AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026110 MtrunA17_Chr1g0181111 93.515 293 6 1 1 293 1 280 0.0 539
Msa0026110 MtrunA17_Chr4g0058151 48.148 216 75 3 81 293 119 300 3.46e-58 188
Msa0026110 MtrunA17_Chr3g0116631 40.264 303 135 8 5 291 16 288 1.30e-56 184
Msa0026110 MtrunA17_Chr7g0267571 38.176 296 134 9 12 285 27 295 2.91e-46 158
Msa0026110 MtrunA17_Chr1g0177101 42.162 185 93 2 84 268 108 278 1.16e-41 145
Msa0026110 MtrunA17_Chr3g0087481 34.340 265 127 7 27 285 12 235 4.62e-34 124
Msa0026110 MtrunA17_Chr1g0168601 34.807 181 84 3 108 288 86 232 2.41e-31 117
Msa0026110 MtrunA17_Chr1g0168601 39.189 74 45 0 85 158 154 227 7.79e-12 63.9
Msa0026110 MtrunA17_Chr4g0035001 44.681 94 39 1 192 285 2 82 9.91e-20 84.0
Msa0026110 MtrunA17_Chr4g0035001 40.541 74 44 0 85 158 7 80 1.29e-11 62.0
Msa0026110 MtrunA17_Chr4g0035051 42.105 95 42 1 191 285 3 84 1.64e-18 79.7
Msa0026110 MtrunA17_Chr4g0035051 41.892 74 43 0 85 158 9 82 6.12e-12 61.6
Msa0026110 MtrunA17_Chr4g0061451 42.553 94 41 1 197 290 43 123 2.51e-18 82.8
Msa0026110 MtrunA17_Chr4g0061451 41.667 84 49 0 81 164 39 122 1.63e-14 72.0
Msa0026110 MtrunA17_Chr4g0035031 44.898 98 41 1 190 287 2 86 2.69e-18 80.9
Msa0026110 MtrunA17_Chr4g0035031 43.243 74 42 0 85 158 9 82 2.52e-13 67.4
Msa0026110 MtrunA17_Chr3g0086861 41.748 103 47 1 191 293 39 128 2.41e-17 81.6
Msa0026110 MtrunA17_Chr3g0086861 39.744 78 47 0 81 158 41 118 1.86e-11 64.3
Msa0026110 MtrunA17_Chr3g0121631 44.792 96 39 2 194 289 34 115 3.02e-17 77.0
Msa0026110 MtrunA17_Chr3g0121631 42.466 73 41 1 85 157 37 108 5.98e-11 59.7
Msa0026110 MtrunA17_Chr2g0290191 27.363 201 122 4 85 285 5 181 5.71e-17 80.9
Msa0026110 MtrunA17_Chr2g0288251 28.431 204 115 4 86 288 62 235 1.21e-16 79.3
Msa0026110 MtrunA17_Chr2g0288251 29.891 184 109 6 82 261 153 320 1.07e-13 70.9
Msa0026110 MtrunA17_Chr2g0328791 32.203 177 96 5 86 259 17 172 1.61e-16 79.3
Msa0026110 MtrunA17_Chr2g0328791 25.820 244 134 8 70 292 94 311 6.80e-11 62.4
Msa0026110 MtrunA17_Chr5g0447761 27.805 205 122 4 81 285 3 181 5.84e-16 77.8
Msa0026110 MtrunA17_Chr1g0153871 29.381 194 120 5 70 261 176 354 7.57e-16 77.4
Msa0026110 MtrunA17_Chr1g0153871 29.213 178 106 3 83 259 96 254 5.01e-14 72.0
Msa0026110 MtrunA17_Chr4g0074711 27.273 231 128 8 70 292 153 351 7.74e-16 77.0
Msa0026110 MtrunA17_Chr4g0074711 27.404 208 114 5 84 288 74 247 1.46e-14 73.6
Msa0026110 MtrunA17_Chr3g0101061 26.866 201 121 4 85 285 41 215 1.49e-15 76.6
Msa0026110 MtrunA17_Chr3g0135111 28.846 208 129 3 81 288 7 195 2.99e-15 75.1
Msa0026110 MtrunA17_Chr3g0119311 37.895 95 46 1 196 290 36 117 4.20e-15 70.9
Msa0026110 MtrunA17_Chr3g0119311 41.250 80 47 0 85 164 37 116 7.94e-15 70.1
Msa0026110 MtrunA17_Chr7g0219021 35.052 97 50 1 197 293 41 124 6.73e-15 72.8
Msa0026110 MtrunA17_Chr7g0219021 41.892 74 43 0 85 158 41 114 1.01e-13 69.7
Msa0026110 MtrunA17_Chr3g0133651 28.708 209 113 6 83 288 92 267 8.11e-15 74.3
Msa0026110 MtrunA17_Chr3g0133651 28.718 195 121 6 70 261 172 351 3.55e-14 72.4
Msa0026110 MtrunA17_Chr7g0219031 39.024 82 46 1 192 273 36 113 9.74e-15 69.3
Msa0026110 MtrunA17_Chr4g0044541 28.736 174 102 4 86 259 124 275 9.75e-15 74.3
Msa0026110 MtrunA17_Chr4g0044541 27.404 208 135 5 86 289 215 410 2.42e-12 67.0
Msa0026110 MtrunA17_Chr1g0153181 28.977 176 100 4 86 261 34 184 1.98e-14 73.6
Msa0026110 MtrunA17_Chr3g0120721 26.012 173 98 3 85 254 19 164 2.25e-14 72.4
Msa0026110 MtrunA17_Chr4g0045221 29.143 175 109 2 86 259 118 278 4.14e-14 72.0
Msa0026110 MtrunA17_Chr4g0045221 28.804 184 117 5 86 261 216 393 3.71e-11 63.2
Msa0026110 MtrunA17_Chr1g0186351 27.488 211 124 5 85 289 7 194 1.46e-13 70.5
Msa0026110 MtrunA17_Chr0c09g0493511 29.348 184 104 4 86 269 33 190 1.92e-13 70.5
Msa0026110 MtrunA17_Chr0c09g0493511 28.421 190 123 6 86 273 120 298 2.96e-12 66.6
Msa0026110 MtrunA17_Chr6g0466451 26.768 198 134 5 86 282 107 294 2.32e-13 70.1
Msa0026110 MtrunA17_Chr6g0466451 29.545 176 101 4 86 261 17 169 1.83e-12 67.4
Msa0026110 MtrunA17_Chr6g0465631 26.768 198 134 5 86 282 107 294 2.36e-13 70.1
Msa0026110 MtrunA17_Chr6g0465631 29.545 176 101 4 86 261 17 169 1.93e-12 67.4
Msa0026110 MtrunA17_Chr4g0070231 28.409 176 95 3 86 259 48 194 4.42e-13 68.9
Msa0026110 MtrunA17_Chr4g0070231 30.556 180 112 3 85 255 132 307 8.63e-13 68.2
Msa0026110 MtrunA17_Chr1g0201151 29.609 179 101 3 83 261 29 182 4.86e-13 69.3
Msa0026110 MtrunA17_Chr1g0201151 27.885 208 122 5 86 293 120 299 6.17e-13 68.9
Msa0026110 MtrunA17_Chr2g0278661 40.000 95 43 2 192 285 2 83 6.51e-13 67.0
Msa0026110 MtrunA17_Chr2g0278661 39.744 78 47 0 85 162 8 85 1.97e-12 65.9
Msa0026110 MtrunA17_Chr6g0465691 29.348 184 104 4 86 269 33 190 6.65e-13 68.6
Msa0026110 MtrunA17_Chr6g0465751 29.348 184 104 4 86 269 115 272 7.10e-13 68.9
Msa0026110 MtrunA17_Chr6g0465751 28.947 190 122 6 86 273 202 380 6.51e-11 62.8
Msa0026110 MtrunA17_Chr6g0466501 29.348 184 104 4 86 269 115 272 7.55e-13 68.6
Msa0026110 MtrunA17_Chr4g0050781 41.026 78 46 0 85 162 8 85 9.84e-13 65.9
Msa0026110 MtrunA17_Chr4g0050781 37.895 95 46 1 191 285 2 83 3.52e-11 61.6
Msa0026110 MtrunA17_Chr7g0265341 26.437 174 106 4 86 259 160 311 1.01e-12 68.2
Msa0026110 MtrunA17_Chr7g0265341 26.633 199 128 6 63 259 232 414 4.24e-12 66.6
Msa0026110 MtrunA17_Chr1g0210241 42.029 69 40 0 191 259 2 70 1.10e-12 67.0
Msa0026110 MtrunA17_Chr5g0411091 27.604 192 117 4 83 271 95 267 1.32e-12 67.0
Msa0026110 MtrunA17_Chr3g0088511 32.967 91 61 0 85 175 33 123 1.85e-12 63.5
Msa0026110 MtrunA17_Chr7g0266751 34.951 103 57 1 85 187 33 125 1.86e-12 63.5
Msa0026110 MtrunA17_Chr7g0266751 37.895 95 46 1 197 291 33 114 1.85e-11 60.8
Msa0026110 MtrunA17_Chr8g0344491 27.309 249 142 6 47 283 118 339 2.57e-12 66.6
Msa0026110 MtrunA17_Chr1g0201001 31.452 124 68 3 81 201 26 135 3.98e-12 66.6
Msa0026110 MtrunA17_Chr4g0058141 37.288 118 57 3 127 243 2 103 6.22e-12 61.2
Msa0026110 MtrunA17_Chr8g0383661 27.228 202 122 7 83 283 200 377 6.81e-12 65.9
Msa0026110 MtrunA17_Chr8g0383661 40.964 83 47 2 78 159 297 378 8.43e-11 62.4
Msa0026110 MtrunA17_Chr8g0375101 28.161 174 99 4 83 255 3 151 9.11e-12 65.1
Msa0026110 MtrunA17_Chr4g0031091 34.615 78 51 0 80 157 29 106 1.04e-11 60.8
Msa0026110 MtrunA17_Chr3g0139111 26.630 184 121 2 86 259 147 326 1.85e-11 64.3
Msa0026110 MtrunA17_Chr1g0179701 27.429 175 105 4 86 260 152 304 2.27e-11 64.3
Msa0026110 MtrunA17_Chr1g0163591 26.263 198 116 7 81 254 159 350 2.43e-11 64.3
Msa0026110 MtrunA17_Chr2g0327921 39.744 78 47 0 85 162 8 85 2.50e-11 58.9
Msa0026110 MtrunA17_Chr3g0129451 40.964 83 47 2 78 159 337 418 3.91e-11 63.5
Msa0026110 MtrunA17_Chr6g0449481 23.121 173 103 3 85 254 46 191 5.46e-11 62.8
Msa0026110 MtrunA17_Chr5g0402191 27.746 173 99 4 83 254 3 150 6.15e-11 62.4
Msa0026110 MtrunA17_Chr3g0132451 24.900 249 146 8 41 285 48 259 8.01e-11 61.6
Msa0026110 MtrunA17_Chr4g0068631 26.519 181 107 5 85 263 89 245 9.80e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026110 AT2G37220.1 59.761 251 80 5 49 293 54 289 7.31e-89 266
Msa0026110 AT5G50250.1 40.789 304 134 6 2 291 18 289 7.87e-57 185
Msa0026110 AT4G24770.1 46.753 231 92 2 62 292 128 327 1.04e-56 186
Msa0026110 AT4G24770.2 46.753 231 92 2 62 292 128 327 1.04e-56 186
Msa0026110 AT3G53460.1 58.101 179 56 6 16 177 14 190 1.45e-44 154
Msa0026110 AT3G53460.1 59.375 96 26 1 196 291 257 339 9.51e-30 115
Msa0026110 AT3G53460.1 48.810 84 43 0 85 168 258 341 8.64e-19 85.5
Msa0026110 AT3G53460.3 58.101 179 56 6 16 177 14 190 1.45e-44 154
Msa0026110 AT3G53460.3 59.375 96 26 1 196 291 257 339 9.51e-30 115
Msa0026110 AT3G53460.3 48.810 84 43 0 85 168 258 341 8.64e-19 85.5
Msa0026110 AT3G53460.2 58.101 179 56 6 16 177 14 190 1.45e-44 154
Msa0026110 AT3G53460.2 59.375 96 26 1 196 291 257 339 9.51e-30 115
Msa0026110 AT3G53460.2 48.810 84 43 0 85 168 258 341 8.64e-19 85.5
Msa0026110 AT3G52380.1 42.233 206 97 4 85 290 117 300 2.89e-44 153
Msa0026110 AT1G60000.1 34.364 291 149 7 4 288 2 256 1.11e-41 145
Msa0026110 AT3G53460.4 52.500 200 55 7 16 177 14 211 7.41e-41 145
Msa0026110 AT3G53460.4 59.375 96 26 1 196 291 278 360 1.44e-29 115
Msa0026110 AT3G53460.4 48.810 84 43 0 85 168 279 362 1.08e-18 85.5
Msa0026110 AT3G52150.2 38.462 208 104 3 78 285 70 253 6.36e-37 132
Msa0026110 AT3G52150.1 38.462 208 104 3 78 285 70 253 6.36e-37 132
Msa0026110 AT2G35410.1 30.682 264 155 6 11 266 22 265 7.76e-27 107
Msa0026110 AT1G01080.3 34.946 186 100 3 86 265 110 280 1.86e-24 100
Msa0026110 AT1G01080.1 35.429 175 93 2 86 254 110 270 9.33e-24 98.6
Msa0026110 AT1G01080.2 35.227 176 93 3 86 254 110 271 6.63e-23 96.3
Msa0026110 AT3G23830.2 46.237 93 37 1 196 288 35 114 7.33e-20 84.0
Msa0026110 AT3G23830.2 40.000 85 49 1 85 167 36 120 2.46e-13 66.2
Msa0026110 AT3G23830.1 46.237 93 37 1 196 288 35 114 7.33e-20 84.0
Msa0026110 AT3G23830.1 40.000 85 49 1 85 167 36 120 2.46e-13 66.2
Msa0026110 AT4G13850.4 44.086 93 39 1 197 289 36 115 2.53e-19 82.4
Msa0026110 AT4G13850.4 40.000 80 48 0 85 164 36 115 2.59e-13 66.2
Msa0026110 AT4G13850.3 44.086 93 39 1 197 289 36 115 3.70e-19 82.4
Msa0026110 AT4G13850.3 40.000 85 49 1 85 167 36 120 1.69e-13 67.0
Msa0026110 AT4G13850.2 44.086 93 39 1 197 289 36 115 4.62e-19 82.4
Msa0026110 AT4G13850.2 40.000 85 49 1 85 167 36 120 2.06e-13 67.0
Msa0026110 AT4G13850.1 44.086 93 39 1 197 289 36 115 5.22e-19 82.4
Msa0026110 AT4G13850.1 40.000 85 49 1 85 167 36 120 2.29e-13 67.0
Msa0026110 AT2G21660.2 44.211 95 40 1 191 285 3 84 1.89e-18 80.9
Msa0026110 AT2G21660.2 41.892 74 43 0 85 158 9 82 2.70e-11 61.2
Msa0026110 AT2G21660.1 44.211 95 40 1 191 285 3 84 2.80e-18 80.9
Msa0026110 AT2G21660.1 41.892 74 43 0 85 158 9 82 3.70e-11 61.2
Msa0026110 AT4G14300.1 30.769 208 119 5 85 289 7 192 3.44e-18 84.3
Msa0026110 AT4G14300.2 30.769 208 119 5 85 289 7 192 3.44e-18 84.3
Msa0026110 AT3G16380.1 29.779 272 154 9 1 259 119 366 1.05e-17 83.6
Msa0026110 AT5G40490.1 27.692 195 106 4 68 254 21 188 1.11e-16 80.1
Msa0026110 AT5G55550.2 25.871 201 127 4 85 285 7 185 2.05e-16 79.3
Msa0026110 AT5G55550.3 25.871 201 127 4 85 285 7 185 2.05e-16 79.3
Msa0026110 AT5G55550.6 25.871 201 127 4 85 285 7 185 2.05e-16 79.3
Msa0026110 AT5G55550.11 25.871 201 127 4 85 285 7 185 2.05e-16 79.3
Msa0026110 AT4G26650.2 25.243 206 125 4 85 285 13 194 2.68e-16 79.0
Msa0026110 AT4G26650.1 25.243 206 125 4 85 285 16 197 2.70e-16 79.0
Msa0026110 AT1G54080.1 32.258 186 99 4 86 255 150 324 2.74e-16 79.0
Msa0026110 AT1G54080.1 26.984 189 107 4 74 259 51 211 4.62e-11 63.5
Msa0026110 AT2G33410.1 30.288 208 120 5 85 289 7 192 2.79e-16 79.0
Msa0026110 AT5G55550.5 25.871 201 127 4 85 285 7 185 2.86e-16 79.0
Msa0026110 AT5G55550.4 25.871 201 127 4 85 285 7 185 2.86e-16 79.0
Msa0026110 AT5G55550.9 25.871 201 127 4 85 285 7 185 2.86e-16 79.0
Msa0026110 AT5G55550.7 25.871 201 127 4 85 285 7 185 2.86e-16 79.0
Msa0026110 AT5G55550.1 25.871 201 127 4 85 285 7 185 2.86e-16 79.0
Msa0026110 AT5G19350.1 32.571 175 97 4 86 259 26 180 3.56e-16 78.6
Msa0026110 AT5G19350.2 32.571 175 97 4 86 259 26 180 3.78e-16 78.6
Msa0026110 AT1G34140.1 31.250 176 112 4 86 261 121 287 4.37e-16 78.2
Msa0026110 AT5G61030.2 39.583 96 45 1 194 289 38 120 5.64e-16 77.0
Msa0026110 AT5G61030.2 44.595 74 41 0 85 158 41 114 2.19e-12 66.6
Msa0026110 AT5G61030.1 39.583 96 45 1 194 289 38 120 5.64e-16 77.0
Msa0026110 AT5G61030.1 44.595 74 41 0 85 158 41 114 2.19e-12 66.6
Msa0026110 AT4G39260.3 40.206 97 45 1 192 288 2 85 2.27e-15 70.5
Msa0026110 AT4G39260.3 39.189 74 45 0 85 158 7 80 4.64e-11 58.9
Msa0026110 AT1G17640.2 29.885 174 87 4 85 251 67 212 2.49e-15 75.9
Msa0026110 AT1G17640.1 29.885 174 87 4 85 251 67 212 2.49e-15 75.9
Msa0026110 AT1G17640.3 29.885 174 87 4 85 251 67 212 2.49e-15 75.9
Msa0026110 AT1G74230.1 42.391 92 39 2 194 285 32 109 4.52e-15 74.3
Msa0026110 AT1G74230.1 44.595 74 40 1 85 158 35 107 1.99e-11 63.9
Msa0026110 AT4G34110.1 27.523 218 120 4 74 291 26 205 1.00e-14 74.7
Msa0026110 AT4G34110.1 26.190 210 141 4 75 282 206 403 1.50e-11 65.1
Msa0026110 AT2G23350.1 30.114 176 98 3 86 261 48 198 1.04e-14 74.7
Msa0026110 AT2G23350.1 29.885 174 100 4 86 259 136 287 7.08e-14 72.4
Msa0026110 AT2G23350.1 30.769 182 104 5 86 261 227 392 5.04e-11 63.5
Msa0026110 AT1G49600.3 31.915 188 103 4 74 260 115 278 1.22e-14 74.3
Msa0026110 AT1G49600.3 30.270 185 115 5 82 261 211 386 6.57e-11 63.2
Msa0026110 AT1G49600.2 31.915 188 103 4 74 260 115 278 1.22e-14 74.3
Msa0026110 AT1G49600.2 30.270 185 115 5 82 261 211 386 6.57e-11 63.2
Msa0026110 AT1G54080.2 31.579 190 99 5 86 255 150 328 1.61e-14 73.9
Msa0026110 AT1G71770.1 29.310 174 103 3 86 259 148 301 1.79e-14 73.9
Msa0026110 AT1G71770.1 29.944 177 112 5 86 261 241 406 1.57e-12 68.2
Msa0026110 AT1G71770.1 28.333 180 103 4 82 261 57 210 1.09e-11 65.5
Msa0026110 AT1G71770.2 29.310 174 103 3 86 259 148 301 1.79e-14 73.9
Msa0026110 AT1G71770.2 29.944 177 112 5 86 261 241 406 1.57e-12 68.2
Msa0026110 AT1G71770.2 28.333 180 103 4 82 261 57 210 1.09e-11 65.5
Msa0026110 AT5G54900.1 27.536 207 112 5 86 288 62 234 2.67e-14 72.8
Msa0026110 AT4G39260.2 39.362 94 44 1 192 285 2 82 3.40e-14 68.6
Msa0026110 AT1G49600.1 31.915 188 103 4 74 260 115 278 4.13e-14 72.8
Msa0026110 AT1G49600.1 30.270 185 115 5 82 261 211 386 8.05e-11 62.8
Msa0026110 AT3G19130.1 31.383 188 104 4 74 260 104 267 5.04e-14 72.4
Msa0026110 AT3G07810.1 27.619 210 118 5 81 285 3 183 6.89e-14 72.0
Msa0026110 AT3G07810.2 27.619 210 118 5 81 285 3 183 7.36e-14 72.0
Msa0026110 AT5G40490.2 26.829 164 90 3 94 254 35 171 7.70e-14 71.6
Msa0026110 AT5G40490.2 34.653 101 63 1 83 183 112 209 5.63e-11 63.2
Msa0026110 AT3G13224.1 26.882 186 110 5 69 254 8 167 8.30e-14 69.7
Msa0026110 AT5G47620.1 25.871 201 123 6 85 285 7 181 8.33e-14 71.6
Msa0026110 AT5G47620.2 25.871 201 123 6 85 285 7 181 8.33e-14 71.6
Msa0026110 AT5G47620.5 25.871 201 123 6 85 285 7 181 8.33e-14 71.6
Msa0026110 AT4G39260.1 39.362 94 44 1 192 285 2 82 8.81e-14 68.6
Msa0026110 AT1G22760.1 31.638 177 95 6 86 259 138 291 1.32e-13 71.2
Msa0026110 AT1G22760.1 27.650 217 144 6 57 273 205 408 1.25e-12 68.6
Msa0026110 AT1G22760.1 27.778 180 104 4 82 261 47 200 2.75e-11 64.3
Msa0026110 AT1G49760.1 26.442 208 124 5 86 293 135 313 1.69e-13 71.2
Msa0026110 AT1G49760.1 28.643 199 128 4 86 282 226 412 1.41e-12 68.2
Msa0026110 AT1G49760.2 26.442 208 124 5 86 293 135 313 1.69e-13 71.2
Msa0026110 AT1G49760.2 28.643 199 128 4 86 282 226 412 1.41e-12 68.2
Msa0026110 AT1G47500.2 29.187 209 114 5 83 288 102 279 1.77e-13 70.1
Msa0026110 AT1G11650.1 28.431 204 113 5 86 288 64 235 1.79e-13 70.1
Msa0026110 AT1G11650.2 29.412 204 111 6 86 288 64 235 3.44e-13 69.7
Msa0026110 AT1G11650.2 28.646 192 113 6 72 259 147 318 5.53e-13 68.9
Msa0026110 AT5G06210.1 37.634 93 45 1 196 288 34 113 3.72e-13 66.2
Msa0026110 AT5G06210.1 37.838 74 46 0 85 158 35 108 8.37e-12 62.4
Msa0026110 AT3G13224.2 26.882 186 110 5 69 254 8 167 4.16e-13 69.3
Msa0026110 AT3G14100.1 29.046 241 129 7 47 270 115 330 4.99e-13 69.3
Msa0026110 AT5G09880.1 26.636 214 127 6 73 283 154 340 5.68e-13 69.3
Msa0026110 AT3G13224.3 25.731 171 105 3 84 254 10 158 6.02e-13 68.6
Msa0026110 AT1G47500.1 29.187 209 114 5 83 288 102 279 6.70e-13 68.9
Msa0026110 AT1G47500.1 27.064 218 127 6 82 293 197 388 3.66e-12 66.6
Msa0026110 AT1G47490.2 28.230 209 116 5 83 288 100 277 9.47e-13 67.8
Msa0026110 AT1G17370.2 27.236 246 143 6 47 283 110 328 1.25e-12 68.2
Msa0026110 AT4G39260.4 44.776 67 37 0 192 258 2 68 1.82e-12 63.2
Msa0026110 AT3G08000.1 38.298 94 51 1 85 171 42 135 2.50e-12 63.9
Msa0026110 AT3G08000.1 36.170 94 47 1 197 290 42 122 3.32e-11 60.5
Msa0026110 AT4G36960.1 29.480 173 96 4 83 254 2 149 2.77e-12 67.0
Msa0026110 AT4G36960.2 29.480 173 96 4 83 254 2 149 2.77e-12 67.0
Msa0026110 AT5G47620.4 24.545 220 124 6 85 285 7 203 2.90e-12 67.0
Msa0026110 AT1G47490.1 28.230 209 116 5 83 288 100 277 2.98e-12 67.0
Msa0026110 AT1G47490.1 26.267 217 130 7 82 293 195 386 6.38e-11 63.2
Msa0026110 AT1G17370.1 26.908 249 143 6 47 283 110 331 3.30e-12 67.0
Msa0026110 AT1G18630.1 37.000 100 50 1 188 287 28 114 3.48e-12 63.5
Msa0026110 AT3G26420.1 37.895 95 46 1 191 285 2 83 3.60e-12 65.5
Msa0026110 AT3G26420.1 35.714 84 54 0 79 162 2 85 6.18e-12 64.7
Msa0026110 AT4G27000.1 27.670 206 112 5 86 288 82 253 6.18e-12 65.9
Msa0026110 AT4G16280.3 27.749 191 116 5 74 264 110 278 9.11e-12 65.9
Msa0026110 AT4G16280.2 27.749 191 116 5 74 264 110 278 1.73e-11 65.1
Msa0026110 AT2G36660.1 27.841 176 102 4 86 261 26 176 1.80e-11 65.1
Msa0026110 AT4G16280.4 27.895 190 115 5 74 263 35 202 2.13e-11 64.7
Msa0026110 AT4G13860.1 44.595 74 41 0 85 158 4 77 3.36e-11 58.9
Msa0026110 AT1G48920.1 28.249 177 115 5 77 249 290 458 4.51e-11 63.5

Find 118 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGGAGTGTGATATTTA+TGG 0.138471 1_1:-49762683 None:intergenic
AAGGAAAAGGGTTTGAAATT+AGG 0.163448 1_1:-49762884 None:intergenic
GCAGAGGAAGACATGGTTTA+AGG 0.212418 1_1:-49762782 None:intergenic
AGGAAAAGGGTTTGAAATTA+GGG 0.296680 1_1:-49762883 None:intergenic
TCTATAGAATGAAGCTTGTT+AGG 0.297227 1_1:-49764847 None:intergenic
ACTGGAAGAAGCAGGGGATT+TGG 0.326987 1_1:+49763411 Msa0026110:CDS
AGTGGAAGATCTAGAGGATT+TGG 0.327784 1_1:+49764175 Msa0026110:CDS
CATGTTTACCGCGCCATCTA+AGG 0.341843 1_1:-49764245 None:intergenic
GAAGAGATTGAGTGAGGGTT+TGG 0.345753 1_1:-49762712 None:intergenic
CGTAGTGAGAACTCCCGTTT+TGG 0.363398 1_1:+49763974 Msa0026110:CDS
TTCATGTTGGTAACCTTGCT+TGG 0.366467 1_1:+49764071 Msa0026110:CDS
TCATGTTGGTAACCTTGCTT+GGG 0.376247 1_1:+49764072 Msa0026110:CDS
ATTGAGTGAGGGTTTGGAAA+AGG 0.383580 1_1:-49762706 None:intergenic
TTTGGTGAGAATCCTCGTTT+TGG 0.384959 1_1:+49763992 Msa0026110:CDS
GAAGACATGGTTTAAGGAAA+TGG 0.388390 1_1:-49762776 None:intergenic
CATCAAAGGTATCTTCTTCC+TGG 0.389538 1_1:-49762985 None:intergenic
TTTACTAATGCGAACGTGCC+TGG 0.391662 1_1:+49765034 Msa0026110:three_prime_UTR
TCTTATTGTTAGCAGGTAGT+TGG 0.394066 1_1:+49764731 Msa0026110:intron
AATCCTCAAAATTGACGCTT+TGG 0.396059 1_1:-49764573 None:intergenic
AGAAACAGAGGAAAAGGAAA+AGG 0.398906 1_1:-49762897 None:intergenic
TGCTTGGGGTGTTGACAACT+TGG 0.399190 1_1:+49764087 Msa0026110:CDS
TTGAGTGAGGGTTTGGAAAA+GGG 0.400208 1_1:-49762705 None:intergenic
ATGGTTTAAGGAAATGGATA+AGG 0.400740 1_1:-49762770 None:intergenic
TGGTGAACAAGGACAGGTTT+TGG 0.408469 1_1:+49764126 Msa0026110:CDS
TTATGGTTTACTTGTTATGT+TGG 0.412220 1_1:+49765081 Msa0026110:three_prime_UTR
AGTGCTATTCGAACCTTAGA+TGG 0.414306 1_1:+49764232 Msa0026110:CDS
CTTATTGTTAGCAGGTAGTT+GGG 0.430904 1_1:+49764732 Msa0026110:intron
ACGAGGATTCTCACCAAAAC+GGG 0.433272 1_1:-49763987 None:intergenic
ACCAATAAAGCGGTAAAATA+CGG 0.433398 1_1:-49764946 None:intergenic
GAAAGAATGCACTTCATACT+TGG 0.437055 1_1:+49764797 Msa0026110:three_prime_UTR
GGGTTTGAAATTAGGGTTGA+GGG 0.444181 1_1:-49762876 None:intergenic
TGCATTCTTTCACAAACAGT+TGG 0.447829 1_1:-49764785 None:intergenic
GTGATTTATGATAAGACTAC+TGG 0.448929 1_1:+49763393 Msa0026110:CDS
TTGGCACTTGAGTCATTGTT+TGG 0.449309 1_1:+49764106 Msa0026110:CDS
GAGGGTTTGGAAAAGGGTTG+AGG 0.450710 1_1:-49762699 None:intergenic
CCAACAAACAACCTCTGGTT+AGG 0.451368 1_1:-49763034 None:intergenic
GAAACAGAGGAAAAGGAAAA+GGG 0.452226 1_1:-49762896 None:intergenic
ACGAAGAGAAACAGAGGAAA+AGG 0.456325 1_1:-49762903 None:intergenic
TGAAAGGGTGCATGATGATA+AGG 0.465678 1_1:-49762637 None:intergenic
CGCTTTGGTCTACTATCAGC+TGG 0.467712 1_1:-49764558 None:intergenic
CCTAACCAGAGGTTGTTTGT+TGG 0.469968 1_1:+49763034 Msa0026110:CDS
TAAACCATAAAATAAATTTG+TGG 0.478718 1_1:-49765068 None:intergenic
CTATCTGAAGAACCACCTCT+TGG 0.481583 1_1:-49764037 None:intergenic
GGAGTGAAGAGAAACATTGA+GGG 0.482925 1_1:-49762844 None:intergenic
AACGAGGATTCTCACCAAAA+CGG 0.486728 1_1:-49763988 None:intergenic
CTCTGGTTAGGAGAGTAACT+AGG 0.488332 1_1:-49763022 None:intergenic
ATAAGACTACTGGAAGAAGC+AGG 0.490077 1_1:+49763403 Msa0026110:CDS
TCCTCTATTCAATATGATGC+AGG 0.491350 1_1:+49764276 Msa0026110:CDS
ATTGTTTGGTGAACAAGGAC+AGG 0.493154 1_1:+49764120 Msa0026110:CDS
GGGAGTGAAGAGAAACATTG+AGG 0.496008 1_1:-49762845 None:intergenic
GTACCGAGTCCTCTCTTGAT+CGG 0.497488 1_1:-49764613 None:intergenic
TACCGAGTCCTCTCTTGATC+GGG 0.500874 1_1:-49764612 None:intergenic
TAGGGTTGAGGGAAAGAGAA+GGG 0.515631 1_1:-49762865 None:intergenic
AAACGCTGGGAATGTTGAAA+TGG 0.516801 1_1:+49763105 Msa0026110:CDS
AAGCAAAGGTAATCTATGAC+AGG 0.517595 1_1:+49764149 Msa0026110:CDS
GTAATCTATGACAGGGAAAG+TGG 0.519710 1_1:+49764157 Msa0026110:CDS
TTAGGGTTGAGGGAAAGAGA+AGG 0.521062 1_1:-49762866 None:intergenic
ATTGAAGAAGAGATTGAGTG+AGG 0.521212 1_1:-49762718 None:intergenic
GTGTGATATTTATGGAAGTG+AGG 0.526453 1_1:-49762675 None:intergenic
GCGGCTGCTCAGCAGTTGAA+TGG 0.528626 1_1:+49763468 Msa0026110:CDS
TTGAAGAAGAGATTGAGTGA+GGG 0.530262 1_1:-49762717 None:intergenic
GAAGAAGATACCTTTGATGA+TGG 0.530298 1_1:+49762989 Msa0026110:CDS
GCAGGTAGTTGGGAGTTATG+TGG 0.532548 1_1:+49764742 Msa0026110:intron
TCTGAAGAACCACCTCTTGG+AGG 0.535648 1_1:-49764034 None:intergenic
GGTTACCAACAAACAACCTC+TGG 0.538562 1_1:-49763039 None:intergenic
TACTATCAGCTGGTGAGACT+CGG 0.543911 1_1:-49764548 None:intergenic
ACCTGCATCATATTGAATAG+AGG 0.544455 1_1:-49764277 None:intergenic
TGTGATATTTATGGAAGTGA+GGG 0.546239 1_1:-49762674 None:intergenic
TCTGGTTAGGAGAGTAACTA+GGG 0.549336 1_1:-49763021 None:intergenic
CGATGGGAAATAGACAAAGA+TGG 0.554421 1_1:-49762926 None:intergenic
ATTTATGGAAGTGAGGGGAA+CGG 0.557306 1_1:-49762668 None:intergenic
CACTGTCAACACTGAAAGGA+AGG 0.558406 1_1:-49763060 None:intergenic
GAAGAGTGATGGAAGTACTA+AGG 0.558474 1_1:-49762810 None:intergenic
CTTGATCGGGTATAGATGAA+AGG 0.560787 1_1:-49764599 None:intergenic
GGAACGGTTGCAAAATGAAA+GGG 0.564599 1_1:-49762652 None:intergenic
TGTTTCTTCTGAATTTGACC+AGG 0.566886 1_1:+49762967 Msa0026110:CDS
AGGGTTTGAAATTAGGGTTG+AGG 0.569323 1_1:-49762877 None:intergenic
GGAAATTTACAGGTGGTGGA+TGG 0.571010 1_1:+49763911 Msa0026110:intron
GAGTCATTGTTTGGTGAACA+AGG 0.574217 1_1:+49764115 Msa0026110:CDS
GACTTTCAGTAGCGCTGATG+AGG 0.578722 1_1:+49764204 Msa0026110:CDS
AGAGAATTGAGAGTGAATGC+TGG 0.579689 1_1:+49763935 Msa0026110:CDS
TTTGGTGGTGATCGTTCTAG+AGG 0.580010 1_1:+49764010 Msa0026110:CDS
TGAGCACTGTCAACACTGAA+AGG 0.583654 1_1:-49763064 None:intergenic
GGGAACGGTTGCAAAATGAA+AGG 0.587333 1_1:-49762653 None:intergenic
AGGGAAAGTGGAAGATCTAG+AGG 0.591000 1_1:+49764169 Msa0026110:CDS
GGTATCATCACCATCATCAA+AGG 0.592983 1_1:-49762999 None:intergenic
TGTTACTATGTCTTCTGCTG+CGG 0.604372 1_1:+49763437 Msa0026110:CDS
TACCCGATCAAGAGAGGACT+CGG 0.606814 1_1:+49764610 Msa0026110:three_prime_UTR
GGATGTTGCAGAGGAAGACA+TGG 0.611160 1_1:-49762789 None:intergenic
TGCATCATATTGAATAGAGG+AGG 0.611266 1_1:-49764274 None:intergenic
TAAGACTACTGGAAGAAGCA+GGG 0.613089 1_1:+49763404 Msa0026110:CDS
CAACACGAGAAATGAAACGA+TGG 0.613411 1_1:-49762943 None:intergenic
AACACGAGAAATGAAACGAT+GGG 0.615472 1_1:-49762942 None:intergenic
CATCTATACCCGATCAAGAG+AGG 0.617213 1_1:+49764604 Msa0026110:three_prime_UTR
TGGGAATGTTGAAATGGTTG+AGG 0.621531 1_1:+49763111 Msa0026110:CDS
TTCTGCTGCGGAAGTTGAAG+CGG 0.622597 1_1:+49763449 Msa0026110:CDS
AGTTGTCAACACCCCAAGCA+AGG 0.628607 1_1:-49764084 None:intergenic
AATCTACTCTACCAATAAAG+CGG 0.629633 1_1:-49764956 None:intergenic
GTGATATTTATGGAAGTGAG+GGG 0.631868 1_1:-49762673 None:intergenic
CATGTTGGTAACCTTGCTTG+GGG 0.635880 1_1:+49764073 Msa0026110:CDS
AACGGGAGTTCTCACTACGA+GGG 0.636934 1_1:-49763970 None:intergenic
AGCAAAGGTAATCTATGACA+GGG 0.637693 1_1:+49764150 Msa0026110:CDS
AAGACTACTGGAAGAAGCAG+GGG 0.638733 1_1:+49763405 Msa0026110:CDS
AAGTACTAAGGATGTTGCAG+AGG 0.643340 1_1:-49762798 None:intergenic
GCATCATATTGAATAGAGGA+GGG 0.645173 1_1:-49764273 None:intergenic
TCTAGAGGTCCTCCAAGAGG+TGG 0.648673 1_1:+49764025 Msa0026110:CDS
AGATGGACGAAGAGAAACAG+AGG 0.649696 1_1:-49762909 None:intergenic
ACGGGAGTTCTCACTACGAG+GGG 0.652442 1_1:-49763969 None:intergenic
CAAGGTTACCAACATGAACA+CGG 0.652532 1_1:-49764066 None:intergenic
GAGTGAAGAGAAACATTGAG+GGG 0.655321 1_1:-49762843 None:intergenic
AGTGACAACCGTGTTCATGT+TGG 0.658546 1_1:+49764058 Msa0026110:CDS
AAACGGGAGTTCTCACTACG+AGG 0.662477 1_1:-49763971 None:intergenic
CGTTCTAGAGGTCCTCCAAG+AGG 0.680337 1_1:+49764022 Msa0026110:CDS
TATTCGAACCTTAGATGGCG+CGG 0.688538 1_1:+49764237 Msa0026110:CDS
CTAGTTACTCTCCTAACCAG+AGG 0.690578 1_1:+49763023 Msa0026110:CDS
CGGGAGTTCTCACTACGAGG+GGG 0.698174 1_1:-49763968 None:intergenic
GAACGATCACCACCAAAACG+AGG 0.713335 1_1:-49764004 None:intergenic
CTGGTTAGGAGAGTAACTAG+GGG 0.742322 1_1:-49763020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATAATTTATTATAAAGTT+TGG + chr1_1:49763205-49763224 Msa0026110:intron 10.0%
!!! ATATGTATTTTATTAAAATG+TGG + chr1_1:49763748-49763767 Msa0026110:intron 10.0%
!! CTTTCATAATTAAAAAAATT+AGG - chr1_1:49764369-49764388 None:intergenic 10.0%
!!! CTAATTTTTTTAATTATGAA+AGG + chr1_1:49764367-49764386 Msa0026110:intron 10.0%
!! GATTAATTTATTACAAAGTT+TGG + chr1_1:49763278-49763297 Msa0026110:intron 15.0%
!!! GTGAATTTAATGTTAAATTT+TGG + chr1_1:49763353-49763372 Msa0026110:intron 15.0%
!! TTTAATAGTTACAAGTAATT+AGG + chr1_1:49763710-49763729 Msa0026110:intron 15.0%
!!! ATTTTATTAAAATGTGGATA+AGG + chr1_1:49763754-49763773 Msa0026110:intron 15.0%
!!! TTTTATTAAAATGTGGATAA+GGG + chr1_1:49763755-49763774 Msa0026110:intron 15.0%
!! TAAACCATAAAATAAATTTG+TGG - chr1_1:49765071-49765090 None:intergenic 15.0%
!!! TTATAAAGTTTGGCATTTTA+TGG + chr1_1:49763215-49763234 Msa0026110:intron 20.0%
!! CTTAGATGTTATAAACAAAA+TGG - chr1_1:49763880-49763899 None:intergenic 20.0%
!!! CATTTTGTTTATAACATCTA+AGG + chr1_1:49763878-49763897 Msa0026110:intron 20.0%
!!! AAACAATTTTGGAAATTTAC+AGG + chr1_1:49763901-49763920 Msa0026110:intron 20.0%
!! TATATTATGTATTTAACCAC+TGG + chr1_1:49764475-49764494 Msa0026110:intron 20.0%
!! TAGAACATTGCATATTATAT+AGG - chr1_1:49764648-49764667 None:intergenic 20.0%
!!! TCAACCACAAATTTATTTTA+TGG + chr1_1:49765064-49765083 Msa0026110:three_prime_UTR 20.0%
!! TGTTTAATTAGATACCCTTT+TGG + chr1_1:49763163-49763182 Msa0026110:intron 25.0%
!! CCAATAATTTTCATCCAAAA+GGG - chr1_1:49763180-49763199 None:intergenic 25.0%
!! CCTTTTGGATGAAAATTATT+GGG + chr1_1:49763178-49763197 Msa0026110:intron 25.0%
!! TTGGCATTTTATGGTTTAAT+TGG + chr1_1:49763224-49763243 Msa0026110:intron 25.0%
!! CCAATAATTTTCATCCAAAA+GGG - chr1_1:49763180-49763199 None:intergenic 25.0%
!! CCTTTTGGATGAAAATTATT+GGG + chr1_1:49763178-49763197 Msa0026110:intron 25.0%
!! TTGTTTAATTGAGTACCTTT+TGG + chr1_1:49763309-49763328 Msa0026110:intron 25.0%
!! ACCTTTTGGATGAAAAATAA+TGG + chr1_1:49763323-49763342 Msa0026110:intron 25.0%
!! CCTTTTGGATGAAAAATAAT+GGG + chr1_1:49763324-49763343 Msa0026110:intron 25.0%
!!! TTTGGAATTTGTGTTTTTTC+AGG + chr1_1:49763371-49763390 Msa0026110:intron 25.0%
! AGTTGTTTGAAAATTGAGTA+TGG + chr1_1:49763559-49763578 Msa0026110:intron 25.0%
! TGAAAATTGAGTATGGTAAT+TGG + chr1_1:49763566-49763585 Msa0026110:intron 25.0%
!! AACATCTAAGGAAACAATTT+TGG + chr1_1:49763890-49763909 Msa0026110:intron 25.0%
! TAGATTATGAGTTAGAATTC+AGG + chr1_1:49764340-49764359 Msa0026110:intron 25.0%
! AGATTATGAGTTAGAATTCA+GGG + chr1_1:49764341-49764360 Msa0026110:intron 25.0%
!!! ATCATCTGGTTTTTTTTTGT+AGG + chr1_1:49764506-49764525 Msa0026110:intron 25.0%
!!! TTTTTTTTGTAGGACTTGAA+TGG + chr1_1:49764516-49764535 Msa0026110:intron 25.0%
! ATTGCATATTATATAGGTGA+AGG - chr1_1:49764642-49764661 None:intergenic 25.0%
!!! TGTTTATTTTCCTCATGTAT+TGG + chr1_1:49764692-49764711 Msa0026110:intron 25.0%
!!! TTATGGTTTACTTGTTATGT+TGG + chr1_1:49765081-49765100 Msa0026110:three_prime_UTR 25.0%
TGTGATATTTATGGAAGTGA+GGG - chr1_1:49762677-49762696 None:intergenic 30.0%
ATGGTTTAAGGAAATGGATA+AGG - chr1_1:49762773-49762792 None:intergenic 30.0%
! AGGAAAAGGGTTTGAAATTA+GGG - chr1_1:49762886-49762905 None:intergenic 30.0%
! AAGGAAAAGGGTTTGAAATT+AGG - chr1_1:49762887-49762906 None:intergenic 30.0%
! CCCTTTTGGATGAAAATTAT+TGG + chr1_1:49763177-49763196 Msa0026110:intron 30.0%
! CCCAATAATTTTCATCCAAA+AGG - chr1_1:49763181-49763200 None:intergenic 30.0%
! CCCTTTTGGATGAAAATTAT+TGG + chr1_1:49763177-49763196 Msa0026110:intron 30.0%
! CCCAATAATTTTCATCCAAA+AGG - chr1_1:49763181-49763200 None:intergenic 30.0%
!! CCCATTATTTTTCATCCAAA+AGG - chr1_1:49763327-49763346 None:intergenic 30.0%
!! GATGAAAAATAATGGGTTTG+TGG + chr1_1:49763331-49763350 Msa0026110:intron 30.0%
GTGATTTATGATAAGACTAC+TGG + chr1_1:49763393-49763412 Msa0026110:CDS 30.0%
TAAAATACATATACCCCTGT+AGG - chr1_1:49763740-49763759 None:intergenic 30.0%
GTAACTCTTATATCTGAGTT+TGG + chr1_1:49763815-49763834 Msa0026110:intron 30.0%
ACCTATGTTACAAATGACTT+TGG + chr1_1:49763854-49763873 Msa0026110:intron 30.0%
!! CAATTTTGGAAATTTACAGG+TGG + chr1_1:49763904-49763923 Msa0026110:intron 30.0%
CATATTATATAGGTGAAGGA+TGG - chr1_1:49764638-49764657 None:intergenic 30.0%
AATATGCAATGTTCTAATGC+AGG + chr1_1:49764652-49764671 Msa0026110:intron 30.0%
TCTAACATCTTATTGTTAGC+AGG + chr1_1:49764724-49764743 Msa0026110:intron 30.0%
! TCTATAGAATGAAGCTTGTT+AGG - chr1_1:49764850-49764869 None:intergenic 30.0%
ACCAATAAAGCGGTAAAATA+CGG - chr1_1:49764949-49764968 None:intergenic 30.0%
AATCTACTCTACCAATAAAG+CGG - chr1_1:49764959-49764978 None:intergenic 30.0%
! TCAATTTTGCAACGATATTG+TGG + chr1_1:49765005-49765024 Msa0026110:three_prime_UTR 30.0%
!!! TTTGTGGTTGATAATTTTCC+AGG - chr1_1:49765055-49765074 None:intergenic 30.0%
GTGATATTTATGGAAGTGAG+GGG - chr1_1:49762676-49762695 None:intergenic 35.0%
GTGTGATATTTATGGAAGTG+AGG - chr1_1:49762678-49762697 None:intergenic 35.0%
! GTTGAGGAGTGTGATATTTA+TGG - chr1_1:49762686-49762705 None:intergenic 35.0%
TTGAAGAAGAGATTGAGTGA+GGG - chr1_1:49762720-49762739 None:intergenic 35.0%
ATTGAAGAAGAGATTGAGTG+AGG - chr1_1:49762721-49762740 None:intergenic 35.0%
!!! ATAAGGTTTTGAGAGAATGG+GGG - chr1_1:49762756-49762775 None:intergenic 35.0%
!!! GATAAGGTTTTGAGAGAATG+GGG - chr1_1:49762757-49762776 None:intergenic 35.0%
!!! GGATAAGGTTTTGAGAGAAT+GGG - chr1_1:49762758-49762777 None:intergenic 35.0%
!!! TGGATAAGGTTTTGAGAGAA+TGG - chr1_1:49762759-49762778 None:intergenic 35.0%
GAAGACATGGTTTAAGGAAA+TGG - chr1_1:49762779-49762798 None:intergenic 35.0%
GAAACAGAGGAAAAGGAAAA+GGG - chr1_1:49762899-49762918 None:intergenic 35.0%
AGAAACAGAGGAAAAGGAAA+AGG - chr1_1:49762900-49762919 None:intergenic 35.0%
AACACGAGAAATGAAACGAT+GGG - chr1_1:49762945-49762964 None:intergenic 35.0%
TGTTTCTTCTGAATTTGACC+AGG + chr1_1:49762967-49762986 Msa0026110:CDS 35.0%
GAAGAAGATACCTTTGATGA+TGG + chr1_1:49762989-49763008 Msa0026110:CDS 35.0%
!! CTGAGATTTTTGAAAACGCT+GGG + chr1_1:49763092-49763111 Msa0026110:CDS 35.0%
! GGTTTAATTGGATACCCTTT+TGG + chr1_1:49763236-49763255 Msa0026110:intron 35.0%
TGTGAGCAAATTGTGTACTA+TGG - chr1_1:49763660-49763679 None:intergenic 35.0%
AAGTAATTAGGTACTCCTAC+AGG + chr1_1:49763722-49763741 Msa0026110:intron 35.0%
AGTAATTAGGTACTCCTACA+GGG + chr1_1:49763723-49763742 Msa0026110:intron 35.0%
! TGTGGATAAGGGTATAACTA+TGG + chr1_1:49763766-49763785 Msa0026110:intron 35.0%
ACAATGAGTAGATCTGGATA+AGG - chr1_1:49763797-49763816 None:intergenic 35.0%
AGAGTTACAATGAGTAGATC+TGG - chr1_1:49763803-49763822 None:intergenic 35.0%
GCCAAAGTCATTTGTAACAT+AGG - chr1_1:49763858-49763877 None:intergenic 35.0%
!! TTTTGGAAATTTACAGGTGG+TGG + chr1_1:49763907-49763926 Msa0026110:intron 35.0%
AAGCAAAGGTAATCTATGAC+AGG + chr1_1:49764149-49764168 Msa0026110:CDS 35.0%
AGCAAAGGTAATCTATGACA+GGG + chr1_1:49764150-49764169 Msa0026110:CDS 35.0%
GCATCATATTGAATAGAGGA+GGG - chr1_1:49764276-49764295 None:intergenic 35.0%
TGCATCATATTGAATAGAGG+AGG - chr1_1:49764277-49764296 None:intergenic 35.0%
TCCTCTATTCAATATGATGC+AGG + chr1_1:49764276-49764295 Msa0026110:CDS 35.0%
ACCTGCATCATATTGAATAG+AGG - chr1_1:49764280-49764299 None:intergenic 35.0%
TCAACTCTTCATGTGTGAAT+TGG + chr1_1:49764439-49764458 Msa0026110:intron 35.0%
AATCCTCAAAATTGACGCTT+TGG - chr1_1:49764576-49764595 None:intergenic 35.0%
AACATTCAGTCCAATACATG+AGG - chr1_1:49764705-49764724 None:intergenic 35.0%
TCTTATTGTTAGCAGGTAGT+TGG + chr1_1:49764731-49764750 Msa0026110:intron 35.0%
CTTATTGTTAGCAGGTAGTT+GGG + chr1_1:49764732-49764751 Msa0026110:intron 35.0%
TGCATTCTTTCACAAACAGT+TGG - chr1_1:49764788-49764807 None:intergenic 35.0%
GAAAGAATGCACTTCATACT+TGG + chr1_1:49764797-49764816 Msa0026110:three_prime_UTR 35.0%
! TCCGTATTTTACCGCTTTAT+TGG + chr1_1:49764945-49764964 Msa0026110:three_prime_UTR 35.0%
GGAACGGTTGCAAAATGAAA+GGG - chr1_1:49762655-49762674 None:intergenic 40.0%
ATTTATGGAAGTGAGGGGAA+CGG - chr1_1:49762671-49762690 None:intergenic 40.0%
TTGAGTGAGGGTTTGGAAAA+GGG - chr1_1:49762708-49762727 None:intergenic 40.0%
ATTGAGTGAGGGTTTGGAAA+AGG - chr1_1:49762709-49762728 None:intergenic 40.0%
AAGTACTAAGGATGTTGCAG+AGG - chr1_1:49762801-49762820 None:intergenic 40.0%
!! GAAGAGTGATGGAAGTACTA+AGG - chr1_1:49762813-49762832 None:intergenic 40.0%
!!! GAGTTTTTGGTGAAGAGTGA+TGG - chr1_1:49762824-49762843 None:intergenic 40.0%
! GAAACATTGAGGGGAGTTTT+TGG - chr1_1:49762837-49762856 None:intergenic 40.0%
GAGTGAAGAGAAACATTGAG+GGG - chr1_1:49762846-49762865 None:intergenic 40.0%
GGAGTGAAGAGAAACATTGA+GGG - chr1_1:49762847-49762866 None:intergenic 40.0%
! GGGTTTGAAATTAGGGTTGA+GGG - chr1_1:49762879-49762898 None:intergenic 40.0%
! AGGGTTTGAAATTAGGGTTG+AGG - chr1_1:49762880-49762899 None:intergenic 40.0%
ACGAAGAGAAACAGAGGAAA+AGG - chr1_1:49762906-49762925 None:intergenic 40.0%
CGATGGGAAATAGACAAAGA+TGG - chr1_1:49762929-49762948 None:intergenic 40.0%
CAACACGAGAAATGAAACGA+TGG - chr1_1:49762946-49762965 None:intergenic 40.0%
!! CATCAAAGGTATCTTCTTCC+TGG - chr1_1:49762988-49763007 None:intergenic 40.0%
GGTATCATCACCATCATCAA+AGG - chr1_1:49763002-49763021 None:intergenic 40.0%
TCTGGTTAGGAGAGTAACTA+GGG - chr1_1:49763024-49763043 None:intergenic 40.0%
!! GCTGAGATTTTTGAAAACGC+TGG + chr1_1:49763091-49763110 Msa0026110:CDS 40.0%
AAACGCTGGGAATGTTGAAA+TGG + chr1_1:49763105-49763124 Msa0026110:CDS 40.0%
TGGGAATGTTGAAATGGTTG+AGG + chr1_1:49763111-49763130 Msa0026110:CDS 40.0%
ATAAGACTACTGGAAGAAGC+AGG + chr1_1:49763403-49763422 Msa0026110:CDS 40.0%
TAAGACTACTGGAAGAAGCA+GGG + chr1_1:49763404-49763423 Msa0026110:CDS 40.0%
TGTTACTATGTCTTCTGCTG+CGG + chr1_1:49763437-49763456 Msa0026110:CDS 40.0%
GTAATTAGGTACTCCTACAG+GGG + chr1_1:49763724-49763743 Msa0026110:intron 40.0%
AGAGAATTGAGAGTGAATGC+TGG + chr1_1:49763935-49763954 Msa0026110:CDS 40.0%
AACGAGGATTCTCACCAAAA+CGG - chr1_1:49763991-49764010 None:intergenic 40.0%
! TTTGGTGAGAATCCTCGTTT+TGG + chr1_1:49763992-49764011 Msa0026110:CDS 40.0%
CAAGGTTACCAACATGAACA+CGG - chr1_1:49764069-49764088 None:intergenic 40.0%
!! TTCATGTTGGTAACCTTGCT+TGG + chr1_1:49764071-49764090 Msa0026110:CDS 40.0%
!! TCATGTTGGTAACCTTGCTT+GGG + chr1_1:49764072-49764091 Msa0026110:CDS 40.0%
TTGGCACTTGAGTCATTGTT+TGG + chr1_1:49764106-49764125 Msa0026110:CDS 40.0%
! GAGTCATTGTTTGGTGAACA+AGG + chr1_1:49764115-49764134 Msa0026110:CDS 40.0%
! ATTGTTTGGTGAACAAGGAC+AGG + chr1_1:49764120-49764139 Msa0026110:CDS 40.0%
GTAATCTATGACAGGGAAAG+TGG + chr1_1:49764157-49764176 Msa0026110:CDS 40.0%
AGTGGAAGATCTAGAGGATT+TGG + chr1_1:49764175-49764194 Msa0026110:CDS 40.0%
! AGTGCTATTCGAACCTTAGA+TGG + chr1_1:49764232-49764251 Msa0026110:CDS 40.0%
TATGAAAGGGTTAAGTCCCT+TGG + chr1_1:49764381-49764400 Msa0026110:intron 40.0%
!! AATGGCTTTGAATCCTCCAA+GGG - chr1_1:49764400-49764419 None:intergenic 40.0%
GACGCAAAACTACAACTCAA+TGG - chr1_1:49764418-49764437 None:intergenic 40.0%
!! AGACCAAAGCGTCAATTTTG+AGG + chr1_1:49764570-49764589 Msa0026110:CDS 40.0%
CTTGATCGGGTATAGATGAA+AGG - chr1_1:49764602-49764621 None:intergenic 40.0%
TGCAGGACATCTTAGAATCA+TGG + chr1_1:49764669-49764688 Msa0026110:intron 40.0%
GGGAACGGTTGCAAAATGAA+AGG - chr1_1:49762656-49762675 None:intergenic 45.0%
GAAGAGATTGAGTGAGGGTT+TGG - chr1_1:49762715-49762734 None:intergenic 45.0%
TGAGAGAATGGGGGAAAGTA+GGG - chr1_1:49762747-49762766 None:intergenic 45.0%
TTGAGAGAATGGGGGAAAGT+AGG - chr1_1:49762748-49762767 None:intergenic 45.0%
GCAGAGGAAGACATGGTTTA+AGG - chr1_1:49762785-49762804 None:intergenic 45.0%
GGGAGTGAAGAGAAACATTG+AGG - chr1_1:49762848-49762867 None:intergenic 45.0%
TAGGGTTGAGGGAAAGAGAA+GGG - chr1_1:49762868-49762887 None:intergenic 45.0%
TTAGGGTTGAGGGAAAGAGA+AGG - chr1_1:49762869-49762888 None:intergenic 45.0%
AGATGGACGAAGAGAAACAG+AGG - chr1_1:49762912-49762931 None:intergenic 45.0%
CTGGTTAGGAGAGTAACTAG+GGG - chr1_1:49763023-49763042 None:intergenic 45.0%
CTCTGGTTAGGAGAGTAACT+AGG - chr1_1:49763025-49763044 None:intergenic 45.0%
CTAGTTACTCTCCTAACCAG+AGG + chr1_1:49763023-49763042 Msa0026110:CDS 45.0%
CCAACAAACAACCTCTGGTT+AGG - chr1_1:49763037-49763056 None:intergenic 45.0%
CCTAACCAGAGGTTGTTTGT+TGG + chr1_1:49763034-49763053 Msa0026110:CDS 45.0%
GGTTACCAACAAACAACCTC+TGG - chr1_1:49763042-49763061 None:intergenic 45.0%
CACTGTCAACACTGAAAGGA+AGG - chr1_1:49763063-49763082 None:intergenic 45.0%
! TGAGCACTGTCAACACTGAA+AGG - chr1_1:49763067-49763086 None:intergenic 45.0%
AAGACTACTGGAAGAAGCAG+GGG + chr1_1:49763405-49763424 Msa0026110:CDS 45.0%
!! GGAAATTTACAGGTGGTGGA+TGG + chr1_1:49763911-49763930 Msa0026110:intron 45.0%
ACGAGGATTCTCACCAAAAC+GGG - chr1_1:49763990-49764009 None:intergenic 45.0%
!! TTTGGTGGTGATCGTTCTAG+AGG + chr1_1:49764010-49764029 Msa0026110:CDS 45.0%
CTATCTGAAGAACCACCTCT+TGG - chr1_1:49764040-49764059 None:intergenic 45.0%
AGTGACAACCGTGTTCATGT+TGG + chr1_1:49764058-49764077 Msa0026110:CDS 45.0%
!! CATGTTGGTAACCTTGCTTG+GGG + chr1_1:49764073-49764092 Msa0026110:CDS 45.0%
! TGGTGAACAAGGACAGGTTT+TGG + chr1_1:49764126-49764145 Msa0026110:CDS 45.0%
!!! AGGACAGGTTTTGGAAGCAA+AGG + chr1_1:49764135-49764154 Msa0026110:CDS 45.0%
AGGGAAAGTGGAAGATCTAG+AGG + chr1_1:49764169-49764188 Msa0026110:CDS 45.0%
TATTCGAACCTTAGATGGCG+CGG + chr1_1:49764237-49764256 Msa0026110:CDS 45.0%
!! CAATGGCTTTGAATCCTCCA+AGG - chr1_1:49764401-49764420 None:intergenic 45.0%
TACTATCAGCTGGTGAGACT+CGG - chr1_1:49764551-49764570 None:intergenic 45.0%
CATCTATACCCGATCAAGAG+AGG + chr1_1:49764604-49764623 Msa0026110:three_prime_UTR 45.0%
TTTACTAATGCGAACGTGCC+TGG + chr1_1:49765034-49765053 Msa0026110:three_prime_UTR 45.0%
!! TTTCATAATTAAAAAAATTA+GGG - chr1_1:49764368-49764387 None:intergenic 5.0%
!!! TAATTTTTTTAATTATGAAA+GGG + chr1_1:49764368-49764387 Msa0026110:intron 5.0%
GAGGGTTTGGAAAAGGGTTG+AGG - chr1_1:49762702-49762721 None:intergenic 50.0%
GGATGTTGCAGAGGAAGACA+TGG - chr1_1:49762792-49762811 None:intergenic 50.0%
ACTGGAAGAAGCAGGGGATT+TGG + chr1_1:49763411-49763430 Msa0026110:CDS 50.0%
TTCTGCTGCGGAAGTTGAAG+CGG + chr1_1:49763449-49763468 Msa0026110:CDS 50.0%
AACGGGAGTTCTCACTACGA+GGG - chr1_1:49763973-49763992 None:intergenic 50.0%
AAACGGGAGTTCTCACTACG+AGG - chr1_1:49763974-49763993 None:intergenic 50.0%
! CGTAGTGAGAACTCCCGTTT+TGG + chr1_1:49763974-49763993 Msa0026110:CDS 50.0%
! GGTGAGAATCCTCGTTTTGG+TGG + chr1_1:49763995-49764014 Msa0026110:CDS 50.0%
GAACGATCACCACCAAAACG+AGG - chr1_1:49764007-49764026 None:intergenic 50.0%
TCTGAAGAACCACCTCTTGG+AGG - chr1_1:49764037-49764056 None:intergenic 50.0%
AGTTGTCAACACCCCAAGCA+AGG - chr1_1:49764087-49764106 None:intergenic 50.0%
!! TGCTTGGGGTGTTGACAACT+TGG + chr1_1:49764087-49764106 Msa0026110:CDS 50.0%
!! GACTTTCAGTAGCGCTGATG+AGG + chr1_1:49764204-49764223 Msa0026110:CDS 50.0%
CATGTTTACCGCGCCATCTA+AGG - chr1_1:49764248-49764267 None:intergenic 50.0%
GAAAGGGTTAAGTCCCTTGG+AGG + chr1_1:49764384-49764403 Msa0026110:intron 50.0%
CAGATGATGCAAGACTCCAG+TGG - chr1_1:49764494-49764513 None:intergenic 50.0%
CACTGGAGTCTTGCATCATC+TGG + chr1_1:49764492-49764511 Msa0026110:intron 50.0%
CGCTTTGGTCTACTATCAGC+TGG - chr1_1:49764561-49764580 None:intergenic 50.0%
TACCCGATCAAGAGAGGACT+CGG + chr1_1:49764610-49764629 Msa0026110:three_prime_UTR 50.0%
TACCGAGTCCTCTCTTGATC+GGG - chr1_1:49764615-49764634 None:intergenic 50.0%
GTACCGAGTCCTCTCTTGAT+CGG - chr1_1:49764616-49764635 None:intergenic 50.0%
GCAGGTAGTTGGGAGTTATG+TGG + chr1_1:49764742-49764761 Msa0026110:intron 50.0%
ACGGGAGTTCTCACTACGAG+GGG - chr1_1:49763972-49763991 None:intergenic 55.0%
!! CGTTCTAGAGGTCCTCCAAG+AGG + chr1_1:49764022-49764041 Msa0026110:CDS 55.0%
TCTAGAGGTCCTCCAAGAGG+TGG + chr1_1:49764025-49764044 Msa0026110:CDS 55.0%
GCGGCTGCTCAGCAGTTGAA+TGG + chr1_1:49763468-49763487 Msa0026110:CDS 60.0%
TTCTCACTACGAGGGGGAGG+TGG - chr1_1:49763965-49763984 None:intergenic 60.0%
GAGTTCTCACTACGAGGGGG+AGG - chr1_1:49763968-49763987 None:intergenic 60.0%
CGGGAGTTCTCACTACGAGG+GGG - chr1_1:49763971-49763990 None:intergenic 60.0%
TCACTACGAGGGGGAGGTGG+TGG - chr1_1:49763962-49763981 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49762638 49765125 49762638 ID=Msa0026110;Name=Msa0026110
chr1_1 mRNA 49762638 49765125 49762638 ID=Msa0026110-mRNA-1;Parent=Msa0026110;Name=Msa0026110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=153|0.75|0.8|1|0.75|0.6|5|421|293
chr1_1 exon 49762638 49763132 49762638 ID=Msa0026110-mRNA-1:exon:14350;Parent=Msa0026110-mRNA-1
chr1_1 exon 49763393 49763494 49763393 ID=Msa0026110-mRNA-1:exon:14351;Parent=Msa0026110-mRNA-1
chr1_1 exon 49763923 49764297 49763923 ID=Msa0026110-mRNA-1:exon:14352;Parent=Msa0026110-mRNA-1
chr1_1 exon 49764528 49764631 49764528 ID=Msa0026110-mRNA-1:exon:14353;Parent=Msa0026110-mRNA-1
chr1_1 exon 49764746 49765125 49764746 ID=Msa0026110-mRNA-1:exon:14354;Parent=Msa0026110-mRNA-1
chr1_1 five_prime_UTR 49762638 49762790 49762638 ID=Msa0026110-mRNA-1:five_prime_utr;Parent=Msa0026110-mRNA-1
chr1_1 CDS 49762791 49763132 49762791 ID=Msa0026110-mRNA-1:cds;Parent=Msa0026110-mRNA-1
chr1_1 CDS 49763393 49763494 49763393 ID=Msa0026110-mRNA-1:cds;Parent=Msa0026110-mRNA-1
chr1_1 CDS 49763923 49764297 49763923 ID=Msa0026110-mRNA-1:cds;Parent=Msa0026110-mRNA-1
chr1_1 CDS 49764528 49764590 49764528 ID=Msa0026110-mRNA-1:cds;Parent=Msa0026110-mRNA-1
chr1_1 three_prime_UTR 49764591 49764631 49764591 ID=Msa0026110-mRNA-1:three_prime_utr;Parent=Msa0026110-mRNA-1
chr1_1 three_prime_UTR 49764746 49765125 49764746 ID=Msa0026110-mRNA-1:three_prime_utr;Parent=Msa0026110-mRNA-1
Gene Sequence

>Msa0026110

ATGTCTTCCTCTGCAACATCCTTAGTACTTCCATCACTCTTCACCAAAAACTCCCCTCAATGTTTCTCTTCACTCCCTTCTCTTTCCCTCAACCCTAATTTCAAACCCTTTTCCTTTTCCTCTGTTTCTCTTCGTCCATCTTTGTCTATTTCCCATCGTTTCATTTCTCGTGTTGCTGTTTCTTCTGAATTTGACCAGGAAGAAGATACCTTTGATGATGGTGATGATACCCCTAGTTACTCTCCTAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAAAACGCTGGGAATGTTGAAATGGTTGAGGTGATTTATGATAAGACTACTGGAAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCTGCTGCGGAAGTTGAAGCGGCTGCTCAGCAGTTGAATGGCTATGTGGTGGATGGAAGAGAATTGAGAGTGAATGCTGGACCACCACCTCCCCCTCGTAGTGAGAACTCCCGTTTTGGTGAGAATCCTCGTTTTGGTGGTGATCGTTCTAGAGGTCCTCCAAGAGGTGGTTCTTCAGATAGTGACAACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTGGTGAACAAGGACAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGCTTTGTGACTTTCAGTAGCGCTGATGAGGTCAACAGTGCTATTCGAACCTTAGATGGCGCGGTAAACATGCAAATCCCTCCTCTATTCAATATGATGCAGGACTTGAATGGCAGAGCTATCCGAGTCTCACCAGCTGATAGTAGACCAAAGCGTCAATTTTGA
Protein sequence

>Msa0026110

MSSSATSLVLPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRSRGPPRGGSSDSDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVNSAIRTLDGAVNMQIPPLFNMMQDLNGRAIRVSPADSRPKRQF*