AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073650 MtrunA17_Chr1g0181111 98.214 280 5 0 1 280 1 280 0.0 549
Msa0073650 MtrunA17_Chr4g0058151 50.739 203 76 2 81 280 119 300 4.87e-61 195
Msa0073650 MtrunA17_Chr3g0116631 41.781 292 137 7 3 278 14 288 9.29e-60 191
Msa0073650 MtrunA17_Chr7g0267571 37.762 286 135 7 12 275 27 291 3.52e-49 165
Msa0073650 MtrunA17_Chr1g0177101 41.270 189 98 1 84 272 108 283 1.01e-44 153
Msa0073650 MtrunA17_Chr3g0087481 36.111 252 127 6 27 272 12 235 6.69e-37 131
Msa0073650 MtrunA17_Chr1g0168601 37.500 168 84 2 108 275 86 232 5.05e-35 126
Msa0073650 MtrunA17_Chr1g0168601 39.189 74 45 0 85 158 154 227 8.32e-12 63.5
Msa0073650 MtrunA17_Chr4g0035001 50.617 81 40 0 192 272 2 82 2.96e-22 90.5
Msa0073650 MtrunA17_Chr4g0035001 40.541 74 44 0 85 158 7 80 1.50e-11 61.6
Msa0073650 MtrunA17_Chr4g0035051 47.561 82 43 0 191 272 3 84 5.57e-21 85.9
Msa0073650 MtrunA17_Chr4g0035051 41.892 74 43 0 85 158 9 82 6.51e-12 61.2
Msa0073650 MtrunA17_Chr4g0035031 50.588 85 42 0 190 274 2 86 8.19e-21 87.4
Msa0073650 MtrunA17_Chr4g0035031 43.243 74 42 0 85 158 9 82 2.68e-13 67.0
Msa0073650 MtrunA17_Chr4g0061451 48.148 81 42 0 197 277 43 123 8.23e-21 89.4
Msa0073650 MtrunA17_Chr4g0061451 41.667 84 49 0 81 164 39 122 1.54e-14 72.0
Msa0073650 MtrunA17_Chr3g0121631 50.602 83 40 1 194 276 34 115 9.55e-20 83.6
Msa0073650 MtrunA17_Chr3g0121631 42.466 73 41 1 85 157 37 108 6.66e-11 59.3
Msa0073650 MtrunA17_Chr3g0086861 46.667 90 48 0 191 280 39 128 1.33e-19 88.2
Msa0073650 MtrunA17_Chr3g0086861 39.744 78 47 0 81 158 41 118 1.32e-11 64.3
Msa0073650 MtrunA17_Chr2g0288251 30.366 191 115 3 86 275 62 235 3.08e-19 86.7
Msa0073650 MtrunA17_Chr2g0288251 30.570 193 114 6 82 270 153 329 3.80e-16 77.8
Msa0073650 MtrunA17_Chr2g0328791 32.143 196 107 6 86 278 17 189 4.42e-19 86.3
Msa0073650 MtrunA17_Chr2g0328791 27.273 231 134 7 70 279 94 311 2.14e-13 69.7
Msa0073650 MtrunA17_Chr4g0074711 28.899 218 128 7 70 279 153 351 2.67e-18 84.0
Msa0073650 MtrunA17_Chr4g0074711 29.231 195 114 4 84 275 74 247 5.33e-17 80.5
Msa0073650 MtrunA17_Chr3g0119311 43.902 82 46 0 196 277 36 117 3.60e-18 79.0
Msa0073650 MtrunA17_Chr3g0119311 41.250 80 47 0 85 164 37 116 9.69e-15 69.7
Msa0073650 MtrunA17_Chr7g0219021 40.476 84 50 0 197 280 41 124 6.91e-18 80.9
Msa0073650 MtrunA17_Chr7g0219021 41.892 74 43 0 85 158 41 114 1.06e-13 69.3
Msa0073650 MtrunA17_Chr2g0290191 29.101 189 121 5 85 272 5 181 1.16e-17 82.4
Msa0073650 MtrunA17_Chr3g0133651 30.612 196 113 5 83 275 92 267 1.51e-17 82.0
Msa0073650 MtrunA17_Chr3g0133651 28.037 214 136 6 70 280 172 370 1.85e-16 79.0
Msa0073650 MtrunA17_Chr1g0153871 29.064 203 127 5 70 270 176 363 3.50e-17 80.9
Msa0073650 MtrunA17_Chr1g0153871 28.866 194 118 3 83 275 96 270 3.20e-16 78.2
Msa0073650 MtrunA17_Chr5g0447761 29.630 189 118 5 85 272 7 181 1.24e-16 79.3
Msa0073650 MtrunA17_Chr4g0044541 29.897 194 111 3 86 279 36 204 2.46e-16 79.0
Msa0073650 MtrunA17_Chr4g0044541 27.320 194 119 4 86 279 124 295 3.23e-16 78.6
Msa0073650 MtrunA17_Chr4g0044541 27.041 196 129 4 86 279 215 398 2.36e-12 67.0
Msa0073650 MtrunA17_Chr3g0135111 31.122 196 127 4 81 275 7 195 2.86e-16 77.8
Msa0073650 MtrunA17_Chr4g0045221 29.082 196 122 3 86 280 118 297 2.98e-16 78.2
Msa0073650 MtrunA17_Chr4g0045221 27.094 203 134 5 86 280 216 412 4.30e-12 65.9
Msa0073650 MtrunA17_Chr2g0278661 46.341 82 43 1 192 272 2 83 3.11e-16 76.3
Msa0073650 MtrunA17_Chr2g0278661 39.744 78 47 0 85 162 8 85 1.66e-12 65.9
Msa0073650 MtrunA17_Chr3g0101061 28.571 189 120 5 85 272 41 215 7.59e-16 77.4
Msa0073650 MtrunA17_Chr3g0120721 24.873 197 116 4 85 278 19 186 1.06e-15 76.3
Msa0073650 MtrunA17_Chr1g0153181 28.804 184 106 4 86 269 34 192 1.98e-15 76.3
Msa0073650 MtrunA17_Chr1g0153181 25.000 196 121 4 86 279 122 293 2.01e-12 67.0
Msa0073650 MtrunA17_Chr7g0265341 25.773 194 122 4 86 279 160 331 2.23e-15 75.9
Msa0073650 MtrunA17_Chr7g0265341 26.606 218 142 6 63 278 232 433 2.69e-14 72.8
Msa0073650 MtrunA17_Chr4g0070231 29.101 189 103 3 86 272 48 207 2.71e-15 75.1
Msa0073650 MtrunA17_Chr4g0070231 30.256 195 123 3 85 270 132 322 6.16e-14 71.2
Msa0073650 MtrunA17_Chr5g0411091 28.283 198 120 4 83 277 95 273 3.01e-15 74.7
Msa0073650 MtrunA17_Chr0c09g0493511 29.231 195 111 5 86 279 33 201 5.44e-15 74.7
Msa0073650 MtrunA17_Chr0c09g0493511 28.061 196 128 6 86 279 120 304 3.93e-13 69.3
Msa0073650 MtrunA17_Chr1g0210241 40.000 85 51 0 191 275 2 86 6.21e-15 73.2
Msa0073650 MtrunA17_Chr6g0465691 29.231 195 111 5 86 279 33 201 1.34e-14 73.6
Msa0073650 MtrunA17_Chr6g0465751 29.231 195 111 5 86 279 115 283 1.35e-14 73.6
Msa0073650 MtrunA17_Chr6g0465751 28.571 196 127 6 86 279 202 386 3.23e-12 66.6
Msa0073650 MtrunA17_Chr4g0050781 43.902 82 46 0 191 272 2 83 1.47e-14 70.9
Msa0073650 MtrunA17_Chr4g0050781 41.026 78 46 0 85 162 8 85 7.49e-13 66.2
Msa0073650 MtrunA17_Chr6g0466501 29.231 195 111 5 86 279 115 283 1.81e-14 73.2
Msa0073650 MtrunA17_Chr1g0186351 29.146 199 123 6 85 276 7 194 1.89e-14 73.2
Msa0073650 MtrunA17_Chr7g0266751 43.902 82 46 0 197 278 33 114 1.92e-14 68.9
Msa0073650 MtrunA17_Chr7g0266751 34.951 103 57 1 85 187 33 125 1.92e-12 63.5
Msa0073650 MtrunA17_Chr1g0201151 29.412 187 107 3 83 269 29 190 3.40e-14 72.4
Msa0073650 MtrunA17_Chr6g0466451 29.231 195 114 5 86 279 17 188 4.26e-14 72.0
Msa0073650 MtrunA17_Chr6g0466451 26.154 195 133 5 86 279 107 291 5.45e-13 68.6
Msa0073650 MtrunA17_Chr6g0465631 29.231 195 114 5 86 279 17 188 4.38e-14 72.0
Msa0073650 MtrunA17_Chr6g0465631 26.154 195 133 5 86 279 107 291 5.82e-13 68.6
Msa0073650 MtrunA17_Chr7g0219031 43.284 67 38 0 192 258 36 102 5.73e-14 67.0
