AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930330 MtrunA17_Chr8g0392321 94.694 490 9 3 1 490 1 473 0.0 946
Msa0930330 MtrunA17_Chr2g0329091 35.556 405 232 6 92 472 188 587 4.29e-79 258
Msa0930330 MtrunA17_Chr4g0033061 34.434 424 237 9 79 472 172 584 4.00e-74 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930330 AT1G12330.1 53.926 484 162 12 19 471 19 472 5.98e-171 491
Msa0930330 AT5G12900.1 40.823 316 180 4 160 472 247 558 1.69e-79 258

Find 90 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAAAGTGTACTCTATT+TGG 0.202185 6_2:+79242308 Msa0930330:three_prime_UTR
ACCAAACATGGTTAGGATTA+TGG 0.210083 6_2:+79242132 Msa0930330:CDS
ATATACACATTGATTAAAAT+TGG 0.227786 6_2:-79242377 None:intergenic
TTGGTTTGGAATTTAGAATT+TGG 0.250423 6_2:+79242327 Msa0930330:three_prime_UTR
CAACGTTGTACAACATTTCT+TGG 0.272548 6_2:+79241523 Msa0930330:CDS
AATCAATGTGTATATTATAT+TGG 0.278120 6_2:+79242385 Msa0930330:three_prime_UTR
TTTGTTGTTGCTGAGGTTAT+TGG 0.282756 6_2:-79242218 None:intergenic
TATTGTCACACTTTGAAATC+TGG 0.312009 6_2:+79241401 Msa0930330:CDS
AGGGATTAAAGGAGGAGATT+TGG 0.319288 6_2:-79240719 None:intergenic
TTCAAAAGAATGCTTGTAAT+AGG 0.330527 6_2:+79241762 Msa0930330:CDS
TGCTATGTTGGGTTGGAATA+GGG 0.335899 6_2:+79241934 Msa0930330:CDS
TTGCTATGTTGGGTTGGAAT+AGG 0.340560 6_2:+79241933 Msa0930330:CDS
GGATATGATATGTCGATATA+TGG 0.351949 6_2:+79242484 Msa0930330:three_prime_UTR
GCTTCATTCAACATGATTCA+TGG 0.354899 6_2:+79241821 Msa0930330:CDS
TTAAATGTAAGGTTCTTTGC+AGG 0.355993 6_2:+79242188 Msa0930330:CDS
GCTGTTACTGCTGTTGTTGT+TGG 0.357262 6_2:-79241132 None:intergenic
CAATGAAGAACAATGGAAAA+TGG 0.357639 6_2:+79241253 Msa0930330:CDS
GAATGGCGTGAAGGGATTAA+AGG 0.362757 6_2:-79240730 None:intergenic
TTGTTCTTCTACTTCTACTT+TGG 0.373192 6_2:-79240923 None:intergenic
AATACTGCTACTAATGTTGT+TGG 0.374603 6_2:+79241446 Msa0930330:CDS
ATGGATTTGAAAATCCCATT+TGG 0.381416 6_2:-79241179 None:intergenic
AAAGTGTACTCTATTTGGTT+TGG 0.388488 6_2:+79242313 Msa0930330:three_prime_UTR
GGTTCTATTGTTGTTTATGT+TGG 0.389790 6_2:+79242354 Msa0930330:three_prime_UTR
TTGTTGCTTCAAAGAGTGTT+TGG 0.389896 6_2:+79241987 Msa0930330:CDS
AATATTATCCGTGACATGTC+AGG 0.397237 6_2:-79240614 None:intergenic
TGTTGGGTTGGAATAGGGCT+TGG 0.406333 6_2:+79241939 Msa0930330:CDS
GTATATTATATTGGTGTTGA+TGG 0.412976 6_2:+79242394 Msa0930330:three_prime_UTR
AAGCTCTTCAAGAAGCTTCA+AGG 0.420955 6_2:+79241327 Msa0930330:CDS
CAACTTTGATTCAGTTTACA+TGG 0.421670 6_2:+79242075 Msa0930330:CDS
GGTTGGTACCAAACATGGTT+AGG 0.425331 6_2:+79242125 Msa0930330:CDS
ACCATAATCCTAACCATGTT+TGG 0.426702 6_2:-79242133 None:intergenic
ACTTGATGGGTTTAAGGTGA+TGG 0.428119 6_2:-79242259 None:intergenic
ACATGATTCATGGGTTGACT+TGG 0.437332 6_2:+79241831 Msa0930330:CDS
CTTTGTTGCAAAGTCCAAAT+GGG 0.440057 6_2:+79241165 Msa0930330:CDS
TGTTTGGATGGTTCATTTGT+TGG 0.441093 6_2:+79242003 Msa0930330:CDS
TAATAGGATATTGAACCCTA+TGG 0.449841 6_2:+79241778 Msa0930330:CDS
GTTAGGATTATGGTTGCTCC+TGG 0.452810 6_2:+79242142 Msa0930330:CDS
CTTCATTCAACATGATTCAT+GGG 0.453738 6_2:+79241822 Msa0930330:CDS
TGGAATTTAGAATTTGGATC+AGG 0.454327 6_2:+79242333 Msa0930330:three_prime_UTR
TTTGGAGTTGAAGCACTTGT+TGG 0.456480 6_2:-79240948 None:intergenic
CTTGATGGGTTTAAGGTGAT+GGG 0.456935 6_2:-79242258 None:intergenic
TTGATATTGATTGGTGTTGG+TGG 0.458109 6_2:-79240984 None:intergenic
TCTTTGTTGCAAAGTCCAAA+TGG 0.458726 6_2:+79241164 Msa0930330:CDS
TATATTATATTGGTGTTGAT+GGG 0.465982 6_2:+79242395 Msa0930330:three_prime_UTR
AGTGAAATTGTTGCTATGTT+GGG 0.472103 6_2:+79241923 Msa0930330:CDS
TTGTTGATATTGATTGGTGT+TGG 0.475429 6_2:-79240987 None:intergenic
