AlfalfaGEDB | Msa0930330

M. sativa cultivar zhongmu-4 / Msa0930330

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930330	XP_003631021.1	94.694	490	9	3	1	490	1	473	0.0	946

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930330	sp\|Q9LXU9\|IRKI_ARATH	40.823	316	180	4	160	472	247	558	1.66e-78	258

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001460	Msa0930330	0.841391	4.889179e-58	-8.615850e-47
Msa0001950	Msa0930330	0.828249	9.987110e-55	-8.615850e-47
Msa0003470	Msa0930330	0.910076	2.806035e-82	-8.615850e-47
Msa0004350	Msa0930330	0.845610	3.647324e-59	-8.615850e-47
Msa0004360	Msa0930330	0.816561	5.190409e-52	-8.615850e-47
Msa0005710	Msa0930330	0.813384	2.630840e-51	-8.615850e-47
Msa0006700	Msa0930330	0.802458	5.556464e-49	-8.615850e-47
Msa0007450	Msa0930330	0.858890	6.039338e-63	-8.615850e-47
Msa0008330	Msa0930330	0.822674	2.087296e-53	-8.615850e-47
Msa0008350	Msa0930330	0.807679	4.493569e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930330	MtrunA17_Chr8g0392321	94.694	490	9	3	1	490	1	473	0.0	946
Msa0930330	MtrunA17_Chr2g0329091	35.556	405	232	6	92	472	188	587	4.29e-79	258
Msa0930330	MtrunA17_Chr4g0033061	34.434	424	237	9	79	472	172	584	4.00e-74	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930330	AT1G12330.1	53.926	484	162	12	19	471	19	472	5.98e-171	491
Msa0930330	AT5G12900.1	40.823	316	180	4	160	472	247	558	1.69e-79	258

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Find 90 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTACTCTATTTGGTT+TGG	0.388488	6_2:+79242313	Msa0930330:three_prime_UTR
AAATTGTTGCTATGTTGGGT+TGG	0.545805	6_2:+79241927	Msa0930330:CDS
AAGCTCTTCAAGAAGCTTCA+AGG	0.420955	6_2:+79241327	Msa0930330:CDS
AATACTGCTACTAATGTTGT+TGG	0.374603	6_2:+79241446	Msa0930330:CDS
AATATTATCCGTGACATGTC+AGG	0.397237	6_2:-79240614	None:intergenic
AATCAATGTGTATATTATAT+TGG	0.278120	6_2:+79242385	Msa0930330:three_prime_UTR
AATTGTGGAGAATGGCGTGA+AGG	0.614898	6_2:-79240739	None:intergenic
ACAAAGAAAGCTTGCAGAAG+TGG	0.497139	6_2:-79241968	None:intergenic
ACAATGCAACTTAGACACAC+AGG	0.633999	6_2:+79241596	Msa0930330:CDS
ACAGTACAGTACCGAGGAGG+TGG	0.584764	6_2:-79240584	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTCTTCTACTTCTACTT+TGG	-	chr6_2:79240926-79240945	None:intergenic	30.0%
ATGGATTTGAAAATCCCATT+TGG	-	chr6_2:79241182-79241201	None:intergenic	30.0%
CAAACAACAATGAAGAACAA+TGG	+	chr6_2:79241246-79241265	Msa0930330:CDS	30.0%
CAATGAAGAACAATGGAAAA+TGG	+	chr6_2:79241253-79241272	Msa0930330:CDS	30.0%
AATACTGCTACTAATGTTGT+TGG	+	chr6_2:79241446-79241465	Msa0930330:CDS	30.0%
TAATAGGATATTGAACCCTA+TGG	+	chr6_2:79241778-79241797	Msa0930330:CDS	30.0%
CTTCATTCAACATGATTCAT+GGG	+	chr6_2:79241822-79241841	Msa0930330:CDS	30.0%
AGTGAAATTGTTGCTATGTT+GGG	+	chr6_2:79241923-79241942	Msa0930330:CDS	30.0%
CAACTTTGATTCAGTTTACA+TGG	+	chr6_2:79242075-79242094	Msa0930330:CDS	30.0%
TTTACATGGAAGATATGAGT+GGG	+	chr6_2:79242089-79242108	Msa0930330:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	79240571	79242550	79240571	ID=Msa0930330;Name=Msa0930330
chr6_2	mRNA	79240571	79242550	79240571	ID=Msa0930330-mRNA-1;Parent=Msa0930330;Name=Msa0930330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123\|1\|1\|1\|1\|1\|2\|280\|490
chr6_2	exon	79240571	79240768	79240571	ID=Msa0930330-mRNA-1:exon:13555;Parent=Msa0930330-mRNA-1
chr6_2	exon	79240873	79242550	79240873	ID=Msa0930330-mRNA-1:exon:13556;Parent=Msa0930330-mRNA-1
chr6_2	five_prime_UTR	79240571	79240693	79240571	ID=Msa0930330-mRNA-1:five_prime_utr;Parent=Msa0930330-mRNA-1
chr6_2	CDS	79240694	79240768	79240694	ID=Msa0930330-mRNA-1:cds;Parent=Msa0930330-mRNA-1
chr6_2	CDS	79240873	79242270	79240873	ID=Msa0930330-mRNA-1:cds;Parent=Msa0930330-mRNA-1
chr6_2	three_prime_UTR	79242271	79242550	79242271	ID=Msa0930330-mRNA-1:three_prime_utr;Parent=Msa0930330-mRNA-1

