Msa0072240:intron | 35.0% | |
| CTAGATTGTCTGTTGAGAAT+TGG | - | chr1_2:44965973-44965992 | Msa0072240:intron | 35.0% | |
| GCAAGCTACAAATGCTAAAT+CGG | - | chr1_2:44966003-44966022 | Msa0072240:five_prime_UTR | 35.0% | |
| ! | TGATTTCTGGAGATGTTGGT+TGG | + | chr1_2:44960368-44960387 | None:intergenic | 40.0% |
| ! | TCCAAAGATTCTCCCTTTTC+AGG | - | chr1_2:44960449-44960468 | Msa0072240:CDS | 40.0% |
| ACCTGAAAAGGGAGAATCTT+TGG | + | chr1_2:44960453-44960472 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGCTTCCTCTT+TGG | - | chr1_2:44960572-44960591 | Msa0072240:intron | 40.0% |
| ! | CATCTGAAGCATGACTCTTA+TGG | + | chr1_2:44961204-44961223 | None:intergenic | 40.0% |
| AGATGTTGAGAGTCTCTGAT+GGG | - | chr1_2:44961226-44961245 | Msa0072240:intron | 40.0% | |
| AATAGCTAGCTCAAGTGATG+AGG | + | chr1_2:44961299-44961318 | None:intergenic | 40.0% | |
| TCATCACTTGAGCTAGCTAT+TGG | - | chr1_2:44961298-44961317 | Msa0072240:intron | 40.0% | |
| CATCACTTGAGCTAGCTATT+GGG | - | chr1_2:44961299-44961318 | Msa0072240:intron | 40.0% | |
| ATCACTTGAGCTAGCTATTG+GGG | - | chr1_2:44961300-44961319 | Msa0072240:intron | 40.0% | |
| !!! | TGAAGTGTTTTGGGGAAAGA+TGG | - | chr1_2:44961392-44961411 | Msa0072240:intron | 40.0% |
| !!! | GTTTTGGGGAAAGATGGAAT+TGG | - | chr1_2:44961398-44961417 | Msa0072240:intron | 40.0% |
| !!! | GTTTTAAAGAGAAGGAGAGG+AGG | + | chr1_2:44961543-44961562 | None:intergenic | 40.0% |
| !!! | AGGGTTTTAAAGAGAAGGAG+AGG | + | chr1_2:44961546-44961565 | None:intergenic | 40.0% |
| TGGCTAGAAATTGACCCTTA+AGG | - | chr1_2:44961631-44961650 | Msa0072240:CDS | 40.0% | |
| TGACCCTTAAGGTGTATAAG+TGG | - | chr1_2:44961642-44961661 | Msa0072240:CDS | 40.0% | |
| GACCCTTAAGGTGTATAAGT+GGG | - | chr1_2:44961643-44961662 | Msa0072240:CDS | 40.0% | |
| GGTGTATAAGTGGGAAATTC+GGG | - | chr1_2:44961652-44961671 | Msa0072240:CDS | 40.0% | |
| ACATTCTATATGCAAGCGCT+GGG | + | chr1_2:44961685-44961704 | None:intergenic | 40.0% | |
| TGGAATCCAAAGTGGTATCT+TGG | - | chr1_2:44961900-44961919 | Msa0072240:intron | 40.0% | |
| GTCTGAAGGTCTATATGTGA+TGG | - | chr1_2:44961933-44961952 | Msa0072240:intron | 40.0% | |
| GTGAAGAAACCAAAACAGCA+GGG | + | chr1_2:44961962-44961981 | None:intergenic | 40.0% | |
| TGTGAAGAAACCAAAACAGC+AGG | + | chr1_2:44961963-44961982 | None:intergenic | 40.0% | |
| !!! | TGCTGTTTTGGTTTCTTCAC+AGG | - | chr1_2:44961962-44961981 | Msa0072240:intron | 40.0% |
| !! | GTTTTTGTGATTTGGCTAGG+AGG | - | chr1_2:44962079-44962098 | Msa0072240:intron | 40.0% |
| ! | GGTTTTTGCAGTTTTCATGC+TGG | - | chr1_2:44962100-44962119 | Msa0072240:intron | 40.0% |
| ! | TGTACTCTTTTTCCTCCTTG+CGG | - | chr1_2:44962235-44962254 | Msa0072240:intron | 40.0% |
| ! | TTTTTGTTCCTACCAGGGTA+TGG | - | chr1_2:44962632-44962651 | Msa0072240:intron | 40.0% |
| TGGAAACATGTTGTCCAGAA+AGG | - | chr1_2:44962652-44962671 | Msa0072240:intron | 40.0% | |
| CAATGACTGTATCTCCTTTC+TGG | + | chr1_2:44962669-44962688 | None:intergenic | 40.0% | |
| AACCAAATTGCGCAATGCTA+AGG | + | chr1_2:44962719-44962738 | None:intergenic | 40.0% | |
| GTTGCTGATGAGTCACATAA+TGG | - | chr1_2:44962736-44962755 | Msa0072240:intron | 40.0% | |
| TCAATATACAACGGCTTGTC+CGG | + | chr1_2:44963064-44963083 | None:intergenic | 40.0% | |
| TTCAAAGCAATGCCTACGTT+AGG | - | chr1_2:44963341-44963360 | Msa0072240:intron | 40.0% | |
| GAAAAGTGAGTACCTAACGT+AGG | + | chr1_2:44963356-44963375 | None:intergenic | 40.0% | |
| GCATGCAAGTGAAACAAAGT+TGG | + | chr1_2:44963532-44963551 | None:intergenic | 40.0% | |
| ATGAATTTGAGAAGCCTCCA+TGG | - | chr1_2:44963743-44963762 | Msa0072240:CDS | 40.0% | |
| TTTAAGAGTTTGGTCCATGG+AGG | + | chr1_2:44963760-44963779 | None:intergenic | 40.0% | |
| AGCCATAGTCACATAATTCG+CGG | - | chr1_2:44964196-44964215 | Msa0072240:intron | 40.0% | |
| AACCGCGAATTATGTGACTA+TGG | + | chr1_2:44964201-44964220 | None:intergenic | 40.0% | |
| GAGAAGAATTCGGTACGTAT+AGG | - | chr1_2:44964265-44964284 | Msa0072240:intron | 40.0% | |
| GAAGAATTCGGTACGTATAG+GGG | - | chr1_2:44964267-44964286 | Msa0072240:intron | 40.0% | |
| ! | CCGCTGATTGGTTGAAAAAA+AGG | + | chr1_2:44964482-44964501 | None:intergenic | 40.0% |
| ATCAAGGGAGAATTGCGAAT+TGG | + | chr1_2:44964583-44964602 | None:intergenic | 40.0% | |
| ! | CGGAAGATAACCTAAGTTGA+AGG | + | chr1_2:44964705-44964724 | None:intergenic | 40.0% |
| AGAAATATTACCGTCCACCA+GGG | + | chr1_2:44964841-44964860 | None:intergenic | 40.0% | |
| AAGAAATATTACCGTCCACC+AGG | + | chr1_2:44964842-44964861 | None:intergenic | 40.0% | |
| AACCTAGTCTGTTAACACAC+TGG | - | chr1_2:44965199-44965218 | Msa0072240:intron | 40.0% | |
| TACCAGTGTGTTAACAGACT+AGG | + | chr1_2:44965204-44965223 | None:intergenic | 40.0% | |
| ! | AGTCAATCCAAATTGGCTCT+TGG | - | chr1_2:44965559-44965578 | Msa0072240:intron | 40.0% |
| AAACACACCAAGAGCCAATT+TGG | + | chr1_2:44965569-44965588 | None:intergenic | 40.0% | |
| TCCATTGCAAAATGGCTGAT+TGG | - | chr1_2:44965595-44965614 | Msa0072240:intron | 40.0% | |
| !! | TCCAATCAGCCATTTTGCAA+TGG | + | chr1_2:44965599-44965618 | None:intergenic | 40.0% |
| GCCATCATGTTTAAACAACG+GGG | - | chr1_2:44965619-44965638 | Msa0072240:intron | 40.0% | |
| ACCCCGTTGTTTAAACATGA+TGG | + | chr1_2:44965623-44965642 | None:intergenic | 40.0% | |
| TGTATCTCTCACTACAGAAG+AGG | - | chr1_2:44965753-44965772 | Msa0072240:intron | 40.0% | |
| CAGAAGAGGCAAATCAGATT+TGG | - | chr1_2:44965767-44965786 | Msa0072240:intron | 40.0% | |
| ! | AAAATTGGTATCGGAGCACA+TGG | + | chr1_2:44966029-44966048 | None:intergenic | 40.0% |
| TTGGAGAAGGAAGAAGGAAG+AGG | + | chr1_2:44960349-44960368 | None:intergenic | 45.0% | |
| ! | TGTTGGTTGGAGAAGGAAGA+AGG | + | chr1_2:44960355-44960374 | None:intergenic | 45.0% |
| GAGATGTTGAGAGTCTCTGA+TGG | - | chr1_2:44961225-44961244 | Msa0072240:intron | 45.0% | |
| TTGGGGAAAGATGGAATTGG+CGG | - | chr1_2:44961401-44961420 | Msa0072240:intron | 45.0% | |
| !! | AGGGTCAATTTCTAGCCACT+AGG | + | chr1_2:44961629-44961648 | None:intergenic | 45.0% |
| CACATTCTATATGCAAGCGC+TGG | + | chr1_2:44961686-44961705 | None:intergenic | 45.0% | |
| !! | GAGCATAGCTCAAGTTGGTA+GGG | + | chr1_2:44961713-44961732 | None:intergenic | 45.0% |
| !! | TGAGCATAGCTCAAGTTGGT+AGG | + | chr1_2:44961714-44961733 | None:intergenic | 45.0% |
| TGTGTGAGCATAGCTCAAGT+TGG | + | chr1_2:44961718-44961737 | None:intergenic | 45.0% | |
| CTTGGAAGTGGAGTTTATCG+AGG | - | chr1_2:44961841-44961860 | Msa0072240:intron | 45.0% | |
| AATGGCGATGGAATCCAAAG+TGG | - | chr1_2:44961892-44961911 | Msa0072240:intron | 45.0% | |
| !!! | TTGGTTTTTTGCGCGTCTGA+AGG | - | chr1_2:44961919-44961938 | Msa0072240:intron | 45.0% |
| GTTTCTTCACAGGCTGTTCA+GGG | - | chr1_2:44961972-44961991 | Msa0072240:intron | 45.0% | |
| ! | GCTAGGCGGTTTTTGTGATT+TGG | - | chr1_2:44962071-44962090 | Msa0072240:intron | 45.0% |
| !! | GCGGTTTTTGTGATTTGGCT+AGG | - | chr1_2:44962076-44962095 | Msa0072240:intron | 45.0% |
| TGGTTCAATTGGCAGTGTAG+TGG | - | chr1_2:44962120-44962139 | Msa0072240:intron | 45.0% | |
| ! | GTACTCTTTTTCCTCCTTGC+GGG | - | chr1_2:44962236-44962255 | Msa0072240:intron | 45.0% |
| TGCAGAAGTCTATTGGGCAA+TGG | - | chr1_2:44962492-44962511 | Msa0072240:intron | 45.0% | |
| GCAGAAGTCTATTGGGCAAT+GGG | - | chr1_2:44962493-44962512 | Msa0072240:intron | 45.0% | |
| ACATGTTTCCATACCCTGGT+AGG | + | chr1_2:44962643-44962662 | None:intergenic | 45.0% | |
| GACAACATGTTTCCATACCC+TGG | + | chr1_2:44962647-44962666 | None:intergenic | 45.0% | |
| ACAGTCATTGATGCGACATG+TGG | - | chr1_2:44962679-44962698 | Msa0072240:intron | 45.0% | |
| ATTGATGCGACATGTGGCAA+CGG | - | chr1_2:44962685-44962704 | Msa0072240:intron | 45.0% | |
| CACCTTAGCATTGCGCAATT+TGG | - | chr1_2:44962714-44962733 | Msa0072240:intron | 45.0% | |
| AGCATCGCTTAGTTCCAATG+AGG | - | chr1_2:44962819-44962838 | Msa0072240:intron | 45.0% | |
| CAGAAAATATCGCCGCAAAC+CGG | - | chr1_2:44963042-44963061 | Msa0072240:intron | 45.0% | |
| CAGAGAGACGATGCAAGTTA+AGG | + | chr1_2:44963378-44963397 | None:intergenic | 45.0% | |
| !! | CGGGCTTTAAAGGATGATTG+TGG | - | chr1_2:44963618-44963637 | Msa0072240:CDS | 45.0% |
| GCTTGACATAGCACTCCAAA+TGG | + | chr1_2:44963676-44963695 | None:intergenic | 45.0% | |
| ! | TGGAGTGCTATGTCAAGCAA+TGG | - | chr1_2:44963678-44963697 | Msa0072240:CDS | 45.0% |
| AATATGGATCTCACGCCATC+AGG | - | chr1_2:44963820-44963839 | Msa0072240:intron | 45.0% | |
| GTTAGCTGTGCTTGTAACCA+TGG | - | chr1_2:44964115-44964134 | Msa0072240:intron | 45.0% | |
| ACATAATTCGCGGTTCGTTC+CGG | - | chr1_2:44964206-44964225 | Msa0072240:intron | 45.0% | |
| TACGCGACAGGAGAAGAATT+CGG | - | chr1_2:44964255-44964274 | Msa0072240:intron | 45.0% | |
| ! | CGTATAGGGGTATACAGCTT+CGG | - | chr1_2:44964280-44964299 | Msa0072240:intron | 45.0% |
| AGAGTGGAGAGTGAGAAACT+TGG | + | chr1_2:44964390-44964409 | None:intergenic | 45.0% | |
| AAAGCATGGTTACCGCTGAT+TGG | + | chr1_2:44964494-44964513 | None:intergenic | 45.0% | |
| AATCAGCGGTAACCATGCTT+TGG | - | chr1_2:44964493-44964512 | Msa0072240:intron | 45.0% | |
| TAACCATGCTTTGGTACGCT+TGG | - | chr1_2:44964502-44964521 | Msa0072240:intron | 45.0% | |
| ! | AGTACCGAATTCGGGTACTT+CGG | + | chr1_2:44964554-44964573 | None:intergenic | 45.0% |
| !! | TGGTACGTGAGTACCGAATT+CGG | + | chr1_2:44964563-44964582 | None:intergenic | 45.0% |
| !! | AGGCTTGTTGCCTTCAACTT+AGG | - | chr1_2:44964692-44964711 | Msa0072240:intron | 45.0% |
| AACTTAGGTTATCTTCCGGG+AGG | - | chr1_2:44964707-44964726 | Msa0072240:intron | 45.0% | |
| ACTATGCTAATAAGCCCTCC+TGG | + | chr1_2:44964803-44964822 | None:intergenic | 45.0% | |
| AGGAGGGCTTATTAGCATAG+TGG | - | chr1_2:44964802-44964821 | Msa0072240:intron | 45.0% | |
| ATGCATAAGCACTAGCGAGA+TGG | + | chr1_2:44965522-44965541 | None:intergenic | 45.0% | |
| AAATCTGTCCAGGGAAGAGT+TGG | - | chr1_2:44965929-44965948 | Msa0072240:intron | 45.0% | |
| !!! | TTATTATTATTTTGTTTAAT+GGG | + | chr1_2:44960410-44960429 | None:intergenic | 5.0% |
| !!! | ATGTTTTTTTAAATTTTTTT+AGG | - | chr1_2:44960849-44960868 | Msa0072240:intron | 5.0% |
| !!! | TGTTTTTTTAAATTTTTTTA+GGG | - | chr1_2:44960850-44960869 | Msa0072240:intron | 5.0% |
| !!! | TTATTCTTTTTTTTTTTTTT+TGG | - | chr1_2:44964860-44964879 | Msa0072240:intron | 5.0% |
| !!! | TATTCTTTTTTTTTTTTTTT+GGG | - | chr1_2:44964861-44964880 | Msa0072240:intron | 5.0% |
| ! | CTGGAGATGTTGGTTGGAGA+AGG | + | chr1_2:44960362-44960381 | None:intergenic | 50.0% |
| TGTGGATGTGGAGGAAGTAG+TGG | - | chr1_2:44961800-44961819 | Msa0072240:intron | 50.0% | |
| !! | TGATGGCTTCCCTGCTGTTT+TGG | - | chr1_2:44961950-44961969 | Msa0072240:intron | 50.0% |
| GGTTTCTTCACAGGCTGTTC+AGG | - | chr1_2:44961971-44961990 | Msa0072240:intron | 50.0% | |
| GGTTGCTTCGGTTTCTGTCT+TGG | - | chr1_2:44962046-44962065 | Msa0072240:intron | 50.0% | |
| TTTCTGTCTTGGCAGCTAGG+CGG | - | chr1_2:44962057-44962076 | Msa0072240:intron | 50.0% | |
| CAAGATGCACTTAACCCGCA+AGG | + | chr1_2:44962253-44962272 | None:intergenic | 50.0% | |
| CGCTTAGTTCCAATGAGGTG+AGG | - | chr1_2:44962824-44962843 | Msa0072240:intron | 50.0% | |
| TGAGGACTGCTGAGGAGTTA+AGG | - | chr1_2:44962842-44962861 | Msa0072240:intron | 50.0% | |
| CTCACATTGCGTCACATCCA+TGG | - | chr1_2:44963594-44963613 | Msa0072240:intron | 50.0% | |
| CATTGCGTCACATCCATGGT+CGG | - | chr1_2:44963598-44963617 | Msa0072240:intron | 50.0% | |
| ATTGCGTCACATCCATGGTC+GGG | - | chr1_2:44963599-44963618 | Msa0072240:intron | 50.0% | |
| ! | CATCCATGGTCGGGCTTTAA+AGG | - | chr1_2:44963608-44963627 | Msa0072240:CDS | 50.0% |
| !! | CATCCTTTAAAGCCCGACCA+TGG | + | chr1_2:44963614-44963633 | None:intergenic | 50.0% |
| TATACAGCTTCGGTACGCTC+CGG | - | chr1_2:44964290-44964309 | Msa0072240:intron | 50.0% | |
| CTCACTCAGTCCTCAACTCA+TGG | - | chr1_2:44964424-44964443 | Msa0072240:intron | 50.0% | |
| GAACCAAGCGTACCAAAGCA+TGG | + | chr1_2:44964508-44964527 | None:intergenic | 50.0% | |
| ATTCGGGTACTTCGGCGTAT+TGG | + | chr1_2:44964546-44964565 | None:intergenic | 50.0% | |
| ! | TACGCCGAAGTACCCGAATT+CGG | - | chr1_2:44964547-44964566 | Msa0072240:intron | 50.0% |
| !! | GGTACGTGAGTACCGAATTC+GGG | + | chr1_2:44964562-44964581 | None:intergenic | 50.0% |
| !! | GGGGCTGTTTTGCTATGTGA+AGG | + | chr1_2:44965164-44965183 | None:intergenic | 50.0% |
| AACAACCTCCAACTCTTCCC+TGG | + | chr1_2:44965940-44965959 | None:intergenic | 50.0% | |
| CTGCTGCTGTCTGGTTGCTT+CGG | - | chr1_2:44962034-44962053 | Msa0072240:intron | 55.0% | |
| CGGTTTCTGTCTTGGCAGCT+AGG | - | chr1_2:44962054-44962073 | Msa0072240:intron | 55.0% | |
| GATGCACTTAACCCGCAAGG+AGG | + | chr1_2:44962250-44962269 | None:intergenic | 55.0% | |
| CTCAGCAGTCCTCACCTCAT+TGG | + | chr1_2:44962836-44962855 | None:intergenic | 55.0% | |
| CAATGAGGTGAGGACTGCTG+AGG | - | chr1_2:44962834-44962853 | Msa0072240:intron | 55.0% | |
| ! | ACAACGGCTTGTCCGGTTTG+CGG | + | chr1_2:44963057-44963076 | None:intergenic | 55.0% |
| ! | CTTTGGTACGCTTGGTTCGC+TGG | - | chr1_2:44964510-44964529 | Msa0072240:intron | 55.0% |
| TCTGTCCAGGGAAGAGTTGG+AGG | - | chr1_2:44965932-44965951 | Msa0072240:intron | 55.0% | |
| TAGCCATGCCTGCTGCTGTC+TGG | - | chr1_2:44962025-44962044 | Msa0072240:intron | 60.0% | |
| CAACCAGACAGCAGCAGGCA+TGG | + | chr1_2:44962031-44962050 | None:intergenic | 60.0% | |
| CGAAGCAACCAGACAGCAGC+AGG | + | chr1_2:44962036-44962055 | None:intergenic | 60.0% | |
| GTTCGTTCCGGTACGCGGTA+CGG | - | chr1_2:44964218-44964237 | Msa0072240:intron | 60.0% | |
| TCCGGTACGCGGTACGGATA+CGG | - | chr1_2:44964224-44964243 | Msa0072240:intron | 60.0% | |
| GTGGTTTATGTCGGGCACCC+TGG | - | chr1_2:44964821-44964840 | Msa0072240:intron | 60.0% | |
| GTTTATGTCGGGCACCCTGG+TGG | - | chr1_2:44964824-44964843 | Msa0072240:intron | 60.0% | |
| TCGCGGTTCGTTCCGGTACG+CGG | - | chr1_2:44964213-44964232 | Msa0072240:intron | 65.0% | |
| CCCGTATCCGTACCGCGTAC+CGG | + | chr1_2:44964228-44964247 | None:intergenic | 65.0% | |
| CCGGTACGCGGTACGGATAC+GGG | - | chr1_2:44964225-44964244 | Msa0072240:intron | 65.0% | |
| GCGGTACGGATACGGGTTCG+CGG | - | chr1_2:44964232-44964251 | Msa0072240:intron | 65.0% | |
| ATGTCGGGCACCCTGGTGGA+CGG | - | chr1_2:44964828-44964847 | Msa0072240:intron | 65.0% | |
| !! | TCAGGGTGCTGCAGCGCTGC+TGG | - | chr1_2:44961989-44962008 | Msa0072240:intron | 70.0% |
| !! | CAGGGTGCTGCAGCGCTGCT+GGG | - | chr1_2:44961990-44962009 | Msa0072240:intron | 70.0% |
| !! | AGGGTGCTGCAGCGCTGCTG+GGG | - | chr1_2:44961991-44962010 | Msa0072240:intron | 70.0% |
| ACGGGTTCGCGGTACGCGAC+AGG | - | chr1_2:44964243-44964262 | Msa0072240:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 44960238 | 44966210 | 44960238 | ID=Msa0072240;Name=Msa0072240 |
| chr1_2 | mRNA | 44960238 | 44966210 | 44960238 | ID=Msa0072240-mRNA-1;Parent=Msa0072240;Name=Msa0072240-mRNA-1;_AED=0.16;_eAED=0.17;_QI=236|0.6|0.83|1|0.4|0.66|6|146|183 |
| chr1_2 | exon | 44960238 | 44960507 | 44960238 | ID=Msa0072240-mRNA-1:exon:13561;Parent=Msa0072240-mRNA-1 |
| chr1_2 | exon | 44961599 | 44961754 | 44961599 | ID=Msa0072240-mRNA-1:exon:13560;Parent=Msa0072240-mRNA-1 |
| chr1_2 | exon | 44963086 | 44963159 | 44963086 | ID=Msa0072240-mRNA-1:exon:13559;Parent=Msa0072240-mRNA-1 |
| chr1_2 | exon | 44963608 | 44963800 | 44963608 | ID=Msa0072240-mRNA-1:exon:13558;Parent=Msa0072240-mRNA-1 |
| chr1_2 | exon | 44965877 | 44965884 | 44965877 | ID=Msa0072240-mRNA-1:exon:13557;Parent=Msa0072240-mRNA-1 |
| chr1_2 | exon | 44965978 | 44966210 | 44965978 | ID=Msa0072240-mRNA-1:exon:13556;Parent=Msa0072240-mRNA-1 |
| chr1_2 | five_prime_UTR | 44965978 | 44966210 | 44965978 | ID=Msa0072240-mRNA-1:five_prime_utr;Parent=Msa0072240-mRNA-1 |
| chr1_2 | five_prime_UTR | 44965882 | 44965884 | 44965882 | ID=Msa0072240-mRNA-1:five_prime_utr;Parent=Msa0072240-mRNA-1 |
| chr1_2 | CDS | 44965877 | 44965881 | 44965877 | ID=Msa0072240-mRNA-1:cds;Parent=Msa0072240-mRNA-1 |
| chr1_2 | CDS | 44963608 | 44963800 | 44963608 | ID=Msa0072240-mRNA-1:cds;Parent=Msa0072240-mRNA-1 |
| chr1_2 | CDS | 44963086 | 44963159 | 44963086 | ID=Msa0072240-mRNA-1:cds;Parent=Msa0072240-mRNA-1 |
| chr1_2 | CDS | 44961599 | 44961754 | 44961599 | ID=Msa0072240-mRNA-1:cds;Parent=Msa0072240-mRNA-1 |
| chr1_2 | CDS | 44960384 | 44960507 | 44960384 | ID=Msa0072240-mRNA-1:cds;Parent=Msa0072240-mRNA-1 |
| chr1_2 | three_prime_UTR | 44960238 | 44960383 | 44960238 | ID=Msa0072240-mRNA-1:three_prime_utr;Parent=Msa0072240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