GAGTGAAATTGTTGCTATGT+TGG 0.475944 6_2:+79241922 Msa0930330:CDS
TTATATTGGTGTTGATGGGT+TGG 0.485131 6_2:+79242399 Msa0930330:three_prime_UTR
GGTGGATGATGATTATGCTT+TGG 0.488526 6_2:-79240966 None:intergenic
CTTGATTCACACCTTTCCAT+AGG 0.488970 6_2:-79241794 None:intergenic
TGGTAGTGCTGTTAAATGTA+AGG 0.493435 6_2:+79242177 Msa0930330:CDS
TTTGTTGTTGATGCTGACAT+TGG 0.496621 6_2:-79241227 None:intergenic
TTGAATGATATGATAATGGT+AGG 0.496723 6_2:-79240641 None:intergenic
ACAAAGAAAGCTTGCAGAAG+TGG 0.497139 6_2:-79241968 None:intergenic
TCTTGTTAGCTTTGAAACAA+TGG 0.500929 6_2:-79241198 None:intergenic
TATCCGTGACATGTCAGGGC+AGG 0.511446 6_2:-79240609 None:intergenic
TTGGGTCAACGTGAACAACT+TGG 0.513386 6_2:+79242513 Msa0930330:three_prime_UTR
CGTTGTACAACATTTCTTGG+TGG 0.514695 6_2:+79241526 Msa0930330:CDS
TTGATTCACACCTTTCCATA+GGG 0.520693 6_2:-79241793 None:intergenic
TTCAAGGTTGGTACCAAACA+TGG 0.524833 6_2:+79242120 Msa0930330:CDS
TGTCTTGTTTGTTGTTGCTG+AGG 0.529272 6_2:-79242225 None:intergenic
TGAGTGGGGACAAGTCTTCA+AGG 0.532792 6_2:+79242104 Msa0930330:CDS
GGAGATTTGGAAGAAGAAGA+AGG 0.534128 6_2:-79240706 None:intergenic
AAATTGTTGCTATGTTGGGT+TGG 0.545805 6_2:+79241927 Msa0930330:CDS
TGCTTCAAAGAGTGTTTGGA+TGG 0.549445 6_2:+79241991 Msa0930330:CDS
ATTAAATATGCAGATTCAAG+AGG 0.551509 6_2:+79240860 Msa0930330:intron
TCTGAAACTGAACTAGAAGA+TGG 0.555922 6_2:+79241041 Msa0930330:CDS
TGGCGTGAAGGGATTAAAGG+AGG 0.561993 6_2:-79240727 None:intergenic
GTTGTTGTTGGAATGATCAA+AGG 0.567800 6_2:-79241120 None:intergenic
TACTAAACTGGTGTGAATTG+TGG 0.581713 6_2:-79240754 None:intergenic
ACAGTACAGTACCGAGGAGG+TGG 0.584764 6_2:-79240584 None:intergenic
TGCCCTGCCCTGACATGTCA+CGG 0.588131 6_2:+79240606 Msa0930330:five_prime_UTR
TTTACATGGAAGATATGAGT+GGG 0.590735 6_2:+79242089 Msa0930330:CDS
ATCCGTGACATGTCAGGGCA+GGG 0.592324 6_2:-79240608 None:intergenic
CATGATTCATGGGTTGACTT+GGG 0.593679 6_2:+79241832 Msa0930330:CDS
ATTGTGGAGAATGGCGTGAA+GGG 0.597358 6_2:-79240738 None:intergenic
GGATATTGAACCCTATGGAA+AGG 0.598272 6_2:+79241783 Msa0930330:CDS
ATATTATCCGTGACATGTCA+GGG 0.601359 6_2:-79240613 None:intergenic
TGGGGACAAGTCTTCAAGGT+TGG 0.602599 6_2:+79242108 Msa0930330:CDS
CTGGTGTGAATTGTGGAGAA+TGG 0.603934 6_2:-79240747 None:intergenic
TTGTTGTTGGAATGATCAAA+GGG 0.606933 6_2:-79241119 None:intergenic
CAAACAACAATGAAGAACAA+TGG 0.609170 6_2:+79241246 Msa0930330:CDS
AATTGTGGAGAATGGCGTGA+AGG 0.614898 6_2:-79240739 None:intergenic
ACAATGCAACTTAGACACAC+AGG 0.633999 6_2:+79241596 Msa0930330:CDS
GTTTACATGGAAGATATGAG+TGG 0.634864 6_2:+79242088 Msa0930330:CDS
TGTTGGAATGATCAAAGGGA+AGG 0.654140 6_2:-79241115 None:intergenic
CAGGGCACAGTACAGTACCG+AGG 0.662777 6_2:-79240590 None:intergenic
AGCAACAACAAACAAGACAA+AGG 0.670945 6_2:+79242229 Msa0930330:CDS
GGCACAGTACAGTACCGAGG+AGG 0.741209 6_2:-79240587 None:intergenic
TTACATGGAAGATATGAGTG+GGG 0.742356 6_2:+79242090 Msa0930330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTGATTTTTAATG+TGG + chr6_2:79242284-79242303 Msa0930330:three_prime_UTR 10.0%
!!! TTTATTTTTGATTTTTAATG+TGG + chr6_2:79242284-79242303 Msa0930330:three_prime_UTR 10.0%
!!! ATTTTTGAATGATATGATAA+TGG - chr6_2:79240648-79240667 None:intergenic 15.0%
!!! AAAGAGATTTTTATATCATA+AGG - chr6_2:79241659-79241678 None:intergenic 15.0%
!! TCAAAAATAAAAAACTTGAT+GGG - chr6_2:79242275-79242294 None:intergenic 15.0%
!! ATCAAAAATAAAAAACTTGA+TGG - chr6_2:79242276-79242295 None:intergenic 15.0%
!!! ATATACACATTGATTAAAAT+TGG - chr6_2:79242380-79242399 None:intergenic 15.0%
!! AATCAATGTGTATATTATAT+TGG + chr6_2:79242385-79242404 Msa0930330:three_prime_UTR 15.0%
!!! ATTTTTGAATGATATGATAA+TGG - chr6_2:79240648-79240667 None:intergenic 15.0%
!!! AAAGAGATTTTTATATCATA+AGG - chr6_2:79241659-79241678 None:intergenic 15.0%
!! TCAAAAATAAAAAACTTGAT+GGG - chr6_2:79242275-79242294 None:intergenic 15.0%
!! ATCAAAAATAAAAAACTTGA+TGG - chr6_2:79242276-79242295 None:intergenic 15.0%
!!! ATATACACATTGATTAAAAT+TGG - chr6_2:79242380-79242399 None:intergenic 15.0%
!! AATCAATGTGTATATTATAT+TGG + chr6_2:79242385-79242404 Msa0930330:three_prime_UTR 15.0%
!!! TTTGATTTTTAATGTGGAAT+TGG + chr6_2:79242290-79242309 Msa0930330:three_prime_UTR 20.0%
!!! TATATTATATTGGTGTTGAT+GGG + chr6_2:79242395-79242414 Msa0930330:three_prime_UTR 20.0%
!!! TTTGATTTTTAATGTGGAAT+TGG + chr6_2:79242290-79242309 Msa0930330:three_prime_UTR 20.0%
!!! TATATTATATTGGTGTTGAT+GGG + chr6_2:79242395-79242414 Msa0930330:three_prime_UTR 20.0%
!!! TTGAATGATATGATAATGGT+AGG - chr6_2:79240644-79240663 None:intergenic 25.0%
!!! AGTCATTTTTGAGAGATAAT+TGG - chr6_2:79240680-79240699 None:intergenic 25.0%
! GTATGAAAATGTTACTAAAC+TGG - chr6_2:79240769-79240788 None:intergenic 25.0%
! ATTAAATATGCAGATTCAAG+AGG + chr6_2:79240860-79240879 Msa0930330:intron 25.0%
!!! GTGTTTTTGTTGATATTGAT+TGG - chr6_2:79240996-79241015 None:intergenic 25.0%
! AAGTAAAAAAGCAAACTTCT+TGG - chr6_2:79241692-79241711 None:intergenic 25.0%
!!! AAGAAGTTTGCTTTTTTACT+TGG + chr6_2:79241691-79241710 Msa0930330:CDS 25.0%
!!! TTTGAACAAGACATTTTTTG+AGG + chr6_2:79241721-79241740 Msa0930330:CDS 25.0%
! TTCAAAAGAATGCTTGTAAT+AGG + chr6_2:79241762-79241781 Msa0930330:CDS 25.0%
!! CCTTTATCAACTCTAAAAAT+TGG - chr6_2:79242052-79242071 None:intergenic 25.0%
!!! CCAATTTTTAGAGTTGATAA+AGG + chr6_2:79242049-79242068 Msa0930330:CDS 25.0%
!!! TAAAAAACTTGATGGGTTTA+AGG - chr6_2:79242268-79242287 None:intergenic 25.0%
!!! TTGGTTTGGAATTTAGAATT+TGG + chr6_2:79242327-79242346 Msa0930330:three_prime_UTR 25.0%
!!! GTATATTATATTGGTGTTGA+TGG + chr6_2:79242394-79242413 Msa0930330:three_prime_UTR 25.0%
!!! TTGAATGATATGATAATGGT+AGG - chr6_2:79240644-79240663 None:intergenic 25.0%
!!! AGTCATTTTTGAGAGATAAT+TGG - chr6_2:79240680-79240699 None:intergenic 25.0%
! GTATGAAAATGTTACTAAAC+TGG - chr6_2:79240769-79240788 None:intergenic 25.0%
! ATTAAATATGCAGATTCAAG+AGG + chr6_2:79240860-79240879 Msa0930330:intron 25.0%
!!! GTGTTTTTGTTGATATTGAT+TGG - chr6_2:79240996-79241015 None:intergenic 25.0%
! AAGTAAAAAAGCAAACTTCT+TGG - chr6_2:79241692-79241711 None:intergenic 25.0%
!!! AAGAAGTTTGCTTTTTTACT+TGG + chr6_2:79241691-79241710 Msa0930330:CDS 25.0%
!!! TTTGAACAAGACATTTTTTG+AGG + chr6_2:79241721-79241740 Msa0930330:CDS 25.0%
! TTCAAAAGAATGCTTGTAAT+AGG + chr6_2:79241762-79241781 Msa0930330:CDS 25.0%
!! CCTTTATCAACTCTAAAAAT+TGG - chr6_2:79242052-79242071 None:intergenic 25.0%
!!! CCAATTTTTAGAGTTGATAA+AGG + chr6_2:79242049-79242068 Msa0930330:CDS 25.0%
!!! TAAAAAACTTGATGGGTTTA+AGG - chr6_2:79242268-79242287 None:intergenic 25.0%
!!! TTGGTTTGGAATTTAGAATT+TGG + chr6_2:79242327-79242346 Msa0930330:three_prime_UTR 25.0%
!!! GTATATTATATTGGTGTTGA+TGG + chr6_2:79242394-79242413 Msa0930330:three_prime_UTR 25.0%
!! CATTTTTGAGAGATAATTGG+TGG - chr6_2:79240677-79240696 None:intergenic 30.0%
TTGTTCTTCTACTTCTACTT+TGG - chr6_2:79240926-79240945 None:intergenic 30.0%
! TTGTTGATATTGATTGGTGT+TGG - chr6_2:79240990-79241009 None:intergenic 30.0%
!!! GAACGTTTTTTCTTGTGATT+TGG - chr6_2:79241023-79241042 None:intergenic 30.0%
! TTGTTGTTGGAATGATCAAA+GGG - chr6_2:79241122-79241141 None:intergenic 30.0%
ATGGATTTGAAAATCCCATT+TGG - chr6_2:79241182-79241201 None:intergenic 30.0%
!! TCTTGTTAGCTTTGAAACAA+TGG - chr6_2:79241201-79241220 None:intergenic 30.0%
CAAACAACAATGAAGAACAA+TGG + chr6_2:79241246-79241265 Msa0930330:CDS 30.0%
CAATGAAGAACAATGGAAAA+TGG + chr6_2:79241253-79241272 Msa0930330:CDS 30.0%
!! TATTGTCACACTTTGAAATC+TGG + chr6_2:79241401-79241420 Msa0930330:CDS 30.0%
AATACTGCTACTAATGTTGT+TGG + chr6_2:79241446-79241465 Msa0930330:CDS 30.0%
!! TTTGAGGATTTTGAGTCAAT+TGG + chr6_2:79241737-79241756 Msa0930330:CDS 30.0%
!! TTGAGGATTTTGAGTCAATT+GGG + chr6_2:79241738-79241757 Msa0930330:CDS 30.0%
TAATAGGATATTGAACCCTA+TGG + chr6_2:79241778-79241797 Msa0930330:CDS 30.0%
CTTCATTCAACATGATTCAT+GGG + chr6_2:79241822-79241841 Msa0930330:CDS 30.0%
AGTGAAATTGTTGCTATGTT+GGG + chr6_2:79241923-79241942 Msa0930330:CDS 30.0%
! ACTCTAAAAATTGGCAAACT+TGG - chr6_2:79242043-79242062 None:intergenic 30.0%
CAACTTTGATTCAGTTTACA+TGG + chr6_2:79242075-79242094 Msa0930330:CDS 30.0%
TTTACATGGAAGATATGAGT+GGG + chr6_2:79242089-79242108 Msa0930330:CDS 30.0%
TTAAATGTAAGGTTCTTTGC+AGG + chr6_2:79242188-79242207 Msa0930330:CDS 30.0%
! ATTGGAAAGTGTACTCTATT+TGG + chr6_2:79242308-79242327 Msa0930330:three_prime_UTR 30.0%
AAAGTGTACTCTATTTGGTT+TGG + chr6_2:79242313-79242332 Msa0930330:three_prime_UTR 30.0%
! TGGAATTTAGAATTTGGATC+AGG + chr6_2:79242333-79242352 Msa0930330:three_prime_UTR 30.0%
!! GGTTCTATTGTTGTTTATGT+TGG + chr6_2:79242354-79242373 Msa0930330:three_prime_UTR 30.0%
! TGTATTTTTCATGCTTGAGT+TGG + chr6_2:79242462-79242481 Msa0930330:three_prime_UTR 30.0%
! GTATTTTTCATGCTTGAGTT+GGG + chr6_2:79242463-79242482 Msa0930330:three_prime_UTR 30.0%
GGATATGATATGTCGATATA+TGG + chr6_2:79242484-79242503 Msa0930330:three_prime_UTR 30.0%
!!! TGTCGATATATGGAGTTTTT+TGG + chr6_2:79242494-79242513 Msa0930330:three_prime_UTR 30.0%
!!! GTCGATATATGGAGTTTTTT+GGG + chr6_2:79242495-79242514 Msa0930330:three_prime_UTR 30.0%
!! CATTTTTGAGAGATAATTGG+TGG - chr6_2:79240677-79240696 None:intergenic 30.0%
TTGTTCTTCTACTTCTACTT+TGG - chr6_2:79240926-79240945 None:intergenic 30.0%
! TTGTTGATATTGATTGGTGT+TGG - chr6_2:79240990-79241009 None:intergenic 30.0%
!!! GAACGTTTTTTCTTGTGATT+TGG - chr6_2:79241023-79241042 None:intergenic 30.0%
! TTGTTGTTGGAATGATCAAA+GGG - chr6_2:79241122-79241141 None:intergenic 30.0%
ATGGATTTGAAAATCCCATT+TGG - chr6_2:79241182-79241201 None:intergenic 30.0%
!! TCTTGTTAGCTTTGAAACAA+TGG - chr6_2:79241201-79241220 None:intergenic 30.0%
CAAACAACAATGAAGAACAA+TGG + chr6_2:79241246-79241265 Msa0930330:CDS 30.0%
CAATGAAGAACAATGGAAAA+TGG + chr6_2:79241253-79241272 Msa0930330:CDS 30.0%
!! TATTGTCACACTTTGAAATC+TGG + chr6_2:79241401-79241420 Msa0930330:CDS 30.0%
AATACTGCTACTAATGTTGT+TGG + chr6_2:79241446-79241465 Msa0930330:CDS 30.0%
!! TTTGAGGATTTTGAGTCAAT+TGG + chr6_2:79241737-79241756 Msa0930330:CDS 30.0%
!! TTGAGGATTTTGAGTCAATT+GGG + chr6_2:79241738-79241757 Msa0930330:CDS 30.0%
TAATAGGATATTGAACCCTA+TGG + chr6_2:79241778-79241797 Msa0930330:CDS 30.0%
CTTCATTCAACATGATTCAT+GGG + chr6_2:79241822-79241841 Msa0930330:CDS 30.0%
AGTGAAATTGTTGCTATGTT+GGG + chr6_2:79241923-79241942 Msa0930330:CDS 30.0%
! ACTCTAAAAATTGGCAAACT+TGG - chr6_2:79242043-79242062 None:intergenic 30.0%
CAACTTTGATTCAGTTTACA+TGG + chr6_2:79242075-79242094 Msa0930330:CDS 30.0%
TTTACATGGAAGATATGAGT+GGG + chr6_2:79242089-79242108 Msa0930330:CDS 30.0%
TTAAATGTAAGGTTCTTTGC+AGG + chr6_2:79242188-79242207 Msa0930330:CDS 30.0%
! ATTGGAAAGTGTACTCTATT+TGG + chr6_2:79242308-79242327 Msa0930330:three_prime_UTR 30.0%
AAAGTGTACTCTATTTGGTT+TGG + chr6_2:79242313-79242332 Msa0930330:three_prime_UTR 30.0%
! TGGAATTTAGAATTTGGATC+AGG + chr6_2:79242333-79242352 Msa0930330:three_prime_UTR 30.0%
!! GGTTCTATTGTTGTTTATGT+TGG + chr6_2:79242354-79242373 Msa0930330:three_prime_UTR 30.0%