Gene Sequence

>Msa0930330

ATGACTTCTTCTCCTTCTTCTTCTTCCAAATCTCCTCCTTTAATCCCTTCACGCCATTCTCCACAATTCACACCAATTCAAGAGGAACATGAATTTGATGAATACACCAACAGTGAAAACAGAAGCCAAAGTAGAAGTAGAAGAACAACACCAACAAGTGCTTCAACTCCAAAGCATAATCATCATCCACCAACACCAATCAATATCAACAAAAACACAAAACCAAATCACAAGAAAAAACGTTCTGAAACTGAACTAGAAGATGGTTCTGTTTCATGCAACAAATGCAGACCACATTCTCGTGACAAAATCTTCATCCTTCCCTTTGATCATTCCAACAACAACAGCAGTAACAGCAAGTATTCATCTTTGTTGCAAAGTCCAAATGGGATTTTCAAATCCATTGTTTCAAAGCTAACAAGAAAAAGTCCAATGTCAGCATCAACAACAAACAACAATGAAGAACAATGGAAAATGGCAGTAGCAGAACTTTCTCACAAACTTGTTCATGCCACAAGAAAAAGAGATGAAGCTCTTCAAGAAGCTTCAAGGCTCATGAACTCAATGTCAGAGTTAGAGAAAAAGTTGAACAAGCTTGAAATTTATTGTCACACTTTGAAATCTGGTCTTGAAGAATGTAACAATATTAATACTGCTACTAATGTTGTTGGTTCTTCTAATGTTGTTGCTCAGAAGAATTTTCATCATCATGTTCAAGACAATGACAACGTTGTACAACATTTCTTGGTGGCTGTTTCTGAAGCAAGATCTTCAGTGAGACTTCTAAGTCGTTCTTTAACAATGCAACTTAGACACACAGGAAGCAAAGTGTATGAAAAAGTTTCTTTACTTTTACAACCTTATGATATAAAAATCTCTTTTTCAAAGAATCCAAGAAGTTTGCTTTTTTACTTGGAAGCACTTTTGAACAAGACATTTTTTGAGGATTTTGAGTCAATTGGGTTTCAAAAGAATGCTTGTAATAGGATATTGAACCCTATGGAAAGGTGTGAATCAAGTTTTGCTTCATTCAACATGATTCATGGGTTGACTTGGGATGAAGTTTTGAGCAAAGGGACAAGACATTTTAGTGAAGATTTTAGTAGATTTTGTGATAGAAAAATGAGTGAAATTGTTGCTATGTTGGGTTGGAATAGGGCTTGGTCTGAACCACTTCTGCAAGCTTTCTTTGTTGCTTCAAAGAGTGTTTGGATGGTTCATTTGTTGGCTAATTCAGTTCATCCAAGTTTGCCAATTTTTAGAGTTGATAAAGGAGTCAACTTTGATTCAGTTTACATGGAAGATATGAGTGGGGACAAGTCTTCAAGGTTGGTACCAAACATGGTTAGGATTATGGTTGCTCCTGGTTTTTATGTCTATGGTAGTGCTGTTAAATGTAAGGTTCTTTGCAGGTACTTGACCAATAACCTCAGCAACAACAAACAAGACAAAGGTTTAAACCCATCACCTTAA

Protein sequence

>Msa0930330

MTSSPSSSSKSPPLIPSRHSPQFTPIQEEHEFDEYTNSENRSQSRSRRTTPTSASTPKHNHHPPTPININKNTKPNHKKKRSETELEDGSVSCNKCRPHSRDKIFILPFDHSNNNSSNSKYSSLLQSPNGIFKSIVSKLTRKSPMSASTTNNNEEQWKMAVAELSHKLVHATRKRDEALQEASRLMNSMSELEKKLNKLEIYCHTLKSGLEECNNINTATNVVGSSNVVAQKNFHHHVQDNDNVVQHFLVAVSEARSSVRLLSRSLTMQLRHTGSKVYEKVSLLLQPYDIKISFSKNPRSLLFYLEALLNKTFFEDFESIGFQKNACNRILNPMERCESSFASFNMIHGLTWDEVLSKGTRHFSEDFSRFCDRKMSEIVAMLGWNRAWSEPLLQAFFVASKSVWMVHLLANSVHPSLPIFRVDKGVNFDSVYMEDMSGDKSSRLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLTNNLSNNKQDKGLNPSP*