AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002040 MtrunA17_Chr6g0475281 93.220 118 7 1 1 118 57 173 6.69e-76 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002040 AT5G51720.1 75.610 82 18 1 37 118 28 107 5.61e-42 134

Find 36 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCACTCTTCCTTATATC+TGG 0.212325 6_4:+86646606 None:intergenic
ATTTCTTATTTATTGAATTA+AGG 0.257072 6_4:-86645228 Msa1002040:three_prime_UTR
GAACTTTGCAATAAGGTAGA+TGG 0.326744 6_4:+86646851 None:intergenic
AAAGGAACTAGTGTTGAAAT+TGG 0.341338 6_4:+86646698 None:intergenic
AATTTCAACACTAGTTCCTT+TGG 0.378332 6_4:-86646696 Msa1002040:CDS
ACTGAACCATACCTGCAATA+AGG 0.381259 6_4:+86646534 None:intergenic
AGTGTGCTATCCACAAGTTC+AGG 0.386917 6_4:-86646904 None:intergenic
TGGCTTTGTTGTGCTTTACA+TGG 0.398604 6_4:+86645421 None:intergenic
TCTCACTTAAACATGGCTTT+TGG 0.402198 6_4:+86646742 None:intergenic
TATAAGGAAGAGTGAAGAAA+AGG 0.402584 6_4:-86646601 Msa1002040:CDS
AACACTAGTTCCTTTGGTAT+TGG 0.404546 6_4:-86646690 Msa1002040:CDS
AGGCTGTTACACCTTATTGC+AGG 0.425079 6_4:-86646545 Msa1002040:intron
GTAGCATAAATCCAGATATA+AGG 0.427754 6_4:-86646617 Msa1002040:CDS
TGATACAGATGCTGGAGATC+AGG 0.452783 6_4:-86645468 Msa1002040:intron
CAGACATAACATTTCAATGT+TGG 0.459795 6_4:-86645298 Msa1002040:three_prime_UTR
GGCACAAAACTACACCAACT+TGG 0.466620 6_4:+86646763 None:intergenic
GTGGTGGTGAAAGCAGAGAC+AGG 0.472527 6_4:-86646648 Msa1002040:CDS
AAGCCACTGGAGATAATGTT+GGG 0.514803 6_4:-86645404 Msa1002040:CDS
GCAATAAGGTGTAACAGCCT+TGG 0.525200 6_4:+86646548 None:intergenic
AAAGCCACTGGAGATAATGT+TGG 0.533290 6_4:-86645405 Msa1002040:CDS
GTGTGCTATCCACAAGTTCA+GGG 0.549346 6_4:-86646903 None:intergenic
CTAGTTCCTTTGGTATTGGT+AGG 0.550489 6_4:-86646686 Msa1002040:CDS
GAAAGCAAGAAGTGTGGTGG+TGG 0.552869 6_4:-86646664 Msa1002040:CDS
TACATGTGTCCCTGAACTTG+TGG 0.559183 6_4:+86646894 None:intergenic
GGAACCTTTCCTCTGTGTGA+TGG 0.562888 6_4:-86645447 Msa1002040:CDS
GTAAAGCACAACAAAGCCAC+TGG 0.579483 6_4:-86645417 Msa1002040:CDS
TGCTTTCCTACCAATACCAA+AGG 0.582424 6_4:+86646680 None:intergenic
TGTGCTCAGTGAAGTCTCCA+AGG 0.596449 6_4:-86646565 Msa1002040:CDS
TGGTGGTGAAAGCAGAGACA+GGG 0.597940 6_4:-86646647 Msa1002040:CDS
GCTTCCATCACACAGAGGAA+AGG 0.616730 6_4:+86645443 None:intergenic
AGGCCCAACATTATCTCCAG+TGG 0.629442 6_4:+86645401 None:intergenic
TGGTAGGAAAGCAAGAAGTG+TGG 0.633825 6_4:-86646670 Msa1002040:CDS
GGTGGTGAAAGCAGAGACAG+GGG 0.666105 6_4:-86646646 Msa1002040:CDS
TAGGAAAGCAAGAAGTGTGG+TGG 0.698142 6_4:-86646667 Msa1002040:CDS
GTGGTGAAAGCAGAGACAGG+GGG 0.706898 6_4:-86646645 Msa1002040:CDS
ACATGGCTTCCATCACACAG+AGG 0.761842 6_4:+86645438 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTTCATTTATTTA+TGG - chr6_4:86645590-86645609 Msa1002040:intron 10.0%
!!! ATTTCTTATTTATTGAATTA+AGG - chr6_4:86646870-86646889 Msa1002040:five_prime_UTR 10.0%
!!! TTATGTTTTTCATTTATTTA+TGG - chr6_4:86645590-86645609 Msa1002040:intron 10.0%
!!! ATTTCTTATTTATTGAATTA+AGG - chr6_4:86646870-86646889 Msa1002040:five_prime_UTR 10.0%
!! CAATAATCAAATTTCAATAA+TGG + chr6_4:86645681-86645700 None:intergenic 15.0%
!! CATTATTGAAATTTGATTAT+TGG - chr6_4:86645679-86645698 Msa1002040:intron 15.0%
!! CAATAATCAAATTTCAATAA+TGG + chr6_4:86645681-86645700 None:intergenic 15.0%
!! CATTATTGAAATTTGATTAT+TGG - chr6_4:86645679-86645698 Msa1002040:intron 15.0%
!!! TGATTATTGGTTAATTTATG+TGG - chr6_4:86645692-86645711 Msa1002040:intron 20.0%
!! CTAAATTCAATAAACTATGT+AGG + chr6_4:86645739-86645758 None:intergenic 20.0%
!! TATCACAAATTAACAATGTT+TGG - chr6_4:86646082-86646101 Msa1002040:intron 20.0%
!! TATGCTTCTATAATATATGT+TGG - chr6_4:86646405-86646424 Msa1002040:intron 20.0%
!!! AGAAAGATTAAGATTTGTTT+TGG + chr6_4:86646596-86646615 None:intergenic 20.0%
!! AAAACAAATCTTAATCTTTC+TGG - chr6_4:86646595-86646614 Msa1002040:CDS 20.0%
!!! GAAAAAAAATCAATTTTCAG+AGG - chr6_4:86646765-86646784 Msa1002040:CDS 20.0%
!!! TGATTATTGGTTAATTTATG+TGG - chr6_4:86645692-86645711 Msa1002040:intron 20.0%
!! CTAAATTCAATAAACTATGT+AGG + chr6_4:86645739-86645758 None:intergenic 20.0%
!! TATCACAAATTAACAATGTT+TGG - chr6_4:86646082-86646101 Msa1002040:intron 20.0%
!! TATGCTTCTATAATATATGT+TGG - chr6_4:86646405-86646424 Msa1002040:intron 20.0%
!!! AGAAAGATTAAGATTTGTTT+TGG + chr6_4:86646596-86646615 None:intergenic 20.0%
!! AAAACAAATCTTAATCTTTC+TGG - chr6_4:86646595-86646614 Msa1002040:CDS 20.0%
!!! GAAAAAAAATCAATTTTCAG+AGG - chr6_4:86646765-86646784 Msa1002040:CDS 20.0%
!!! AAGTTTTGAACTTTGCAATA+AGG + chr6_4:86645257-86645276 None:intergenic 25.0%
!! TTTTGTGTTTATCTTCTCTT+TGG + chr6_4:86645286-86645305 None:intergenic 25.0%
! CACAAAAAATTCATACTCAA+TGG - chr6_4:86645299-86645318 Msa1002040:three_prime_UTR 25.0%
!!! TTTTTTCTCTCACTTAAACA+TGG + chr6_4:86645366-86645385 None:intergenic 25.0%
! ATGTTTAAGTGAGAGAAAAA+AGG - chr6_4:86645365-86645384 Msa1002040:exon 25.0%
! TGTTTAAGTGAGAGAAAAAA+GGG - chr6_4:86645366-86645385 Msa1002040:exon 25.0%
! TGATATTAGATGAATGATTC+TGG - chr6_4:86645929-86645948 Msa1002040:intron 25.0%
!! GCATTTTGTATATGATAATC+TGG - chr6_4:86646125-86646144 Msa1002040:intron 25.0%
!! ATGATAATCTGGAATAATGT+CGG - chr6_4:86646136-86646155 Msa1002040:intron 25.0%
! CCATTAATAAGTTCTTTATG+TGG + chr6_4:86646370-86646389 None:intergenic 25.0%
! CCACATAAAGAACTTATTAA+TGG - chr6_4:86646367-86646386 Msa1002040:intron 25.0%
!!! AATCTTAATCTTTCTGGTTT+TGG - chr6_4:86646601-86646620 Msa1002040:CDS 25.0%
!!! ATCTTAATCTTTCTGGTTTT+GGG - chr6_4:86646602-86646621 Msa1002040:CDS 25.0%
!!! CTCTATTTTTTCAAAAGAAG+AGG + chr6_4:86646720-86646739 None:intergenic 25.0%
!!! AAGTTTTGAACTTTGCAATA+AGG + chr6_4:86645257-86645276 None:intergenic 25.0%
!! TTTTGTGTTTATCTTCTCTT+TGG + chr6_4:86645286-86645305 None:intergenic 25.0%
! CACAAAAAATTCATACTCAA+TGG - chr6_4:86645299-86645318 Msa1002040:three_prime_UTR 25.0%
!!! TTTTTTCTCTCACTTAAACA+TGG + chr6_4:86645366-86645385 None:intergenic 25.0%
! ATGTTTAAGTGAGAGAAAAA+AGG - chr6_4:86645365-86645384 Msa1002040:exon 25.0%
! TGTTTAAGTGAGAGAAAAAA+GGG - chr6_4:86645366-86645385 Msa1002040:exon 25.0%
! TGATATTAGATGAATGATTC+TGG - chr6_4:86645929-86645948 Msa1002040:intron 25.0%
!! GCATTTTGTATATGATAATC+TGG - chr6_4:86646125-86646144 Msa1002040:intron 25.0%
!! ATGATAATCTGGAATAATGT+CGG - chr6_4:86646136-86646155 Msa1002040:intron 25.0%
! CCATTAATAAGTTCTTTATG+TGG + chr6_4:86646370-86646389 None:intergenic 25.0%
! CCACATAAAGAACTTATTAA+TGG - chr6_4:86646367-86646386 Msa1002040:intron 25.0%
!!! AATCTTAATCTTTCTGGTTT+TGG - chr6_4:86646601-86646620 Msa1002040:CDS 25.0%
!!! ATCTTAATCTTTCTGGTTTT+GGG - chr6_4:86646602-86646621 Msa1002040:CDS 25.0%
!!! CTCTATTTTTTCAAAAGAAG+AGG + chr6_4:86646720-86646739 None:intergenic 25.0%
GAGAGAAAAAAGGGAATTAT+AGG - chr6_4:86645375-86645394 Msa1002040:exon 30.0%
! AAAGGAACTAGTGTTGAAAT+TGG + chr6_4:86645403-86645422 None:intergenic 30.0%
AATTTCAACACTAGTTCCTT+TGG - chr6_4:86645402-86645421 Msa1002040:CDS 30.0%
GTAGCATAAATCCAGATATA+AGG - chr6_4:86645481-86645500 Msa1002040:intron 30.0%
TATAAGGAAGAGTGAAGAAA+AGG - chr6_4:86645497-86645516 Msa1002040:intron 30.0%
TATGGTTAAGTGTATCATTG+TGG - chr6_4:86645608-86645627 Msa1002040:intron 30.0%
TGATTGATTACATCTGTTTC+TGG - chr6_4:86646007-86646026 Msa1002040:intron 30.0%
! TGATAATCTGGAATAATGTC+GGG - chr6_4:86646137-86646156 Msa1002040:intron 30.0%
GAATCTCTTGTTGAGAAATT+AGG - chr6_4:86646179-86646198 Msa1002040:intron 30.0%
TGAGAAATTAGGATGTTGAT+AGG - chr6_4:86646190-86646209 Msa1002040:intron 30.0%
TTATGTGGAATCTACTAACT+GGG + chr6_4:86646355-86646374 None:intergenic 30.0%
TTTATGTGGAATCTACTAAC+TGG + chr6_4:86646356-86646375 None:intergenic 30.0%
GCTTCTATAATATATGTTGG+TGG - chr6_4:86646408-86646427 Msa1002040:intron 30.0%
CAGACATAACATTTCAATGT+TGG - chr6_4:86646800-86646819 Msa1002040:exon 30.0%
GAGAGAAAAAAGGGAATTAT+AGG - chr6_4:86645375-86645394 Msa1002040:exon 30.0%
! AAAGGAACTAGTGTTGAAAT+TGG + chr6_4:86645403-86645422 None:intergenic 30.0%
AATTTCAACACTAGTTCCTT+TGG - chr6_4:86645402-86645421 Msa1002040:CDS 30.0%
GTAGCATAAATCCAGATATA+AGG - chr6_4:86645481-86645500 Msa1002040:intron 30.0%
TATAAGGAAGAGTGAAGAAA+AGG - chr6_4:86645497-86645516 Msa1002040:intron 30.0%
TATGGTTAAGTGTATCATTG+TGG - chr6_4:86645608-86645627 Msa1002040:intron 30.0%
TGATTGATTACATCTGTTTC+TGG - chr6_4:86646007-86646026 Msa1002040:intron 30.0%
! TGATAATCTGGAATAATGTC+GGG - chr6_4:86646137-86646156 Msa1002040:intron 30.0%
GAATCTCTTGTTGAGAAATT+AGG - chr6_4:86646179-86646198 Msa1002040:intron 30.0%
TGAGAAATTAGGATGTTGAT+AGG - chr6_4:86646190-86646209 Msa1002040:intron 30.0%
TTATGTGGAATCTACTAACT+GGG + chr6_4:86646355-86646374 None:intergenic 30.0%
TTTATGTGGAATCTACTAAC+TGG + chr6_4:86646356-86646375 None:intergenic 30.0%
GCTTCTATAATATATGTTGG+TGG - chr6_4:86646408-86646427 Msa1002040:intron 30.0%
CAGACATAACATTTCAATGT+TGG - chr6_4:86646800-86646819 Msa1002040:exon 30.0%
GAACTTTGCAATAAGGTAGA+TGG + chr6_4:86645250-86645269 None:intergenic 35.0%
! TCTCACTTAAACATGGCTTT+TGG + chr6_4:86645359-86645378 None:intergenic 35.0%
AACACTAGTTCCTTTGGTAT+TGG - chr6_4:86645408-86645427 Msa1002040:CDS 35.0%
TCTTCACTCTTCCTTATATC+TGG + chr6_4:86645495-86645514 None:intergenic 35.0%
CTCTCAAATAGTTTCACAAG+TGG - chr6_4:86645802-86645821 Msa1002040:intron 35.0%
!! ATTACATCTGTTTCTGGAAG+TGG - chr6_4:86646013-86646032 Msa1002040:intron 35.0%
! GATAATCTGGAATAATGTCG+GGG - chr6_4:86646138-86646157 Msa1002040:intron 35.0%
! ACATAAGCAGGATTTTTACG+TGG + chr6_4:86646218-86646237 None:intergenic 35.0%
TTTGTCGAATCTCTATAACG+TGG - chr6_4:86646312-86646331 Msa1002040:intron 35.0%
GAACTTTGCAATAAGGTAGA+TGG + chr6_4:86645250-86645269 None:intergenic 35.0%
! TCTCACTTAAACATGGCTTT+TGG + chr6_4:86645359-86645378 None:intergenic 35.0%
AACACTAGTTCCTTTGGTAT+TGG - chr6_4:86645408-86645427 Msa1002040:CDS 35.0%
TCTTCACTCTTCCTTATATC+TGG + chr6_4:86645495-86645514 None:intergenic 35.0%
CTCTCAAATAGTTTCACAAG+TGG - chr6_4:86645802-86645821 Msa1002040:intron 35.0%
!! ATTACATCTGTTTCTGGAAG+TGG - chr6_4:86646013-86646032 Msa1002040:intron 35.0%
! GATAATCTGGAATAATGTCG+GGG - chr6_4:86646138-86646157 Msa1002040:intron 35.0%
! ACATAAGCAGGATTTTTACG+TGG + chr6_4:86646218-86646237 None:intergenic 35.0%
TTTGTCGAATCTCTATAACG+TGG - chr6_4:86646312-86646331 Msa1002040:intron 35.0%
!! GCATCTGTTTTAAGCCAAGT+TGG - chr6_4:86645321-86645340 Msa1002040:three_prime_UTR 40.0%
!! CTAGTTCCTTTGGTATTGGT+AGG - chr6_4:86645412-86645431 Msa1002040:CDS 40.0%
TGCTTTCCTACCAATACCAA+AGG + chr6_4:86645421-86645440 None:intergenic 40.0%
GTTACACCTTATTGCAGGTA+TGG - chr6_4:86645558-86645577 Msa1002040:intron 40.0%
ACTGAACCATACCTGCAATA+AGG + chr6_4:86645567-86645586 None:intergenic 40.0%
TAACGAGGCTTAACATAAGC+AGG + chr6_4:86646230-86646249 None:intergenic 40.0%
TAAGCCTCGTTATACATTGC+CGG - chr6_4:86646238-86646257 Msa1002040:intron 40.0%
! ACAACCCTCTCCTTTTACTT+GGG + chr6_4:86646265-86646284 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+AGG - chr6_4:86646268-86646287 Msa1002040:intron 40.0%
!! AAGTTTTACGTTGACTGTCG+AGG + chr6_4:86646294-86646313 None:intergenic 40.0%
TGGAATCTACTAACTGGGAT+CGG + chr6_4:86646350-86646369 None:intergenic 40.0%
!! TGGCTTTGTTGTGCTTTACA+TGG + chr6_4:86646680-86646699 None:intergenic 40.0%
AAAGCCACTGGAGATAATGT+TGG - chr6_4:86646693-86646712 Msa1002040:CDS 40.0%
AAGCCACTGGAGATAATGTT+GGG - chr6_4:86646694-86646713 Msa1002040:CDS 40.0%
!! GCATCTGTTTTAAGCCAAGT+TGG - chr6_4:86645321-86645340 Msa1002040:three_prime_UTR 40.0%
!! CTAGTTCCTTTGGTATTGGT+AGG - chr6_4:86645412-86645431 Msa1002040:CDS 40.0%
TGCTTTCCTACCAATACCAA+AGG + chr6_4:86645421-86645440 None:intergenic 40.0%
GTTACACCTTATTGCAGGTA+TGG - chr6_4:86645558-86645577 Msa1002040:intron 40.0%
ACTGAACCATACCTGCAATA+AGG + chr6_4:86645567-86645586 None:intergenic 40.0%
TAACGAGGCTTAACATAAGC+AGG + chr6_4:86646230-86646249 None:intergenic 40.0%
TAAGCCTCGTTATACATTGC+CGG - chr6_4:86646238-86646257 Msa1002040:intron 40.0%
! ACAACCCTCTCCTTTTACTT+GGG + chr6_4:86646265-86646284 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+AGG - chr6_4:86646268-86646287 Msa1002040:intron 40.0%
!! AAGTTTTACGTTGACTGTCG+AGG + chr6_4:86646294-86646313 None:intergenic 40.0%
TGGAATCTACTAACTGGGAT+CGG + chr6_4:86646350-86646369 None:intergenic 40.0%
!! TGGCTTTGTTGTGCTTTACA+TGG + chr6_4:86646680-86646699 None:intergenic 40.0%
AAAGCCACTGGAGATAATGT+TGG - chr6_4:86646693-86646712 Msa1002040:CDS 40.0%
AAGCCACTGGAGATAATGTT+GGG - chr6_4:86646694-86646713 Msa1002040:CDS 40.0%
TACATGTGTCCCTGAACTTG+TGG + chr6_4:86645207-86645226 None:intergenic 45.0%
GGCACAAAACTACACCAACT+TGG + chr6_4:86645338-86645357 None:intergenic 45.0%
TGGTAGGAAAGCAAGAAGTG+TGG - chr6_4:86645428-86645447 Msa1002040:CDS 45.0%
! TAGGAAAGCAAGAAGTGTGG+TGG - chr6_4:86645431-86645450 Msa1002040:CDS 45.0%
GCAATAAGGTGTAACAGCCT+TGG + chr6_4:86645553-86645572 None:intergenic 45.0%