! TGTATTTTTCATGCTTGAGT+TGG + chr6_2:79242462-79242481 Msa0930330:three_prime_UTR 30.0%
! GTATTTTTCATGCTTGAGTT+GGG + chr6_2:79242463-79242482 Msa0930330:three_prime_UTR 30.0%
GGATATGATATGTCGATATA+TGG + chr6_2:79242484-79242503 Msa0930330:three_prime_UTR 30.0%
!!! TGTCGATATATGGAGTTTTT+TGG + chr6_2:79242494-79242513 Msa0930330:three_prime_UTR 30.0%
!!! GTCGATATATGGAGTTTTTT+GGG + chr6_2:79242495-79242514 Msa0930330:three_prime_UTR 30.0%
ATATTATCCGTGACATGTCA+GGG - chr6_2:79240616-79240635 None:intergenic 35.0%
AATATTATCCGTGACATGTC+AGG - chr6_2:79240617-79240636 None:intergenic 35.0%
TACTAAACTGGTGTGAATTG+TGG - chr6_2:79240757-79240776 None:intergenic 35.0%
!! TTGATATTGATTGGTGTTGG+TGG - chr6_2:79240987-79241006 None:intergenic 35.0%
! TCTGAAACTGAACTAGAAGA+TGG + chr6_2:79241041-79241060 Msa0930330:CDS 35.0%
! AAGATTTTGTCACGAGAATG+TGG - chr6_2:79241092-79241111 None:intergenic 35.0%
! GTTGTTGTTGGAATGATCAA+AGG - chr6_2:79241123-79241142 None:intergenic 35.0%
TCTTTGTTGCAAAGTCCAAA+TGG + chr6_2:79241164-79241183 Msa0930330:CDS 35.0%
CTTTGTTGCAAAGTCCAAAT+GGG + chr6_2:79241165-79241184 Msa0930330:CDS 35.0%
!! TTTGTTGTTGATGCTGACAT+TGG - chr6_2:79241230-79241249 None:intergenic 35.0%
! AGCTTCATCTCTTTTTCTTG+TGG - chr6_2:79241312-79241331 None:intergenic 35.0%
CAACGTTGTACAACATTTCT+TGG + chr6_2:79241523-79241542 Msa0930330:CDS 35.0%
TTGATTCACACCTTTCCATA+GGG - chr6_2:79241796-79241815 None:intergenic 35.0%
GCTTCATTCAACATGATTCA+TGG + chr6_2:79241821-79241840 Msa0930330:CDS 35.0%
GAGTGAAATTGTTGCTATGT+TGG + chr6_2:79241922-79241941 Msa0930330:CDS 35.0%
AAATTGTTGCTATGTTGGGT+TGG + chr6_2:79241927-79241946 Msa0930330:CDS 35.0%
!! TTGTTGCTTCAAAGAGTGTT+TGG + chr6_2:79241987-79242006 Msa0930330:CDS 35.0%
TGTTTGGATGGTTCATTTGT+TGG + chr6_2:79242003-79242022 Msa0930330:CDS 35.0%
GTTTACATGGAAGATATGAG+TGG + chr6_2:79242088-79242107 Msa0930330:CDS 35.0%
TTACATGGAAGATATGAGTG+GGG + chr6_2:79242090-79242109 Msa0930330:CDS 35.0%
ACCAAACATGGTTAGGATTA+TGG + chr6_2:79242132-79242151 Msa0930330:CDS 35.0%
ACCATAATCCTAACCATGTT+TGG - chr6_2:79242136-79242155 None:intergenic 35.0%
CTACCATAGACATAAAAACC+AGG - chr6_2:79242163-79242182 None:intergenic 35.0%
! TGGTAGTGCTGTTAAATGTA+AGG + chr6_2:79242177-79242196 Msa0930330:CDS 35.0%
!! TTTGTTGTTGCTGAGGTTAT+TGG - chr6_2:79242221-79242240 None:intergenic 35.0%
AGCAACAACAAACAAGACAA+AGG + chr6_2:79242229-79242248 Msa0930330:CDS 35.0%
!! TTATATTGGTGTTGATGGGT+TGG + chr6_2:79242399-79242418 Msa0930330:three_prime_UTR 35.0%
ATATTATCCGTGACATGTCA+GGG - chr6_2:79240616-79240635 None:intergenic 35.0%
AATATTATCCGTGACATGTC+AGG - chr6_2:79240617-79240636 None:intergenic 35.0%
TACTAAACTGGTGTGAATTG+TGG - chr6_2:79240757-79240776 None:intergenic 35.0%
!! TTGATATTGATTGGTGTTGG+TGG - chr6_2:79240987-79241006 None:intergenic 35.0%
! TCTGAAACTGAACTAGAAGA+TGG + chr6_2:79241041-79241060 Msa0930330:CDS 35.0%
! AAGATTTTGTCACGAGAATG+TGG - chr6_2:79241092-79241111 None:intergenic 35.0%
! GTTGTTGTTGGAATGATCAA+AGG - chr6_2:79241123-79241142 None:intergenic 35.0%
TCTTTGTTGCAAAGTCCAAA+TGG + chr6_2:79241164-79241183 Msa0930330:CDS 35.0%
CTTTGTTGCAAAGTCCAAAT+GGG + chr6_2:79241165-79241184 Msa0930330:CDS 35.0%
!! TTTGTTGTTGATGCTGACAT+TGG - chr6_2:79241230-79241249 None:intergenic 35.0%
! AGCTTCATCTCTTTTTCTTG+TGG - chr6_2:79241312-79241331 None:intergenic 35.0%
CAACGTTGTACAACATTTCT+TGG + chr6_2:79241523-79241542 Msa0930330:CDS 35.0%
TTGATTCACACCTTTCCATA+GGG - chr6_2:79241796-79241815 None:intergenic 35.0%
GCTTCATTCAACATGATTCA+TGG + chr6_2:79241821-79241840 Msa0930330:CDS 35.0%
GAGTGAAATTGTTGCTATGT+TGG + chr6_2:79241922-79241941 Msa0930330:CDS 35.0%
AAATTGTTGCTATGTTGGGT+TGG + chr6_2:79241927-79241946 Msa0930330:CDS 35.0%
!! TTGTTGCTTCAAAGAGTGTT+TGG + chr6_2:79241987-79242006 Msa0930330:CDS 35.0%
TGTTTGGATGGTTCATTTGT+TGG + chr6_2:79242003-79242022 Msa0930330:CDS 35.0%
GTTTACATGGAAGATATGAG+TGG + chr6_2:79242088-79242107 Msa0930330:CDS 35.0%
TTACATGGAAGATATGAGTG+GGG + chr6_2:79242090-79242109 Msa0930330:CDS 35.0%
ACCAAACATGGTTAGGATTA+TGG + chr6_2:79242132-79242151 Msa0930330:CDS 35.0%
ACCATAATCCTAACCATGTT+TGG - chr6_2:79242136-79242155 None:intergenic 35.0%
CTACCATAGACATAAAAACC+AGG - chr6_2:79242163-79242182 None:intergenic 35.0%
! TGGTAGTGCTGTTAAATGTA+AGG + chr6_2:79242177-79242196 Msa0930330:CDS 35.0%
!! TTTGTTGTTGCTGAGGTTAT+TGG - chr6_2:79242221-79242240 None:intergenic 35.0%
AGCAACAACAAACAAGACAA+AGG + chr6_2:79242229-79242248 Msa0930330:CDS 35.0%
!! TTATATTGGTGTTGATGGGT+TGG + chr6_2:79242399-79242418 Msa0930330:three_prime_UTR 35.0%
!!! TTTTTTTTGGACCACCTCCT+CGG + chr6_2:79240573-79240592 Msa0930330:five_prime_UTR 40.0%
GGAGATTTGGAAGAAGAAGA+AGG - chr6_2:79240709-79240728 None:intergenic 40.0%
AGGGATTAAAGGAGGAGATT+TGG - chr6_2:79240722-79240741 None:intergenic 40.0%
! TTGGCTTCTGTTTTCACTGT+TGG - chr6_2:79240907-79240926 None:intergenic 40.0%
! TTTGGAGTTGAAGCACTTGT+TGG - chr6_2:79240951-79240970 None:intergenic 40.0%
GGTGGATGATGATTATGCTT+TGG - chr6_2:79240969-79240988 None:intergenic 40.0%
TGTTGGAATGATCAAAGGGA+AGG - chr6_2:79241118-79241137 None:intergenic 40.0%
AAGCTCTTCAAGAAGCTTCA+AGG + chr6_2:79241327-79241346 Msa0930330:CDS 40.0%
CGTTGTACAACATTTCTTGG+TGG + chr6_2:79241526-79241545 Msa0930330:CDS 40.0%
ACAATGCAACTTAGACACAC+AGG + chr6_2:79241596-79241615 Msa0930330:CDS 40.0%
GGATATTGAACCCTATGGAA+AGG + chr6_2:79241783-79241802 Msa0930330:CDS 40.0%
CTTGATTCACACCTTTCCAT+AGG - chr6_2:79241797-79241816 None:intergenic 40.0%
! ACATGATTCATGGGTTGACT+TGG + chr6_2:79241831-79241850 Msa0930330:CDS 40.0%
! CATGATTCATGGGTTGACTT+GGG + chr6_2:79241832-79241851 Msa0930330:CDS 40.0%
!!! TGGGATGAAGTTTTGAGCAA+AGG + chr6_2:79241851-79241870 Msa0930330:CDS 40.0%
!!! GGGATGAAGTTTTGAGCAAA+GGG + chr6_2:79241852-79241871 Msa0930330:CDS 40.0%
!! TTGCTATGTTGGGTTGGAAT+AGG + chr6_2:79241933-79241952 Msa0930330:CDS 40.0%
!! TGCTATGTTGGGTTGGAATA+GGG + chr6_2:79241934-79241953 Msa0930330:CDS 40.0%
ACAAAGAAAGCTTGCAGAAG+TGG - chr6_2:79241971-79241990 None:intergenic 40.0%
!! TGCTTCAAAGAGTGTTTGGA+TGG + chr6_2:79241991-79242010 Msa0930330:CDS 40.0%
!! TTCAAGGTTGGTACCAAACA+TGG + chr6_2:79242120-79242139 Msa0930330:CDS 40.0%
!! GCTCCTGGTTTTTATGTCTA+TGG + chr6_2:79242157-79242176 Msa0930330:CDS 40.0%
!! TGTCTTGTTTGTTGTTGCTG+AGG - chr6_2:79242228-79242247 None:intergenic 40.0%
!! CTTGATGGGTTTAAGGTGAT+GGG - chr6_2:79242261-79242280 None:intergenic 40.0%
!! ACTTGATGGGTTTAAGGTGA+TGG - chr6_2:79242262-79242281 None:intergenic 40.0%
! GTGAACAACTTGGCATTTTC+TGG + chr6_2:79242523-79242542 Msa0930330:three_prime_UTR 40.0%
GGAGGTGGTCCAAAAAAAAT+TGG - chr6_2:79240572-79240591 None:intergenic 40.0%
!!! TTTTTTTTGGACCACCTCCT+CGG + chr6_2:79240573-79240592 Msa0930330:five_prime_UTR 40.0%
GGAGATTTGGAAGAAGAAGA+AGG - chr6_2:79240709-79240728 None:intergenic 40.0%
AGGGATTAAAGGAGGAGATT+TGG - chr6_2:79240722-79240741 None:intergenic 40.0%
! TTGGCTTCTGTTTTCACTGT+TGG - chr6_2:79240907-79240926 None:intergenic 40.0%
! TTTGGAGTTGAAGCACTTGT+TGG - chr6_2:79240951-79240970 None:intergenic 40.0%
GGTGGATGATGATTATGCTT+TGG - chr6_2:79240969-79240988 None:intergenic 40.0%
TGTTGGAATGATCAAAGGGA+AGG - chr6_2:79241118-79241137 None:intergenic 40.0%
AAGCTCTTCAAGAAGCTTCA+AGG + chr6_2:79241327-79241346 Msa0930330:CDS 40.0%
CGTTGTACAACATTTCTTGG+TGG + chr6_2:79241526-79241545 Msa0930330:CDS 40.0%
ACAATGCAACTTAGACACAC+AGG + chr6_2:79241596-79241615 Msa0930330:CDS 40.0%
GGATATTGAACCCTATGGAA+AGG + chr6_2:79241783-79241802 Msa0930330:CDS 40.0%
CTTGATTCACACCTTTCCAT+AGG - chr6_2:79241797-79241816 None:intergenic 40.0%
! ACATGATTCATGGGTTGACT+TGG + chr6_2:79241831-79241850 Msa0930330:CDS 40.0%
! CATGATTCATGGGTTGACTT+GGG + chr6_2:79241832-79241851 Msa0930330:CDS 40.0%
!!! TGGGATGAAGTTTTGAGCAA+AGG + chr6_2:79241851-79241870 Msa0930330:CDS 40.0%
!!! GGGATGAAGTTTTGAGCAAA+GGG + chr6_2:79241852-79241871 Msa0930330:CDS 40.0%
!! TTGCTATGTTGGGTTGGAAT+AGG + chr6_2:79241933-79241952 Msa0930330:CDS 40.0%
!! TGCTATGTTGGGTTGGAATA+GGG + chr6_2:79241934-79241953 Msa0930330:CDS 40.0%
ACAAAGAAAGCTTGCAGAAG+TGG - chr6_2:79241971-79241990 None:intergenic 40.0%
!! TGCTTCAAAGAGTGTTTGGA+TGG + chr6_2:79241991-79242010 Msa0930330:CDS 40.0%
!! TTCAAGGTTGGTACCAAACA+TGG + chr6_2:79242120-79242139 Msa0930330:CDS 40.0%
!! GCTCCTGGTTTTTATGTCTA+TGG + chr6_2:79242157-79242176 Msa0930330:CDS 40.0%
!! TGTCTTGTTTGTTGTTGCTG+AGG - chr6_2:79242228-79242247 None:intergenic 40.0%
!! CTTGATGGGTTTAAGGTGAT+GGG - chr6_2:79242261-79242280 None:intergenic 40.0%
!! ACTTGATGGGTTTAAGGTGA+TGG - chr6_2:79242262-79242281 None:intergenic 40.0%
! GTGAACAACTTGGCATTTTC+TGG + chr6_2:79242523-79242542 Msa0930330:three_prime_UTR 40.0%
GAATGGCGTGAAGGGATTAA+AGG - chr6_2:79240733-79240752 None:intergenic 45.0%
ATTGTGGAGAATGGCGTGAA+GGG - chr6_2:79240741-79240760 None:intergenic 45.0%
AATTGTGGAGAATGGCGTGA+AGG - chr6_2:79240742-79240761 None:intergenic 45.0%
CTGGTGTGAATTGTGGAGAA+TGG - chr6_2:79240750-79240769 None:intergenic 45.0%
GCTGTTACTGCTGTTGTTGT+TGG - chr6_2:79241135-79241154 None:intergenic 45.0%
! GGTTGGTACCAAACATGGTT+AGG + chr6_2:79242125-79242144 Msa0930330:CDS 45.0%
GTTAGGATTATGGTTGCTCC+TGG + chr6_2:79242142-79242161 Msa0930330:CDS 45.0%
TTGGGTCAACGTGAACAACT+TGG + chr6_2:79242513-79242532 Msa0930330:three_prime_UTR 45.0%
GAATGGCGTGAAGGGATTAA+AGG - chr6_2:79240733-79240752 None:intergenic 45.0%
ATTGTGGAGAATGGCGTGAA+GGG - chr6_2:79240741-79240760 None:intergenic 45.0%
AATTGTGGAGAATGGCGTGA+AGG - chr6_2:79240742-79240761 None:intergenic 45.0%
CTGGTGTGAATTGTGGAGAA+TGG - chr6_2:79240750-79240769 None:intergenic 45.0%
GCTGTTACTGCTGTTGTTGT+TGG - chr6_2:79241135-79241154 None:intergenic 45.0%
! GGTTGGTACCAAACATGGTT+AGG + chr6_2:79242125-79242144 Msa0930330:CDS 45.0%
GTTAGGATTATGGTTGCTCC+TGG + chr6_2:79242142-79242161 Msa0930330:CDS 45.0%
TTGGGTCAACGTGAACAACT+TGG + chr6_2:79242513-79242532 Msa0930330:three_prime_UTR 45.0%
!!! ATTTTATTTTTTTTATCATA+TGG + chr6_2:79240816-79240835 Msa0930330:intron 5.0%
!!! ATTTTATTTTTTTTATCATA+TGG + chr6_2:79240816-79240835 Msa0930330:intron 5.0%
TGGCGTGAAGGGATTAAAGG+AGG - chr6_2:79240730-79240749 None:intergenic 50.0%
!! TGTTGGGTTGGAATAGGGCT+TGG + chr6_2:79241939-79241958 Msa0930330:CDS 50.0%
TGAGTGGGGACAAGTCTTCA+AGG + chr6_2:79242104-79242123 Msa0930330:CDS 50.0%
TGGGGACAAGTCTTCAAGGT+TGG + chr6_2:79242108-79242127 Msa0930330:CDS 50.0%
TGGCGTGAAGGGATTAAAGG+AGG - chr6_2:79240730-79240749 None:intergenic 50.0%
!! TGTTGGGTTGGAATAGGGCT+TGG + chr6_2:79241939-79241958 Msa0930330:CDS 50.0%
TGAGTGGGGACAAGTCTTCA+AGG + chr6_2:79242104-79242123 Msa0930330:CDS 50.0%
TGGGGACAAGTCTTCAAGGT+TGG + chr6_2:79242108-79242127 Msa0930330:CDS 50.0%
! ACAGTACAGTACCGAGGAGG+TGG - chr6_2:79240587-79240606 None:intergenic 55.0%
ATCCGTGACATGTCAGGGCA+GGG - chr6_2:79240611-79240630 None:intergenic 55.0%
TATCCGTGACATGTCAGGGC+AGG - chr6_2:79240612-79240631 None:intergenic 55.0%
! ACAGTACAGTACCGAGGAGG+TGG - chr6_2:79240587-79240606 None:intergenic 55.0%
ATCCGTGACATGTCAGGGCA+GGG - chr6_2:79240611-79240630 None:intergenic 55.0%
TATCCGTGACATGTCAGGGC+AGG - chr6_2:79240612-79240631 None:intergenic 55.0%
! GGCACAGTACAGTACCGAGG+AGG - chr6_2:79240590-79240609 None:intergenic 60.0%
CAGGGCACAGTACAGTACCG+AGG - chr6_2:79240593-79240612 None:intergenic 60.0%
TGCCCTGCCCTGACATGTCA+CGG + chr6_2:79240606-79240625 Msa0930330:five_prime_UTR 60.0%
! GGCACAGTACAGTACCGAGG+AGG - chr6_2:79240590-79240609 None:intergenic 60.0%
CAGGGCACAGTACAGTACCG+AGG - chr6_2:79240593-79240612 None:intergenic 60.0%
TGCCCTGCCCTGACATGTCA+CGG + chr6_2:79240606-79240625 Msa0930330:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79240571 79242550 79240571 ID=Msa0930330;Name=Msa0930330
chr6_2 mRNA 79240571 79242550 79240571 ID=Msa0930330-mRNA-1;Parent=Msa0930330;Name=Msa0930330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123|1|1|1|1|1|2|280|490
chr6_2 exon 79240571 79240768 79240571 ID=Msa0930330-mRNA-1:exon:13555;Parent=Msa0930330-mRNA-1
chr6_2 exon 79240873 79242550 79240873 ID=Msa0930330-mRNA-1:exon:13556;Parent=Msa0930330-mRNA-1
chr6_2 five_prime_UTR 79240571 79240693 79240571 ID=Msa0930330-mRNA-1:five_prime_utr;Parent=Msa0930330-mRNA-1
chr6_2 CDS 79240694 79240768 79240694 ID=Msa0930330-mRNA-1:cds;Parent=Msa0930330-mRNA-1
chr6_2 CDS 79240873 79242270 79240873 ID=Msa0930330-mRNA-1:cds;Parent=Msa0930330-mRNA-1
chr6_2 three_prime_UTR 79242271 79242550 79242271 ID=Msa0930330-mRNA-1:three_prime_utr;Parent=Msa0930330-mRNA-1
Gene Sequence

>Msa0930330

ATGACTTCTTCTCCTTCTTCTTCTTCCAAATCTCCTCCTTTAATCCCTTCACGCCATTCTCCACAATTCACACCAATTCAAGAGGAACATGAATTTGATGAATACACCAACAGTGAAAACAGAAGCCAAAGTAGAAGTAGAAGAACAACACCAACAAGTGCTTCAACTCCAAAGCATAATCATCATCCACCAACACCAATCAATATCAACAAAAACACAAAACCAAATCACAAGAAAAAACGTTCTGAAACTGAACTAGAAGATGGTTCTGTTTCATGCAACAAATGCAGACCACATTCTCGTGACAAAATCTTCATCCTTCCCTTTGATCATTCCAACAACAACAGCAGTAACAGCAAGTATTCATCTTTGTTGCAAAGTCCAAATGGGATTTTCAAATCCATTGTTTCAAAGCTAACAAGAAAAAGTCCAATGTCAGCATCAACAACAAACAACAATGAAGAACAATGGAAAATGGCAGTAGCAGAACTTTCTCACAAACTTGTTCATGCCACAAGAAAAAGAGATGAAGCTCTTCAAGAAGCTTCAAGGCTCATGAACTCAATGTCAGAGTTAGAGAAAAAGTTGAACAAGCTTGAAATTTATTGTCACACTTTGAAATCTGGTCTTGAAGAATGTAACAATATTAATACTGCTACTAATGTTGTTGGTTCTTCTAATGTTGTTGCTCAGAAGAATTTTCATCATCATGTTCAAGACAATGACAACGTTGTACAACATTTCTTGGTGGCTGTTTCTGAAGCAAGATCTTCAGTGAGACTTCTAAGTCGTTCTTTAACAATGCAACTTAGACACACAGGAAGCAAAGTGTATGAAAAAGTTTCTTTACTTTTACAACCTTATGATATAAAAATCTCTTTTTCAAAGAATCCAAGAAGTTTGCTTTTTTACTTGGAAGCACTTTTGAACAAGACATTTTTTGAGGATTTTGAGTCAATTGGGTTTCAAAAGAATGCTTGTAATAGGATATTGAACCCTATGGAAAGGTGTGAATCAAGTTTTGCTTCATTCAACATGATTCATGGGTTGACTTGGGATGAAGTTTTGAGCAAAGGGACAAGACATTTTAGTGAAGATTTTAGTAGATTTTGTGATAGAAAAATGAGTGAAATTGTTGCTATGTTGGGTTGGAATAGGGCTTGGTCTGAACCACTTCTGCAAGCTTTCTTTGTTGCTTCAAAGAGTGTTTGGATGGTTCATTTGTTGGCTAATTCAGTTCATCCAAGTTTGCCAATTTTTAGAGTTGATAAAGGAGTCAACTTTGATTCAGTTTACATGGAAGATATGAGTGGGGACAAGTCTTCAAGGTTGGTACCAAACATGGTTAGGATTATGGTTGCTCCTGGTTTTTATGTCTATGGTAGTGCTGTTAAATGTAAGGTTCTTTGCAGGTACTTGACCAATAACCTCAGCAACAACAAACAAGACAAAGGTTTAAACCCATCACCTTAA

Protein sequence

>Msa0930330

MTSSPSSSSKSPPLIPSRHSPQFTPIQEEHEFDEYTNSENRSQSRSRRTTPTSASTPKHNHHPPTPININKNTKPNHKKKRSETELEDGSVSCNKCRPHSRDKIFILPFDHSNNNSSNSKYSSLLQSPNGIFKSIVSKLTRKSPMSASTTNNNEEQWKMAVAELSHKLVHATRKRDEALQEASRLMNSMSELEKKLNKLEIYCHTLKSGLEECNNINTATNVVGSSNVVAQKNFHHHVQDNDNVVQHFLVAVSEARSSVRLLSRSLTMQLRHTGSKVYEKVSLLLQPYDIKISFSKNPRSLLFYLEALLNKTFFEDFESIGFQKNACNRILNPMERCESSFASFNMIHGLTWDEVLSKGTRHFSEDFSRFCDRKMSEIVAMLGWNRAWSEPLLQAFFVASKSVWMVHLLANSVHPSLPIFRVDKGVNFDSVYMEDMSGDKSSRLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLTNNLSNNKQDKGLNPSP*