AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0925160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0925160 MtrunA17_Chr6g0471271 96.791 187 6 0 5 191 40 226 3.33e-132 369
Msa0925160 MtrunA17_Chr1g0197271 44.944 89 47 1 94 180 5 93 6.62e-22 85.5
Msa0925160 MtrunA17_Chr1g0188891 45.882 85 44 1 98 180 9 93 2.76e-21 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0925160 AT1G05190.1 82.353 187 33 0 5 191 37 223 5.78e-114 323
Msa0925160 AT2G18400.1 46.067 89 46 1 94 180 5 93 1.74e-23 90.1

Find 55 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGAAACTTCAACTTAT+TGG 0.159385 6_2:-67923653 Msa0925160:CDS
CCCTTACCTTTGTAGGGTTC+TGG 0.218928 6_2:+67923443 None:intergenic
ACCTTCACTTTGAGGCCTTC+AGG 0.263864 6_2:+67923551 None:intergenic
TTTGATACCCTTACCTTTGT+AGG 0.300119 6_2:+67923436 None:intergenic
ATCCAATGTAACTATCAAAA+TGG 0.303648 6_2:-67925376 Msa0925160:CDS
TTGCGGCTTCGATTAGAAAA+TGG 0.305439 6_2:-67923472 Msa0925160:CDS
TCAGGGATTGTCATCTTAAC+AGG 0.311247 6_2:+67923569 None:intergenic
CCTTCACTTTGAGGCCTTCA+GGG 0.346534 6_2:+67923552 None:intergenic
TTTACAAGTGAAAGGTCCTT+TGG 0.350575 6_2:-67925343 Msa0925160:CDS
TTTCATCTACCTTCACTTTG+AGG 0.365649 6_2:+67923543 None:intergenic
ACATTGGATGGAACGGGAAT+TGG 0.366524 6_2:+67925390 None:intergenic
AACGAAGTAGTCTTGAATCT+TGG 0.379551 6_2:-67923602 Msa0925160:CDS
AGGAGAAAGGAAGGAAAAGC+AGG 0.383827 6_2:-67923395 Msa0925160:CDS
ATAGTTACATTGGATGGAAC+GGG 0.422003 6_2:+67925384 None:intergenic
GGATATGACAAGTCTGAGAT+TGG 0.426355 6_2:-67923500 Msa0925160:CDS
ATATCCACTAACTGTGATTC+TGG 0.428194 6_2:+67923517 None:intergenic
TTACAAGTGAAAGGTCCTTT+GGG 0.428296 6_2:-67925342 Msa0925160:CDS
GGTTATCGTGCTATGGTAGA+AGG 0.428439 6_2:-67923626 Msa0925160:CDS
GTAAGGCAGTCGAAACTAGA+AGG 0.432413 6_2:-67925251 Msa0925160:CDS
AACACCAGAATCACAGTTAG+TGG 0.439924 6_2:-67923521 Msa0925160:CDS
GTCTGAGATTGGGCAGTTTG+CGG 0.442471 6_2:-67923489 Msa0925160:CDS
TAGAAAGACTACCGAATGTA+AGG 0.454853 6_2:-67925433 Msa0925160:intron
CTTACGGACAACATAGTGAT+TGG 0.462044 6_2:-67923692 Msa0925160:CDS
AATGTAAGGAATCACGGATT+GGG 0.463821 6_2:-67925419 Msa0925160:CDS
GAAGTTGTAAGGAGAAAGGA+AGG 0.473123 6_2:-67923404 Msa0925160:CDS
AGCTTGAGAGGCAAGAAGAA+GGG 0.473759 6_2:-67925287 Msa0925160:CDS
AATATGAAGATGAAGTTGTA+AGG 0.477736 6_2:-67923415 Msa0925160:CDS
TTGATACCCTTACCTTTGTA+GGG 0.482564 6_2:+67923437 None:intergenic
AATCCGTGATTCCTTACATT+CGG 0.484023 6_2:+67925422 None:intergenic
ATAGTGATTGGAGTATCTAA+AGG 0.494629 6_2:-67923680 Msa0925160:CDS
AGATGAAGTTGTAAGGAGAA+AGG 0.496476 6_2:-67923408 Msa0925160:CDS
GAATGTAAGGAATCACGGAT+TGG 0.498607 6_2:-67925420 Msa0925160:CDS
TGGTGTCGGTTATCGTGCTA+TGG 0.520430 6_2:-67923633 Msa0925160:CDS
AAGCTTGAGAGGCAAGAAGA+AGG 0.521087 6_2:-67925288 Msa0925160:CDS
TCCAGAACCCTACAAAGGTA+AGG 0.527022 6_2:-67923444 Msa0925160:CDS
AATGTAACTATCAAAATGGA+AGG 0.530387 6_2:-67925372 Msa0925160:CDS
CTCTCAAGCTTAACTTCTCG+AGG 0.534222 6_2:+67925300 None:intergenic
AAACTTCAACTTATTGGTGT+CGG 0.535328 6_2:-67923647 Msa0925160:CDS
GATATGACAAGTCTGAGATT+GGG 0.540917 6_2:-67923499 Msa0925160:CDS
GGAGAAAGGAAGGAAAAGCA+GGG 0.545189 6_2:-67923394 Msa0925160:CDS
GCTTGAGAGGCAAGAAGAAG+GGG 0.551668 6_2:-67925286 Msa0925160:CDS
GGGCAATATTTACAAGTGAA+AGG 0.553289 6_2:-67925351 Msa0925160:CDS
TTACCTTTGTAGGGTTCTGG+AGG 0.564618 6_2:+67923446 None:intergenic
GATAGTTACATTGGATGGAA+CGG 0.567426 6_2:+67925383 None:intergenic
CCCTGAAGGCCTCAAAGTGA+AGG 0.567766 6_2:-67923552 Msa0925160:CDS
CTCGAGAAGTTAAGCTTGAG+AGG 0.575979 6_2:-67925299 Msa0925160:CDS
CTACCGAATGTAAGGAATCA+CGG 0.576712 6_2:-67925425 Msa0925160:CDS
GAAGGGCAAATCAAATGCAC+GGG 0.584831 6_2:-67925233 Msa0925160:CDS
AGAAGGGCAAATCAAATGCA+CGG 0.586479 6_2:-67925234 Msa0925160:CDS
TAAGGCAGTCGAAACTAGAA+GGG 0.621043 6_2:-67925250 Msa0925160:CDS
CCAGAACCCTACAAAGGTAA+GGG 0.628031 6_2:-67923443 Msa0925160:CDS
ATGTAACTATCAAAATGGAA+GGG 0.630990 6_2:-67925371 Msa0925160:CDS
GTTAAGATGACAATCCCTGA+AGG 0.655322 6_2:-67923566 Msa0925160:CDS
GTTAACGAAAGTTCTCCCAA+AGG 0.680959 6_2:+67925327 None:intergenic
AGACCTCCAGAACCCTACAA+AGG 0.715455 6_2:-67923449 Msa0925160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATCATGATAATTTA+TGG - chr6_2:67925402-67925421 Msa0925160:CDS 10.0%
!! TTAAAATCATGATAATTTAT+GGG - chr6_2:67925403-67925422 Msa0925160:CDS 10.0%
!!! TCATTTTCTCAAATTATTAT+GGG - chr6_2:67923686-67923705 Msa0925160:CDS 15.0%
!!! AAAGAAAATAACAATTGTTT+TGG - chr6_2:67923917-67923936 Msa0925160:intron 15.0%
!!! AAGAAAATAACAATTGTTTT+GGG - chr6_2:67923918-67923937 Msa0925160:intron 15.0%
!!! TATTGTTAGTTATTTTTCTT+TGG - chr6_2:67925120-67925139 Msa0925160:intron 15.0%
!!! ATTGTTAGTTATTTTTCTTT+GGG - chr6_2:67925121-67925140 Msa0925160:intron 15.0%
!! TATCATTATAATATGATCAT+TGG + chr6_2:67925261-67925280 None:intergenic 15.0%
!! ATAACATTTGATTCATTTAT+TGG - chr6_2:67925292-67925311 Msa0925160:CDS 15.0%
!! TAACATTTGATTCATTTATT+GGG - chr6_2:67925293-67925312 Msa0925160:CDS 15.0%
!!! TTAGAATTTTGTATTTGATT+AGG - chr6_2:67925470-67925489 Msa0925160:intron 15.0%
!! TTTGACAAAATTCAATGAAA+TGG - chr6_2:67923418-67923437 Msa0925160:CDS 20.0%
!!! GTCATTTTCTCAAATTATTA+TGG - chr6_2:67923685-67923704 Msa0925160:CDS 20.0%
!!! TTTTGGCAAAAACTATATTT+TGG - chr6_2:67923826-67923845 Msa0925160:intron 20.0%
!!! AATTTTAAGTCATCTTTTGT+TGG - chr6_2:67924272-67924291 Msa0925160:intron 20.0%
!! AACATTTGATTCATTTATTG+GGG - chr6_2:67925294-67925313 Msa0925160:CDS 20.0%
!!! TCATGATTTTAAAGAACTTA+GGG + chr6_2:67925395-67925414 None:intergenic 20.0%
!!! ATCATGATTTTAAAGAACTT+AGG + chr6_2:67925396-67925415 None:intergenic 20.0%
!! AGTATCAATCTTAAAAACAT+AGG + chr6_2:67925518-67925537 None:intergenic 20.0%
!!! GTCTATATTTTTGTATGTAT+GGG - chr6_2:67925927-67925946 Msa0925160:intron 20.0%
!!! TTGTGCAAATAAATGTTTTT+AGG - chr6_2:67926064-67926083 Msa0925160:intron 20.0%
! TTTACATAGTTAGTGATTGT+AGG - chr6_2:67923523-67923542 Msa0925160:CDS 25.0%
! AATTCAATGTAATCATGTGT+CGG + chr6_2:67923663-67923682 None:intergenic 25.0%
! AGTAGTAAAACAGGTAATTA+AGG - chr6_2:67923744-67923763 Msa0925160:intron 25.0%
! TGAAATTATTCACGTAGAAT+TGG - chr6_2:67923768-67923787 Msa0925160:intron 25.0%
!! TTTCTTTTATAGTGCATGTT+TGG + chr6_2:67923904-67923923 None:intergenic 25.0%
!!! GTTTTGGGAAATTATTGTTT+TGG - chr6_2:67923933-67923952 Msa0925160:intron 25.0%
!!! TATTGTTTTGGTTGCTTTAT+TGG - chr6_2:67923945-67923964 Msa0925160:intron 25.0%
!!! ATTGTTTTGGTTGCTTTATT+GGG - chr6_2:67923946-67923965 Msa0925160:intron 25.0%
!! GGCTTTTATTATGTTATAGT+AGG - chr6_2:67923997-67924016 Msa0925160:intron 25.0%
!!! ATTTTGATAGTTACATTGGA+TGG + chr6_2:67924407-67924426 None:intergenic 25.0%
! ATCCAATGTAACTATCAAAA+TGG - chr6_2:67924406-67924425 Msa0925160:intron 25.0%
!!! TTCCATTTTGATAGTTACAT+TGG + chr6_2:67924411-67924430 None:intergenic 25.0%
! AATGTAACTATCAAAATGGA+AGG - chr6_2:67924410-67924429 Msa0925160:intron 25.0%
! ATGTAACTATCAAAATGGAA+GGG - chr6_2:67924411-67924430 Msa0925160:intron 25.0%
!!! TTTTTAATTGTTTCCTGACA+TGG - chr6_2:67924600-67924619 Msa0925160:intron 25.0%
! AAATAAAAAGATCTGAACCA+TGG + chr6_2:67924718-67924737 None:intergenic 25.0%
! TGAGTTAAATTGAGCAAATT+GGG - chr6_2:67924954-67924973 Msa0925160:intron 25.0%
!! AGTATTCAATTTCTCTTTTC+TGG - chr6_2:67925017-67925036 Msa0925160:intron 25.0%
! TTATAATATGATCATTGGCA+AGG + chr6_2:67925256-67925275 None:intergenic 25.0%
! TTTACAGAAAGAGAAAGAAA+TGG - chr6_2:67925654-67925673 Msa0925160:intron 25.0%
! ATGGAAGTAACTAATCATAT+TGG - chr6_2:67925673-67925692 Msa0925160:intron 25.0%
! AAGTAACTAATCATATTGGT+AGG - chr6_2:67925677-67925696 Msa0925160:intron 25.0%
!!! TTTTCTGTTTCTATTGAATC+TGG + chr6_2:67925724-67925743 None:intergenic 25.0%
! TCTCTAATTGTTCATGTTTA+CGG + chr6_2:67925761-67925780 None:intergenic 25.0%
!!! GGTCTATATTTTTGTATGTA+TGG - chr6_2:67925926-67925945 Msa0925160:intron 25.0%
!!! AAATGTTTTTAGGACACTTA+CGG - chr6_2:67926074-67926093 Msa0925160:intron 25.0%
! GAAAAGAAACTTCAACTTAT+TGG - chr6_2:67926129-67926148 Msa0925160:intron 25.0%
! AATATGAAGATGAAGTTGTA+AGG - chr6_2:67926367-67926386 Msa0925160:intron 25.0%
TATGAAGCACGAATACTAAT+TGG - chr6_2:67923585-67923604 Msa0925160:CDS 30.0%
AGCTTTCATAGTAGTAAAAC+AGG - chr6_2:67923735-67923754 Msa0925160:intron 30.0%
! TTAGTAAGTTGCTGTGATTT+TGG - chr6_2:67923809-67923828 Msa0925160:intron 30.0%
TATACAAAGATCTTGATGTG+AGG - chr6_2:67923976-67923995 Msa0925160:intron 30.0%
! TTTTAGTCACTCGTGAATTT+TGG - chr6_2:67924134-67924153 Msa0925160:intron 30.0%
GAAATATGAAAGCAAATGAC+TGG + chr6_2:67924249-67924268 None:intergenic 30.0%
!! AACATCTATTTTTCCATGTC+AGG + chr6_2:67924616-67924635 None:intergenic 30.0%
AAAAATAGATGTTGCCAATG+AGG - chr6_2:67924623-67924642 Msa0925160:intron 30.0%
CAGCTATTAGATAAAATCCA+TGG - chr6_2:67924698-67924717 Msa0925160:intron 30.0%
!!! TTTAGTTTTCACCGATCTAA+AGG + chr6_2:67924776-67924795 None:intergenic 30.0%
GTGAGTTAAATTGAGCAAAT+TGG - chr6_2:67924953-67924972 Msa0925160:intron 30.0%
AGTACTAGTCACAATGAAAT+TGG - chr6_2:67924988-67925007 Msa0925160:intron 30.0%
ATTCGAGATATACTTAAGAC+AGG - chr6_2:67925346-67925365 Msa0925160:CDS 30.0%
! TAGGATTATAAATGCCACTT+TGG - chr6_2:67925489-67925508 Msa0925160:intron 30.0%
TTCAAACAAAATGCTGTCTT+TGG - chr6_2:67925540-67925559 Msa0925160:intron 30.0%
AATCACAAGCACTAAATACT+TGG + chr6_2:67925570-67925589 None:intergenic 30.0%
AACTACTTGTAGAAAATGCT+AGG + chr6_2:67925624-67925643 None:intergenic 30.0%
!! AAGAGAGTGTTATCTTTCAT+GGG + chr6_2:67925813-67925832 None:intergenic 30.0%
! ATAGTGATTGGAGTATCTAA+AGG - chr6_2:67926102-67926121 Msa0925160:intron 30.0%
AAACTTCAACTTATTGGTGT+CGG - chr6_2:67926135-67926154 Msa0925160:intron 30.0%
GCACGAATACTAATTGGATT+AGG - chr6_2:67923591-67923610 Msa0925160:CDS 35.0%
GCTTCAACAAAATCATGTTG+CGG - chr6_2:67923850-67923869 Msa0925160:intron 35.0%
! TTTCCACTTCGTTGTGTTTT+AGG + chr6_2:67924065-67924084 None:intergenic 35.0%
GGAAAGTGACTTCTAATTGA+AGG - chr6_2:67924080-67924099 Msa0925160:intron 35.0%
GTGACTTCTAATTGAAGGAT+AGG - chr6_2:67924085-67924104 Msa0925160:intron 35.0%
AAGAAACCAATATGAGTAGC+AGG + chr6_2:67924329-67924348 None:intergenic 35.0%
TAGAAAGACTACCGAATGTA+AGG - chr6_2:67924349-67924368 Msa0925160:intron 35.0%
AATCCGTGATTCCTTACATT+CGG + chr6_2:67924363-67924382 None:intergenic 35.0%
AATGTAAGGAATCACGGATT+GGG - chr6_2:67924363-67924382 Msa0925160:intron 35.0%
ATAGTTACATTGGATGGAAC+GGG + chr6_2:67924401-67924420 None:intergenic 35.0%
GATAGTTACATTGGATGGAA+CGG + chr6_2:67924402-67924421 None:intergenic 35.0%
GGGCAATATTTACAAGTGAA+AGG - chr6_2:67924431-67924450 Msa0925160:intron 35.0%
TTTACAAGTGAAAGGTCCTT+TGG - chr6_2:67924439-67924458 Msa0925160:intron 35.0%
TTACAAGTGAAAGGTCCTTT+GGG - chr6_2:67924440-67924459 Msa0925160:intron 35.0%
AAACGACTTGTCCTTTAGAT+CGG - chr6_2:67924762-67924781 Msa0925160:intron 35.0%
!! TGTTTTTGCAATCCATGTCA+TGG + chr6_2:67924903-67924922 None:intergenic 35.0%
ATTTAACTCACAAGTGGCAT+GGG + chr6_2:67924944-67924963 None:intergenic 35.0%
AATTTAACTCACAAGTGGCA+TGG + chr6_2:67924945-67924964 None:intergenic 35.0%
TGCTCAATTTAACTCACAAG+TGG + chr6_2:67924950-67924969 None:intergenic 35.0%
CTGGAAATTCTTGACTGAAT+TGG - chr6_2:67925036-67925055 Msa0925160:intron 35.0%
TATGATCATTGGCAAGGATT+TGG + chr6_2:67925250-67925269 None:intergenic 35.0%
TTTATCGTCACAACTCGAAA+AGG + chr6_2:67925323-67925342 None:intergenic 35.0%
! ATTAGCTCTTTGGATTACTG+GGG + chr6_2:67925790-67925809 None:intergenic 35.0%
! GATTAGCTCTTTGGATTACT+GGG + chr6_2:67925791-67925810 None:intergenic 35.0%
!! GAAGAGAGTGTTATCTTTCA+TGG + chr6_2:67925814-67925833 None:intergenic 35.0%
GAGCAATTATTAGGTAGGTT+AGG + chr6_2:67925836-67925855 None:intergenic 35.0%
CTATCAAGGGAGCAATTATT+AGG + chr6_2:67925845-67925864 None:intergenic 35.0%
CAGGACAGAACATAGTTATA+GGG + chr6_2:67925874-67925893 None:intergenic 35.0%
! ATGTTTGGATGGAAGGATTT+TGG - chr6_2:67925896-67925915 Msa0925160:intron 35.0%
! AACGAAGTAGTCTTGAATCT+TGG - chr6_2:67926180-67926199 Msa0925160:intron 35.0%
TTTCATCTACCTTCACTTTG+AGG + chr6_2:67926242-67926261 None:intergenic 35.0%
ATATCCACTAACTGTGATTC+TGG + chr6_2:67926268-67926287 None:intergenic 35.0%
! GATATGACAAGTCTGAGATT+GGG - chr6_2:67926283-67926302 Msa0925160:intron 35.0%
TTGATACCCTTACCTTTGTA+GGG + chr6_2:67926348-67926367 None:intergenic 35.0%
TTTGATACCCTTACCTTTGT+AGG + chr6_2:67926349-67926368 None:intergenic 35.0%
AGATGAAGTTGTAAGGAGAA+AGG - chr6_2:67926374-67926393 Msa0925160:intron 35.0%
CATAGTACGTATCCAACATC+AGG + chr6_2:67923622-67923641 None:intergenic 40.0%
ATGAAGCACAAACTCAGACA+CGG + chr6_2:67923715-67923734 None:intergenic 40.0%
TGACCTAAAACACAACGAAG+TGG - chr6_2:67924059-67924078 Msa0925160:intron 40.0%
AGGATAGGATCTAGTTAACC+AGG - chr6_2:67924100-67924119 Msa0925160:intron 40.0%
ACTAAAACAGATACAGAGCC+TGG + chr6_2:67924121-67924140 None:intergenic 40.0%
CTACCGAATGTAAGGAATCA+CGG - chr6_2:67924357-67924376 Msa0925160:intron 40.0%
GAATGTAAGGAATCACGGAT+TGG - chr6_2:67924362-67924381 Msa0925160:intron 40.0%
GTTAACGAAAGTTCTCCCAA+AGG + chr6_2:67924458-67924477 None:intergenic 40.0%
!! GCAAGAAGAAGGGGTTTTAA+AGG - chr6_2:67924505-67924524 Msa0925160:intron 40.0%
!!! AGGGGTTTTAAAGGTCAGTA+AGG - chr6_2:67924514-67924533 Msa0925160:intron 40.0%
TAAGGCAGTCGAAACTAGAA+GGG - chr6_2:67924532-67924551 Msa0925160:intron 40.0%
AGAAGGGCAAATCAAATGCA+CGG - chr6_2:67924548-67924567 Msa0925160:intron 40.0%
CAGAGAATCTGAATCCTCAT+TGG + chr6_2:67924640-67924659 None:intergenic 40.0%
!! GTCGTTTTGAGCAACTAGAA+TGG + chr6_2:67924749-67924768 None:intergenic 40.0%
ACAAATGAATTGTGTCGGAG+AGG + chr6_2:67924838-67924857 None:intergenic 40.0%
GGACGACAAATGAATTGTGT+CGG + chr6_2:67924843-67924862 None:intergenic 40.0%
! TTTTGCAATCCATGTCATGG+AGG + chr6_2:67924900-67924919 None:intergenic 40.0%
! CTTTTTCTGATTGAAGCCGT+GGG + chr6_2:67925084-67925103 None:intergenic 40.0%
TCTGAGTCGCTAGTATCAAA+CGG - chr6_2:67925173-67925192 Msa0925160:intron 40.0%
TAACTTGACAGTGTGAATGC+AGG - chr6_2:67925203-67925222 Msa0925160:intron 40.0%
AAAAACATAGGCAGCCAAAG+TGG + chr6_2:67925506-67925525 None:intergenic 40.0%
TAGGCTCCATTGAATTTGAC+AGG - chr6_2:67925696-67925715 Msa0925160:intron 40.0%
CTGGTTCCTGTCAAATTCAA+TGG + chr6_2:67925705-67925724 None:intergenic 40.0%
!! GGATTAGCTCTTTGGATTAC+TGG + chr6_2:67925792-67925811 None:intergenic 40.0%
!! CTTTCATGGGATTAGCTCTT+TGG + chr6_2:67925800-67925819 None:intergenic 40.0%
CAAGGGAGCAATTATTAGGT+AGG + chr6_2:67925841-67925860 None:intergenic 40.0%
TATAGGGAGAGAGCTATCAA+GGG + chr6_2:67925858-67925877 None:intergenic 40.0%
TTATAGGGAGAGAGCTATCA+AGG + chr6_2:67925859-67925878 None:intergenic 40.0%
CCAGGACAGAACATAGTTAT+AGG + chr6_2:67925875-67925894 None:intergenic 40.0%
CCTATAACTATGTTCTGTCC+TGG - chr6_2:67925872-67925891 Msa0925160:intron 40.0%
ATGTTCTGTCCTGGTATGTT+TGG - chr6_2:67925881-67925900 Msa0925160:intron 40.0%
! TTTGGATGGAAGGATTTTGG+AGG - chr6_2:67925899-67925918 Msa0925160:intron 40.0%
CTTACGGACAACATAGTGAT+TGG - chr6_2:67926090-67926109 Msa0925160:intron 40.0%
TCAGGGATTGTCATCTTAAC+AGG + chr6_2:67926216-67926235 None:intergenic 40.0%
GTTAAGATGACAATCCCTGA+AGG - chr6_2:67926216-67926235 Msa0925160:intron 40.0%
AACACCAGAATCACAGTTAG+TGG - chr6_2:67926261-67926280 Msa0925160:intron 40.0%
! GGATATGACAAGTCTGAGAT+TGG - chr6_2:67926282-67926301 Msa0925160:intron 40.0%
TTGCGGCTTCGATTAGAAAA+TGG - chr6_2:67926310-67926329 Msa0925160:intron 40.0%
GAAGTTGTAAGGAGAAAGGA+AGG - chr6_2:67926378-67926397 Msa0925160:intron 40.0%
GATTAGGTGTGTCCTGATGT+TGG - chr6_2:67923607-67923626 Msa0925160:CDS 45.0%
!! ATCATGTGTCGGTGTCATGT+TGG + chr6_2:67923652-67923671 None:intergenic 45.0%
! CTTTTGTTGGCGAGAGAAGT+AGG - chr6_2:67924285-67924304 Msa0925160:intron 45.0%
AGTGCTCCTGCTACTCATAT+TGG - chr6_2:67924320-67924339 Msa0925160:intron 45.0%
ACATTGGATGGAACGGGAAT+TGG + chr6_2:67924395-67924414 None:intergenic 45.0%
CTCTCAAGCTTAACTTCTCG+AGG + chr6_2:67924485-67924504 None:intergenic 45.0%
CTCGAGAAGTTAAGCTTGAG+AGG - chr6_2:67924483-67924502 Msa0925160:intron 45.0%
AAGCTTGAGAGGCAAGAAGA+AGG - chr6_2:67924494-67924513 Msa0925160:intron 45.0%
AGCTTGAGAGGCAAGAAGAA+GGG - chr6_2:67924495-67924514 Msa0925160:intron 45.0%
GTAAGGCAGTCGAAACTAGA+AGG - chr6_2:67924531-67924550 Msa0925160:intron 45.0%
GAAGGGCAAATCAAATGCAC+GGG - chr6_2:67924549-67924568 Msa0925160:intron 45.0%
! ATCAAATGCACGGGCTTTTC+AGG - chr6_2:67924558-67924577 Msa0925160:intron 45.0%
AGGTCGAAATAGGGAGAAAG+GGG + chr6_2:67924818-67924837 None:intergenic 45.0%
GAGGTCGAAATAGGGAGAAA+GGG + chr6_2:67924819-67924838 None:intergenic 45.0%
AGAGGTCGAAATAGGGAGAA+AGG + chr6_2:67924820-67924839 None:intergenic 45.0%
CAAGCTTAAGAGGTCTTCTG+TGG + chr6_2:67924873-67924892 None:intergenic 45.0%
TGGAGGATGACAAGCTTAAG+AGG + chr6_2:67924883-67924902 None:intergenic 45.0%
! CAAGTGGCATGGGTTGAAAT+TGG + chr6_2:67924934-67924953 None:intergenic 45.0%
!! GCTTTTTCTGATTGAAGCCG+TGG + chr6_2:67925085-67925104 None:intergenic 45.0%
CAGGAAGAAGTGATGCAGAA+TGG - chr6_2:67925365-67925384 Msa0925160:CDS 45.0%
TCTGTCCTGGTATGTTTGGA+TGG - chr6_2:67925885-67925904 Msa0925160:intron 45.0%
TCCTGGTATGTTTGGATGGA+AGG - chr6_2:67925889-67925908 Msa0925160:intron 45.0%
TCCTTCCATCCAAACATACC+AGG + chr6_2:67925893-67925912 None:intergenic 45.0%
!! TGGAAGGATTTTGGAGGACT+AGG - chr6_2:67925905-67925924 Msa0925160:intron 45.0%
GGTTATCGTGCTATGGTAGA+AGG - chr6_2:67926156-67926175 Msa0925160:intron 45.0%
! TTACCTTTGTAGGGTTCTGG+AGG + chr6_2:67926339-67926358 None:intergenic 45.0%
TCCAGAACCCTACAAAGGTA+AGG - chr6_2:67926338-67926357 Msa0925160:intron 45.0%
CCAGAACCCTACAAAGGTAA+GGG - chr6_2:67926339-67926358 Msa0925160:intron 45.0%
AGGAGAAAGGAAGGAAAAGC+AGG - chr6_2:67926387-67926406 Msa0925160:intron 45.0%
GGAGAAAGGAAGGAAAAGCA+GGG - chr6_2:67926388-67926407 Msa0925160:intron 45.0%
!! TGTCGGTGTCATGTTGGTGT+CGG + chr6_2:67923646-67923665 None:intergenic 50.0%
GCTTGAGAGGCAAGAAGAAG+GGG - chr6_2:67924496-67924515 Msa0925160:intron 50.0%
GTGTCGGAGAGGTCGAAATA+GGG + chr6_2:67924827-67924846 None:intergenic 50.0%
TGTGTCGGAGAGGTCGAAAT+AGG + chr6_2:67924828-67924847 None:intergenic 50.0%
GAGGTCTTCTGTGGAAGACA+AGG + chr6_2:67924864-67924883 None:intergenic 50.0%
GCTTGTCATCCTCCATGACA+TGG - chr6_2:67924888-67924907 Msa0925160:intron 50.0%
TGGGAAAGAGTTCGAAGAGG+TGG + chr6_2:67925065-67925084 None:intergenic 50.0%
CCTCTTCGAACTCTTTCCCA+CGG - chr6_2:67925065-67925084 Msa0925160:intron 50.0%
!! TGGTGTCGGTTATCGTGCTA+TGG - chr6_2:67926149-67926168 Msa0925160:intron 50.0%
!! CCTTCACTTTGAGGCCTTCA+GGG + chr6_2:67926233-67926252 None:intergenic 50.0%
!! ACCTTCACTTTGAGGCCTTC+AGG + chr6_2:67926234-67926253 None:intergenic 50.0%
! GTCTGAGATTGGGCAGTTTG+CGG - chr6_2:67926293-67926312 Msa0925160:intron 50.0%
AGACCTCCAGAACCCTACAA+AGG - chr6_2:67926333-67926352 Msa0925160:intron 50.0%
CCCTTACCTTTGTAGGGTTC+TGG + chr6_2:67926342-67926361 None:intergenic 50.0%
CCGTGGGAAAGAGTTCGAAG+AGG + chr6_2:67925068-67925087 None:intergenic 55.0%
CCCTGAAGGCCTCAAAGTGA+AGG - chr6_2:67926230-67926249 Msa0925160:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 67923382 67926422 67923382 ID=Msa0925160;Name=Msa0925160
chr6_2 mRNA 67923382 67926422 67923382 ID=Msa0925160-mRNA-1;Parent=Msa0925160;Name=Msa0925160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|0.66|0.75|4|0|191
chr6_2 exon 67926415 67926422 67926415 ID=Msa0925160-mRNA-1:exon:10771;Parent=Msa0925160-mRNA-1
chr6_2 exon 67925591 67925597 67925591 ID=Msa0925160-mRNA-1:exon:10770;Parent=Msa0925160-mRNA-1
chr6_2 exon 67925225 67925448 67925225 ID=Msa0925160-mRNA-1:exon:10769;Parent=Msa0925160-mRNA-1
chr6_2 exon 67923382 67923718 67923382 ID=Msa0925160-mRNA-1:exon:10768;Parent=Msa0925160-mRNA-1
chr6_2 CDS 67926415 67926422 67926415 ID=Msa0925160-mRNA-1:cds;Parent=Msa0925160-mRNA-1
chr6_2 CDS 67925591 67925597 67925591 ID=Msa0925160-mRNA-1:cds;Parent=Msa0925160-mRNA-1
chr6_2 CDS 67925225 67925448 67925225 ID=Msa0925160-mRNA-1:cds;Parent=Msa0925160-mRNA-1
chr6_2 CDS 67923382 67923718 67923382 ID=Msa0925160-mRNA-1:cds;Parent=Msa0925160-mRNA-1
Gene Sequence

>Msa0925160

ATGATGATTTTCAAAACTACCGAATGTAAGGAATCACGGATTGGGAAACAACCAATTCCCGTTCCATCCAATGTAACTATCAAAATGGAAGGGCAATATTTACAAGTGAAAGGTCCTTTGGGAGAACTTTCGTTAACTTATCCTCGAGAAGTTAAGCTTGAGAGGCAAGAAGAAGGGGTTTTAAAGGTCAGTAAGGCAGTCGAAACTAGAAGGGCAAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAACATAGTGATTGGAGTATCTAAAGGTTTTGAAAAGAAACTTCAACTTATTGGTGTCGGTTATCGTGCTATGGTAGAAGGAAACGAAGTAGTCTTGAATCTTGGATTTTCTCATCCTGTTAAGATGACAATCCCTGAAGGCCTCAAAGTGAAGGTAGATGAAAACACCAGAATCACAGTTAGTGGATATGACAAGTCTGAGATTGGGCAGTTTGCGGCTTCGATTAGAAAATGGAGACCTCCAGAACCCTACAAAGGTAAGGGTATCAAATATGAAGATGAAGTTGTAAGGAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGA

Protein sequence

>Msa0925160

MMIFKTTECKESRIGKQPIPVPSNVTIKMEGQYLQVKGPLGELSLTYPREVKLERQEEGVLKVSKAVETRRANQMHGLFRTLTDNIVIGVSKGFEKKLQLIGVGYRAMVEGNEVVLNLGFSHPVKMTIPEGLKVKVDENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGIKYEDEVVRRKEGKAGKKK*