Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714170 | XP_003611626.2 | 96.660 | 539 | 9 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714170 | sp|Q9SZV0|RNC1_ARATH | 77.909 | 507 | 101 | 3 | 34 | 539 | 41 | 537 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714170 | G7K3W4 | 96.660 | 539 | 9 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1068 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026110 | Msa0714170 | 0.843356 | 1.473354e-58 | -8.615850e-47 |
| Msa0073650 | Msa0714170 | 0.803663 | 3.130492e-49 | -8.615850e-47 |
| Msa0639370 | Msa0714170 | 0.843050 | 1.777864e-58 | -8.615850e-47 |
| Msa0682460 | Msa0714170 | 0.820555 | 6.447455e-53 | -8.615850e-47 |
| Msa0714030 | Msa0714170 | 0.991786 | 1.561604e-189 | -8.615850e-47 |
| Msa0714170 | Msa0756470 | 0.884056 | 2.656503e-71 | -8.615850e-47 |
| Msa0714170 | Msa0819440 | 0.803035 | 4.224640e-49 | -8.615850e-47 |
| Msa0714170 | Msa0835520 | 0.901704 | 2.045802e-78 | -8.615850e-47 |
| Msa0714170 | Msa1033790 | 0.806341 | 8.622992e-50 | -8.615850e-47 |
| Msa0714170 | Msa1035510 | 0.828924 | 6.859250e-55 | -8.615850e-47 |
| Msa0714170 | Msa1041410 | -0.804104 | 2.535270e-49 | -8.615850e-47 |
| Msa0714170 | Msa1075420 | 0.822584 | 2.190931e-53 | -8.615850e-47 |
| Msa0714170 | Msa1116550 | 0.801908 | 7.211269e-49 | -8.615850e-47 |
| Msa0714170 | Msa1118150 | 0.810573 | 1.077788e-50 | -8.615850e-47 |
| Msa0714170 | Msa1163050 | 0.803991 | 2.676672e-49 | -8.615850e-47 |
| Msa0714170 | Msa1166600 | -0.802512 | 5.416210e-49 | -8.615850e-47 |
| Msa0714170 | Msa1272210 | 0.801021 | 1.096057e-48 | -8.615850e-47 |
| Msa0714170 | Msa1281270 | 0.822006 | 2.984285e-53 | -8.615850e-47 |
| Msa0714170 | Msa1309960 | 0.824742 | 6.846635e-54 | -8.615850e-47 |
| Msa0714170 | Msa1320380 | 0.814316 | 1.639521e-51 | -8.615850e-47 |
| Msa0714170 | Msa1388240 | 0.991178 | 2.740166e-186 | -8.615850e-47 |
| Msa0121800 | Msa0714170 | 0.854179 | 1.462492e-61 | -8.615850e-47 |
| Msa0166570 | Msa0714170 | 0.851423 | 8.961266e-61 | -8.615850e-47 |
| Msa0171920 | Msa0714170 | 0.819839 | 9.404204e-53 | -8.615850e-47 |
| Msa0464860 | Msa0714170 | 0.815070 | 1.115920e-51 | -8.615850e-47 |
| Msa0481490 | Msa0714170 | 0.815412 | 9.367626e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714170 | MtrunA17_Chr5g0401461 | 95.918 | 539 | 9 | 1 | 1 | 539 | 1 | 526 | 0.0 | 1058 |
| Msa0714170 | MtrunA17_Chr4g0053831 | 70.874 | 515 | 129 | 6 | 26 | 537 | 23 | 519 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714170 | AT4G37510.1 | 77.909 | 507 | 101 | 3 | 34 | 539 | 41 | 537 | 0.0 | 823 |
| Msa0714170 | AT2G48121.2 | 75.325 | 77 | 19 | 0 | 463 | 539 | 1 | 77 | 4.47e-34 | 124 |
| Msa0714170 | AT2G48121.1 | 75.000 | 56 | 14 | 0 | 484 | 539 | 20 | 75 | 4.91e-22 | 90.5 |
Find 142 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCGTAGGTCGGTATTT+TGG | 0.109591 | 5_1:+6800345 | Msa0714170:intron |
| GTTTGATACTTTGTTGTATT+TGG | 0.144675 | 5_1:+6799109 | Msa0714170:CDS |
| GGACTCTCATATCTTGTTTA+TGG | 0.145537 | 5_1:+6803010 | Msa0714170:CDS |
| AATGAGAAGTTAGTTGGTTT+TGG | 0.179441 | 5_1:-6798660 | None:intergenic |
| GCAAGATATTGTTGCTTATA+AGG | 0.188751 | 5_1:+6800535 | Msa0714170:CDS |
| CCGATGAGGGAGAGAGTTTA+TGG | 0.193361 | 5_1:+6799275 | Msa0714170:CDS |
| GGAGGGGTTGTGAAGATTAA+TGG | 0.211332 | 5_1:-6798550 | None:intergenic |
| TTCCTGGCTTCGGTAATTTC+TGG | 0.213137 | 5_1:-6800947 | None:intergenic |
| GGGTTTGTGTTGCTGGGTTT+TGG | 0.218590 | 5_1:-6798472 | None:intergenic |
| GATTATTTGAAAATTCAATT+TGG | 0.228145 | 5_1:+6803394 | Msa0714170:three_prime_UTR |
| CATTGTAGATGAAGGGGTTT+GGG | 0.240337 | 5_1:-6798495 | None:intergenic |
| GATATTTCCTTATGATAATA+TGG | 0.242859 | 5_1:+6799355 | Msa0714170:CDS |
| TCTCATATTTAGACCTCTTT+AGG | 0.265901 | 5_1:-6803088 | None:intergenic |
| GGGGCAATCTATCTTTGTTT+TGG | 0.268972 | 5_1:+6800377 | Msa0714170:CDS |
| TTAACAATGCCGATAAATTA+TGG | 0.272123 | 5_1:+6798997 | Msa0714170:CDS |
| TTGATAGTGGAAAATAAAAT+TGG | 0.288695 | 5_1:-6798571 | None:intergenic |
| GACTCTCATATCTTGTTTAT+GGG | 0.294493 | 5_1:+6803011 | Msa0714170:CDS |
| ATCGATTCAGAGGAAATATA+TGG | 0.308151 | 5_1:+6800858 | Msa0714170:CDS |
| GATGAGAATGAGAAGTTAGT+TGG | 0.309923 | 5_1:-6798666 | None:intergenic |
| ATGTTAGGTCTGGGCATTCT+AGG | 0.312555 | 5_1:+6799171 | Msa0714170:CDS |
| AAAAGAACACGGTAGACTTC+TGG | 0.315797 | 5_1:-6800404 | None:intergenic |
| ATTCTGTCTGTCATTTCTAA+TGG | 0.317291 | 5_1:-6800923 | None:intergenic |
| ATTATTTGAAAATTCAATTT+GGG | 0.324240 | 5_1:+6803395 | Msa0714170:three_prime_UTR |
| GAGGGGTTGTGAAGATTAAT+GGG | 0.325613 | 5_1:-6798549 | None:intergenic |
| GGTAGACAAGAACTTAATAA+TGG | 0.332729 | 5_1:-6798963 | None:intergenic |
| ACATTGTAGATGAAGGGGTT+TGG | 0.336926 | 5_1:-6798496 | None:intergenic |
| GAGAGAGTTTATGGGTTGAT+TGG | 0.340372 | 5_1:+6799284 | Msa0714170:CDS |
| TGTACTCTACTTGTTAGAAC+TGG | 0.344400 | 5_1:+6803260 | Msa0714170:three_prime_UTR |
| TGATTAACAGCTGTTGTGGC+TGG | 0.347745 | 5_1:-6802977 | None:intergenic |
| CTCATCTATCCATAATTTAT+CGG | 0.347797 | 5_1:-6799006 | None:intergenic |
| TGCTCAAATTTGTACTTTGA+TGG | 0.350401 | 5_1:-6801719 | None:intergenic |
| AGTTTGAAAACAAGCTAAAC+TGG | 0.389097 | 5_1:+6800513 | Msa0714170:CDS |
| AGAGCTTGGACTTGGATTGC+AGG | 0.389569 | 5_1:+6800973 | Msa0714170:CDS |
| ATAATTTATCGGCATTGTTA+AGG | 0.390095 | 5_1:-6798995 | None:intergenic |
| ATCTCTGTTCCGGTTATCTA+AGG | 0.390223 | 5_1:-6803286 | None:intergenic |
| AAGTCCAAGCTCTATGTTCC+TGG | 0.390461 | 5_1:-6800963 | None:intergenic |
| GGCTGGCAATCCTCATCATC+TGG | 0.399583 | 5_1:-6800446 | None:intergenic |
| AAGCTCTATGTTCCTGGCTT+CGG | 0.400967 | 5_1:-6800957 | None:intergenic |
| GAACAAAGACGAAGCATGTT+AGG | 0.401968 | 5_1:+6799156 | Msa0714170:CDS |
| ATCCAAGTGCTCTCATAACT+TGG | 0.404958 | 5_1:-6800898 | None:intergenic |
| AATAAAACGGTGAAGCTGTT+TGG | 0.409551 | 5_1:-6802900 | None:intergenic |
| ATGTATCCTCATCTCTGTTC+CGG | 0.413416 | 5_1:-6803296 | None:intergenic |
| CAACAAAGTATCAAACTGTT+TGG | 0.422950 | 5_1:-6799102 | None:intergenic |
| TGGCTGGGTTTCTCCGTCTC+CGG | 0.431775 | 5_1:-6802961 | None:intergenic |
| AAGACGAAGCATGTTAGGTC+TGG | 0.432221 | 5_1:+6799161 | Msa0714170:CDS |
| AGGAACATAGAGCTTGGACT+TGG | 0.433949 | 5_1:+6800965 | Msa0714170:CDS |
| ATTTAGATGCTCCTGGGTTG+TGG | 0.437257 | 5_1:+6802819 | Msa0714170:CDS |
| AACTGGGCTCCTTAGATAAC+CGG | 0.438291 | 5_1:+6803277 | Msa0714170:three_prime_UTR |
| ATGAAGCATTTAGATGCTCC+TGG | 0.439342 | 5_1:+6802812 | Msa0714170:CDS |
| AGAGAGTTTATGGGTTGATT+GGG | 0.442300 | 5_1:+6799285 | Msa0714170:CDS |
| TGAACCATCAGACACATTAG+AGG | 0.448502 | 5_1:+6799067 | Msa0714170:CDS |
| ACTCTCCATGGCTCAGATCA+TGG | 0.450343 | 5_1:+6803336 | Msa0714170:three_prime_UTR |
| GTAGACAAGAACTTAATAAT+GGG | 0.452131 | 5_1:-6798962 | None:intergenic |
| CCCCAAGTTATGAGAGCACT+TGG | 0.454535 | 5_1:+6800896 | Msa0714170:CDS |
| AAACCGCTTATGAGCGCAAC+CGG | 0.458052 | 5_1:+6802942 | Msa0714170:CDS |
| GGGGCAATATGTGCTGGAAT+TGG | 0.460146 | 5_1:+6799205 | Msa0714170:CDS |
| GTTGTTTGCGCTCCCTAGGC+TGG | 0.460379 | 5_1:-6800463 | None:intergenic |
| TCAAGTTGTTTGCGCTCCCT+AGG | 0.462470 | 5_1:-6800467 | None:intergenic |
| GTTTGAAGATTGAATTGTGC+TGG | 0.462819 | 5_1:-6798600 | None:intergenic |
| GGAAGGAGAATTTGCCTAAG+TGG | 0.464839 | 5_1:+6799306 | Msa0714170:CDS |
| AAAGTATCAAACTGTTTGGC+AGG | 0.468742 | 5_1:-6799098 | None:intergenic |
| AGATTAATGGGATTGATTTG+TGG | 0.469630 | 5_1:-6798537 | None:intergenic |
| CCTCTGAATCGATGCATGCC+AGG | 0.470072 | 5_1:-6800848 | None:intergenic |
| ACTGCTTGTTCTACTCTCCA+TGG | 0.470450 | 5_1:+6803324 | Msa0714170:three_prime_UTR |
| TTTGAGAGATTAGAATATGT+TGG | 0.474238 | 5_1:+6801755 | Msa0714170:CDS |
| GATTAACAGCTGTTGTGGCT+GGG | 0.475840 | 5_1:-6802976 | None:intergenic |
| CGATGAGGGAGAGAGTTTAT+GGG | 0.478368 | 5_1:+6799276 | Msa0714170:CDS |
| AAAATTAGAACTTACTTGAC+AGG | 0.483319 | 5_1:-6799407 | None:intergenic |
| ATCTTATCCATATTATCATA+AGG | 0.484697 | 5_1:-6799362 | None:intergenic |
| TCCAAGTGCTCTCATAACTT+GGG | 0.485073 | 5_1:-6800897 | None:intergenic |
| TTGGATGGGGAAAGGAGAGA+AGG | 0.485624 | 5_1:-6798691 | None:intergenic |
| TGAGCAGATTCAGCCTAAAG+AGG | 0.487808 | 5_1:+6803075 | Msa0714170:CDS |
| GATGGGGAAAGGAGAGAAGG+AGG | 0.489046 | 5_1:-6798688 | None:intergenic |
| ATTAAGATTTGGATGGGGAA+AGG | 0.504291 | 5_1:-6798699 | None:intergenic |
| TTTCTTGGGGCAATATGTGC+TGG | 0.507263 | 5_1:+6799199 | Msa0714170:CDS |
| CTCGTAGCGAAACAAGCGCT+TGG | 0.514904 | 5_1:+6799035 | Msa0714170:CDS |
| TATCATCATATATAATAAAA+CGG | 0.517957 | 5_1:-6802913 | None:intergenic |
| GTGCTGGGAAATGTTGATAG+TGG | 0.520234 | 5_1:-6798584 | None:intergenic |
| AAACTAAGTGGATCAAATCA+TGG | 0.520710 | 5_1:-6803187 | None:intergenic |
| AGTTTATGGGTTGATTGGGA+AGG | 0.522441 | 5_1:+6799289 | Msa0714170:CDS |
| GTCTTTGTTCTCTCACACGA+AGG | 0.525988 | 5_1:-6799143 | None:intergenic |
| GCTGTTAATCAAGCTATTCA+CGG | 0.527856 | 5_1:+6802989 | Msa0714170:CDS |
| TAGTGGAAAATAAAATTGGA+GGG | 0.528126 | 5_1:-6798567 | None:intergenic |
| AGACGAAGCATGTTAGGTCT+GGG | 0.530011 | 5_1:+6799162 | Msa0714170:CDS |
| CTCTGAATCGATGCATGCCA+GGG | 0.532007 | 5_1:-6800847 | None:intergenic |
| ACACATGCTCTAAACAGCCT+TGG | 0.533681 | 5_1:-6800821 | None:intergenic |
| CTTATGAGCGCAACCGGAGA+CGG | 0.533815 | 5_1:+6802948 | Msa0714170:CDS |
| TTCCAGAAATTACCGAAGCC+AGG | 0.536155 | 5_1:+6800945 | Msa0714170:CDS |
| TCGATTCAGAGGAAATATAT+GGG | 0.538733 | 5_1:+6800859 | Msa0714170:CDS |
| ATTGTAGATGAAGGGGTTTG+GGG | 0.542616 | 5_1:-6798494 | None:intergenic |
| ACTCTCTCCCTCATCGGACC+AGG | 0.543075 | 5_1:-6799269 | None:intergenic |
| ATGATGAGGATTGCCAGCCT+AGG | 0.543609 | 5_1:+6800450 | Msa0714170:CDS |
| TTTGAAGATTGAATTGTGCT+GGG | 0.545348 | 5_1:-6798599 | None:intergenic |
| TTGCTCCATGATCTGAGCCA+TGG | 0.546436 | 5_1:-6803341 | None:intergenic |
| AAGTGGATCAAATCATGGTA+AGG | 0.547895 | 5_1:-6803182 | None:intergenic |
| AGCTTGATTAACAGCTGTTG+TGG | 0.551231 | 5_1:-6802981 | None:intergenic |
| TGATGAGGATTGCCAGCCTA+GGG | 0.552339 | 5_1:+6800451 | Msa0714170:CDS |
| TTTAGAATGTAACGTCTTGG+TGG | 0.553258 | 5_1:-6798870 | None:intergenic |
| ATAGTGGAAAATAAAATTGG+AGG | 0.555100 | 5_1:-6798568 | None:intergenic |
| TGAGTAAACAGAGCATCTGC+AGG | 0.557301 | 5_1:-6800797 | None:intergenic |
| ATCGGACCAGGCAATTCCCT+CGG | 0.558254 | 5_1:-6799257 | None:intergenic |
| CCATAAACTCTCTCCCTCAT+CGG | 0.567145 | 5_1:-6799275 | None:intergenic |
| TCTCCGGTTGCGCTCATAAG+CGG | 0.572925 | 5_1:-6802945 | None:intergenic |
| TTCTCTTGCAGCCACAACCC+AGG | 0.573873 | 5_1:-6802830 | None:intergenic |
| ATATGTGCTGGAATTGGCAT+TGG | 0.575967 | 5_1:+6799211 | Msa0714170:CDS |
| GAAGCCAGGAACATAGAGCT+TGG | 0.576371 | 5_1:+6800959 | Msa0714170:CDS |
| TGTAACTGCGAGAACGTGAA+GGG | 0.579147 | 5_1:-6798748 | None:intergenic |
| GGTAAGGAAAACCAAGGGGA+TGG | 0.579225 | 5_1:-6803166 | None:intergenic |
| ACATGGCAATAGAGTACTCT+CGG | 0.579660 | 5_1:+6803119 | Msa0714170:three_prime_UTR |
| CCTGGCATGCATCGATTCAG+AGG | 0.580371 | 5_1:+6800848 | Msa0714170:CDS |
| ATGCTCTGTTTACTCATCCA+AGG | 0.580822 | 5_1:+6800804 | Msa0714170:CDS |
| GTACTCTACTTGTTAGAACT+GGG | 0.583609 | 5_1:+6803261 | Msa0714170:three_prime_UTR |
| GGAATTGCCTGGTCCGATGA+GGG | 0.585185 | 5_1:+6799262 | Msa0714170:CDS |
| CAATCTTCAAACAACTACAA+TGG | 0.585823 | 5_1:+6798611 | Msa0714170:exon |
| TGTAGATGAAGGGGTTTGGG+GGG | 0.589369 | 5_1:-6798492 | None:intergenic |
| CGGAATGGATCCAGATGATG+AGG | 0.590285 | 5_1:+6800436 | Msa0714170:CDS |
| GCGCAAACAACTTGAAGATG+TGG | 0.590741 | 5_1:+6800475 | Msa0714170:CDS |
| TGAAGCATTTAGATGCTCCT+GGG | 0.592431 | 5_1:+6802813 | Msa0714170:CDS |
| TCATCCTCTAATGTGTCTGA+TGG | 0.595112 | 5_1:-6799071 | None:intergenic |
| TTGTAGATGAAGGGGTTTGG+GGG | 0.604922 | 5_1:-6798493 | None:intergenic |
| AGGTATCCGAGGGAATTGCC+TGG | 0.610907 | 5_1:+6799251 | Msa0714170:CDS |
| CCAAGTGCTCTCATAACTTG+GGG | 0.611381 | 5_1:-6800896 | None:intergenic |
| ATCATGGTAAGGAAAACCAA+GGG | 0.611834 | 5_1:-6803171 | None:intergenic |
| CTCACACGAAGGATGCTGAA+AGG | 0.613808 | 5_1:-6799132 | None:intergenic |
| TTGTAACTGCGAGAACGTGA+AGG | 0.616613 | 5_1:-6798749 | None:intergenic |
| GGGAATTGCCTGGTCCGATG+AGG | 0.628852 | 5_1:+6799261 | Msa0714170:CDS |
| ATAATATGGATAAGATTGTG+AGG | 0.636146 | 5_1:+6799369 | Msa0714170:CDS |
| AGTGGAAAATAAAATTGGAG+GGG | 0.636810 | 5_1:-6798566 | None:intergenic |
| GCATTGTTAAGGCGCGACGA+AGG | 0.641980 | 5_1:-6798984 | None:intergenic |
| GTAAACAGAGCATCTGCAGG+AGG | 0.645297 | 5_1:-6800794 | None:intergenic |
| CTAGCAGCTTTAATCCACTT+AGG | 0.646479 | 5_1:-6799320 | None:intergenic |
| AATCTCTCAAAGCAAAATCG+AGG | 0.653019 | 5_1:-6801743 | None:intergenic |
| TCTGAATCGATGCATGCCAG+GGG | 0.656480 | 5_1:-6800846 | None:intergenic |
| AATCATGGTAAGGAAAACCA+AGG | 0.657108 | 5_1:-6803172 | None:intergenic |
| AGATAACCGGAACAGAGATG+AGG | 0.667397 | 5_1:+6803290 | Msa0714170:three_prime_UTR |
| GTAACTGCGAGAACGTGAAG+GGG | 0.674979 | 5_1:-6798747 | None:intergenic |
| AGTTCTTTAAGAAGTCGTTG+AGG | 0.689037 | 5_1:-6798807 | None:intergenic |
| ATTGTGAGGAGAGATAGAGA+AGG | 0.699451 | 5_1:+6799383 | Msa0714170:CDS |
| CTGAATCGATGCATGCCAGG+GGG | 0.708978 | 5_1:-6800845 | None:intergenic |
| TAACTGCGAGAACGTGAAGG+GGG | 0.713161 | 5_1:-6798746 | None:intergenic |
| TCATGGTAAGGAAAACCAAG+GGG | 0.715394 | 5_1:-6803170 | None:intergenic |
| AATATGAGACAAGAATGACA+TGG | 0.759010 | 5_1:+6803102 | Msa0714170:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTTGATATTATGT+TGG | + | chr5_1:6799449-6799468 | Msa0714170:intron | 10.0% |
| !! | AATTATGTTAATATTTGTAT+TGG | + | chr5_1:6799900-6799919 | Msa0714170:intron | 10.0% |
| !!! | TGTATTAATAGTTTAAAATT+AGG | + | chr5_1:6801482-6801501 | Msa0714170:intron | 10.0% |
| !! | TATCATCATATATAATAAAA+CGG | - | chr5_1:6802916-6802935 | None:intergenic | 10.0% |
| !! | ATTATTTGAAAATTCAATTT+GGG | + | chr5_1:6803395-6803414 | Msa0714170:three_prime_UTR | 10.0% |
| !!! | TGTTGTATTCTTTTTTTTTT+TGG | + | chr5_1:6800081-6800100 | Msa0714170:intron | 15.0% |
| !!! | TTTTTATTTTCTTAAGGATT+TGG | + | chr5_1:6802769-6802788 | Msa0714170:intron | 15.0% |
| !! | GATTATTTGAAAATTCAATT+TGG | + | chr5_1:6803394-6803413 | Msa0714170:three_prime_UTR | 15.0% |
| !!! | TTGATAGTGGAAAATAAAAT+TGG | - | chr5_1:6798574-6798593 | None:intergenic | 20.0% |
| !!! | TTTTTGATTAAGATTTGGAT+GGG | - | chr5_1:6798708-6798727 | None:intergenic | 20.0% |
| !! | GATATTTCCTTATGATAATA+TGG | + | chr5_1:6799355-6799374 | Msa0714170:CDS | 20.0% |
| !! | ATCTTATCCATATTATCATA+AGG | - | chr5_1:6799365-6799384 | None:intergenic | 20.0% |
| !! | TTCACATAATGAATGATATT+TGG | + | chr5_1:6799924-6799943 | Msa0714170:intron | 20.0% |
| !! | AAAGAATACAACAGATATAA+AGG | - | chr5_1:6800074-6800093 | None:intergenic | 20.0% |
| !!! | CAAGTTTACTTCTAAAAAAA+GGG | - | chr5_1:6801580-6801599 | None:intergenic | 20.0% |
| !!! | ACAAGTTTACTTCTAAAAAA+AGG | - | chr5_1:6801581-6801600 | None:intergenic | 20.0% |
| !!! | ACAACGTTTTTATTTTCTTA+AGG | + | chr5_1:6802763-6802782 | Msa0714170:intron | 20.0% |
| !! | TAAATAACCTAAAAACTAAG+TGG | - | chr5_1:6803202-6803221 | None:intergenic | 20.0% |
| !!! | TGATTTGTGGATTTTTGTAT+TGG | - | chr5_1:6798527-6798546 | None:intergenic | 25.0% |
| ! | TAGTGGAAAATAAAATTGGA+GGG | - | chr5_1:6798570-6798589 | None:intergenic | 25.0% |
| !! | ATAGTGGAAAATAAAATTGG+AGG | - | chr5_1:6798571-6798590 | None:intergenic | 25.0% |
| !!! | TTTTGATTAAGATTTGGATG+GGG | - | chr5_1:6798707-6798726 | None:intergenic | 25.0% |
| !!! | GTTTTTGATTAAGATTTGGA+TGG | - | chr5_1:6798709-6798728 | None:intergenic | 25.0% |
| !!! | TGGTGTTTTTGATTAAGATT+TGG | - | chr5_1:6798713-6798732 | None:intergenic | 25.0% |
| !!! | GTTGAGGATTGTTATTTTTA+GGG | - | chr5_1:6798794-6798813 | None:intergenic | 25.0% |
| ! | GTAGACAAGAACTTAATAAT+GGG | - | chr5_1:6798965-6798984 | None:intergenic | 25.0% |
| ! | ATAATTTATCGGCATTGTTA+AGG | - | chr5_1:6798998-6799017 | None:intergenic | 25.0% |
| ! | TTAACAATGCCGATAAATTA+TGG | + | chr5_1:6798997-6799016 | Msa0714170:CDS | 25.0% |
| ! | CTCATCTATCCATAATTTAT+CGG | - | chr5_1:6799009-6799028 | None:intergenic | 25.0% |
| !! | GTTTGATACTTTGTTGTATT+TGG | + | chr5_1:6799109-6799128 | Msa0714170:CDS | 25.0% |
| ! | ATAATATGGATAAGATTGTG+AGG | + | chr5_1:6799369-6799388 | Msa0714170:CDS | 25.0% |
| ! | AAAATTAGAACTTACTTGAC+AGG | - | chr5_1:6799410-6799429 | None:intergenic | 25.0% |
| ! | TCAATCAAACTTTACTATGT+AGG | + | chr5_1:6799552-6799571 | Msa0714170:intron | 25.0% |
| ! | TGAGAAGAATATAACTAACT+CGG | - | chr5_1:6799615-6799634 | None:intergenic | 25.0% |
| !!! | TGAATTGATTTGTTAGGATA+AGG | + | chr5_1:6799712-6799731 | Msa0714170:intron | 25.0% |
| ! | GTTTATATCACTATAACTCA+TGG | - | chr5_1:6800017-6800036 | None:intergenic | 25.0% |
| ! | CAAATTGATTAACAGCATAT+GGG | - | chr5_1:6800237-6800256 | None:intergenic | 25.0% |
| ! | ACAAATTGATTAACAGCATA+TGG | - | chr5_1:6800238-6800257 | None:intergenic | 25.0% |
| ! | AATATAGAACATTCGATTGT+AGG | - | chr5_1:6800740-6800759 | None:intergenic | 25.0% |
| ! | AAATGTGAAAGTAGAATGAA+AGG | - | chr5_1:6801013-6801032 | None:intergenic | 25.0% |
| ! | TTCTATTTATTATCCTTCTC+AGG | + | chr5_1:6801137-6801156 | Msa0714170:intron | 25.0% |
| !!! | TTGATAATTCTGTTTTTACC+CGG | + | chr5_1:6801314-6801333 | Msa0714170:intron | 25.0% |
| ! | ATTTACATAAACAGCTAAAC+CGG | - | chr5_1:6801336-6801355 | None:intergenic | 25.0% |
| !!! | TATTCACTTTTCTATTGAAG+TGG | + | chr5_1:6801613-6801632 | Msa0714170:intron | 25.0% |
| !!! | ATTCACTTTTCTATTGAAGT+GGG | + | chr5_1:6801614-6801633 | Msa0714170:intron | 25.0% |
| ! | TTTGAGAGATTAGAATATGT+TGG | + | chr5_1:6801755-6801774 | Msa0714170:CDS | 25.0% |
| ! | GAAGACTCTAATTTCATTAA+TGG | + | chr5_1:6801823-6801842 | Msa0714170:intron | 25.0% |
| ! | TTATCGCATTTCTGATAATA+GGG | - | chr5_1:6801873-6801892 | None:intergenic | 25.0% |
| ! | TTTATCGCATTTCTGATAAT+AGG | - | chr5_1:6801874-6801893 | None:intergenic | 25.0% |
| ! | ATCTTGAATAGAAAAAAGTG+AGG | + | chr5_1:6801917-6801936 | Msa0714170:intron | 25.0% |
| !! | CATTATTCTGAAAAATAGCT+TGG | + | chr5_1:6801982-6802001 | Msa0714170:intron | 25.0% |
| !!! | ATTTTTCACATCTAAGATCA+GGG | - | chr5_1:6802101-6802120 | None:intergenic | 25.0% |
| !!! | AATTTTTCACATCTAAGATC+AGG | - | chr5_1:6802102-6802121 | None:intergenic | 25.0% |
| !!! | CATGGAAGCTTTTTTTTTTT+TGG | - | chr5_1:6802141-6802160 | None:intergenic | 25.0% |
| ! | AATTGTTTGAAAGTTACTGA+AGG | + | chr5_1:6802308-6802327 | Msa0714170:intron | 25.0% |
| !!! | TTCTGAAATATAAACAAGAG+AGG | + | chr5_1:6802397-6802416 | Msa0714170:intron | 25.0% |
| ! | AAAAAAGATGATGCTAACAA+GGG | + | chr5_1:6802499-6802518 | Msa0714170:intron | 25.0% |
| !! | ATTCTTCTGAACAAATTTTG+TGG | + | chr5_1:6802863-6802882 | Msa0714170:CDS | 25.0% |
| !!! | ATTTGATCCACTTAGTTTTT+AGG | + | chr5_1:6803192-6803211 | Msa0714170:three_prime_UTR | 25.0% |
| ! | TTTTGACATTGTAGATGAAG+GGG | - | chr5_1:6798504-6798523 | None:intergenic | 30.0% |
| !! | GTTTTGACATTGTAGATGAA+GGG | - | chr5_1:6798505-6798524 | None:intergenic | 30.0% |
| !! | AGATTAATGGGATTGATTTG+TGG | - | chr5_1:6798540-6798559 | None:intergenic | 30.0% |
| AGTGGAAAATAAAATTGGAG+GGG | - | chr5_1:6798569-6798588 | None:intergenic | 30.0% | |
| TTTGAAGATTGAATTGTGCT+GGG | - | chr5_1:6798602-6798621 | None:intergenic | 30.0% | |
| CAATCTTCAAACAACTACAA+TGG | + | chr5_1:6798611-6798630 | Msa0714170:exon | 30.0% | |
| !!! | ATGAGAAGTTAGTTGGTTTT+GGG | - | chr5_1:6798662-6798681 | None:intergenic | 30.0% |
| !! | AATGAGAAGTTAGTTGGTTT+TGG | - | chr5_1:6798663-6798682 | None:intergenic | 30.0% |
| !! | TTTTAGGGAAGTCTTTTGTT+GGG | - | chr5_1:6798779-6798798 | None:intergenic | 30.0% |
| !! | TTTTTAGGGAAGTCTTTTGT+TGG | - | chr5_1:6798780-6798799 | None:intergenic | 30.0% |
| !!! | CGTTGAGGATTGTTATTTTT+AGG | - | chr5_1:6798795-6798814 | None:intergenic | 30.0% |
| !!! | TTGGTGGTGATTTTGATTTT+GGG | - | chr5_1:6798857-6798876 | None:intergenic | 30.0% |
| !! | AATGATTTTAATGAGAGCTG+TGG | - | chr5_1:6798942-6798961 | None:intergenic | 30.0% |
| GGTAGACAAGAACTTAATAA+TGG | - | chr5_1:6798966-6798985 | None:intergenic | 30.0% | |
| ! | CAACAAAGTATCAAACTGTT+TGG | - | chr5_1:6799105-6799124 | None:intergenic | 30.0% |
| !!! | CATTCTAGGTTGTTTTTCTT+GGG | + | chr5_1:6799185-6799204 | Msa0714170:CDS | 30.0% |
| !!! | ATTCTAGGTTGTTTTTCTTG+GGG | + | chr5_1:6799186-6799205 | Msa0714170:CDS | 30.0% |
| ACATTGCGTAGTTTATTTGA+TGG | + | chr5_1:6799634-6799653 | Msa0714170:intron | 30.0% | |
| CATTGCGTAGTTTATTTGAT+GGG | + | chr5_1:6799635-6799654 | Msa0714170:intron | 30.0% | |
| ATTGCGTAGTTTATTTGATG+GGG | + | chr5_1:6799636-6799655 | Msa0714170:intron | 30.0% | |
| TTAGTTAGATATCATGTGAC+CGG | + | chr5_1:6799659-6799678 | Msa0714170:intron | 30.0% | |
| GACATCAAATGATCATAAAC+CGG | - | chr5_1:6799681-6799700 | None:intergenic | 30.0% | |
| CCTAACAAATCAATTCAGTT+TGG | - | chr5_1:6799709-6799728 | None:intergenic | 30.0% | |
| !! | CCAAACTGAATTGATTTGTT+AGG | + | chr5_1:6799706-6799725 | Msa0714170:intron | 30.0% |
| ! | CATAAACTTAAAAGTGCACA+AGG | - | chr5_1:6799958-6799977 | None:intergenic | 30.0% |
| ! | TTTGTTGCTATCTCATTTTC+AGG | + | chr5_1:6800113-6800132 | Msa0714170:intron | 30.0% |
| ACCATCTTATATGATTGAGT+TGG | + | chr5_1:6800264-6800283 | Msa0714170:intron | 30.0% | |
| ACCAACTCAATCATATAAGA+TGG | - | chr5_1:6800268-6800287 | None:intergenic | 30.0% | |
| !! | CACATTTGTTATTCTATCGT+AGG | + | chr5_1:6800333-6800352 | Msa0714170:intron | 30.0% |
| !! | TTTGTTATTCTATCGTAGGT+CGG | + | chr5_1:6800337-6800356 | Msa0714170:intron | 30.0% |
| AGTTTGAAAACAAGCTAAAC+TGG | + | chr5_1:6800513-6800532 | Msa0714170:CDS | 30.0% | |
| ! | GCAAGATATTGTTGCTTATA+AGG | + | chr5_1:6800535-6800554 | Msa0714170:CDS | 30.0% |
| CAATCGAATGTTCTATATTG+AGG | + | chr5_1:6800741-6800760 | Msa0714170:intron | 30.0% | |
| ! | ATCGATTCAGAGGAAATATA+TGG | + | chr5_1:6800858-6800877 | Msa0714170:CDS | 30.0% |
| TCGATTCAGAGGAAATATAT+GGG | + | chr5_1:6800859-6800878 | Msa0714170:CDS | 30.0% | |
| ! | ATTCTGTCTGTCATTTCTAA+TGG | - | chr5_1:6800926-6800945 | None:intergenic | 30.0% |
| ! | AGATGTTTAGTGATAGTGAT+TGG | + | chr5_1:6801181-6801200 | Msa0714170:intron | 30.0% |
| !! | AAACTTGAAAGTATCACTGT+AGG | - | chr5_1:6801258-6801277 | None:intergenic | 30.0% |
| ! | CAAGTTTTTGTGTTGAATTC+AGG | + | chr5_1:6801271-6801290 | Msa0714170:intron | 30.0% |
| TTTACATAAACAGCTAAACC+GGG | - | chr5_1:6801335-6801354 | None:intergenic | 30.0% | |
| GGTTTAGCTGTTTATGTAAA+TGG | + | chr5_1:6801335-6801354 | Msa0714170:intron | 30.0% | |
| ! | GTTTATGTAATTTTCTCACC+TGG | + | chr5_1:6801357-6801376 | Msa0714170:intron | 30.0% |
| TGCTCAAATTTGTACTTTGA+TGG | - | chr5_1:6801722-6801741 | None:intergenic | 30.0% | |
| ATATGTTGGAAAAACGATAC+AGG | + | chr5_1:6801769-6801788 | Msa0714170:CDS | 30.0% | |
| ATTTCTGATAATAGGGAAAG+GGG | - | chr5_1:6801866-6801885 | None:intergenic | 30.0% | |
| CATTTCTGATAATAGGGAAA+GGG | - | chr5_1:6801867-6801886 | None:intergenic | 30.0% | |
| GGATAAAAATAGATTGCAAC+AGG | + | chr5_1:6802003-6802022 | Msa0714170:intron | 30.0% | |
| ! | TCTTTCTCTTAGGTTTTTCA+TGG | - | chr5_1:6802159-6802178 | None:intergenic | 30.0% |
| TGAAAAACCTAAGAGAAAGA+TGG | + | chr5_1:6802159-6802178 | Msa0714170:intron | 30.0% | |
| GAAAAACCTAAGAGAAAGAT+GGG | + | chr5_1:6802160-6802179 | Msa0714170:intron | 30.0% | |
| TGAAATATAAACAAGAGAGG+TGG | + | chr5_1:6802400-6802419 | Msa0714170:intron | 30.0% | |
| GAAATATAAACAAGAGAGGT+GGG | + | chr5_1:6802401-6802420 | Msa0714170:intron | 30.0% | |
| CAAAATCACAGACACATATT+AGG | - | chr5_1:6802469-6802488 | None:intergenic | 30.0% | |
| CAAAAAAGATGATGCTAACA+AGG | + | chr5_1:6802498-6802517 | Msa0714170:intron | 30.0% | |
| AAAAAGATGATGCTAACAAG+GGG | + | chr5_1:6802500-6802519 | Msa0714170:intron | 30.0% | |
| ! | TACAAATTTTGTGCTTCCAA+CGG | - | chr5_1:6802616-6802635 | None:intergenic | 30.0% |
| !!! | TTTTCTTAAGGATTTGGTGA+TGG | + | chr5_1:6802775-6802794 | Msa0714170:intron | 30.0% |
| ! | AATTTTGTGGAAGATACTTG+AGG | + | chr5_1:6802876-6802895 | Msa0714170:CDS | 30.0% |
| ! | ATTTTGTGGAAGATACTTGA+GGG | + | chr5_1:6802877-6802896 | Msa0714170:CDS | 30.0% |
| ! | GACTCTCATATCTTGTTTAT+GGG | + | chr5_1:6803011-6803030 | Msa0714170:CDS | 30.0% |
| TCTCATATTTAGACCTCTTT+AGG | - | chr5_1:6803091-6803110 | None:intergenic | 30.0% | |
| AATATGAGACAAGAATGACA+TGG | + | chr5_1:6803102-6803121 | Msa0714170:exon | 30.0% | |
| AAACTAAGTGGATCAAATCA+TGG | - | chr5_1:6803190-6803209 | None:intergenic | 30.0% | |
| !! | GGTTTTGACATTGTAGATGA+AGG | - | chr5_1:6798506-6798525 | None:intergenic | 35.0% |
| GTTTGAAGATTGAATTGTGC+TGG | - | chr5_1:6798603-6798622 | None:intergenic | 35.0% | |
| !!! | TGAGAAGTTAGTTGGTTTTG+GGG | - | chr5_1:6798661-6798680 | None:intergenic | 35.0% |
| GATGAGAATGAGAAGTTAGT+TGG | - | chr5_1:6798669-6798688 | None:intergenic | 35.0% | |
| ATTAAGATTTGGATGGGGAA+AGG | - | chr5_1:6798702-6798721 | None:intergenic | 35.0% | |
| ! | AGTTCTTTAAGAAGTCGTTG+AGG | - | chr5_1:6798810-6798829 | None:intergenic | 35.0% |
| !!! | CTTGGTGGTGATTTTGATTT+TGG | - | chr5_1:6798858-6798877 | None:intergenic | 35.0% |
| ! | TTTAGAATGTAACGTCTTGG+TGG | - | chr5_1:6798873-6798892 | None:intergenic | 35.0% |
| !!! | GGTTTTAGAATGTAACGTCT+TGG | - | chr5_1:6798876-6798895 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGTCATCTAGTGG+GGG | - | chr5_1:6798897-6798916 | None:intergenic | 35.0% |
| !!! | GAGTTTTTTGTCATCTAGTG+GGG | - | chr5_1:6798898-6798917 | None:intergenic | 35.0% |
| !!! | CGAGTTTTTTGTCATCTAGT+GGG | - | chr5_1:6798899-6798918 | None:intergenic | 35.0% |
| ! | AAAGTATCAAACTGTTTGGC+AGG | - | chr5_1:6799101-6799120 | None:intergenic | 35.0% |
| !!! | GCATTCTAGGTTGTTTTTCT+TGG | + | chr5_1:6799184-6799203 | Msa0714170:CDS | 35.0% |
| !! | AGAGAGTTTATGGGTTGATT+GGG | + | chr5_1:6799285-6799304 | Msa0714170:CDS | 35.0% |
| ! | AGTTTTCTGTCTATGTCTCT+TGG | + | chr5_1:6799803-6799822 | Msa0714170:intron | 35.0% |
| TGTCTATGTCTCTTGGTATT+TGG | + | chr5_1:6799810-6799829 | Msa0714170:intron | 35.0% | |
| ATAATGTGTGATATGTGCTC+AGG | + | chr5_1:6799848-6799867 | Msa0714170:intron | 35.0% | |
| TTACTGTCTAAACAGGACAT+AGG | + | chr5_1:6800179-6800198 | Msa0714170:intron | 35.0% | |
| CGAACACTTCAAAAAGAACA+CGG | - | chr5_1:6800418-6800437 | None:intergenic | 35.0% | |
| !!! | CGTGTTCTTTTTGAAGTGTT+CGG | + | chr5_1:6800416-6800435 | Msa0714170:CDS | 35.0% |
| !!! | TCTTTTTGAAGTGTTCGGAA+TGG | + | chr5_1:6800421-6800440 | Msa0714170:CDS | 35.0% |
| GTGCAGTTGCTCATAATAAA+TGG | - | chr5_1:6800623-6800642 | None:intergenic | 35.0% | |
| ! | ACTTTCACATTTTCCCTTTC+TGG | + | chr5_1:6801021-6801040 | Msa0714170:intron | 35.0% |
| ! | GTGCTTTAAATAGCCAGAAA+GGG | - | chr5_1:6801037-6801056 | None:intergenic | 35.0% |
| ! | TGTGCTTTAAATAGCCAGAA+AGG | - | chr5_1:6801038-6801057 | None:intergenic | 35.0% |
| ! | GGCTATTTAAAGCACAAATC+TGG | + | chr5_1:6801042-6801061 | Msa0714170:intron | 35.0% |
| ATTTAACATGAAGCCTGAGA+AGG | - | chr5_1:6801153-6801172 | None:intergenic | 35.0% | |
| ! | TTTAGTGATAGTGATTGGCA+AGG | + | chr5_1:6801186-6801205 | Msa0714170:intron | 35.0% |
| ! | TTAGTGATAGTGATTGGCAA+GGG | + | chr5_1:6801187-6801206 | Msa0714170:intron | 35.0% |
| TGGTTTAGCTGTTTAGCAAT+CGG | + | chr5_1:6801377-6801396 | Msa0714170:intron | 35.0% | |
| AAACTTGTCTAGTGCATATG+CGG | + | chr5_1:6801533-6801552 | Msa0714170:intron | 35.0% | |
| AATCTCTCAAAGCAAAATCG+AGG | - | chr5_1:6801746-6801765 | None:intergenic | 35.0% | |
| TTCGTTTGTGGAAATTCTTC+AGG | + | chr5_1:6801801-6801820 | Msa0714170:intron | 35.0% | |
| GCATTTCTGATAATAGGGAA+AGG | - | chr5_1:6801868-6801887 | None:intergenic | 35.0% | |
| GAATAGAAAAAAGTGAGGTG+AGG | + | chr5_1:6801922-6801941 | Msa0714170:intron | 35.0% | |
| CGGAATTTCCACTTAGATAT+GGG | + | chr5_1:6802195-6802214 | Msa0714170:intron | 35.0% | |
| ! | TTTTCATGCCCATATCTAAG+TGG | - | chr5_1:6802206-6802225 | None:intergenic | 35.0% |
| GAATAGCTGCAGTACAATTA+CGG | + | chr5_1:6802250-6802269 | Msa0714170:intron | 35.0% | |
| AATAGCTGCAGTACAATTAC+GGG | + | chr5_1:6802251-6802270 | Msa0714170:intron | 35.0% | |
| TTTGAAAGTTACTGAAGGTG+AGG | + | chr5_1:6802313-6802332 | Msa0714170:intron | 35.0% | |
| AATAAAACGGTGAAGCTGTT+TGG | - | chr5_1:6802903-6802922 | None:intergenic | 35.0% | |
| GCTGTTAATCAAGCTATTCA+CGG | + | chr5_1:6802989-6803008 | Msa0714170:CDS | 35.0% | |
| ! | GGACTCTCATATCTTGTTTA+TGG | + | chr5_1:6803010-6803029 | Msa0714170:CDS | 35.0% |
| CAAGGGGATGGAAAAATAAA+AGG | - | chr5_1:6803157-6803176 | None:intergenic | 35.0% | |
| !!! | CTTTTATTTTTCCATCCCCT+TGG | + | chr5_1:6803155-6803174 | Msa0714170:three_prime_UTR | 35.0% |
| ATCATGGTAAGGAAAACCAA+GGG | - | chr5_1:6803174-6803193 | None:intergenic | 35.0% | |
| AATCATGGTAAGGAAAACCA+AGG | - | chr5_1:6803175-6803194 | None:intergenic | 35.0% | |
| AAGTGGATCAAATCATGGTA+AGG | - | chr5_1:6803185-6803204 | None:intergenic | 35.0% | |
| ! | TGTACTCTACTTGTTAGAAC+TGG | + | chr5_1:6803260-6803279 | Msa0714170:three_prime_UTR | 35.0% |
| ! | GTACTCTACTTGTTAGAACT+GGG | + | chr5_1:6803261-6803280 | Msa0714170:three_prime_UTR | 35.0% |
| ATTGTAGATGAAGGGGTTTG+GGG | - | chr5_1:6798497-6798516 | None:intergenic | 40.0% | |
| CATTGTAGATGAAGGGGTTT+GGG | - | chr5_1:6798498-6798517 | None:intergenic | 40.0% | |
| ACATTGTAGATGAAGGGGTT+TGG | - | chr5_1:6798499-6798518 | None:intergenic | 40.0% | |
| GAGGGGTTGTGAAGATTAAT+GGG | - | chr5_1:6798552-6798571 | None:intergenic | 40.0% | |
| !! | TTTTGGGGAGAGTGAAAAAG+AGG | - | chr5_1:6798646-6798665 | None:intergenic | 40.0% |
| !!! | GCGAGTTTTTTGTCATCTAG+TGG | - | chr5_1:6798900-6798919 | None:intergenic | 40.0% |
| TGAACCATCAGACACATTAG+AGG | + | chr5_1:6799067-6799086 | Msa0714170:CDS | 40.0% | |
| TCATCCTCTAATGTGTCTGA+TGG | - | chr5_1:6799074-6799093 | None:intergenic | 40.0% | |
| GAACAAAGACGAAGCATGTT+AGG | + | chr5_1:6799156-6799175 | Msa0714170:CDS | 40.0% | |
| ATATGTGCTGGAATTGGCAT+TGG | + | chr5_1:6799211-6799230 | Msa0714170:CDS | 40.0% | |
| ! | TGGCTGAATTCTTTTTGCAG+AGG | + | chr5_1:6799231-6799250 | Msa0714170:CDS | 40.0% |
| !! | GAGAGAGTTTATGGGTTGAT+TGG | + | chr5_1:6799284-6799303 | Msa0714170:CDS | 40.0% |
| !! | AGTTTATGGGTTGATTGGGA+AGG | + | chr5_1:6799289-6799308 | Msa0714170:CDS | 40.0% |
| ! | CTAGCAGCTTTAATCCACTT+AGG | - | chr5_1:6799323-6799342 | None:intergenic | 40.0% |
| ATTGTGAGGAGAGATAGAGA+AGG | + | chr5_1:6799383-6799402 | Msa0714170:CDS | 40.0% | |
| ! | AGCTAGCTTACTGTCTAAAC+AGG | + | chr5_1:6800172-6800191 | Msa0714170:intron | 40.0% |
| ! | TCTATCGTAGGTCGGTATTT+TGG | + | chr5_1:6800345-6800364 | Msa0714170:intron | 40.0% |
| ! | CTATCGTAGGTCGGTATTTT+GGG | + | chr5_1:6800346-6800365 | Msa0714170:intron | 40.0% |
| !!! | TCGGTATTTTGGGCTTTGTT+TGG | + | chr5_1:6800356-6800375 | Msa0714170:CDS | 40.0% |
| !!! | CGGTATTTTGGGCTTTGTTT+GGG | + | chr5_1:6800357-6800376 | Msa0714170:CDS | 40.0% |
| !!! | GGTATTTTGGGCTTTGTTTG+GGG | + | chr5_1:6800358-6800377 | Msa0714170:CDS | 40.0% |
| !! | GGGGCAATCTATCTTTGTTT+TGG | + | chr5_1:6800377-6800396 | Msa0714170:CDS | 40.0% |
| AAAAGAACACGGTAGACTTC+TGG | - | chr5_1:6800407-6800426 | None:intergenic | 40.0% | |
| ATGCTCTGTTTACTCATCCA+AGG | + | chr5_1:6800804-6800823 | Msa0714170:CDS | 40.0% | |
| TCCAAGTGCTCTCATAACTT+GGG | - | chr5_1:6800900-6800919 | None:intergenic | 40.0% | |
| ATCCAAGTGCTCTCATAACT+TGG | - | chr5_1:6800901-6800920 | None:intergenic | 40.0% | |
| GTATCACTGTAGGTGTAACA+AGG | - | chr5_1:6801248-6801267 | None:intergenic | 40.0% | |
| GATTGCTAAACAGCTAAACC+AGG | - | chr5_1:6801378-6801397 | None:intergenic | 40.0% | |
| TCATGTAGTGAACTGCACAA+AGG | - | chr5_1:6801420-6801439 | None:intergenic | 40.0% | |
| !! | TGAGTTGAGAGGTTCTAAAG+CGG | - | chr5_1:6801453-6801472 | None:intergenic | 40.0% |
| !! | CACTTAGAACTTGAGTTGAG+AGG | - | chr5_1:6801464-6801483 | None:intergenic | 40.0% |
| AACTTGTCTAGTGCATATGC+GGG | + | chr5_1:6801534-6801553 | Msa0714170:intron | 40.0% | |
| ! | CTTCTAAAAAAAGGGCAACC+CGG | - | chr5_1:6801572-6801591 | None:intergenic | 40.0% |
| ! | AGGTACTGTTCTTTCGTTTG+TGG | + | chr5_1:6801789-6801808 | Msa0714170:intron | 40.0% |
| AAAAAAGTGAGGTGAGGAGA+CGG | + | chr5_1:6801928-6801947 | Msa0714170:intron | 40.0% | |
| AGATCAGGGTCAGGAAATAA+AGG | - | chr5_1:6802087-6802106 | None:intergenic | 40.0% | |
| GCGGAATTTCCACTTAGATA+TGG | + | chr5_1:6802194-6802213 | Msa0714170:intron | 40.0% | |
| TGCATCAAGCCTCAAAAACA+TGG | - | chr5_1:6802430-6802449 | None:intergenic | 40.0% | |
| ! | ATGAAGCATTTAGATGCTCC+TGG | + | chr5_1:6802812-6802831 | Msa0714170:CDS | 40.0% |
| ! | TGAAGCATTTAGATGCTCCT+GGG | + | chr5_1:6802813-6802832 | Msa0714170:CDS | 40.0% |
| AGCTTGATTAACAGCTGTTG+TGG | - | chr5_1:6802984-6803003 | None:intergenic | 40.0% | |
| ! | ACATGGCAATAGAGTACTCT+CGG | + | chr5_1:6803119-6803138 | Msa0714170:three_prime_UTR | 40.0% |
| TCATGGTAAGGAAAACCAAG+GGG | - | chr5_1:6803173-6803192 | None:intergenic | 40.0% | |
| ATCTCTGTTCCGGTTATCTA+AGG | - | chr5_1:6803289-6803308 | None:intergenic | 40.0% | |
| ATGTATCCTCATCTCTGTTC+CGG | - | chr5_1:6803299-6803318 | None:intergenic | 40.0% | |
| TTGTAGATGAAGGGGTTTGG+GGG | - | chr5_1:6798496-6798515 | None:intergenic | 45.0% | |
| GGAGGGGTTGTGAAGATTAA+TGG | - | chr5_1:6798553-6798572 | None:intergenic | 45.0% | |
| ! | GTGCTGGGAAATGTTGATAG+TGG | - | chr5_1:6798587-6798606 | None:intergenic | 45.0% |
| TGTAACTGCGAGAACGTGAA+GGG | - | chr5_1:6798751-6798770 | None:intergenic | 45.0% | |
| TTGTAACTGCGAGAACGTGA+AGG | - | chr5_1:6798752-6798771 | None:intergenic | 45.0% | |
| GTCTTTGTTCTCTCACACGA+AGG | - | chr5_1:6799146-6799165 | None:intergenic | 45.0% | |
| AAGACGAAGCATGTTAGGTC+TGG | + | chr5_1:6799161-6799180 | Msa0714170:CDS | 45.0% | |
| AGACGAAGCATGTTAGGTCT+GGG | + | chr5_1:6799162-6799181 | Msa0714170:CDS | 45.0% | |
| ATGTTAGGTCTGGGCATTCT+AGG | + | chr5_1:6799171-6799190 | Msa0714170:CDS | 45.0% | |
| TTTCTTGGGGCAATATGTGC+TGG | + | chr5_1:6799199-6799218 | Msa0714170:CDS | 45.0% | |
| !!! | TCTTTTTGCAGAGGTATCCG+AGG | + | chr5_1:6799240-6799259 | Msa0714170:CDS | 45.0% |
| !!! | CTTTTTGCAGAGGTATCCGA+GGG | + | chr5_1:6799241-6799260 | Msa0714170:CDS | 45.0% |
| CCATAAACTCTCTCCCTCAT+CGG | - | chr5_1:6799278-6799297 | None:intergenic | 45.0% | |
| CGATGAGGGAGAGAGTTTAT+GGG | + | chr5_1:6799276-6799295 | Msa0714170:CDS | 45.0% | |
| GGAAGGAGAATTTGCCTAAG+TGG | + | chr5_1:6799306-6799325 | Msa0714170:CDS | 45.0% | |
| GCGCAAACAACTTGAAGATG+TGG | + | chr5_1:6800475-6800494 | Msa0714170:CDS | 45.0% | |
| ! | TGAGTAAACAGAGCATCTGC+AGG | - | chr5_1:6800800-6800819 | None:intergenic | 45.0% |
| ! | ACACATGCTCTAAACAGCCT+TGG | - | chr5_1:6800824-6800843 | None:intergenic | 45.0% |
| CCAAGTGCTCTCATAACTTG+GGG | - | chr5_1:6800899-6800918 | None:intergenic | 45.0% | |
| TTCCAGAAATTACCGAAGCC+AGG | + | chr5_1:6800945-6800964 | Msa0714170:CDS | 45.0% | |
| TTCCTGGCTTCGGTAATTTC+TGG | - | chr5_1:6800950-6800969 | None:intergenic | 45.0% | |
| AAGCTCTATGTTCCTGGCTT+CGG | - | chr5_1:6800960-6800979 | None:intergenic | 45.0% | |
| AAGTCCAAGCTCTATGTTCC+TGG | - | chr5_1:6800966-6800985 | None:intergenic | 45.0% | |
| AGGAACATAGAGCTTGGACT+TGG | + | chr5_1:6800965-6800984 | Msa0714170:CDS | 45.0% | |
| GCAGAAAACAAAGCTGCAAG+TGG | - | chr5_1:6801697-6801716 | None:intergenic | 45.0% | |
| AAAAAGTGAGGTGAGGAGAC+GGG | + | chr5_1:6801929-6801948 | Msa0714170:intron | 45.0% | |
| ! | TCACATCTAAGATCAGGGTC+AGG | - | chr5_1:6802096-6802115 | None:intergenic | 45.0% |
| AACCTAAGAGAAAGATGGGC+AGG | + | chr5_1:6802164-6802183 | Msa0714170:intron | 45.0% | |
| ACCTAAGAGAAAGATGGGCA+GGG | + | chr5_1:6802165-6802184 | Msa0714170:intron | 45.0% | |
| AAGATGGGCAGGGAATTATG+CGG | + | chr5_1:6802175-6802194 | Msa0714170:intron | 45.0% | |
| CTGCAGTACAATTACGGGAA+GGG | + | chr5_1:6802256-6802275 | Msa0714170:intron | 45.0% | |
| CAATTACGGGAAGGGATGTT+TGG | + | chr5_1:6802264-6802283 | Msa0714170:intron | 45.0% | |
| ! | TGGTTTGAGACTTTGAGCTG+TGG | + | chr5_1:6802346-6802365 | Msa0714170:intron | 45.0% |
| ! | ATGATGCTAACAAGGGGCAT+CGG | + | chr5_1:6802506-6802525 | Msa0714170:intron | 45.0% |
| TATTACCGACGAGACAGAGA+AGG | + | chr5_1:6802659-6802678 | Msa0714170:intron | 45.0% | |
| ATTACCGACGAGACAGAGAA+GGG | + | chr5_1:6802660-6802679 | Msa0714170:intron | 45.0% | |
| ATTTAGATGCTCCTGGGTTG+TGG | + | chr5_1:6802819-6802838 | Msa0714170:CDS | 45.0% | |
| GATTAACAGCTGTTGTGGCT+GGG | - | chr5_1:6802979-6802998 | None:intergenic | 45.0% | |
| TGATTAACAGCTGTTGTGGC+TGG | - | chr5_1:6802980-6802999 | None:intergenic | 45.0% | |
| TGAGCAGATTCAGCCTAAAG+AGG | + | chr5_1:6803075-6803094 | Msa0714170:CDS | 45.0% | |
| AACTGGGCTCCTTAGATAAC+CGG | + | chr5_1:6803277-6803296 | Msa0714170:three_prime_UTR | 45.0% | |
| AGATAACCGGAACAGAGATG+AGG | + | chr5_1:6803290-6803309 | Msa0714170:three_prime_UTR | 45.0% | |
| ACTGCTTGTTCTACTCTCCA+TGG | + | chr5_1:6803324-6803343 | Msa0714170:three_prime_UTR | 45.0% | |
| !!! | GTGTTGCTGGGTTTTGGACA+GGG | - | chr5_1:6798469-6798488 | None:intergenic | 50.0% |
| !!! | TGTGTTGCTGGGTTTTGGAC+AGG | - | chr5_1:6798470-6798489 | None:intergenic | 50.0% |
| !! | GGGTTTGTGTTGCTGGGTTT+TGG | - | chr5_1:6798475-6798494 | None:intergenic | 50.0% |
| ! | TTTGGGGGGTTTGTGTTGCT+GGG | - | chr5_1:6798481-6798500 | None:intergenic | 50.0% |
| TGTAGATGAAGGGGTTTGGG+GGG | - | chr5_1:6798495-6798514 | None:intergenic | 50.0% | |
| TTGGATGGGGAAAGGAGAGA+AGG | - | chr5_1:6798694-6798713 | None:intergenic | 50.0% | |
| AAGGGGGTAGTTTCGGGATT+TGG | - | chr5_1:6798733-6798752 | None:intergenic | 50.0% | |
| AACGTGAAGGGGGTAGTTTC+GGG | - | chr5_1:6798739-6798758 | None:intergenic | 50.0% | |
| GAACGTGAAGGGGGTAGTTT+CGG | - | chr5_1:6798740-6798759 | None:intergenic | 50.0% | |
| TAACTGCGAGAACGTGAAGG+GGG | - | chr5_1:6798749-6798768 | None:intergenic | 50.0% | |
| GTAACTGCGAGAACGTGAAG+GGG | - | chr5_1:6798750-6798769 | None:intergenic | 50.0% | |
| CTCACACGAAGGATGCTGAA+AGG | - | chr5_1:6799135-6799154 | None:intergenic | 50.0% | |
| GGGGCAATATGTGCTGGAAT+TGG | + | chr5_1:6799205-6799224 | Msa0714170:CDS | 50.0% | |
| CCGATGAGGGAGAGAGTTTA+TGG | + | chr5_1:6799275-6799294 | Msa0714170:CDS | 50.0% | |
| GTGCTCAGGATGTTGAAGAC+TGG | + | chr5_1:6799862-6799881 | Msa0714170:intron | 50.0% | |
| CGGAATGGATCCAGATGATG+AGG | + | chr5_1:6800436-6800455 | Msa0714170:CDS | 50.0% | |
| ATGATGAGGATTGCCAGCCT+AGG | + | chr5_1:6800450-6800469 | Msa0714170:CDS | 50.0% | |
| TGATGAGGATTGCCAGCCTA+GGG | + | chr5_1:6800451-6800470 | Msa0714170:CDS | 50.0% | |
| ! | TCAAGTTGTTTGCGCTCCCT+AGG | - | chr5_1:6800470-6800489 | None:intergenic | 50.0% |
| ! | GTAAACAGAGCATCTGCAGG+AGG | - | chr5_1:6800797-6800816 | None:intergenic | 50.0% |
| ! | TTTAGAGCATGTGTTCCCCC+TGG | + | chr5_1:6800830-6800849 | Msa0714170:CDS | 50.0% |
| TCTGAATCGATGCATGCCAG+GGG | - | chr5_1:6800849-6800868 | None:intergenic | 50.0% | |
| CTCTGAATCGATGCATGCCA+GGG | - | chr5_1:6800850-6800869 | None:intergenic | 50.0% | |
| !! | CCCCAAGTTATGAGAGCACT+TGG | + | chr5_1:6800896-6800915 | Msa0714170:CDS | 50.0% |
| GAAGCCAGGAACATAGAGCT+TGG | + | chr5_1:6800959-6800978 | Msa0714170:CDS | 50.0% | |
| AGAGCTTGGACTTGGATTGC+AGG | + | chr5_1:6800973-6800992 | Msa0714170:CDS | 50.0% | |
| TGGCCTCTCTTGCTAGAGTA+CGG | + | chr5_1:6801062-6801081 | Msa0714170:intron | 50.0% | |
| AAAAGTGAGGTGAGGAGACG+GGG | + | chr5_1:6801930-6801949 | Msa0714170:intron | 50.0% | |
| TCCCTGCCCATCTTTCTCTT+AGG | - | chr5_1:6802169-6802188 | None:intergenic | 50.0% | |
| GCTGCAGTACAATTACGGGA+AGG | + | chr5_1:6802255-6802274 | Msa0714170:intron | 50.0% | |
| GTTACTGAAGGTGAGGCTTG+AGG | + | chr5_1:6802320-6802339 | Msa0714170:intron | 50.0% | |
| GAAGGTGAGGCTTGAGGTAT+TGG | + | chr5_1:6802326-6802345 | Msa0714170:intron | 50.0% | |
| !! | GGTGGGTGACCATGTTTTTG+AGG | + | chr5_1:6802418-6802437 | Msa0714170:intron | 50.0% |
| !! | TGATGCTAACAAGGGGCATC+GGG | + | chr5_1:6802507-6802526 | Msa0714170:intron | 50.0% |
| AAACCGCTTATGAGCGCAAC+CGG | + | chr5_1:6802942-6802961 | Msa0714170:CDS | 50.0% | |
| GGTAAGGAAAACCAAGGGGA+TGG | - | chr5_1:6803169-6803188 | None:intergenic | 50.0% | |
| ACTCTCCATGGCTCAGATCA+TGG | + | chr5_1:6803336-6803355 | Msa0714170:three_prime_UTR | 50.0% | |
| TTGCTCCATGATCTGAGCCA+TGG | - | chr5_1:6803344-6803363 | None:intergenic | 50.0% | |
| !!! | TGCTGGGTTTTGGACAGGGT+TGG | - | chr5_1:6798465-6798484 | None:intergenic | 55.0% |
| GTTTGGGGGGTTTGTGTTGC+TGG | - | chr5_1:6798482-6798501 | None:intergenic | 55.0% | |
| GATGGGGAAAGGAGAGAAGG+AGG | - | chr5_1:6798691-6798710 | None:intergenic | 55.0% | |
| GCATTGTTAAGGCGCGACGA+AGG | - | chr5_1:6798987-6799006 | None:intergenic | 55.0% | |
| CTCGTAGCGAAACAAGCGCT+TGG | + | chr5_1:6799035-6799054 | Msa0714170:CDS | 55.0% | |
| AGGTATCCGAGGGAATTGCC+TGG | + | chr5_1:6799251-6799270 | Msa0714170:CDS | 55.0% | |
| ATCGGACCAGGCAATTCCCT+CGG | - | chr5_1:6799260-6799279 | None:intergenic | 55.0% | |
| GGAATTGCCTGGTCCGATGA+GGG | + | chr5_1:6799262-6799281 | Msa0714170:CDS | 55.0% | |
| GGCTGGCAATCCTCATCATC+TGG | - | chr5_1:6800449-6800468 | None:intergenic | 55.0% | |
| CTGAATCGATGCATGCCAGG+GGG | - | chr5_1:6800848-6800867 | None:intergenic | 55.0% | |
| CCTCTGAATCGATGCATGCC+AGG | - | chr5_1:6800851-6800870 | None:intergenic | 55.0% | |
| !! | CCTGGCATGCATCGATTCAG+AGG | + | chr5_1:6800848-6800867 | Msa0714170:CDS | 55.0% |
| CAGCCGTACTCTAGCAAGAG+AGG | - | chr5_1:6801068-6801087 | None:intergenic | 55.0% | |
| CTTGATGCAGAGCGAGACAC+AGG | + | chr5_1:6802441-6802460 | Msa0714170:intron | 55.0% | |
| GTTTCGCCTTCCAGAAGCTC+GGG | - | chr5_1:6802583-6802602 | None:intergenic | 55.0% | |
| GGTTTCGCCTTCCAGAAGCT+CGG | - | chr5_1:6802584-6802603 | None:intergenic | 55.0% | |
| CGAAACCTTATGCGAGCCGT+TGG | + | chr5_1:6802597-6802616 | Msa0714170:intron | 55.0% | |
| TGCTTCCAACGGCTCGCATA+AGG | - | chr5_1:6802605-6802624 | None:intergenic | 55.0% | |
| CTGTCCCTTCTCTGTCTCGT+CGG | - | chr5_1:6802667-6802686 | None:intergenic | 55.0% | |
| TTCTCTTGCAGCCACAACCC+AGG | - | chr5_1:6802833-6802852 | None:intergenic | 55.0% | |
| TCTCCGGTTGCGCTCATAAG+CGG | - | chr5_1:6802948-6802967 | None:intergenic | 55.0% | |
| CTTATGAGCGCAACCGGAGA+CGG | + | chr5_1:6802948-6802967 | Msa0714170:CDS | 55.0% | |
| GGGAATTGCCTGGTCCGATG+AGG | + | chr5_1:6799261-6799280 | Msa0714170:CDS | 60.0% | |
| ACTCTCTCCCTCATCGGACC+AGG | - | chr5_1:6799272-6799291 | None:intergenic | 60.0% | |
| GTTGTTTGCGCTCCCTAGGC+TGG | - | chr5_1:6800466-6800485 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr5_1:6801550-6801569 | Msa0714170:intron | 60.0% |
| ! | GGCATCGGGACAGATGCTGA+GGG | + | chr5_1:6802521-6802540 | Msa0714170:intron | 60.0% |
| GCATCGGGACAGATGCTGAG+GGG | + | chr5_1:6802522-6802541 | Msa0714170:intron | 60.0% | |
| CATCGGGACAGATGCTGAGG+GGG | + | chr5_1:6802523-6802542 | Msa0714170:intron | 60.0% | |
| CTGAGTGTCTCCCGAGCTTC+TGG | + | chr5_1:6802570-6802589 | Msa0714170:intron | 60.0% | |
| GTGTCTCCCGAGCTTCTGGA+AGG | + | chr5_1:6802574-6802593 | Msa0714170:intron | 60.0% | |
| TGGCTGGGTTTCTCCGTCTC+CGG | - | chr5_1:6802964-6802983 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr5_1:6801551-6801570 | Msa0714170:intron | 65.0% |
| TGAGGTGAGGAGACGGGGAC+TGG | + | chr5_1:6801935-6801954 | Msa0714170:intron | 65.0% | |
| GAGGTGAGGAGACGGGGACT+GGG | + | chr5_1:6801936-6801955 | Msa0714170:intron | 65.0% | |
| GAGACGGGGACTGGGACTCA+TGG | + | chr5_1:6801944-6801963 | Msa0714170:intron | 65.0% | |
| !! | GGGCATCGGGACAGATGCTG+AGG | + | chr5_1:6802520-6802539 | Msa0714170:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 6798460 | 6803453 | 6798460 | ID=Msa0714170;Name=Msa0714170 |
| chr5_1 | mRNA | 6798460 | 6803453 | 6798460 | ID=Msa0714170-mRNA-1;Parent=Msa0714170;Name=Msa0714170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=170|0.75|0.8|1|1|1|5|351|539 |
| chr5_1 | exon | 6798460 | 6799414 | 6798460 | ID=Msa0714170-mRNA-1:exon:2825;Parent=Msa0714170-mRNA-1 |
| chr5_1 | exon | 6800355 | 6800583 | 6800355 | ID=Msa0714170-mRNA-1:exon:2826;Parent=Msa0714170-mRNA-1 |
| chr5_1 | exon | 6800794 | 6800994 | 6800794 | ID=Msa0714170-mRNA-1:exon:2827;Parent=Msa0714170-mRNA-1 |
| chr5_1 | exon | 6801704 | 6801790 | 6801704 | ID=Msa0714170-mRNA-1:exon:2828;Parent=Msa0714170-mRNA-1 |
| chr5_1 | exon | 6802785 | 6803453 | 6802785 | ID=Msa0714170-mRNA-1:exon:2829;Parent=Msa0714170-mRNA-1 |
| chr5_1 | five_prime_UTR | 6798460 | 6798629 | 6798460 | ID=Msa0714170-mRNA-1:five_prime_utr;Parent=Msa0714170-mRNA-1 |
| chr5_1 | CDS | 6798630 | 6799414 | 6798630 | ID=Msa0714170-mRNA-1:cds;Parent=Msa0714170-mRNA-1 |
| chr5_1 | CDS | 6800355 | 6800583 | 6800355 | ID=Msa0714170-mRNA-1:cds;Parent=Msa0714170-mRNA-1 |
| chr5_1 | CDS | 6800794 | 6800994 | 6800794 | ID=Msa0714170-mRNA-1:cds;Parent=Msa0714170-mRNA-1 |
| chr5_1 | CDS | 6801704 | 6801790 | 6801704 | ID=Msa0714170-mRNA-1:cds;Parent=Msa0714170-mRNA-1 |
| chr5_1 | CDS | 6802785 | 6803102 | 6802785 | ID=Msa0714170-mRNA-1:cds;Parent=Msa0714170-mRNA-1 |
| chr5_1 | three_prime_UTR | 6803103 | 6803453 | 6803103 | ID=Msa0714170-mRNA-1:three_prime_utr;Parent=Msa0714170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