Msa0073650 MtrunA17_Chr3g0132451 26.271 236 146 7 41 272 48 259 6.11e-14 70.5
Msa0073650 MtrunA17_Chr1g0179701 26.396 197 117 5 86 279 152 323 1.50e-13 70.5
Msa0073650 MtrunA17_Chr1g0179701 28.061 196 123 5 86 279 243 422 3.19e-12 66.6
Msa0073650 MtrunA17_Chr8g0383661 28.947 190 121 7 83 270 200 377 1.64e-13 70.5
Msa0073650 MtrunA17_Chr8g0383661 40.964 83 47 2 78 159 297 378 6.17e-11 62.8
Msa0073650 MtrunA17_Chr3g0139111 27.807 187 108 3 86 272 62 221 3.05e-13 69.3
Msa0073650 MtrunA17_Chr3g0139111 26.154 195 130 2 86 270 147 337 5.57e-13 68.6
Msa0073650 MtrunA17_Chr8g0344491 28.270 237 142 6 47 270 118 339 6.66e-13 68.2
Msa0073650 MtrunA17_Chr8g0344491 26.866 201 118 3 74 272 50 223 2.56e-12 66.6
Msa0073650 MtrunA17_Chr3g0088511 32.967 91 61 0 85 175 33 123 1.91e-12 63.2
Msa0073650 MtrunA17_Chr6g0449481 22.335 197 121 4 85 278 46 213 2.32e-12 66.6
Msa0073650 MtrunA17_Chr8g0375101 28.261 184 103 5 83 262 3 161 5.25e-12 65.5
Msa0073650 MtrunA17_Chr4g0058141 36.975 119 58 3 127 244 2 104 5.60e-12 61.2
Msa0073650 MtrunA17_Chr1g0201001 31.452 124 68 3 81 201 26 135 7.01e-12 65.5
Msa0073650 MtrunA17_Chr3g0134141 28.230 209 136 4 73 279 192 388 1.16e-11 64.7
Msa0073650 MtrunA17_Chr3g0134141 26.904 197 118 4 86 280 114 286 1.68e-11 64.3
Msa0073650 MtrunA17_Chr4g0031091 34.615 78 51 0 80 157 29 106 1.28e-11 60.5
Msa0073650 MtrunA17_Chr4g0031091 33.333 81 54 0 193 273 30 110 7.67e-11 58.2
Msa0073650 MtrunA17_Chr5g0402191 27.749 191 110 5 83 272 3 166 1.60e-11 63.9
Msa0073650 MtrunA17_Chr1g0163591 26.263 198 116 7 81 254 159 350 1.62e-11 64.3
Msa0073650 MtrunA17_Chr2g0327921 39.744 78 47 0 85 162 8 85 2.08e-11 59.3
Msa0073650 MtrunA17_Chr3g0129451 40.964 83 47 2 78 159 337 418 3.15e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073650 AT2G37220.1 63.136 236 80 3 49 279 54 287 9.55e-93 276
Msa0073650 AT2G37220.1 45.238 84 46 0 85 168 205 288 5.92e-17 79.3
Msa0073650 AT4G24770.1 49.083 218 93 1 62 279 128 327 1.32e-59 192
Msa0073650 AT4G24770.2 49.083 218 93 1 62 279 128 327 1.32e-59 192
Msa0073650 AT5G50250.1 41.924 291 136 5 2 278 18 289 2.93e-59 191
Msa0073650 AT3G52380.1 45.078 193 97 3 85 277 117 300 6.10e-48 162
Msa0073650 AT1G60000.1 35.971 278 149 6 4 275 2 256 2.73e-45 154
Msa0073650 AT3G53460.1 58.101 179 56 6 16 177 14 190 9.27e-45 154
Msa0073650 AT3G53460.1 68.675 83 26 0 196 278 257 339 2.36e-33 124
Msa0073650 AT3G53460.1 48.810 84 43 0 85 168 258 341 8.53e-19 85.1
Msa0073650 AT3G53460.1 45.882 85 46 0 195 279 98 182 6.15e-13 68.6
Msa0073650 AT3G53460.3 58.101 179 56 6 16 177 14 190 9.27e-45 154
Msa0073650 AT3G53460.3 68.675 83 26 0 196 278 257 339 2.36e-33 124
Msa0073650 AT3G53460.3 48.810 84 43 0 85 168 258 341 8.53e-19 85.1
Msa0073650 AT3G53460.3 45.882 85 46 0 195 279 98 182 6.15e-13 68.6
Msa0073650 AT3G53460.2 58.101 179 56 6 16 177 14 190 9.27e-45 154
Msa0073650 AT3G53460.2 68.675 83 26 0 196 278 257 339 2.36e-33 124
Msa0073650 AT3G53460.2 48.810 84 43 0 85 168 258 341 8.53e-19 85.1
Msa0073650 AT3G53460.2 45.882 85 46 0 195 279 98 182 6.15e-13 68.6
Msa0073650 AT3G53460.4 52.500 200 55 7 16 177 14 211 6.13e-41 145
Msa0073650 AT3G53460.4 68.675 83 26 0 196 278 278 360 3.61e-33 124
Msa0073650 AT3G53460.4 48.810 84 43 0 85 168 279 362 9.90e-19 85.5
Msa0073650 AT3G52150.2 41.026 195 104 2 78 272 70 253 4.24e-40 140
Msa0073650 AT3G52150.1 41.026 195 104 2 78 272 70 253 4.24e-40 140
Msa0073650 AT2G35410.1 30.712 267 157 6 11 269 22 268 3.80e-29 112
Msa0073650 AT1G01080.1 35.263 190 102 3 86 269 110 284 1.63e-25 102
Msa0073650 AT1G01080.2 35.079 191 102 4 86 269 110 285 1.08e-24 100
Msa0073650 AT1G01080.3 35.503 169 101 2 86 254 110 270 4.94e-24 98.6
Msa0073650 AT3G23830.2 53.750 80 37 0 196 275 35 114 6.02e-23 92.0
Msa0073650 AT3G23830.2 40.000 85 49 1 85 167 36 120 3.17e-13 65.9
Msa0073650 AT3G23830.1 53.750 80 37 0 196 275 35 114 6.02e-23 92.0
Msa0073650 AT3G23830.1 40.000 85 49 1 85 167 36 120 3.17e-13 65.9
Msa0073650 AT4G13850.4 51.250 80 39 0 197 276 36 115 2.36e-22 90.1
Msa0073650 AT4G13850.4 40.000 80 48 0 85 164 36 115 3.37e-13 65.5
Msa0073650 AT4G13850.3 51.250 80 39 0 197 276 36 115 3.26e-22 90.5
Msa0073650 AT4G13850.3 40.000 85 49 1 85 167 36 120 2.13e-13 66.6
Msa0073650 AT4G13850.2 51.250 80 39 0 197 276 36 115 4.11e-22 90.5
Msa0073650 AT4G13850.2 40.000 85 49 1 85 167 36 120 2.59e-13 66.6
Msa0073650 AT4G13850.1 51.250 80 39 0 197 276 36 115 4.67e-22 90.5
Msa0073650 AT4G13850.1 40.000 85 49 1 85 167 36 120 2.87e-13 66.6
Msa0073650 AT2G21660.2 50.000 82 41 0 191 272 3 84 7.27e-21 87.0
Msa0073650 AT2G21660.2 41.892 74 43 0 85 158 9 82 3.20e-11 60.8
Msa0073650 AT2G21660.1 50.000 82 41 0 191 272 3 84 1.09e-20 87.0
Msa0073650 AT2G21660.1 41.892 74 43 0 85 158 9 82 4.36e-11 60.8
Msa0073650 AT3G16380.1 29.210 291 169 9 1 278 119 385 1.84e-19 88.2
Msa0073650 AT3G16380.1 30.412 194 112 5 86 279 114 284 1.86e-14 73.6
Msa0073650 AT4G14300.1 32.653 196 118 6 85 276 7 192 6.09e-19 86.3
Msa0073650 AT4G14300.2 32.653 196 118 6 85 276 7 192 6.09e-19 86.3
Msa0073650 AT5G61030.2 45.783 83 45 0 194 276 38 120 6.84e-19 85.1
Msa0073650 AT5G61030.2 44.595 74 41 0 85 158 41 114 2.17e-12 66.6
Msa0073650 AT5G61030.1 45.783 83 45 0 194 276 38 120 6.84e-19 85.1
Msa0073650 AT5G61030.1 44.595 74 41 0 85 158 41 114 2.17e-12 66.6
Msa0073650 AT4G39260.3 46.429 84 45 0 192 275 2 85 1.34e-18 79.0
Msa0073650 AT4G39260.3 39.189 74 45 0 85 158 7 80 4.58e-11 58.5
Msa0073650 AT5G40490.1 26.941 219 123 5 68 278 21 210 1.37e-18 85.5
Msa0073650 AT5G40490.1 34.653 101 63 1 83 183 129 226 9.39e-11 62.4
Msa0073650 AT5G19350.2 32.474 194 108 5 86 278 26 197 1.63e-18 85.1
Msa0073650 AT5G19350.2 25.000 196 132 4 82 270 114 301 2.47e-12 67.0
Msa0073650 AT5G19350.1 32.474 194 108 5 86 278 26 197 1.65e-18 85.1
Msa0073650 AT4G34110.1 28.866 194 116 4 86 279 126 297 3.10e-18 84.7
Msa0073650 AT4G34110.1 29.592 196 113 3 83 278 35 205 2.68e-17 82.0
Msa0073650 AT4G34110.1 26.087 207 139 4 75 279 206 400 8.31e-12 65.9
Msa0073650 AT1G34140.1 30.256 195 127 4 86 280 121 306 5.67e-18 83.6
Msa0073650 AT5G54900.1 30.583 206 114 7 82 279 152 336 6.75e-18 83.2
Msa0073650 AT5G54900.1 28.866 194 113 4 86 275 62 234 8.56e-17 80.1
Msa0073650 AT1G74230.1 48.101 79 40 1 194 272 32 109 1.61e-17 80.9
Msa0073650 AT1G74230.1 44.595 74 40 1 85 158 35 107 1.95e-11 63.5
Msa0073650 AT4G39260.2 45.679 81 44 0 192 272 2 82 2.39e-17 76.6
Msa0073650 AT2G33410.1 32.143 196 119 6 85 276 7 192 3.02e-17 81.3
Msa0073650 AT5G55550.2 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
Msa0073650 AT5G55550.3 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
Msa0073650 AT5G55550.6 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
Msa0073650 AT5G55550.11 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
Msa0073650 AT4G26650.2 26.804 194 124 5 85 272 13 194 4.81e-17 80.9
Msa0073650 AT4G26650.1 26.804 194 124 5 85 272 16 197 4.95e-17 80.9
Msa0073650 AT1G49600.3 32.524 206 112 5 74 278 115 294 5.73e-17 80.9
Msa0073650 AT1G49600.3 29.557 203 128 6 82 279 211 403 5.27e-12 66.2
Msa0073650 AT1G49600.2 32.524 206 112 5 74 278 115 294 5.73e-17 80.9
Msa0073650 AT1G49600.2 29.557 203 128 6 82 279 211 403 5.27e-12 66.2
Msa0073650 AT5G55550.5 27.128 188 128 4 85 272 7 185 5.75e-17 80.9
Msa0073650 AT5G55550.4 27.128 188 128 4 85 272 7 185 5.75e-17 80.9
Msa0073650 AT5G55550.9 27.128 188 128 4 85 272 7 185 5.75e-17 80.9
Msa0073650 AT5G55550.7 27.128 188 128 4 85 272 7 185 5.75e-17 80.9
Msa0073650 AT5G55550.1 27.128 188 128 4 85 272 7 185 5.75e-17 80.9
Msa0073650 AT4G39260.1 45.679 81 44 0 192 272 2 82 6.63e-17 76.6
Msa0073650 AT2G23350.1 29.897 194 111 3 86 279 48 216 6.91e-17 80.9
Msa0073650 AT2G23350.1 28.205 195 118 4 86 280 136 308 1.58e-15 77.0
Msa0073650 AT2G23350.1 30.000 200 118 5 86 279 227 410 5.32e-13 69.3
Msa0073650 AT1G47500.2 31.122 196 114 4 83 275 102 279 1.07e-16 79.0
Msa0073650 AT1G11650.1 29.843 191 114 3 86 275 64 235 1.10e-16 79.0
Msa0073650 AT3G19130.1 32.039 206 113 5 74 278 104 283 1.46e-16 79.7
Msa0073650 AT3G19130.1 27.184 206 136 5 82 280 200 398 4.80e-11 63.2
Msa0073650 AT1G49600.1 32.524 206 112 5 74 278 115 294 1.72e-16 79.3
Msa0073650 AT1G49600.1 29.412 204 129 6 82 280 211 404 2.89e-12 67.0
Msa0073650 AT1G54080.1 32.178 202 109 5 86 270 150 340 2.22e-16 79.0
Msa0073650 AT1G54080.1 27.228 202 116 4 74 272 51 224 4.92e-13 68.9
Msa0073650 AT1G11650.2 30.890 191 112 4 86 275 64 235 2.91e-16 78.6
Msa0073650 AT1G11650.2 28.774 212 127 6 72 279 147 338 5.87e-16 77.8
Msa0073650 AT1G17640.2 28.358 201 107 5 85 278 67 237 3.62e-16 78.2
Msa0073650 AT1G17640.1 28.358 201 107 5 85 278 67 237 3.62e-16 78.2
Msa0073650 AT1G17640.3 28.358 201 107 5 85 278 67 237 3.62e-16 78.2
Msa0073650 AT1G47500.1 31.122 196 114 4 83 275 102 279 4.09e-16 78.2
Msa0073650 AT1G47500.1 28.293 205 128 5 82 280 197 388 2.65e-14 72.8
Msa0073650 AT1G47490.2 30.102 196 116 4 83 275 100 277 6.71e-16 76.6
Msa0073650 AT5G40490.2 26.064 188 107 4 94 278 35 193 8.86e-16 77.0
Msa0073650 AT5G40490.2 34.653 101 63 1 83 183 112 209 6.00e-11 62.8
Msa0073650 AT1G71770.1 28.856 201 117 4 86 280 148 328 9.64e-16 77.4
Msa0073650 AT1G71770.1 28.922 204 130 6 77 279 235 424 2.70e-14 73.2
Msa0073650 AT1G71770.1 28.723 188 108 4 82 269 57 218 5.28e-13 69.3
Msa0073650 AT1G71770.2 28.856 201 117 4 86 280 148 328 9.64e-16 77.4
Msa0073650 AT1G71770.2 28.922 204 130 6 77 279 235 424 2.70e-14 73.2
Msa0073650 AT1G71770.2 28.723 188 108 4 82 269 57 218 5.28e-13 69.3
Msa0073650 AT5G06210.1 42.500 80 46 0 196 275 34 113 1.37e-15 72.8
Msa0073650 AT5G06210.1 37.838 74 46 0 85 158 35 108 8.10e-12 62.4
Msa0073650 AT3G26420.1 43.902 82 46 0 191 272 2 83 1.49e-15 74.7
Msa0073650 AT3G26420.1 35.714 84 54 0 79 162 2 85 4.01e-12 65.1
Msa0073650 AT1G47490.1 30.102 196 116 4 83 275 100 277 2.44e-15 75.9
Msa0073650 AT1G47490.1 27.451 204 131 6 82 280 195 386 5.52e-13 68.9
Msa0073650 AT1G18630.1 42.529 87 50 0 188 274 28 114 2.65e-15 72.0
Msa0073650 AT1G22760.1 30.457 197 111 6 86 279 138 311 3.78e-15 75.9
Msa0073650 AT1G22760.1 26.906 223 150 6 57 279 205 414 2.29e-13 70.5
Msa0073650 AT1G22760.1 27.411 197 117 4 82 278 47 217 2.20e-12 67.4
Msa0073650 AT5G47620.1 27.660 188 123 6 85 272 7 181 6.96e-15 74.7
Msa0073650 AT5G47620.2 27.660 188 123 6 85 272 7 181 6.96e-15 74.7
Msa0073650 AT5G47620.5 27.660 188 123 6 85 272 7 181 6.96e-15 74.7
Msa0073650 AT1G54080.2 31.553 206 109 6 86 270 150 344 1.30e-14 73.9
Msa0073650 AT1G54080.2 26.699 206 116 5 74 272 51 228 2.43e-11 63.9
Msa0073650 AT5G09880.1 28.218 202 126 6 73 270 154 340 1.56e-14 73.9
Msa0073650 AT3G07810.2 29.293 198 117 6 81 272 3 183 1.71e-14 73.6
Msa0073650 AT3G07810.1 29.293 198 117 6 81 272 3 183 2.13e-14 73.2
Msa0073650 AT4G27000.1 29.016 193 113 4 86 275 82 253 2.50e-14 72.8
Msa0073650 AT4G27000.1 27.228 202 126 4 82 279 171 355 3.04e-13 69.7
Msa0073650 AT3G13224.1 28.061 196 112 6 69 261 8 177 2.52e-14 71.2
Msa0073650 AT3G13224.2 27.273 209 123 6 69 274 8 190 3.08e-14 72.4
Msa0073650 AT3G13224.3 26.289 194 118 4 84 274 10 181 3.71e-14 72.0
Msa0073650 AT3G08000.1 41.975 81 47 0 197 277 42 122 3.77e-14 68.6
Msa0073650 AT3G08000.1 38.298 94 51 1 85 171 42 135 3.35e-12 63.2
Msa0073650 AT1G49760.1 26.804 194 120 4 86 279 135 306 4.59e-14 72.4
Msa0073650 AT1G49760.1 28.571 196 126 4 86 279 226 409 2.52e-12 67.4
Msa0073650 AT1G49760.2 26.804 194 120 4 86 279 135 306 4.59e-14 72.4
Msa0073650 AT1G49760.2 28.571 196 126 4 86 279 226 409 2.52e-12 67.4
Msa0073650 AT4G36960.1 29.851 201 109 6 83 278 2 175 1.17e-13 70.9
Msa0073650 AT4G36960.2 29.851 201 109 6 83 278 2 175 1.17e-13 70.9
Msa0073650 AT4G13860.1 45.946 74 40 0 196 269 3 76 2.68e-13 64.7
Msa0073650 AT4G13860.1 44.595 74 41 0 85 158 4 77 3.89e-11 58.9
Msa0073650 AT5G47620.4 26.087 207 124 6 85 272 7 203 2.97e-13 69.7
Msa0073650 AT1G17370.2 28.511 235 141 7 47 270 110 328 5.13e-13 68.9
Msa0073650 AT1G17370.2 26.866 201 118 3 74 272 42 215 1.52e-12 67.8
Msa0073650 AT3G14100.1 28.319 226 125 5 47 255 115 320 7.02e-13 68.6
Msa0073650 AT3G14100.1 28.218 202 114 4 74 272 47 220 8.07e-13 68.6
Msa0073650 AT1G17370.1 27.848 237 143 6 47 270 110 331 1.09e-12 68.2
Msa0073650 AT1G17370.1 26.866 201 118 3 74 272 42 215 1.46e-12 67.8
Msa0073650 AT4G09040.2 27.041 196 125 4 85 279 35 213 1.24e-12 66.6
Msa0073650 AT4G09040.1 26.020 196 127 3 85 279 95 273 1.50e-12 67.0
Msa0073650 AT4G39260.4 44.776 67 37 0 192 258 2 68 1.80e-12 63.2
Msa0073650 AT1G60650.2 36.709 79 50 0 195 273 11 89 2.86e-12 66.2
Msa0073650 AT1G60650.1 36.709 79 50 0 195 273 11 89 2.86e-12 66.2
Msa0073650 AT5G47320.1 41.250 80 47 0 197 276 32 111 4.12e-12 64.7
Msa0073650 AT1G48920.1 28.646 192 122 7 77 264 290 470 5.40e-12 66.2
Msa0073650 AT2G36660.1 27.717 184 108 4 86 269 26 184 1.08e-11 65.5
Msa0073650 AT5G59865.1 40.000 85 49 1 194 278 24 106 4.15e-11 59.3
Msa0073650 AT3G46020.1 39.474 76 46 0 197 272 8 83 4.23e-11 58.9
Msa0073650 AT4G16280.3 27.957 186 112 5 74 259 110 273 6.89e-11 62.8

Find 118 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGGAGTGTGATATTTA+TGG 0.138471 1_2:-47499039 None:intergenic
AAGGAAAAGGGTTTGAAATT+AGG 0.163448 1_2:-47499243 None:intergenic
GTAGACATGGTTTAAGAAAA+TGG 0.279688 1_2:-47499135 None:intergenic
CATGCTTACCGCGCCATCTA+AGG 0.295165 1_2:-47500619 None:intergenic
AGGAAAAGGGTTTGAAATTA+GGG 0.296680 1_2:-47499242 None:intergenic
TCTATAGAATAAAGCTTGTT+AGG 0.297227 1_2:-47501220 None:intergenic
ATATTGTGACTTGAGGATTT+TGG 0.307099 1_2:+47501480 Msa0073650:three_prime_UTR
ACTGGAAGAAGCAGGGGATT+TGG 0.326987 1_2:+47499726 Msa0073650:CDS
AGTGGAAGATCTAGAGGATT+TGG 0.327784 1_2:+47500549 Msa0073650:CDS
GAAGAGAGTGAGTGAGGGTT+TGG 0.333949 1_2:-47499068 None:intergenic
AGTGAGTGAGGGTTTGGAAA+AGG 0.337971 1_2:-47499062 None:intergenic
TTCGGTGAGAATCCTCGTTT+TGG 0.361312 1_2:+47500366 Msa0073650:CDS
TTCATGTTGGTAACCTTGCT+TGG 0.366467 1_2:+47500445 Msa0073650:CDS
TCATGTTGGTAACCTTGCTT+GGG 0.376247 1_2:+47500446 Msa0073650:CDS
GTGAGTGAGGGTTTGGAAAA+GGG 0.379076 1_2:-47499061 None:intergenic
ACGAGGATTCTCACCGAAAC+GGG 0.385348 1_2:-47500361 None:intergenic
CATCAAAGGTATCTTCTTCC+TGG 0.389538 1_2:-47499344 None:intergenic
TCTTATTGTTAGCAGGTAGT+TGG 0.394066 1_2:+47501104 Msa0073650:intron
AATCCTCAAAATTGACGCTT+TGG 0.396059 1_2:-47500946 None:intergenic
AGAAACAGAGGAAAAGGAAA+AGG 0.398906 1_2:-47499256 None:intergenic
TGCTTGGGGTGTTGACAACT+TGG 0.399190 1_2:+47500461 Msa0073650:CDS
TTTACTAATGCGAATGTGCC+TGG 0.406099 1_2:+47501407 Msa0073650:three_prime_UTR
GAGAAGAAGAAGAGAAAGTA+GGG 0.406202 1_2:-47499100 None:intergenic
AGTGCTATTCGAACCTTAGA+TGG 0.414306 1_2:+47500606 Msa0073650:CDS
TTATTGTTTACTTGTTATGT+TGG 0.429791 1_2:+47501454 Msa0073650:three_prime_UTR
CTTATTGTTAGCAGGTAGTT+GGG 0.430904 1_2:+47501105 Msa0073650:intron
TGGTGAACAAGGACAAGTTT+TGG 0.432362 1_2:+47500500 Msa0073650:CDS
ACCAATAAAGCGGTAAAATA+CGG 0.433398 1_2:-47501319 None:intergenic
AGAGAAGAAGAAGAGAAAGT+AGG 0.436535 1_2:-47499101 None:intergenic
GAAAGAATGCACTTCATACT+TGG 0.437055 1_2:+47501170 Msa0073650:three_prime_UTR
ATTGAAGAAGAGAGTGAGTG+AGG 0.441345 1_2:-47499074 None:intergenic
GGGTTTGAAATTAGGGTTGA+GGG 0.444181 1_2:-47499235 None:intergenic
CGCTTTGGTCTACTATCGGC+TGG 0.447563 1_2:-47500931 None:intergenic
TGCATTCTTTCACAAACAGT+TGG 0.447829 1_2:-47501158 None:intergenic
GTGATTTATGATAAGACTAC+TGG 0.448929 1_2:+47499708 Msa0073650:CDS
TTGGCACTTGAGTCATTGTT+TGG 0.449309 1_2:+47500480 Msa0073650:CDS
GAGGGTTTGGAAAAGGGTTG+AGG 0.450710 1_2:-47499055 None:intergenic
CCAACAAACAACCTCTGGTT+AGG 0.451368 1_2:-47499393 None:intergenic
GAAACAGAGGAAAAGGAAAA+GGG 0.452226 1_2:-47499255 None:intergenic
ACGAAGAGAAACAGAGGAAA+AGG 0.456325 1_2:-47499262 None:intergenic
CCTAACCAGAGGTTGTTTGT+TGG 0.469968 1_2:+47499393 Msa0073650:CDS
TGAAAGGGTGGATGATGATA+AGG 0.470437 1_2:-47498993 None:intergenic
TTGAAGAAGAGAGTGAGTGA+GGG 0.474022 1_2:-47499073 None:intergenic
TAAACAATAAAATAAGTTTG+TGG 0.479263 1_2:-47501441 None:intergenic
CGTAGTGAGAATTCCCGTTT+CGG 0.479631 1_2:+47500348 Msa0073650:CDS
CTATCTGAAGAACCACCTCT+TGG 0.481583 1_2:-47500411 None:intergenic
GGAGTGAAGAGAAACATTGA+GGG 0.482925 1_2:-47499203 None:intergenic
CTCTGGTTAGGAGAGTAACT+AGG 0.488332 1_2:-47499381 None:intergenic
AACGAGGATTCTCACCGAAA+CGG 0.490069 1_2:-47500362 None:intergenic
ATAAGACTACTGGAAGAAGC+AGG 0.490077 1_2:+47499718 Msa0073650:CDS
GGGAGTGAAGAGAAACATTG+AGG 0.496008 1_2:-47499204 None:intergenic
GTACCGAGTCCTCTCTTGAT+CGG 0.497488 1_2:-47500986 None:intergenic
TACCGAGTCCTCTCTTGATC+GGG 0.500874 1_2:-47500985 None:intergenic
TAGGGTTGAGGGAAAGAGAA+GGG 0.515631 1_2:-47499224 None:intergenic
AAACGCTGGGAATGTTGAAA+TGG 0.516801 1_2:+47499464 Msa0073650:CDS
AAGCAAAGGTAATCTATGAC+AGG 0.517595 1_2:+47500523 Msa0073650:CDS
GTAATCTATGACAGGGAAAG+TGG 0.519710 1_2:+47500531 Msa0073650:CDS
TTAGGGTTGAGGGAAAGAGA+AGG 0.521062 1_2:-47499225 None:intergenic
TTCTCACTACGAGGAGGAGG+TGG 0.525252 1_2:-47500336 None:intergenic
GTGTGATATTTATGGAAGTG+AGG 0.526453 1_2:-47499031 None:intergenic
GAAGAAGATACCTTTGATGA+TGG 0.530298 1_2:+47499348 Msa0073650:CDS
GCAGGTAGTTGGGAGTTATG+TGG 0.532548 1_2:+47501115 Msa0073650:intron
TTGACGCTTTGGTCTACTAT+CGG 0.534269 1_2:-47500935 None:intergenic
TCTGAAGAACCACCTCTTGG+AGG 0.535648 1_2:-47500408 None:intergenic
TACTATCGGCTGGTGAGACT+CGG 0.538240 1_2:-47500921 None:intergenic
GGTTACCAACAAACAACCTC+TGG 0.538562 1_2:-47499398 None:intergenic
GCGGCTGCTCAGCAGTTGAA+TGG 0.542103 1_2:+47499783 Msa0073650:CDS
TGTGATATTTATGGAAGTGA+GGG 0.546239 1_2:-47499030 None:intergenic
GGAAATTTACAGGTGGTGGA+TGG 0.547630 1_2:+47500285 Msa0073650:intron
TCTGGTTAGGAGAGTAACTA+GGG 0.549336 1_2:-47499380 None:intergenic
TCACTACGAGGAGGAGGTGG+TGG 0.549386 1_2:-47500333 None:intergenic
CGATGGGAAATAGACAAAGA+TGG 0.554421 1_2:-47499285 None:intergenic
ATTTATGGAAGTGAGGGGAA+CGG 0.557306 1_2:-47499024 None:intergenic
CACTGTCAACACTGAAAGGA+AGG 0.558406 1_2:-47499419 None:intergenic
GAAGAGTGATGGAAGTACTA+AGG 0.558474 1_2:-47499169 None:intergenic
CTTGATCGGGTATAGATGAA+AGG 0.560787 1_2:-47500972 None:intergenic
TGTTTCTTCTGAATTTGACC+AGG 0.566886 1_2:+47499326 Msa0073650:CDS
AGGGTTTGAAATTAGGGTTG+AGG 0.569323 1_2:-47499236 None:intergenic
GAGTCATTGTTTGGTGAACA+AGG 0.574217 1_2:+47500489 Msa0073650:CDS
GACTTTCAGTAGCGCTGATG+AGG 0.578722 1_2:+47500578 Msa0073650:CDS
AGAGAATTGAGAGTGAATGC+TGG 0.579689 1_2:+47500309 Msa0073650:CDS
TTTGGTGGTGATCGTTCTAG+AGG 0.580010 1_2:+47500384 Msa0073650:CDS
TTGGAAAATATTGTGACTTG+AGG 0.580809 1_2:+47501473 Msa0073650:three_prime_UTR
TGAGCACTGTCAACACTGAA+AGG 0.583654 1_2:-47499423 None:intergenic
GGGAACGGTTGCAAAATGAA+AGG 0.587333 1_2:-47499009 None:intergenic
AGGGAAAGTGGAAGATCTAG+AGG 0.591000 1_2:+47500543 Msa0073650:CDS
GGTATCATCACCATCATCAA+AGG 0.592983 1_2:-47499358 None:intergenic
TGTTACTATGTCTTCTGCTG+CGG 0.604372 1_2:+47499752 Msa0073650:CDS
TACCCGATCAAGAGAGGACT+CGG 0.606814 1_2:+47500983 Msa0073650:three_prime_UTR
TAAGACTACTGGAAGAAGCA+GGG 0.613089 1_2:+47499719 Msa0073650:CDS
CAACACGAGAAATGAAACGA+TGG 0.613411 1_2:-47499302 None:intergenic
GGAACGGTTGCAAAATGAAA+GGG 0.613946 1_2:-47499008 None:intergenic
AACACGAGAAATGAAACGAT+GGG 0.615472 1_2:-47499301 None:intergenic
CATCTATACCCGATCAAGAG+AGG 0.617213 1_2:+47500977 Msa0073650:three_prime_UTR
GAATTCTCACTACGAGGAGG+AGG 0.621502 1_2:-47500339 None:intergenic
TGGGAATGTTGAAATGGTTG+AGG 0.621531 1_2:+47499470 Msa0073650:CDS
TTCTGCTGCGGAAGTTGAAG+CGG 0.622597 1_2:+47499764 Msa0073650:CDS
GGATGTTGCAGAGGTAGACA+TGG 0.627985 1_2:-47499148 None:intergenic
AGTTGTCAACACCCCAAGCA+AGG 0.628607 1_2:-47500458 None:intergenic
AATCTACTCTACCAATAAAG+CGG 0.629633 1_2:-47501329 None:intergenic
GTGATATTTATGGAAGTGAG+GGG 0.631868 1_2:-47499029 None:intergenic
CATGTTGGTAACCTTGCTTG+GGG 0.635880 1_2:+47500447 Msa0073650:CDS
AGCAAAGGTAATCTATGACA+GGG 0.637693 1_2:+47500524 Msa0073650:CDS
AAGACTACTGGAAGAAGCAG+GGG 0.638733 1_2:+47499720 Msa0073650:CDS
AAGTACTAAGGATGTTGCAG+AGG 0.648638 1_2:-47499157 None:intergenic
TCTAGAGGTCCTCCAAGAGG+TGG 0.648673 1_2:+47500399 Msa0073650:CDS
AGATGGACGAAGAGAAACAG+AGG 0.649696 1_2:-47499268 None:intergenic
CAAGGTTACCAACATGAACA+CGG 0.652532 1_2:-47500440 None:intergenic
GAGTGAAGAGAAACATTGAG+GGG 0.655321 1_2:-47499202 None:intergenic
AGTGACAACCGTGTTCATGT+TGG 0.658546 1_2:+47500432 Msa0073650:CDS
ACGGTTGCAAAATGAAAGGG+TGG 0.671859 1_2:-47499005 None:intergenic
CGTTCTAGAGGTCCTCCAAG+AGG 0.680337 1_2:+47500396 Msa0073650:CDS
TATTCGAACCTTAGATGGCG+CGG 0.688538 1_2:+47500611 Msa0073650:CDS
CTAGTTACTCTCCTAACCAG+AGG 0.690578 1_2:+47499382 Msa0073650:CDS
GAACGATCACCACCAAAACG+AGG 0.713335 1_2:-47500378 None:intergenic
CGGGAATTCTCACTACGAGG+AGG 0.715546 1_2:-47500342 None:intergenic
CTGGTTAGGAGAGTAACTAG+GGG 0.742322 1_2:-47499379 None:intergenic
AAACGGGAATTCTCACTACG+AGG 0.753968 1_2:-47500345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTCATAATTAAAAAAATT+AGG - chr1_2:47500743-47500762 None:intergenic 10.0%
!!! CTAATTTTTTTAATTATGAA+AGG + chr1_2:47500741-47500760 Msa0073650:intron 10.0%
!! TGATAATTTATTATAAAGTC+TGG + chr1_2:47499540-47499559 Msa0073650:intron 15.0%
!!! CCAATAATTTTAATCAAAAA+GGG - chr1_2:47499588-47499607 None:intergenic 15.0%
!!! CCTTTTTGATTAAAATTATT+GGG + chr1_2:47499586-47499605 Msa0073650:intron 15.0%
!!! TTATTATTTTTCATCCAAAA+GGG - chr1_2:47499629-47499648 None:intergenic 15.0%
!!! ATTATTATTTTTCATCCAAA+AGG - chr1_2:47499630-47499649 None:intergenic 15.0%
!! TTTGGATGAAAAATAATAAT+AGG + chr1_2:47499630-47499649 Msa0073650:intron 15.0%
!! TTAATAAAATACCTATACAT+GGG - chr1_2:47500074-47500093 None:intergenic 15.0%
!! TTTAATAAAATACCTATACA+TGG - chr1_2:47500075-47500094 None:intergenic 15.0%
!!! ATAGGTATTTTATTAAAATG+TGG + chr1_2:47500078-47500097 Msa0073650:intron 15.0%
!!! ATTTTATTAAAATGTGGATA+AGG + chr1_2:47500084-47500103 Msa0073650:intron 15.0%
!!! TTTTATTAAAATGTGGATAA+GGG + chr1_2:47500085-47500104 Msa0073650:intron 15.0%
!! TAAACAATAAAATAAGTTTG+TGG - chr1_2:47501444-47501463 None:intergenic 15.0%
!!! TTATAAAGTCTGGTTTTTTA+TGG + chr1_2:47499550-47499569 Msa0073650:intron 20.0%
!!! CCCTTTTTGATTAAAATTAT+TGG + chr1_2:47499585-47499604 Msa0073650:intron 20.0%
!!! CCCAATAATTTTAATCAAAA+AGG - chr1_2:47499589-47499608 None:intergenic 20.0%
!! TGATTAAAATTATTGGGTTA+AGG + chr1_2:47499592-47499611 Msa0073650:intron 20.0%
!! GAAAAATAATAATAGGTTTG+TGG + chr1_2:47499637-47499656 Msa0073650:intron 20.0%
!! TTGAATAGTTACAAGTAATT+AGG + chr1_2:47500042-47500061 Msa0073650:intron 20.0%
!! TAATAAAATACCTATACATG+GGG - chr1_2:47500073-47500092 None:intergenic 20.0%
!! TTTATTAAAATGTGGATAAG+GGG + chr1_2:47500086-47500105 Msa0073650:intron 20.0%
!!! ATTATTTGCTATGTTATGAA+TGG + chr1_2:47500222-47500241 Msa0073650:intron 20.0%
!! CTTAGATGTTATAAACAAAA+TGG - chr1_2:47500254-47500273 None:intergenic 20.0%
!!! CATTTTGTTTATAACATCTA+AGG + chr1_2:47500252-47500271 Msa0073650:intron 20.0%
!! TAGAACATTGCATATTATAT+AGG - chr1_2:47501021-47501040 None:intergenic 20.0%
!!! TTATTGTTTACTTGTTATGT+TGG + chr1_2:47501454-47501473 Msa0073650:three_prime_UTR 20.0%
!! CCAATAATTTTCATCCAAAA+GGG - chr1_2:47499515-47499534 None:intergenic 25.0%
!! CCTTTTGGATGAAAATTATT+GGG + chr1_2:47499513-47499532 Msa0073650:intron 25.0%
!!! CTGGTTTTTTATGGTTTAAT+TGG + chr1_2:47499559-47499578 Msa0073650:intron 25.0%
! ATTATTGGGTTAAGGTTAAT+TGG + chr1_2:47499600-47499619 Msa0073650:intron 25.0%
! AGTTGTTTGAAAATTGAGTA+TGG + chr1_2:47499880-47499899 Msa0073650:intron 25.0%
! AATAAAATACCTATACATGG+GGG - chr1_2:47500072-47500091 None:intergenic 25.0%
! AAACATTCTTGGAAATTTAC+AGG + chr1_2:47500275-47500294 Msa0073650:intron 25.0%
! TAGATTATGAGTTAGAATTC+AGG + chr1_2:47500714-47500733 Msa0073650:intron 25.0%
! AGATTATGAGTTAGAATTCA+GGG + chr1_2:47500715-47500734 Msa0073650:intron 25.0%
! TATATTGTGTATTTAACCAC+TGG + chr1_2:47500849-47500868 Msa0073650:intron 25.0%
!!! TTTTTTTTGTAGGACTTGAA+TGG + chr1_2:47500889-47500908 Msa0073650:intron 25.0%
! ATTGCATATTATATAGGTGA+AGG - chr1_2:47501015-47501034 None:intergenic 25.0%
!!! TGTTTATTTTCCTCATGAAT+TGG + chr1_2:47501065-47501084 Msa0073650:intron 25.0%
!! TCTATAGAATAAAGCTTGTT+AGG - chr1_2:47501223-47501242 None:intergenic 25.0%
TGTGATATTTATGGAAGTGA+GGG - chr1_2:47499033-47499052 None:intergenic 30.0%
GTAGACATGGTTTAAGAAAA+TGG - chr1_2:47499138-47499157 None:intergenic 30.0%
! AGGAAAAGGGTTTGAAATTA+GGG - chr1_2:47499245-47499264 None:intergenic 30.0%
! AAGGAAAAGGGTTTGAAATT+AGG - chr1_2:47499246-47499265 None:intergenic 30.0%
! TCTTTACAAAGATACCCTTT+TGG + chr1_2:47499498-47499517 Msa0073650:intron 30.0%
! CCCTTTTGGATGAAAATTAT+TGG + chr1_2:47499512-47499531 Msa0073650:intron 30.0%
! CCCAATAATTTTCATCCAAA+AGG - chr1_2:47499516-47499535 None:intergenic 30.0%
AGGTTTGTGGTGAATTTAAT+TGG + chr1_2:47499650-47499669 Msa0073650:intron 30.0%
GGTTTGTGGTGAATTTAATT+GGG + chr1_2:47499651-47499670 Msa0073650:intron 30.0%
!!! GCTGAAATTTGTGTTTTTTC+AGG + chr1_2:47499686-47499705 Msa0073650:intron 30.0%
GTGATTTATGATAAGACTAC+TGG + chr1_2:47499708-47499727 Msa0073650:CDS 30.0%
GTAACTCTTATATCTGAGTT+TGG + chr1_2:47500161-47500180 Msa0073650:intron 30.0%
AACATCTAAGGAAACATTCT+TGG + chr1_2:47500264-47500283 Msa0073650:intron 30.0%
!!! CATCATCTGGTTTTTTTTGT+AGG + chr1_2:47500879-47500898 Msa0073650:intron 30.0%
CATATTATATAGGTGAAGGA+TGG - chr1_2:47501011-47501030 None:intergenic 30.0%
AATATGCAATGTTCTAATGC+AGG + chr1_2:47501025-47501044 Msa0073650:intron 30.0%
TCTAACATCTTATTGTTAGC+AGG + chr1_2:47501097-47501116 Msa0073650:intron 30.0%
ACCAATAAAGCGGTAAAATA+CGG - chr1_2:47501322-47501341 None:intergenic 30.0%
AATCTACTCTACCAATAAAG+CGG - chr1_2:47501332-47501351 None:intergenic 30.0%
! TCAATTTTGCAACGATATTG+TGG + chr1_2:47501378-47501397 Msa0073650:three_prime_UTR 30.0%
TTGGAAAATATTGTGACTTG+AGG + chr1_2:47501473-47501492 Msa0073650:three_prime_UTR 30.0%
! ATATTGTGACTTGAGGATTT+TGG + chr1_2:47501480-47501499 Msa0073650:three_prime_UTR 30.0%
GTGATATTTATGGAAGTGAG+GGG - chr1_2:47499032-47499051 None:intergenic 35.0%
GTGTGATATTTATGGAAGTG+AGG - chr1_2:47499034-47499053 None:intergenic 35.0%
! GTTGAGGAGTGTGATATTTA+TGG - chr1_2:47499042-47499061 None:intergenic 35.0%
GAGAAGAAGAAGAGAAAGTA+GGG - chr1_2:47499103-47499122 None:intergenic 35.0%
AGAGAAGAAGAAGAGAAAGT+AGG - chr1_2:47499104-47499123 None:intergenic 35.0%
GAAACAGAGGAAAAGGAAAA+GGG - chr1_2:47499258-47499277 None:intergenic 35.0%
AGAAACAGAGGAAAAGGAAA+AGG - chr1_2:47499259-47499278 None:intergenic 35.0%
AACACGAGAAATGAAACGAT+GGG - chr1_2:47499304-47499323 None:intergenic 35.0%
TGTTTCTTCTGAATTTGACC+AGG + chr1_2:47499326-47499345 Msa0073650:CDS 35.0%
GAAGAAGATACCTTTGATGA+TGG + chr1_2:47499348-47499367 Msa0073650:CDS 35.0%
!! CTGAGATTTTTGAAAACGCT+GGG + chr1_2:47499451-47499470 Msa0073650:CDS 35.0%
TGTGGTGAATTTAATTGGGT+TGG + chr1_2:47499655-47499674 Msa0073650:intron 35.0%
ACTATGGTAATACCTTATCC+AGG + chr1_2:47500112-47500131 Msa0073650:intron 35.0%
! GATAAGGTATTACCTGGATA+AGG - chr1_2:47500127-47500146 None:intergenic 35.0%
ACAATGAGTAGATCTGGATA+AGG - chr1_2:47500143-47500162 None:intergenic 35.0%
AGAGTTACAATGAGTAGATC+TGG - chr1_2:47500149-47500168 None:intergenic 35.0%
TGCTATGTTATGAATGGCTT+TGG + chr1_2:47500228-47500247 Msa0073650:intron 35.0%
CATTCTTGGAAATTTACAGG+TGG + chr1_2:47500278-47500297 Msa0073650:intron 35.0%
AAGCAAAGGTAATCTATGAC+AGG + chr1_2:47500523-47500542 Msa0073650:CDS 35.0%
AGCAAAGGTAATCTATGACA+GGG + chr1_2:47500524-47500543 Msa0073650:CDS 35.0%
GCATCATATTGAATAGAGGA+GGG - chr1_2:47500650-47500669 None:intergenic 35.0%
TGCATCATATTGAATAGAGG+AGG - chr1_2:47500651-47500670 None:intergenic 35.0%
TCCTCTATTCAATATGATGC+AGG + chr1_2:47500650-47500669 Msa0073650:intron 35.0%
ACCTGCATCATATTGAATAG+AGG - chr1_2:47500654-47500673 None:intergenic 35.0%
TCAACTCTTCATGTGTGAAT+TGG + chr1_2:47500813-47500832 Msa0073650:intron 35.0%
AATCCTCAAAATTGACGCTT+TGG - chr1_2:47500949-47500968 None:intergenic 35.0%
AACATTCAGTCCAATTCATG+AGG - chr1_2:47501078-47501097 None:intergenic 35.0%
TCTTATTGTTAGCAGGTAGT+TGG + chr1_2:47501104-47501123 Msa0073650:intron 35.0%
CTTATTGTTAGCAGGTAGTT+GGG + chr1_2:47501105-47501124 Msa0073650:intron 35.0%
TGCATTCTTTCACAAACAGT+TGG - chr1_2:47501161-47501180 None:intergenic 35.0%
GAAAGAATGCACTTCATACT+TGG + chr1_2:47501170-47501189 Msa0073650:three_prime_UTR 35.0%
! TCCGTATTTTACCGCTTTAT+TGG + chr1_2:47501318-47501337 Msa0073650:three_prime_UTR 35.0%
!!! TTTGTGGTTGATAGTTTTCC+AGG - chr1_2:47501428-47501447 None:intergenic 35.0%
GGAACGGTTGCAAAATGAAA+GGG - chr1_2:47499011-47499030 None:intergenic 40.0%
ATTTATGGAAGTGAGGGGAA+CGG - chr1_2:47499027-47499046 None:intergenic 40.0%
TTGAAGAAGAGAGTGAGTGA+GGG - chr1_2:47499076-47499095 None:intergenic 40.0%
ATTGAAGAAGAGAGTGAGTG+AGG - chr1_2:47499077-47499096 None:intergenic 40.0%
AAGTACTAAGGATGTTGCAG+AGG - chr1_2:47499160-47499179 None:intergenic 40.0%
!! GAAGAGTGATGGAAGTACTA+AGG - chr1_2:47499172-47499191 None:intergenic 40.0%
!!! GAGTTTTTGGTGAAGAGTGA+TGG - chr1_2:47499183-47499202 None:intergenic 40.0%
! GAAACATTGAGGGGAGTTTT+TGG - chr1_2:47499196-47499215 None:intergenic 40.0%
GAGTGAAGAGAAACATTGAG+GGG - chr1_2:47499205-47499224 None:intergenic 40.0%
GGAGTGAAGAGAAACATTGA+GGG - chr1_2:47499206-47499225 None:intergenic 40.0%
! GGGTTTGAAATTAGGGTTGA+GGG - chr1_2:47499238-47499257 None:intergenic 40.0%
! AGGGTTTGAAATTAGGGTTG+AGG - chr1_2:47499239-47499258 None:intergenic 40.0%
ACGAAGAGAAACAGAGGAAA+AGG - chr1_2:47499265-47499284 None:intergenic 40.0%
CGATGGGAAATAGACAAAGA+TGG - chr1_2:47499288-47499307 None:intergenic 40.0%
CAACACGAGAAATGAAACGA+TGG - chr1_2:47499305-47499324 None:intergenic 40.0%
!! CATCAAAGGTATCTTCTTCC+TGG - chr1_2:47499347-47499366 None:intergenic 40.0%
GGTATCATCACCATCATCAA+AGG - chr1_2:47499361-47499380 None:intergenic 40.0%
TCTGGTTAGGAGAGTAACTA+GGG - chr1_2:47499383-47499402 None:intergenic 40.0%
!! GCTGAGATTTTTGAAAACGC+TGG + chr1_2:47499450-47499469 Msa0073650:CDS 40.0%
AAACGCTGGGAATGTTGAAA+TGG + chr1_2:47499464-47499483 Msa0073650:CDS 40.0%
TGGGAATGTTGAAATGGTTG+AGG + chr1_2:47499470-47499489 Msa0073650:CDS 40.0%
! AGGTTAATTGGATGCCCTTT+TGG + chr1_2:47499612-47499631 Msa0073650:intron 40.0%
ATAAGACTACTGGAAGAAGC+AGG + chr1_2:47499718-47499737 Msa0073650:CDS 40.0%
TAAGACTACTGGAAGAAGCA+GGG + chr1_2:47499719-47499738 Msa0073650:CDS 40.0%
TGTTACTATGTCTTCTGCTG+CGG + chr1_2:47499752-47499771 Msa0073650:CDS 40.0%
TTAGGTATACCCCCATGTAT+AGG + chr1_2:47500060-47500079 Msa0073650:intron 40.0%
TGTGGATAAGGGGATAACTA+TGG + chr1_2:47500096-47500115 Msa0073650:intron 40.0%
! GATCTGGATAAGGTATTACC+TGG - chr1_2:47500133-47500152 None:intergenic 40.0%
TCTTGGAAATTTACAGGTGG+TGG + chr1_2:47500281-47500300 Msa0073650:intron 40.0%
AGAGAATTGAGAGTGAATGC+TGG + chr1_2:47500309-47500328 Msa0073650:CDS 40.0%
CAAGGTTACCAACATGAACA+CGG - chr1_2:47500443-47500462 None:intergenic 40.0%
!! TTCATGTTGGTAACCTTGCT+TGG + chr1_2:47500445-47500464 Msa0073650:CDS 40.0%
!! TCATGTTGGTAACCTTGCTT+GGG + chr1_2:47500446-47500465 Msa0073650:CDS 40.0%
TTGGCACTTGAGTCATTGTT+TGG + chr1_2:47500480-47500499 Msa0073650:CDS 40.0%
! GAGTCATTGTTTGGTGAACA+AGG + chr1_2:47500489-47500508 Msa0073650:CDS 40.0%
! TGGTGAACAAGGACAAGTTT+TGG + chr1_2:47500500-47500519 Msa0073650:CDS 40.0%
!!! AGGACAAGTTTTGGAAGCAA+AGG + chr1_2:47500509-47500528 Msa0073650:CDS 40.0%
GTAATCTATGACAGGGAAAG+TGG + chr1_2:47500531-47500550 Msa0073650:CDS 40.0%
AGTGGAAGATCTAGAGGATT+TGG + chr1_2:47500549-47500568 Msa0073650:CDS 40.0%
! AGTGCTATTCGAACCTTAGA+TGG + chr1_2:47500606-47500625 Msa0073650:CDS 40.0%
TATGAAAGGGTTAAGTCCCT+TGG + chr1_2:47500755-47500774 Msa0073650:intron 40.0%
!! AATGGCTTTGAATCCTCCAA+GGG - chr1_2:47500774-47500793 None:intergenic 40.0%
GACGCAAAACTACAACTCAA+TGG - chr1_2:47500792-47500811 None:intergenic 40.0%
TTGACGCTTTGGTCTACTAT+CGG - chr1_2:47500938-47500957 None:intergenic 40.0%
!! AGACCAAAGCGTCAATTTTG+AGG + chr1_2:47500943-47500962 Msa0073650:CDS 40.0%
CTTGATCGGGTATAGATGAA+AGG - chr1_2:47500975-47500994 None:intergenic 40.0%
TGCAGGACATCTTAGAATCA+TGG + chr1_2:47501042-47501061 Msa0073650:intron 40.0%
TTTACTAATGCGAATGTGCC+TGG + chr1_2:47501407-47501426 Msa0073650:three_prime_UTR 40.0%
ACGGTTGCAAAATGAAAGGG+TGG - chr1_2:47499008-47499027 None:intergenic 45.0%
GGGAACGGTTGCAAAATGAA+AGG - chr1_2:47499012-47499031 None:intergenic 45.0%
GTGAGTGAGGGTTTGGAAAA+GGG - chr1_2:47499064-47499083 None:intergenic 45.0%
AGTGAGTGAGGGTTTGGAAA+AGG - chr1_2:47499065-47499084 None:intergenic 45.0%
GGGAGTGAAGAGAAACATTG+AGG - chr1_2:47499207-47499226 None:intergenic 45.0%
TAGGGTTGAGGGAAAGAGAA+GGG - chr1_2:47499227-47499246 None:intergenic 45.0%
TTAGGGTTGAGGGAAAGAGA+AGG - chr1_2:47499228-47499247 None:intergenic 45.0%
AGATGGACGAAGAGAAACAG+AGG - chr1_2:47499271-47499290 None:intergenic 45.0%
CTGGTTAGGAGAGTAACTAG+GGG - chr1_2:47499382-47499401 None:intergenic 45.0%
CTCTGGTTAGGAGAGTAACT+AGG - chr1_2:47499384-47499403 None:intergenic 45.0%
CTAGTTACTCTCCTAACCAG+AGG + chr1_2:47499382-47499401 Msa0073650:CDS 45.0%
CCAACAAACAACCTCTGGTT+AGG - chr1_2:47499396-47499415 None:intergenic 45.0%
CCTAACCAGAGGTTGTTTGT+TGG + chr1_2:47499393-47499412 Msa0073650:CDS 45.0%
GGTTACCAACAAACAACCTC+TGG - chr1_2:47499401-47499420 None:intergenic 45.0%
CACTGTCAACACTGAAAGGA+AGG - chr1_2:47499422-47499441 None:intergenic 45.0%
! TGAGCACTGTCAACACTGAA+AGG - chr1_2:47499426-47499445 None:intergenic 45.0%
AAGACTACTGGAAGAAGCAG+GGG + chr1_2:47499720-47499739 Msa0073650:CDS 45.0%
!! GGAAATTTACAGGTGGTGGA+TGG + chr1_2:47500285-47500304 Msa0073650:intron 45.0%
AAACGGGAATTCTCACTACG+AGG - chr1_2:47500348-47500367 None:intergenic 45.0%
CGTAGTGAGAATTCCCGTTT+CGG + chr1_2:47500348-47500367 Msa0073650:CDS 45.0%
AACGAGGATTCTCACCGAAA+CGG - chr1_2:47500365-47500384 None:intergenic 45.0%
! TTCGGTGAGAATCCTCGTTT+TGG + chr1_2:47500366-47500385 Msa0073650:CDS 45.0%
!! TTTGGTGGTGATCGTTCTAG+AGG + chr1_2:47500384-47500403 Msa0073650:CDS 45.0%
CTATCTGAAGAACCACCTCT+TGG - chr1_2:47500414-47500433 None:intergenic 45.0%
AGTGACAACCGTGTTCATGT+TGG + chr1_2:47500432-47500451 Msa0073650:CDS 45.0%
!! CATGTTGGTAACCTTGCTTG+GGG + chr1_2:47500447-47500466 Msa0073650:CDS 45.0%
AGGGAAAGTGGAAGATCTAG+AGG + chr1_2:47500543-47500562 Msa0073650:CDS 45.0%
TATTCGAACCTTAGATGGCG+CGG + chr1_2:47500611-47500630 Msa0073650:CDS 45.0%
!! CAATGGCTTTGAATCCTCCA+AGG - chr1_2:47500775-47500794 None:intergenic 45.0%
CAGATGATGTAAGACTCCAG+TGG - chr1_2:47500868-47500887 None:intergenic 45.0%
CACTGGAGTCTTACATCATC+TGG + chr1_2:47500866-47500885 Msa0073650:intron 45.0%
CATCTATACCCGATCAAGAG+AGG + chr1_2:47500977-47500996 Msa0073650:three_prime_UTR 45.0%
!!! TTTTAATTTAATTTAATCAA+TGG + chr1_2:47499998-47500017 Msa0073650:intron 5.0%
!! TTTCATAATTAAAAAAATTA+GGG - chr1_2:47500742-47500761 None:intergenic 5.0%
!!! TAATTTTTTTAATTATGAAA+GGG + chr1_2:47500742-47500761 Msa0073650:intron 5.0%
GAGGGTTTGGAAAAGGGTTG+AGG - chr1_2:47499058-47499077 None:intergenic 50.0%
GAAGAGAGTGAGTGAGGGTT+TGG - chr1_2:47499071-47499090 None:intergenic 50.0%
GGATGTTGCAGAGGTAGACA+TGG - chr1_2:47499151-47499170 None:intergenic 50.0%
ACTGGAAGAAGCAGGGGATT+TGG + chr1_2:47499726-47499745 Msa0073650:CDS 50.0%
TTCTGCTGCGGAAGTTGAAG+CGG + chr1_2:47499764-47499783 Msa0073650:CDS 50.0%
GAATTCTCACTACGAGGAGG+AGG - chr1_2:47500342-47500361 None:intergenic 50.0%
ACGAGGATTCTCACCGAAAC+GGG - chr1_2:47500364-47500383 None:intergenic 50.0%
! GGTGAGAATCCTCGTTTTGG+TGG + chr1_2:47500369-47500388 Msa0073650:CDS 50.0%
GAACGATCACCACCAAAACG+AGG - chr1_2:47500381-47500400 None:intergenic 50.0%
TCTGAAGAACCACCTCTTGG+AGG - chr1_2:47500411-47500430 None:intergenic 50.0%
AGTTGTCAACACCCCAAGCA+AGG - chr1_2:47500461-47500480 None:intergenic 50.0%
!! TGCTTGGGGTGTTGACAACT+TGG + chr1_2:47500461-47500480 Msa0073650:CDS 50.0%
!! GACTTTCAGTAGCGCTGATG+AGG + chr1_2:47500578-47500597 Msa0073650:CDS 50.0%
GAAAGGGTTAAGTCCCTTGG+AGG + chr1_2:47500758-47500777 Msa0073650:intron 50.0%
! TACTATCGGCTGGTGAGACT+CGG - chr1_2:47500924-47500943 None:intergenic 50.0%
TACCCGATCAAGAGAGGACT+CGG + chr1_2:47500983-47501002 Msa0073650:three_prime_UTR 50.0%
TACCGAGTCCTCTCTTGATC+GGG - chr1_2:47500988-47501007 None:intergenic 50.0%
GTACCGAGTCCTCTCTTGAT+CGG - chr1_2:47500989-47501008 None:intergenic 50.0%
GCAGGTAGTTGGGAGTTATG+TGG + chr1_2:47501115-47501134 Msa0073650:intron 50.0%
TTCTCACTACGAGGAGGAGG+TGG - chr1_2:47500339-47500358 None:intergenic 55.0%
CGGGAATTCTCACTACGAGG+AGG - chr1_2:47500345-47500364 None:intergenic 55.0%
!! CGTTCTAGAGGTCCTCCAAG+AGG + chr1_2:47500396-47500415 Msa0073650:CDS 55.0%
TCTAGAGGTCCTCCAAGAGG+TGG + chr1_2:47500399-47500418 Msa0073650:CDS 55.0%
CATGCTTACCGCGCCATCTA+AGG - chr1_2:47500622-47500641 None:intergenic 55.0%
CGCTTTGGTCTACTATCGGC+TGG - chr1_2:47500934-47500953 None:intergenic 55.0%
GCGGCTGCTCAGCAGTTGAA+TGG + chr1_2:47499783-47499802 Msa0073650:CDS 60.0%
TCACTACGAGGAGGAGGTGG+TGG - chr1_2:47500336-47500355 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 47498994 47501520 47498994 ID=Msa0073650;Name=Msa0073650
chr1_2 mRNA 47498994 47501520 47498994 ID=Msa0073650-mRNA-1;Parent=Msa0073650;Name=Msa0073650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=156|1|1|1|0.75|0.6|5|443|280
chr1_2 exon 47498994 47499491 47498994 ID=Msa0073650-mRNA-1:exon:14474;Parent=Msa0073650-mRNA-1
chr1_2 exon 47499708 47499809 47499708 ID=Msa0073650-mRNA-1:exon:14475;Parent=Msa0073650-mRNA-1
chr1_2 exon 47500297 47500632 47500297 ID=Msa0073650-mRNA-1:exon:14476;Parent=Msa0073650-mRNA-1
chr1_2 exon 47500901 47501004 47500901 ID=Msa0073650-mRNA-1:exon:14477;Parent=Msa0073650-mRNA-1
chr1_2 exon 47501119 47501520 47501119 ID=Msa0073650-mRNA-1:exon:14478;Parent=Msa0073650-mRNA-1
chr1_2 five_prime_UTR 47498994 47499149 47498994 ID=Msa0073650-mRNA-1:five_prime_utr;Parent=Msa0073650-mRNA-1
chr1_2 CDS 47499150 47499491 47499150 ID=Msa0073650-mRNA-1:cds;Parent=Msa0073650-mRNA-1
chr1_2 CDS 47499708 47499809 47499708 ID=Msa0073650-mRNA-1:cds;Parent=Msa0073650-mRNA-1
chr1_2 CDS 47500297 47500632 47500297 ID=Msa0073650-mRNA-1:cds;Parent=Msa0073650-mRNA-1
chr1_2 CDS 47500901 47500963 47500901 ID=Msa0073650-mRNA-1:cds;Parent=Msa0073650-mRNA-1
chr1_2 three_prime_UTR 47500964 47501004 47500964 ID=Msa0073650-mRNA-1:three_prime_utr;Parent=Msa0073650-mRNA-1
chr1_2 three_prime_UTR 47501119 47501520 47501119 ID=Msa0073650-mRNA-1:three_prime_utr;Parent=Msa0073650-mRNA-1
Gene Sequence

>Msa0073650

ATGTCTACCTCTGCAACATCCTTAGTACTTCCATCACTCTTCACCAAAAACTCCCCTCAATGTTTCTCTTCACTCCCTTCTCTTTCCCTCAACCCTAATTTCAAACCCTTTTCCTTTTCCTCTGTTTCTCTTCGTCCATCTTTGTCTATTTCCCATCGTTTCATTTCTCGTGTTGCTGTTTCTTCTGAATTTGACCAGGAAGAAGATACCTTTGATGATGGTGATGATACCCCTAGTTACTCTCCTAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAAAACGCTGGGAATGTTGAAATGGTTGAGGTGATTTATGATAAGACTACTGGAAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCTGCTGCGGAAGTTGAAGCGGCTGCTCAGCAGTTGAATGGTTATGTGGTGGATGGAAGAGAATTGAGAGTGAATGCTGGACCACCACCTCCTCCTCGTAGTGAGAATTCCCGTTTCGGTGAGAATCCTCGTTTTGGTGGTGATCGTTCTAGAGGTCCTCCAAGAGGTGGTTCTTCAGATAGTGACAACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTGGTGAACAAGGACAAGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGCTTTGTGACTTTCAGTAGCGCTGATGAGGTCAACAGTGCTATTCGAACCTTAGATGGCGCGGACTTGAATGGCAGAGCTATCCGAGTCTCACCAGCCGATAGTAGACCAAAGCGTCAATTTTGA
Protein sequence

>Msa0073650

MSTSATSLVLPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRSRGPPRGGSSDSDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVNSAIRTLDGADLNGRAIRVSPADSRPKRQF*