AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0681890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681890 MtrunA17_Chr4g0027971 95.855 193 7 1 1 193 1 192 7.72e-131 365
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681890 AT3G44890.1 68.528 197 58 1 1 193 1 197 2.00e-84 248

Find 53 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCAACTTGCTCAAATTT+TGG 0.185092 4_4:+42775240 Msa0681890:CDS
CCATATGCTAAATGCACAAT+TGG 0.305975 4_4:+42776756 Msa0681890:three_prime_UTR
ATGTAAGTAACTAACCTTTC+GGG 0.310588 4_4:-42773970 None:intergenic
CCAATTGTGCATTTAGCATA+TGG 0.332898 4_4:-42776756 None:intergenic
CTTCCTGAGATCAGGGAAAC+AGG 0.355646 4_4:+42776639 Msa0681890:CDS
ATTGTTGATGTTGGAAAGAA+AGG 0.369799 4_4:+42774086 Msa0681890:CDS
TTGTTGAACTTCCTGAGATC+AGG 0.375491 4_4:+42776631 Msa0681890:CDS
TTCACTTTAGCTGTGACCTC+AGG 0.384853 4_4:-42776690 None:intergenic
AGACGACGAGGAAATCTTAA+TGG 0.392628 4_4:+42776900 Msa0681890:three_prime_UTR
GTGAAATTAGATTATATTGA+AGG 0.401514 4_4:+42774058 Msa0681890:intron
GGAATCAGTTGGGGCTTTCA+AGG 0.402616 4_4:+42775261 Msa0681890:CDS
AAGGAAGATATTGTTGATGT+TGG 0.414771 4_4:+42774077 Msa0681890:CDS
TAAAGTGAAATTGAATGTAT+TGG 0.429366 4_4:+42776704 Msa0681890:CDS
TTGGTTTCTGTTTAGTGTTA+CGG 0.433039 4_4:+42775388 Msa0681890:intron
CACAGAATTGCATAAGTTGA+AGG 0.450065 4_4:+42776783 Msa0681890:three_prime_UTR
ATGATTAATTTCTAGGGAGG+TGG 0.452057 4_4:+42776599 Msa0681890:intron
GCAATCTGAGCTTTGCCACT+TGG 0.454864 4_4:-42774155 None:intergenic
CTCAGATGTGTGGACATAGT+TGG 0.455452 4_4:+42776930 Msa0681890:three_prime_UTR
TCTCCTGTTTCCCTGATCTC+AGG 0.464623 4_4:-42776642 None:intergenic
GGTAAAGGAAAACAAATCTT+CGG 0.476682 4_4:+42775298 Msa0681890:CDS
TTCCAGAGAATTGAAGATAG+AGG 0.479130 4_4:+42774831 Msa0681890:intron
GAACTTCTTGATGTGAAGGC+TGG 0.480872 4_4:+42774110 Msa0681890:CDS
AGAAGAACTGTTCAAGTTAG+CGG 0.488165 4_4:-42773889 None:intergenic
TTGTTGATGTTGGAAAGAAA+GGG 0.508856 4_4:+42774087 Msa0681890:CDS
AGATCTTGTTGACATTATCA+AGG 0.516990 4_4:+42775415 Msa0681890:CDS
GAAAACTGAATACACATTCA+AGG 0.517646 4_4:-42776990 None:intergenic
CATATGCTAAATGCACAATT+GGG 0.520371 4_4:+42776757 Msa0681890:three_prime_UTR
TATCATCATAACTCAAAAGA+TGG 0.520394 4_4:-42776813 None:intergenic
TTATCAAGGCACAGCTTCAA+AGG 0.528393 4_4:+42775429 Msa0681890:CDS
GATAGAGGAAGAAAGAATTG+AGG 0.529899 4_4:+42774846 Msa0681890:CDS
TGTAATGTTGTACTTTATGA+TGG 0.535121 4_4:+42777020 Msa0681890:three_prime_UTR
AATTGAGGCTGAGAAACAAC+GGG 0.535838 4_4:+42774861 Msa0681890:CDS
GTGAAGCGTAAAGGTGGTAA+AGG 0.535926 4_4:+42775283 Msa0681890:CDS
TGTTGAACTTCCTGAGATCA+GGG 0.538632 4_4:+42776632 Msa0681890:CDS
CGTCGTCTCGTCTGAGCCAT+CGG 0.539128 4_4:-42776885 None:intergenic
GCTTTCAAGGTGAAGCGTAA+AGG 0.548080 4_4:+42775274 Msa0681890:CDS
TGTTGATGTTGGAAAGAAAG+GGG 0.555682 4_4:+42774088 Msa0681890:CDS
AGGGGAACTTCTTGATGTGA+AGG 0.556055 4_4:+42774106 Msa0681890:CDS
AGAAATTATTTGTTTCCAAG+TGG 0.559860 4_4:+42774140 Msa0681890:CDS
TCACTTTAGCTGTGACCTCA+GGG 0.567822 4_4:-42776689 None:intergenic
GAATTGAGGCTGAGAAACAA+CGG 0.614015 4_4:+42774860 Msa0681890:CDS
ACTGAATACACATTCAAGGA+GGG 0.620010 4_4:-42776986 None:intergenic
AAGGAAAACAAATCTTCGGA+AGG 0.620983 4_4:+42775302 Msa0681890:CDS
GCGGTGAAACTGTGTTGCAA+TGG 0.621788 4_4:-42773870 None:intergenic
ATTTCTATAGGTAAAAGAAG+AGG 0.638826 4_4:+42775216 Msa0681890:intron
AACTGAATACACATTCAAGG+AGG 0.639565 4_4:-42776987 None:intergenic
TTCAAGGTGAAGCGTAAAGG+TGG 0.641294 4_4:+42775277 Msa0681890:CDS
TTGTGTTAACAAAACAACAA+TGG 0.649822 4_4:+42773818 Msa0681890:exon
CTGAATACACATTCAAGGAG+GGG 0.656837 4_4:-42776985 None:intergenic
AAAACATAACACAGTTTGAG+CGG 0.662761 4_4:+42773795 Msa0681890:five_prime_UTR
GAAGACAAAGAAAACCCGAA+AGG 0.673698 4_4:+42773956 Msa0681890:CDS
ATGGCTCAGACGAGACGACG+AGG 0.711146 4_4:+42776888 Msa0681890:three_prime_UTR
AGAGTTAAAACTTCACCCTG+AGG 0.724481 4_4:+42776674 Msa0681890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATACTTTTCTAATAATT+GGG + chr4_4:42775547-42775566 Msa0681890:intron 10.0%
!! AAGAAAAAGTTAAAATGAAA+AGG - chr4_4:42774812-42774831 None:intergenic 15.0%
!! TTTAACTAAACATTATCATA+AGG - chr4_4:42774929-42774948 None:intergenic 15.0%
!!! ATTATTAGAAAAGTATAAAC+AGG - chr4_4:42775546-42775565 None:intergenic 15.0%
!!! GTTTATACTTTTCTAATAAT+TGG + chr4_4:42775546-42775565 Msa0681890:intron 15.0%
!!! TTTTCGATATAATTTATCAA+TGG + chr4_4:42775727-42775746 Msa0681890:intron 15.0%
!! CTATTAATATTATAGTGATT+TGG - chr4_4:42775760-42775779 None:intergenic 15.0%
!! CAAATCACTATAATATTAAT+AGG + chr4_4:42775758-42775777 Msa0681890:intron 15.0%
!!! ATAAAAATGTCATACTTTTA+TGG + chr4_4:42776246-42776265 Msa0681890:intron 15.0%
!!! ATTTTCTATGATTAATTTCT+AGG + chr4_4:42776592-42776611 Msa0681890:intron 15.0%
!!! TTTTCTATGATTAATTTCTA+GGG + chr4_4:42776593-42776612 Msa0681890:intron 15.0%
!!! TATGATGGTAAAAATATTTT+TGG + chr4_4:42777035-42777054 Msa0681890:three_prime_UTR 15.0%
!! GTGAAATTAGATTATATTGA+AGG + chr4_4:42774058-42774077 Msa0681890:intron 20.0%
!!! TTTTAGCAAAGAAATGATAT+GGG - chr4_4:42774902-42774921 None:intergenic 20.0%
!!! ATTTTAGCAAAGAAATGATA+TGG - chr4_4:42774903-42774922 None:intergenic 20.0%
!! TAAAAAGTGAATTCAAAATC+AGG - chr4_4:42775077-42775096 None:intergenic 20.0%
!!! TCTAAGTTTTACATTTCTAT+AGG + chr4_4:42775204-42775223 Msa0681890:intron 20.0%
!!! TTTATTGTTATTCTTTTGTC+TGG + chr4_4:42775628-42775647 Msa0681890:intron 20.0%
!! AAAAGAATCTTTCATTATTG+TGG - chr4_4:42775699-42775718 None:intergenic 20.0%
!! TAATGAATTAGGATATAAGA+TGG - chr4_4:42776043-42776062 None:intergenic 20.0%
!! GAAATTCATCATAATGAATT+AGG - chr4_4:42776054-42776073 None:intergenic 20.0%
!!! TTGAATCTTGAATTATTTTG+AGG + chr4_4:42776193-42776212 Msa0681890:intron 20.0%
!! ATAAGATTTAATTCACGATT+AGG + chr4_4:42776289-42776308 Msa0681890:intron 20.0%
!! TAAAGTGAAATTGAATGTAT+TGG + chr4_4:42776704-42776723 Msa0681890:CDS 20.0%
!!! TAACATTTTTGTATGTGTTT+TGG + chr4_4:42776959-42776978 Msa0681890:three_prime_UTR 20.0%
! TTGTGTTAACAAAACAACAA+TGG + chr4_4:42773818-42773837 Msa0681890:exon 25.0%
!! AATTTTCCAACAAAACTTCA+AGG + chr4_4:42773913-42773932 Msa0681890:CDS 25.0%
! AGAAATTATTTGTTTCCAAG+TGG + chr4_4:42774140-42774159 Msa0681890:CDS 25.0%
! AAATTGCGAAATCTTATGTA+AGG - chr4_4:42774228-42774247 None:intergenic 25.0%
! ATTTACATTAGTAGTAGAGT+AGG + chr4_4:42774250-42774269 Msa0681890:intron 25.0%
! TAGAAACTCTTAAGAGAATT+TGG - chr4_4:42774522-42774541 None:intergenic 25.0%
! ATTTCTATAGGTAAAAGAAG+AGG + chr4_4:42775216-42775235 Msa0681890:intron 25.0%
! ACAGGAATGTTATAACTTAT+AGG - chr4_4:42775528-42775547 None:intergenic 25.0%
! GCATTAAGCATATAACTATT+TGG - chr4_4:42775606-42775625 None:intergenic 25.0%
! TATGAACCTTTCTTCAAAAT+TGG - chr4_4:42775666-42775685 None:intergenic 25.0%
! ACTAAAAGGAATTTCTCTAA+GGG - chr4_4:42775805-42775824 None:intergenic 25.0%
! AACTAAAAGGAATTTCTCTA+AGG - chr4_4:42775806-42775825 None:intergenic 25.0%
!!! GAAATTCCTTTTAGTTTGAA+TGG + chr4_4:42775810-42775829 Msa0681890:intron 25.0%
! ACAATTCCATTCAAACTAAA+AGG - chr4_4:42775819-42775838 None:intergenic 25.0%
! CATAATAGATAATACCACAA+AGG + chr4_4:42776367-42776386 Msa0681890:intron 25.0%
! TAGATTCATTTGAATGTGTT+CGG + chr4_4:42776428-42776447 Msa0681890:intron 25.0%
! TATCATCATAACTCAAAAGA+TGG - chr4_4:42776816-42776835 None:intergenic 25.0%
! TGTAATGTTGTACTTTATGA+TGG + chr4_4:42777020-42777039 Msa0681890:three_prime_UTR 25.0%
AAAACATAACACAGTTTGAG+CGG + chr4_4:42773795-42773814 Msa0681890:five_prime_UTR 30.0%
!! TAAGAACCTTGAAGTTTTGT+TGG - chr4_4:42773922-42773941 None:intergenic 30.0%
ATGTAAGTAACTAACCTTTC+GGG - chr4_4:42773973-42773992 None:intergenic 30.0%
GATGTAAGTAACTAACCTTT+CGG - chr4_4:42773974-42773993 None:intergenic 30.0%
AAGGAAGATATTGTTGATGT+TGG + chr4_4:42774077-42774096 Msa0681890:CDS 30.0%
ATTGTTGATGTTGGAAAGAA+AGG + chr4_4:42774086-42774105 Msa0681890:CDS 30.0%
TTGTTGATGTTGGAAAGAAA+GGG + chr4_4:42774087-42774106 Msa0681890:CDS 30.0%
TCTAAAGACAATCAATGCAA+GGG - chr4_4:42774789-42774808 None:intergenic 30.0%
TATCTGATTATCTGCAGTTT+AGG + chr4_4:42775098-42775117 Msa0681890:intron 30.0%
TATGTCTTCAAATACACCTA+GGG - chr4_4:42775176-42775195 None:intergenic 30.0%
ATATGTCTTCAAATACACCT+AGG - chr4_4:42775177-42775196 None:intergenic 30.0%
!!! CTCAAATTTTGGAATCAGTT+GGG + chr4_4:42775251-42775270 Msa0681890:CDS 30.0%
!!! TCAAATTTTGGAATCAGTTG+GGG + chr4_4:42775252-42775271 Msa0681890:CDS 30.0%
GGTAAAGGAAAACAAATCTT+CGG + chr4_4:42775298-42775317 Msa0681890:CDS 30.0%
TAGGCACAATCATACATATA+TGG - chr4_4:42775364-42775383 None:intergenic 30.0%
CTAAACAGAAACCAAACATT+AGG - chr4_4:42775383-42775402 None:intergenic 30.0%
TTGGTTTCTGTTTAGTGTTA+CGG + chr4_4:42775388-42775407 Msa0681890:intron 30.0%
AGATCTTGTTGACATTATCA+AGG + chr4_4:42775415-42775434 Msa0681890:CDS 30.0%
AACCTTTCTTCAAAATTGGA+AGG - chr4_4:42775662-42775681 None:intergenic 30.0%
! ATTTCTCTAAGGGATATATC+AGG - chr4_4:42775795-42775814 None:intergenic 30.0%
TACCTAAAATTAGTGTAGCT+AGG + chr4_4:42776114-42776133 Msa0681890:intron 30.0%
! TTTTCTCAACTTTGTATAGC+TGG + chr4_4:42776141-42776160 Msa0681890:intron 30.0%
GATTAGGAAAATAGATCGTT+TGG + chr4_4:42776305-42776324 Msa0681890:intron 30.0%
ACCACAAAGGAAAACTTTAT+AGG + chr4_4:42776380-42776399 Msa0681890:intron 30.0%
! ACCTATAAAGTTTTCCTTTG+TGG - chr4_4:42776384-42776403 None:intergenic 30.0%
CAAATGAATCTACAGAATCA+TGG - chr4_4:42776420-42776439 None:intergenic 30.0%
! TCTATGATTAATTTCTAGGG+AGG + chr4_4:42776596-42776615 Msa0681890:intron 30.0%
CATATGCTAAATGCACAATT+GGG + chr4_4:42776757-42776776 Msa0681890:three_prime_UTR 30.0%
! CACAGTAGTTTTTGTAACTA+TGG + chr4_4:42776862-42776881 Msa0681890:three_prime_UTR 30.0%
GAAAACTGAATACACATTCA+AGG - chr4_4:42776993-42777012 None:intergenic 30.0%
! AGAAGAACTGTTCAAGTTAG+CGG - chr4_4:42773892-42773911 None:intergenic 35.0%
TGTTGATGTTGGAAAGAAAG+GGG + chr4_4:42774088-42774107 Msa0681890:CDS 35.0%
! GTGAAGGGTATATACTCTAT+AGG + chr4_4:42774455-42774474 Msa0681890:intron 35.0%
GAACCAACACTTCATATTGA+AGG + chr4_4:42774569-42774588 Msa0681890:intron 35.0%
ACACCTTCAATATGAAGTGT+TGG - chr4_4:42774575-42774594 None:intergenic 35.0%
TGGTATTCGTGTTTGTGTTA+AGG + chr4_4:42774701-42774720 Msa0681890:intron 35.0%
GTCTAAAGACAATCAATGCA+AGG - chr4_4:42774790-42774809 None:intergenic 35.0%
TTCCAGAGAATTGAAGATAG+AGG + chr4_4:42774831-42774850 Msa0681890:intron 35.0%
TTCCTCTATCTTCAATTCTC+TGG - chr4_4:42774836-42774855 None:intergenic 35.0%
GATAGAGGAAGAAAGAATTG+AGG + chr4_4:42774846-42774865 Msa0681890:CDS 35.0%
!! TAAGAGTGTTAGAGTTCAAG+AGG + chr4_4:42774972-42774991 Msa0681890:intron 35.0%
! AGCTTATAGCTTTTCATGCA+AGG - chr4_4:42775037-42775056 None:intergenic 35.0%
! TTAGTGAAGTTTTTACCCCT+AGG + chr4_4:42775157-42775176 Msa0681890:intron 35.0%
ATGTCTTCAAATACACCTAG+GGG - chr4_4:42775175-42775194 None:intergenic 35.0%
!! ACTGCAACTTGCTCAAATTT+TGG + chr4_4:42775240-42775259 Msa0681890:CDS 35.0%
!!! GCTCAAATTTTGGAATCAGT+TGG + chr4_4:42775250-42775269 Msa0681890:CDS 35.0%
AAGGAAAACAAATCTTCGGA+AGG + chr4_4:42775302-42775321 Msa0681890:CDS 35.0%
ATATGTTCTACCCAATTACG+AGG + chr4_4:42775326-42775345 Msa0681890:intron 35.0%
CAAAGTGAAACCTCGTAATT+GGG - chr4_4:42775339-42775358 None:intergenic 35.0%
ACAAAGTGAAACCTCGTAAT+TGG - chr4_4:42775340-42775359 None:intergenic 35.0%
GTATGATTGTGCCTAATGTT+TGG + chr4_4:42775369-42775388 Msa0681890:intron 35.0%
ATGTGCATCAGAAAGATGAA+TGG - chr4_4:42775457-42775476 None:intergenic 35.0%
!! GTTATTCTTTTGTCTGGCTT+TGG + chr4_4:42775634-42775653 Msa0681890:intron 35.0%
!! AGCCTTCCAATTTTGAAGAA+AGG + chr4_4:42775657-42775676 Msa0681890:intron 35.0%
CTAAGGGATATATCAGGTAT+TGG - chr4_4:42775789-42775808 None:intergenic 35.0%
ATCAATCGATAAGGATAAGC+AGG - chr4_4:42775909-42775928 None:intergenic 35.0%
TACACACTAGGGATTCATAT+CGG - chr4_4:42776001-42776020 None:intergenic 35.0%
TACAAAGTCGATACACACTA+GGG - chr4_4:42776012-42776031 None:intergenic 35.0%
! TGCCTAGCTACACTAATTTT+AGG - chr4_4:42776119-42776138 None:intergenic 35.0%
CATCAAACGACAAAAGACAA+TGG - chr4_4:42776167-42776186 None:intergenic 35.0%
TGAATCTACAGAATCATGGA+AGG - chr4_4:42776416-42776435 None:intergenic 35.0%
! ATGATTAATTTCTAGGGAGG+TGG + chr4_4:42776599-42776618 Msa0681890:intron 35.0%
CCAATTGTGCATTTAGCATA+TGG - chr4_4:42776759-42776778 None:intergenic 35.0%
CCATATGCTAAATGCACAAT+TGG + chr4_4:42776756-42776775 Msa0681890:three_prime_UTR 35.0%
! CACAGAATTGCATAAGTTGA+AGG + chr4_4:42776783-42776802 Msa0681890:three_prime_UTR 35.0%
ACTGAATACACATTCAAGGA+GGG - chr4_4:42776989-42777008 None:intergenic 35.0%
AACTGAATACACATTCAAGG+AGG - chr4_4:42776990-42777009 None:intergenic 35.0%
GAAGACAAAGAAAACCCGAA+AGG + chr4_4:42773956-42773975 Msa0681890:CDS 40.0%
CTACATGTCAATGTTGTGTC+CGG - chr4_4:42774308-42774327 None:intergenic 40.0%
TCAGATCAAAGGTGGATACT+CGG - chr4_4:42774404-42774423 None:intergenic 40.0%
AGTGCTACATAGGTTACTAG+CGG + chr4_4:42774430-42774449 Msa0681890:intron 40.0%
! CTTCATATTGAAGGTGTGTC+TGG + chr4_4:42774578-42774597 Msa0681890:intron 40.0%
TGATGTGTCAGTGTTGTGTT+TGG + chr4_4:42774681-42774700 Msa0681890:intron 40.0%
GAATTGAGGCTGAGAAACAA+CGG + chr4_4:42774860-42774879 Msa0681890:CDS 40.0%
AATTGAGGCTGAGAAACAAC+GGG + chr4_4:42774861-42774880 Msa0681890:CDS 40.0%
GTGTTAGAGTTCAAGAGGAA+AGG + chr4_4:42774977-42774996 Msa0681890:intron 40.0%
TTATCAAGGCACAGCTTCAA+AGG + chr4_4:42775429-42775448 Msa0681890:CDS 40.0%
!! CATGGTGCTATCAATCGATA+AGG - chr4_4:42775918-42775937 None:intergenic 40.0%
! CTTATCGATTGATAGCACCA+TGG + chr4_4:42775916-42775935 Msa0681890:intron 40.0%
ACACACTAGGGATTCATATC+GGG - chr4_4:42776000-42776019 None:intergenic 40.0%
GTACAAAGTCGATACACACT+AGG - chr4_4:42776013-42776032 None:intergenic 40.0%
TTGTTGAACTTCCTGAGATC+AGG + chr4_4:42776631-42776650 Msa0681890:CDS 40.0%
TGTTGAACTTCCTGAGATCA+GGG + chr4_4:42776632-42776651 Msa0681890:CDS 40.0%
AGAGTTAAAACTTCACCCTG+AGG + chr4_4:42776674-42776693 Msa0681890:CDS 40.0%
! GTTTTTGTAACTATGGCCGA+TGG + chr4_4:42776869-42776888 Msa0681890:three_prime_UTR 40.0%
AGACGACGAGGAAATCTTAA+TGG + chr4_4:42776900-42776919 Msa0681890:three_prime_UTR 40.0%
! TGGACATTTTCTCAGATGTG+TGG + chr4_4:42776920-42776939 Msa0681890:three_prime_UTR 40.0%
CTGAATACACATTCAAGGAG+GGG - chr4_4:42776988-42777007 None:intergenic 40.0%
AGGGGAACTTCTTGATGTGA+AGG + chr4_4:42774106-42774125 Msa0681890:CDS 45.0%
GAACTTCTTGATGTGAAGGC+TGG + chr4_4:42774110-42774129 Msa0681890:CDS 45.0%
CTGACACTTCAGATCAAAGG+TGG - chr4_4:42774412-42774431 None:intergenic 45.0%
! GCACTGACACTTCAGATCAA+AGG - chr4_4:42774415-42774434 None:intergenic 45.0%
! CTGAAGTGTCAGTGCTACAT+AGG + chr4_4:42774420-42774439 Msa0681890:intron 45.0%
TAGGTTACTAGCGGTAGTGA+AGG + chr4_4:42774439-42774458 Msa0681890:intron 45.0%
AGGTTACTAGCGGTAGTGAA+GGG + chr4_4:42774440-42774459 Msa0681890:intron 45.0%
TGTCAAAGACCAACACGTGT+TGG - chr4_4:42774607-42774626 None:intergenic 45.0%
TGGTCTTTGACATCGAGACA+TGG + chr4_4:42774615-42774634 Msa0681890:intron 45.0%
GGTCTTTGACATCGAGACAT+GGG + chr4_4:42774616-42774635 Msa0681890:intron 45.0%
GCTTTCAAGGTGAAGCGTAA+AGG + chr4_4:42775274-42775293 Msa0681890:CDS 45.0%
TTCAAGGTGAAGCGTAAAGG+TGG + chr4_4:42775277-42775296 Msa0681890:CDS 45.0%
GTGAAGCGTAAAGGTGGTAA+AGG + chr4_4:42775283-42775302 Msa0681890:CDS 45.0%
ACGCAAGATACTGACAACCA+TGG - chr4_4:42775936-42775955 None:intergenic 45.0%
ACTAGGGATTCATATCGGGT+GGG - chr4_4:42775996-42776015 None:intergenic 45.0%
! TAGATCGTTTGGTTCACGAC+TGG + chr4_4:42776316-42776335 Msa0681890:intron 45.0%
TCACTTTAGCTGTGACCTCA+GGG - chr4_4:42776692-42776711 None:intergenic 45.0%
TTCACTTTAGCTGTGACCTC+AGG - chr4_4:42776693-42776712 None:intergenic 45.0%
CTCAGATGTGTGGACATAGT+TGG + chr4_4:42776930-42776949 Msa0681890:three_prime_UTR 45.0%
GCGGTGAAACTGTGTTGCAA+TGG - chr4_4:42773873-42773892 None:intergenic 50.0%
GCAATCTGAGCTTTGCCACT+TGG - chr4_4:42774158-42774177 None:intergenic 50.0%
GTTACCAGAAGCAGAGACAC+CGG + chr4_4:42774286-42774305 Msa0681890:intron 50.0%
GTCTGGTATCCAACACGTGT+TGG + chr4_4:42774595-42774614 Msa0681890:intron 50.0%
GGAATCAGTTGGGGCTTTCA+AGG + chr4_4:42775261-42775280 Msa0681890:CDS 50.0%
CACTAGGGATTCATATCGGG+TGG - chr4_4:42775997-42776016 None:intergenic 50.0%
CTTCCTGAGATCAGGGAAAC+AGG + chr4_4:42776639-42776658 Msa0681890:CDS 50.0%
TCTCCTGTTTCCCTGATCTC+AGG - chr4_4:42776645-42776664 None:intergenic 50.0%
GTGTCCGGTGTCTCTGCTTC+TGG - chr4_4:42774293-42774312 None:intergenic 60.0%
CGTCGTCTCGTCTGAGCCAT+CGG - chr4_4:42776888-42776907 None:intergenic 60.0%
ATGGCTCAGACGAGACGACG+AGG + chr4_4:42776888-42776907 Msa0681890:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 42773775 42777092 42773775 ID=Msa0681890;Name=Msa0681890
chr4_4 mRNA 42773775 42777092 42773775 ID=Msa0681890-mRNA-1;Parent=Msa0681890;Name=Msa0681890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62|1|1|1|1|1|6|358|193
chr4_4 exon 42773775 42773977 42773775 ID=Msa0681890-mRNA-1:exon:10255;Parent=Msa0681890-mRNA-1
chr4_4 exon 42774068 42774195 42774068 ID=Msa0681890-mRNA-1:exon:10256;Parent=Msa0681890-mRNA-1
chr4_4 exon 42774837 42774882 42774837 ID=Msa0681890-mRNA-1:exon:10257;Parent=Msa0681890-mRNA-1
chr4_4 exon 42775226 42775323 42775226 ID=Msa0681890-mRNA-1:exon:10258;Parent=Msa0681890-mRNA-1
chr4_4 exon 42775403 42775450 42775403 ID=Msa0681890-mRNA-1:exon:10259;Parent=Msa0681890-mRNA-1
chr4_4 exon 42776614 42777092 42776614 ID=Msa0681890-mRNA-1:exon:10260;Parent=Msa0681890-mRNA-1
chr4_4 five_prime_UTR 42773775 42773836 42773775 ID=Msa0681890-mRNA-1:five_prime_utr;Parent=Msa0681890-mRNA-1
chr4_4 CDS 42773837 42773977 42773837 ID=Msa0681890-mRNA-1:cds;Parent=Msa0681890-mRNA-1
chr4_4 CDS 42774068 42774195 42774068 ID=Msa0681890-mRNA-1:cds;Parent=Msa0681890-mRNA-1
chr4_4 CDS 42774837 42774882 42774837 ID=Msa0681890-mRNA-1:cds;Parent=Msa0681890-mRNA-1
chr4_4 CDS 42775226 42775323 42775226 ID=Msa0681890-mRNA-1:cds;Parent=Msa0681890-mRNA-1
chr4_4 CDS 42775403 42775450 42775403 ID=Msa0681890-mRNA-1:cds;Parent=Msa0681890-mRNA-1
chr4_4 CDS 42776614 42776734 42776614 ID=Msa0681890-mRNA-1:cds;Parent=Msa0681890-mRNA-1
chr4_4 three_prime_UTR 42776735 42777092 42776735 ID=Msa0681890-mRNA-1:three_prime_utr;Parent=Msa0681890-mRNA-1
Gene Sequence

>Msa0681890

ATGGCATCATCATCAACATTATCTTCTTCACTTCCATTGCAACACAGTTTCACCGCTAACTTGAACAGTTCTTCTCAATTTTCCAACAAAACTTCAAGGTTCTTAATTTTCGCTCAAAAGAAGACAAAGAAAACCCGAAAGATTATATTGAAGGAAGATATTGTTGATGTTGGAAAGAAAGGGGAACTTCTTGATGTGAAGGCTGGATTTTTCAGAAATTATTTGTTTCCAAGTGGCAAAGCTCAGATTGCAACTGCTGATTTGCTTAAAGAATTGAAGATAGAGGAAGAAAGAATTGAGGCTGAGAAACAACGGGTAAAAGAAGAGGCACTGCAACTTGCTCAAATTTTGGAATCAGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATCTTCGGAAGTGTTACGGCTCAAGATCTTGTTGACATTATCAAGGCACAGCTTCAAAGGGAGGTGGACAAGAGAATTGTTGAACTTCCTGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAACTTCACCCTGAGGTCACAGCTAAAGTGAAATTGAATGTATTGGCTAACTGA

Protein sequence

>Msa0681890

MASSSTLSSSLPLQHSFTANLNSSSQFSNKTSRFLIFAQKKTKKTRKIILKEDIVDVGKKGELLDVKAGFFRNYLFPSGKAQIATADLLKELKIEEERIEAEKQRVKEEALQLAQILESVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVELPEIRETGEYIAELKLHPEVTAKVKLNVLAN*