AGGCTGTTACACCTTATTGC+AGG - chr6_4:86645553-86645572 Msa1002040:intron 45.0%
! CACAACCCTCTCCTTTTACT+TGG + chr6_4:86646266-86646285 None:intergenic 45.0%
TGATACAGATGCTGGAGATC+AGG - chr6_4:86646630-86646649 Msa1002040:CDS 45.0%
GTAAAGCACAACAAAGCCAC+TGG - chr6_4:86646681-86646700 Msa1002040:CDS 45.0%
TACATGTGTCCCTGAACTTG+TGG + chr6_4:86645207-86645226 None:intergenic 45.0%
GGCACAAAACTACACCAACT+TGG + chr6_4:86645338-86645357 None:intergenic 45.0%
TGGTAGGAAAGCAAGAAGTG+TGG - chr6_4:86645428-86645447 Msa1002040:CDS 45.0%
! TAGGAAAGCAAGAAGTGTGG+TGG - chr6_4:86645431-86645450 Msa1002040:CDS 45.0%
GCAATAAGGTGTAACAGCCT+TGG + chr6_4:86645553-86645572 None:intergenic 45.0%
AGGCTGTTACACCTTATTGC+AGG - chr6_4:86645553-86645572 Msa1002040:intron 45.0%
! CACAACCCTCTCCTTTTACT+TGG + chr6_4:86646266-86646285 None:intergenic 45.0%
TGATACAGATGCTGGAGATC+AGG - chr6_4:86646630-86646649 Msa1002040:CDS 45.0%
GTAAAGCACAACAAAGCCAC+TGG - chr6_4:86646681-86646700 Msa1002040:CDS 45.0%
! GAAAGCAAGAAGTGTGGTGG+TGG - chr6_4:86645434-86645453 Msa1002040:CDS 50.0%
! TGGTGGTGAAAGCAGAGACA+GGG - chr6_4:86645451-86645470 Msa1002040:CDS 50.0%
TGTGCTCAGTGAAGTCTCCA+AGG - chr6_4:86645533-86645552 Msa1002040:intron 50.0%
CATTGCCGGTCCCAAGTAAA+AGG - chr6_4:86646252-86646271 Msa1002040:intron 50.0%
! CCTCTCCTTTTACTTGGGAC+CGG + chr6_4:86646260-86646279 None:intergenic 50.0%
CGGTCCCAAGTAAAAGGAGA+GGG - chr6_4:86646258-86646277 Msa1002040:intron 50.0%
GGGTGCTTTGATACAGATGC+TGG - chr6_4:86646622-86646641 Msa1002040:CDS 50.0%
GGAACCTTTCCTCTGTGTGA+TGG - chr6_4:86646651-86646670 Msa1002040:CDS 50.0%
GCTTCCATCACACAGAGGAA+AGG + chr6_4:86646658-86646677 None:intergenic 50.0%
ACATGGCTTCCATCACACAG+AGG + chr6_4:86646663-86646682 None:intergenic 50.0%
AGGCCCAACATTATCTCCAG+TGG + chr6_4:86646700-86646719 None:intergenic 50.0%
! GAAAGCAAGAAGTGTGGTGG+TGG - chr6_4:86645434-86645453 Msa1002040:CDS 50.0%
! TGGTGGTGAAAGCAGAGACA+GGG - chr6_4:86645451-86645470 Msa1002040:CDS 50.0%
TGTGCTCAGTGAAGTCTCCA+AGG - chr6_4:86645533-86645552 Msa1002040:intron 50.0%
CATTGCCGGTCCCAAGTAAA+AGG - chr6_4:86646252-86646271 Msa1002040:intron 50.0%
! CCTCTCCTTTTACTTGGGAC+CGG + chr6_4:86646260-86646279 None:intergenic 50.0%
CGGTCCCAAGTAAAAGGAGA+GGG - chr6_4:86646258-86646277 Msa1002040:intron 50.0%
GGGTGCTTTGATACAGATGC+TGG - chr6_4:86646622-86646641 Msa1002040:CDS 50.0%
GGAACCTTTCCTCTGTGTGA+TGG - chr6_4:86646651-86646670 Msa1002040:CDS 50.0%
GCTTCCATCACACAGAGGAA+AGG + chr6_4:86646658-86646677 None:intergenic 50.0%
ACATGGCTTCCATCACACAG+AGG + chr6_4:86646663-86646682 None:intergenic 50.0%
AGGCCCAACATTATCTCCAG+TGG + chr6_4:86646700-86646719 None:intergenic 50.0%
! GTGGTGGTGAAAGCAGAGAC+AGG - chr6_4:86645450-86645469 Msa1002040:CDS 55.0%
GGTGGTGAAAGCAGAGACAG+GGG - chr6_4:86645452-86645471 Msa1002040:CDS 55.0%
GTGGTGAAAGCAGAGACAGG+GGG - chr6_4:86645453-86645472 Msa1002040:CDS 55.0%
! AAAGCAGAGACAGGGGGTGT+GGG - chr6_4:86645459-86645478 Msa1002040:CDS 55.0%
GGGACCGGCAATGTATAACG+AGG + chr6_4:86646245-86646264 None:intergenic 55.0%
CCGGTCCCAAGTAAAAGGAG+AGG - chr6_4:86646257-86646276 Msa1002040:intron 55.0%
! GTGGTGGTGAAAGCAGAGAC+AGG - chr6_4:86645450-86645469 Msa1002040:CDS 55.0%
GGTGGTGAAAGCAGAGACAG+GGG - chr6_4:86645452-86645471 Msa1002040:CDS 55.0%
GTGGTGAAAGCAGAGACAGG+GGG - chr6_4:86645453-86645472 Msa1002040:CDS 55.0%
! AAAGCAGAGACAGGGGGTGT+GGG - chr6_4:86645459-86645478 Msa1002040:CDS 55.0%
GGGACCGGCAATGTATAACG+AGG + chr6_4:86646245-86646264 None:intergenic 55.0%
CCGGTCCCAAGTAAAAGGAG+AGG - chr6_4:86646257-86646276 Msa1002040:intron 55.0%
GAAAGCAGAGACAGGGGGTG+TGG - chr6_4:86645458-86645477 Msa1002040:CDS 60.0%
GAAAGCAGAGACAGGGGGTG+TGG - chr6_4:86645458-86645477 Msa1002040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 86645199 86646921 86645199 ID=Msa1002040;Name=Msa1002040
chr6_4 mRNA 86645199 86646921 86645199 ID=Msa1002040-mRNA-1;Parent=Msa1002040;Name=Msa1002040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=119|1|1|1|1|1|2|184|118
chr6_4 exon 86645199 86645482 86645199 ID=Msa1002040-mRNA-1:exon:17011;Parent=Msa1002040-mRNA-1
chr6_4 exon 86646546 86646921 86646546 ID=Msa1002040-mRNA-1:exon:17010;Parent=Msa1002040-mRNA-1
chr6_4 five_prime_UTR 86646803 86646921 86646803 ID=Msa1002040-mRNA-1:five_prime_utr;Parent=Msa1002040-mRNA-1
chr6_4 CDS 86646546 86646802 86646546 ID=Msa1002040-mRNA-1:cds;Parent=Msa1002040-mRNA-1
chr6_4 CDS 86645383 86645482 86645383 ID=Msa1002040-mRNA-1:cds;Parent=Msa1002040-mRNA-1
chr6_4 three_prime_UTR 86645199 86645382 86645199 ID=Msa1002040-mRNA-1:three_prime_utr;Parent=Msa1002040-mRNA-1
Gene Sequence

>Msa1002040

ATGGCATCTGTTTTAAGCCAAGTTGGTGTAGTTTTGTGCCAAAAGCCATGTTTAAGTGAGAGAAAAAAGGGAATTATAGGTACCAATTTCAACACTAGTTCCTTTGGTATTGGTAGGAAAGCAAGAAGTGTGGTGGTGGTGAAAGCAGAGACAGGGGGTGTGGGTAGCATAAATCCAGATATAAGGAAGAGTGAAGAAAAGGTTGTTGATGCTGTTGTGCTCAGTGAAGTCTCCAAGGCTGTTACACCTTATTGCAGATGCTGGAGATCAGGAACCTTTCCTCTGTGTGATGGAAGCCATGTAAAGCACAACAAAGCCACTGGAGATAATGTTGGGCCTCTTCTTTTGAAAAAATAG

Protein sequence

>Msa1002040

MASVLSQVGVVLCQKPCLSERKKGIIGTNFNTSSFGIGRKARSVVVVKAETGGVGSINPDIRKSEEKVVDAVVLSEVSKAVTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK*