Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714030 | XP_003611626.2 | 96.660 | 539 | 9 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1068 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714030 | sp|Q9SZV0|RNC1_ARATH | 77.909 | 507 | 101 | 3 | 34 | 539 | 41 | 537 | 0.0 | 823 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714030 | G7K3W4 | 96.660 | 539 | 9 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1068 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026110 | Msa0714030 | 0.837788 | 4.226513e-57 | -8.615850e-47 |
Msa0073650 | Msa0714030 | 0.807775 | 4.286008e-50 | -8.615850e-47 |
Msa0639370 | Msa0714030 | 0.854762 | 9.917897e-62 | -8.615850e-47 |
Msa0682460 | Msa0714030 | 0.825313 | 5.017044e-54 | -8.615850e-47 |
Msa0714030 | Msa0714170 | 0.991786 | 1.561604e-189 | -8.615850e-47 |
Msa0714030 | Msa0756470 | 0.893406 | 6.476458e-75 | -8.615850e-47 |
Msa0714030 | Msa0819440 | 0.800659 | 1.298929e-48 | -8.615850e-47 |
Msa0714030 | Msa0835520 | 0.901677 | 2.104093e-78 | -8.615850e-47 |
Msa0714030 | Msa1033790 | 0.818467 | 1.930786e-52 | -8.615850e-47 |
Msa0714030 | Msa1035510 | 0.824260 | 8.887195e-54 | -8.615850e-47 |
Msa0714030 | Msa1075420 | 0.821600 | 3.703804e-53 | -8.615850e-47 |
Msa0714030 | Msa1116550 | 0.804449 | 2.148598e-49 | -8.615850e-47 |
Msa0714030 | Msa1118150 | 0.815429 | 9.288947e-52 | -8.615850e-47 |
Msa0714030 | Msa1163050 | 0.803558 | 3.291745e-49 | -8.615850e-47 |
Msa0714030 | Msa1177240 | 0.803824 | 2.898307e-49 | -8.615850e-47 |
Msa0714030 | Msa1272210 | 0.800773 | 1.231712e-48 | -8.615850e-47 |
Msa0714030 | Msa1281270 | 0.822368 | 2.458584e-53 | -8.615850e-47 |
Msa0714030 | Msa1309960 | 0.824952 | 6.107520e-54 | -8.615850e-47 |
Msa0714030 | Msa1320380 | 0.814667 | 1.370795e-51 | -8.615850e-47 |
Msa0714030 | Msa1388240 | 0.992533 | 7.301495e-194 | -8.615850e-47 |
Msa0121800 | Msa0714030 | 0.853164 | 2.864035e-61 | -8.615850e-47 |
Msa0166570 | Msa0714030 | 0.849222 | 3.714969e-60 | -8.615850e-47 |
Msa0171920 | Msa0714030 | 0.828599 | 8.220039e-55 | -8.615850e-47 |
Msa0464860 | Msa0714030 | 0.811823 | 5.772720e-51 | -8.615850e-47 |
Msa0481490 | Msa0714030 | 0.818743 | 1.671326e-52 | -8.615850e-47 |
Msa0295730 | Msa0714030 | 0.809220 | 2.107275e-50 | -8.615850e-47 |
Msa0583170 | Msa0714030 | 0.808510 | 2.988966e-50 | -8.615850e-47 |
Msa0583740 | Msa0714030 | 0.800579 | 1.348874e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714030 | MtrunA17_Chr5g0401461 | 95.918 | 539 | 9 | 1 | 1 | 539 | 1 | 526 | 0.0 | 1058 |
Msa0714030 | MtrunA17_Chr4g0053831 | 70.874 | 515 | 129 | 6 | 26 | 537 | 23 | 519 | 0.0 | 753 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714030 | AT4G37510.1 | 77.909 | 507 | 101 | 3 | 34 | 539 | 41 | 537 | 0.0 | 823 |
Msa0714030 | AT2G48121.2 | 75.325 | 77 | 19 | 0 | 463 | 539 | 1 | 77 | 4.47e-34 | 124 |
Msa0714030 | AT2G48121.1 | 75.000 | 56 | 14 | 0 | 484 | 539 | 20 | 75 | 4.91e-22 | 90.5 |
Find 142 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATCGTAGGTCGGTATTT+TGG | 0.109591 | 5_1:+6609099 | Msa0714030:intron |
GTTTGATACTTTGTTGTATT+TGG | 0.144675 | 5_1:+6607863 | Msa0714030:CDS |
GGACTCTCATATCTTGTTTA+TGG | 0.145537 | 5_1:+6611763 | Msa0714030:CDS |
AATGAGAAGTTAGTTGGTTT+TGG | 0.179441 | 5_1:-6607414 | None:intergenic |
GCAAGATATTGTTGCTTATA+AGG | 0.188751 | 5_1:+6609289 | Msa0714030:CDS |
CCGATGAGGGAGAGAGTTTA+TGG | 0.193361 | 5_1:+6608029 | Msa0714030:CDS |
GGAGGGGTTGTGAAGATTAA+TGG | 0.211332 | 5_1:-6607304 | None:intergenic |
TTCCTGGCTTCGGTAATTTC+TGG | 0.213137 | 5_1:-6609701 | None:intergenic |
GGGTTTGTGTTGCTGGGTTT+TGG | 0.218590 | 5_1:-6607226 | None:intergenic |
GATTATTTGAAAATTCAATT+TGG | 0.228145 | 5_1:+6612147 | Msa0714030:three_prime_UTR |
CATTGTAGATGAAGGGGTTT+GGG | 0.240337 | 5_1:-6607249 | None:intergenic |
GATATTTCCTTATGATAATA+TGG | 0.242859 | 5_1:+6608109 | Msa0714030:CDS |
TCTCATATTTAGACCTCTTT+AGG | 0.265901 | 5_1:-6611841 | None:intergenic |
GGGGCAATCTATCTTTGTTT+TGG | 0.268972 | 5_1:+6609131 | Msa0714030:CDS |
TTAACAATGCCGATAAATTA+TGG | 0.272123 | 5_1:+6607751 | Msa0714030:CDS |
TTGATAGTGGAAAATAAAAT+TGG | 0.288695 | 5_1:-6607325 | None:intergenic |
GACTCTCATATCTTGTTTAT+GGG | 0.294493 | 5_1:+6611764 | Msa0714030:CDS |
ATCGATTCAGAGGAAATATA+TGG | 0.308151 | 5_1:+6609612 | Msa0714030:CDS |
GATGAGAATGAGAAGTTAGT+TGG | 0.309923 | 5_1:-6607420 | None:intergenic |
ATGTTAGGTCTGGGCATTCT+AGG | 0.312555 | 5_1:+6607925 | Msa0714030:CDS |
AAAAGAACACGGTAGACTTC+TGG | 0.315797 | 5_1:-6609158 | None:intergenic |
ATTCTGTCTGTCATTTCTAA+TGG | 0.317291 | 5_1:-6609677 | None:intergenic |
ATTATTTGAAAATTCAATTT+GGG | 0.324240 | 5_1:+6612148 | Msa0714030:three_prime_UTR |
GAGGGGTTGTGAAGATTAAT+GGG | 0.325613 | 5_1:-6607303 | None:intergenic |
GGTAGACAAGAACTTAATAA+TGG | 0.332729 | 5_1:-6607717 | None:intergenic |
ACATTGTAGATGAAGGGGTT+TGG | 0.336926 | 5_1:-6607250 | None:intergenic |
GAGAGAGTTTATGGGTTGAT+TGG | 0.340372 | 5_1:+6608038 | Msa0714030:CDS |
TGTACTCTACTTGTTAGAAC+TGG | 0.344400 | 5_1:+6612013 | Msa0714030:three_prime_UTR |
TGATTAACAGCTGTTGTGGC+TGG | 0.347745 | 5_1:-6611730 | None:intergenic |
CTCATCTATCCATAATTTAT+CGG | 0.347797 | 5_1:-6607760 | None:intergenic |
TGCTCAAATTTGTACTTTGA+TGG | 0.350401 | 5_1:-6610472 | None:intergenic |
AGTTTGAAAACAAGCTAAAC+TGG | 0.389097 | 5_1:+6609267 | Msa0714030:CDS |
AGAGCTTGGACTTGGATTGC+AGG | 0.389569 | 5_1:+6609727 | Msa0714030:CDS |
ATAATTTATCGGCATTGTTA+AGG | 0.390095 | 5_1:-6607749 | None:intergenic |
ATCTCTGTTCCGGTTATCTA+AGG | 0.390223 | 5_1:-6612039 | None:intergenic |
AAGTCCAAGCTCTATGTTCC+TGG | 0.390461 | 5_1:-6609717 | None:intergenic |
GGCTGGCAATCCTCATCATC+TGG | 0.399583 | 5_1:-6609200 | None:intergenic |
AAGCTCTATGTTCCTGGCTT+CGG | 0.400967 | 5_1:-6609711 | None:intergenic |
GAACAAAGACGAAGCATGTT+AGG | 0.401968 | 5_1:+6607910 | Msa0714030:CDS |
ATCCAAGTGCTCTCATAACT+TGG | 0.404958 | 5_1:-6609652 | None:intergenic |
AATAAAACGGTGAAGCTGTT+TGG | 0.409551 | 5_1:-6611653 | None:intergenic |
ATGTATCCTCATCTCTGTTC+CGG | 0.413416 | 5_1:-6612049 | None:intergenic |
CAACAAAGTATCAAACTGTT+TGG | 0.422950 | 5_1:-6607856 | None:intergenic |
TGGCTGGGTTTCTCCGTCTC+CGG | 0.431775 | 5_1:-6611714 | None:intergenic |
AAGACGAAGCATGTTAGGTC+TGG | 0.432221 | 5_1:+6607915 | Msa0714030:CDS |
AGGAACATAGAGCTTGGACT+TGG | 0.433949 | 5_1:+6609719 | Msa0714030:CDS |
ATTTAGATGCTCCTGGGTTG+TGG | 0.437257 | 5_1:+6611572 | Msa0714030:CDS |
AACTGGGCTCCTTAGATAAC+CGG | 0.438291 | 5_1:+6612030 | Msa0714030:three_prime_UTR |
ATGAAGCATTTAGATGCTCC+TGG | 0.439342 | 5_1:+6611565 | Msa0714030:CDS |
AGAGAGTTTATGGGTTGATT+GGG | 0.442300 | 5_1:+6608039 | Msa0714030:CDS |
TGAACCATCAGACACATTAG+AGG | 0.448502 | 5_1:+6607821 | Msa0714030:CDS |
ACTCTCCATGGCTCAGATCA+TGG | 0.450343 | 5_1:+6612089 | Msa0714030:three_prime_UTR |
GTAGACAAGAACTTAATAAT+GGG | 0.452131 | 5_1:-6607716 | None:intergenic |
CCCCAAGTTATGAGAGCACT+TGG | 0.454535 | 5_1:+6609650 | Msa0714030:CDS |
AAACCGCTTATGAGCGCAAC+CGG | 0.458052 | 5_1:+6611695 | Msa0714030:CDS |
GGGGCAATATGTGCTGGAAT+TGG | 0.460146 | 5_1:+6607959 | Msa0714030:CDS |
GTTGTTTGCGCTCCCTAGGC+TGG | 0.460379 | 5_1:-6609217 | None:intergenic |
TCAAGTTGTTTGCGCTCCCT+AGG | 0.462470 | 5_1:-6609221 | None:intergenic |
GTTTGAAGATTGAATTGTGC+TGG | 0.462819 | 5_1:-6607354 | None:intergenic |
GGAAGGAGAATTTGCCTAAG+TGG | 0.464839 | 5_1:+6608060 | Msa0714030:CDS |
AAAGTATCAAACTGTTTGGC+AGG | 0.468742 | 5_1:-6607852 | None:intergenic |
AGATTAATGGGATTGATTTG+TGG | 0.469630 | 5_1:-6607291 | None:intergenic |
CCTCTGAATCGATGCATGCC+AGG | 0.470072 | 5_1:-6609602 | None:intergenic |
ACTGCTTGTTCTACTCTCCA+TGG | 0.470450 | 5_1:+6612077 | Msa0714030:three_prime_UTR |
TTTGAGAGATTAGAATATGT+TGG | 0.474238 | 5_1:+6610508 | Msa0714030:CDS |
GATTAACAGCTGTTGTGGCT+GGG | 0.475840 | 5_1:-6611729 | None:intergenic |
CGATGAGGGAGAGAGTTTAT+GGG | 0.478368 | 5_1:+6608030 | Msa0714030:CDS |
AAAATTAGAACTTACTTGAC+AGG | 0.483319 | 5_1:-6608161 | None:intergenic |
ATCTTATCCATATTATCATA+AGG | 0.484697 | 5_1:-6608116 | None:intergenic |
TCCAAGTGCTCTCATAACTT+GGG | 0.485073 | 5_1:-6609651 | None:intergenic |
TTGGATGGGGAAAGGAGAGA+AGG | 0.485624 | 5_1:-6607445 | None:intergenic |
TGAGCAGATTCAGCCTAAAG+AGG | 0.487808 | 5_1:+6611828 | Msa0714030:CDS |
GATGGGGAAAGGAGAGAAGG+AGG | 0.489046 | 5_1:-6607442 | None:intergenic |
ATTAAGATTTGGATGGGGAA+AGG | 0.504291 | 5_1:-6607453 | None:intergenic |
TTTCTTGGGGCAATATGTGC+TGG | 0.507263 | 5_1:+6607953 | Msa0714030:CDS |
CTCGTAGCGAAACAAGCGCT+TGG | 0.514904 | 5_1:+6607789 | Msa0714030:CDS |
TATCATCATATATAATAAAA+CGG | 0.517957 | 5_1:-6611666 | None:intergenic |
GTGCTGGGAAATGTTGATAG+TGG | 0.520234 | 5_1:-6607338 | None:intergenic |
AAACTAAGTGGATCAAATCA+TGG | 0.520710 | 5_1:-6611940 | None:intergenic |
AGTTTATGGGTTGATTGGGA+AGG | 0.522441 | 5_1:+6608043 | Msa0714030:CDS |
GTCTTTGTTCTCTCACACGA+AGG | 0.525988 | 5_1:-6607897 | None:intergenic |
GCTGTTAATCAAGCTATTCA+CGG | 0.527856 | 5_1:+6611742 | Msa0714030:CDS |
TAGTGGAAAATAAAATTGGA+GGG | 0.528126 | 5_1:-6607321 | None:intergenic |
AGACGAAGCATGTTAGGTCT+GGG | 0.530011 | 5_1:+6607916 | Msa0714030:CDS |
CTCTGAATCGATGCATGCCA+GGG | 0.532007 | 5_1:-6609601 | None:intergenic |
ACACATGCTCTAAACAGCCT+TGG | 0.533681 | 5_1:-6609575 | None:intergenic |
CTTATGAGCGCAACCGGAGA+CGG | 0.533815 | 5_1:+6611701 | Msa0714030:CDS |
TTCCAGAAATTACCGAAGCC+AGG | 0.536155 | 5_1:+6609699 | Msa0714030:CDS |
TCGATTCAGAGGAAATATAT+GGG | 0.538733 | 5_1:+6609613 | Msa0714030:CDS |
ATTGTAGATGAAGGGGTTTG+GGG | 0.542616 | 5_1:-6607248 | None:intergenic |
ACTCTCTCCCTCATCGGACC+AGG | 0.543075 | 5_1:-6608023 | None:intergenic |
ATGATGAGGATTGCCAGCCT+AGG | 0.543609 | 5_1:+6609204 | Msa0714030:CDS |
TTTGAAGATTGAATTGTGCT+GGG | 0.545348 | 5_1:-6607353 | None:intergenic |
TTGCTCCATGATCTGAGCCA+TGG | 0.546436 | 5_1:-6612094 | None:intergenic |
AAGTGGATCAAATCATGGTA+AGG | 0.547895 | 5_1:-6611935 | None:intergenic |
AGCTTGATTAACAGCTGTTG+TGG | 0.551231 | 5_1:-6611734 | None:intergenic |
TGATGAGGATTGCCAGCCTA+GGG | 0.552339 | 5_1:+6609205 | Msa0714030:CDS |
TTTAGAATGTAACGTCTTGG+TGG | 0.553258 | 5_1:-6607624 | None:intergenic |
ATAGTGGAAAATAAAATTGG+AGG | 0.555100 | 5_1:-6607322 | None:intergenic |
TGAGTAAACAGAGCATCTGC+AGG | 0.557301 | 5_1:-6609551 | None:intergenic |
ATCGGACCAGGCAATTCCCT+CGG | 0.558254 | 5_1:-6608011 | None:intergenic |
CCATAAACTCTCTCCCTCAT+CGG | 0.567145 | 5_1:-6608029 | None:intergenic |
TCTCCGGTTGCGCTCATAAG+CGG | 0.572925 | 5_1:-6611698 | None:intergenic |
TTCTCTTGCAGCCACAACCC+AGG | 0.573873 | 5_1:-6611583 | None:intergenic |
ATATGTGCTGGAATTGGCAT+TGG | 0.575967 | 5_1:+6607965 | Msa0714030:CDS |
GAAGCCAGGAACATAGAGCT+TGG | 0.576371 | 5_1:+6609713 | Msa0714030:CDS |
TGTAACTGCGAGAACGTGAA+GGG | 0.579147 | 5_1:-6607502 | None:intergenic |
GGTAAGGAAAACCAAGGGGA+TGG | 0.579225 | 5_1:-6611919 | None:intergenic |
ACATGGCAATAGAGTACTCT+CGG | 0.579660 | 5_1:+6611872 | Msa0714030:three_prime_UTR |
CCTGGCATGCATCGATTCAG+AGG | 0.580371 | 5_1:+6609602 | Msa0714030:CDS |
ATGCTCTGTTTACTCATCCA+AGG | 0.580822 | 5_1:+6609558 | Msa0714030:CDS |
GTACTCTACTTGTTAGAACT+GGG | 0.583609 | 5_1:+6612014 | Msa0714030:three_prime_UTR |
GGAATTGCCTGGTCCGATGA+GGG | 0.585185 | 5_1:+6608016 | Msa0714030:CDS |
CAATCTTCAAACAACTACAA+TGG | 0.585823 | 5_1:+6607365 | Msa0714030:exon |
TGTAGATGAAGGGGTTTGGG+GGG | 0.589369 | 5_1:-6607246 | None:intergenic |
CGGAATGGATCCAGATGATG+AGG | 0.590285 | 5_1:+6609190 | Msa0714030:CDS |
GCGCAAACAACTTGAAGATG+TGG | 0.590741 | 5_1:+6609229 | Msa0714030:CDS |
TGAAGCATTTAGATGCTCCT+GGG | 0.592431 | 5_1:+6611566 | Msa0714030:CDS |
TCATCCTCTAATGTGTCTGA+TGG | 0.595112 | 5_1:-6607825 | None:intergenic |
TTGTAGATGAAGGGGTTTGG+GGG | 0.604922 | 5_1:-6607247 | None:intergenic |
AGGTATCCGAGGGAATTGCC+TGG | 0.610907 | 5_1:+6608005 | Msa0714030:CDS |
CCAAGTGCTCTCATAACTTG+GGG | 0.611381 | 5_1:-6609650 | None:intergenic |
ATCATGGTAAGGAAAACCAA+GGG | 0.611834 | 5_1:-6611924 | None:intergenic |
CTCACACGAAGGATGCTGAA+AGG | 0.613808 | 5_1:-6607886 | None:intergenic |
TTGTAACTGCGAGAACGTGA+AGG | 0.616613 | 5_1:-6607503 | None:intergenic |
GGGAATTGCCTGGTCCGATG+AGG | 0.628852 | 5_1:+6608015 | Msa0714030:CDS |
ATAATATGGATAAGATTGTG+AGG | 0.636146 | 5_1:+6608123 | Msa0714030:CDS |
AGTGGAAAATAAAATTGGAG+GGG | 0.636810 | 5_1:-6607320 | None:intergenic |
GCATTGTTAAGGCGCGACGA+AGG | 0.641980 | 5_1:-6607738 | None:intergenic |
GTAAACAGAGCATCTGCAGG+AGG | 0.645297 | 5_1:-6609548 | None:intergenic |
CTAGCAGCTTTAATCCACTT+AGG | 0.646479 | 5_1:-6608074 | None:intergenic |
AATCTCTCAAAGCAAAATCG+AGG | 0.653019 | 5_1:-6610496 | None:intergenic |
TCTGAATCGATGCATGCCAG+GGG | 0.656480 | 5_1:-6609600 | None:intergenic |
AATCATGGTAAGGAAAACCA+AGG | 0.657108 | 5_1:-6611925 | None:intergenic |
AGATAACCGGAACAGAGATG+AGG | 0.667397 | 5_1:+6612043 | Msa0714030:three_prime_UTR |
GTAACTGCGAGAACGTGAAG+GGG | 0.674979 | 5_1:-6607501 | None:intergenic |
AGTTCTTTAAGAAGTCGTTG+AGG | 0.689037 | 5_1:-6607561 | None:intergenic |
ATTGTGAGGAGAGATAGAGA+AGG | 0.699451 | 5_1:+6608137 | Msa0714030:CDS |
CTGAATCGATGCATGCCAGG+GGG | 0.708978 | 5_1:-6609599 | None:intergenic |
TAACTGCGAGAACGTGAAGG+GGG | 0.713161 | 5_1:-6607500 | None:intergenic |
TCATGGTAAGGAAAACCAAG+GGG | 0.715394 | 5_1:-6611923 | None:intergenic |
AATATGAGACAAGAATGACA+TGG | 0.759010 | 5_1:+6611855 | Msa0714030:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATAATTTTGATATTATGT+TGG | + | chr5_1:6608203-6608222 | Msa0714030:intron | 10.0% |
!! | AATTATGTTAATATTTGTAT+TGG | + | chr5_1:6608654-6608673 | Msa0714030:intron | 10.0% |
!!! | TGTATTAATAGTTTAAAATT+AGG | + | chr5_1:6610235-6610254 | Msa0714030:intron | 10.0% |
!! | TATCATCATATATAATAAAA+CGG | - | chr5_1:6611669-6611688 | None:intergenic | 10.0% |
!! | ATTATTTGAAAATTCAATTT+GGG | + | chr5_1:6612148-6612167 | Msa0714030:three_prime_UTR | 10.0% |
!!! | TGTTGTATTCTTTTTTTTTT+TGG | + | chr5_1:6608835-6608854 | Msa0714030:intron | 15.0% |
!!! | TTTTTATTTTCTTAAGGATT+TGG | + | chr5_1:6611522-6611541 | Msa0714030:intron | 15.0% |
!! | GATTATTTGAAAATTCAATT+TGG | + | chr5_1:6612147-6612166 | Msa0714030:three_prime_UTR | 15.0% |
!!! | TTGATAGTGGAAAATAAAAT+TGG | - | chr5_1:6607328-6607347 | None:intergenic | 20.0% |
!!! | TTTTTGATTAAGATTTGGAT+GGG | - | chr5_1:6607462-6607481 | None:intergenic | 20.0% |
!! | GATATTTCCTTATGATAATA+TGG | + | chr5_1:6608109-6608128 | Msa0714030:CDS | 20.0% |
!! | ATCTTATCCATATTATCATA+AGG | - | chr5_1:6608119-6608138 | None:intergenic | 20.0% |
!! | TTCACATAATGAATGATATT+TGG | + | chr5_1:6608678-6608697 | Msa0714030:intron | 20.0% |
!! | AAAGAATACAACAGATATAA+AGG | - | chr5_1:6608828-6608847 | None:intergenic | 20.0% |
!!! | CAAGTTTACTTCTAAAAAAA+GGG | - | chr5_1:6610333-6610352 | None:intergenic | 20.0% |
!!! | ACAAGTTTACTTCTAAAAAA+AGG | - | chr5_1:6610334-6610353 | None:intergenic | 20.0% |
!!! | ACAACGTTTTTATTTTCTTA+AGG | + | chr5_1:6611516-6611535 | Msa0714030:intron | 20.0% |
!! | TAAATAACCTAAAAACTAAG+TGG | - | chr5_1:6611955-6611974 | None:intergenic | 20.0% |
!!! | TGATTTGTGGATTTTTGTAT+TGG | - | chr5_1:6607281-6607300 | None:intergenic | 25.0% |
! | TAGTGGAAAATAAAATTGGA+GGG | - | chr5_1:6607324-6607343 | None:intergenic | 25.0% |
!! | ATAGTGGAAAATAAAATTGG+AGG | - | chr5_1:6607325-6607344 | None:intergenic | 25.0% |
!!! | TTTTGATTAAGATTTGGATG+GGG | - | chr5_1:6607461-6607480 | None:intergenic | 25.0% |
!!! | GTTTTTGATTAAGATTTGGA+TGG | - | chr5_1:6607463-6607482 | None:intergenic | 25.0% |
!!! | TGGTGTTTTTGATTAAGATT+TGG | - | chr5_1:6607467-6607486 | None:intergenic | 25.0% |
!!! | GTTGAGGATTGTTATTTTTA+GGG | - | chr5_1:6607548-6607567 | None:intergenic | 25.0% |
! | GTAGACAAGAACTTAATAAT+GGG | - | chr5_1:6607719-6607738 | None:intergenic | 25.0% |
! | ATAATTTATCGGCATTGTTA+AGG | - | chr5_1:6607752-6607771 | None:intergenic | 25.0% |
! | TTAACAATGCCGATAAATTA+TGG | + | chr5_1:6607751-6607770 | Msa0714030:CDS | 25.0% |
! | CTCATCTATCCATAATTTAT+CGG | - | chr5_1:6607763-6607782 | None:intergenic | 25.0% |
!! | GTTTGATACTTTGTTGTATT+TGG | + | chr5_1:6607863-6607882 | Msa0714030:CDS | 25.0% |
! | ATAATATGGATAAGATTGTG+AGG | + | chr5_1:6608123-6608142 | Msa0714030:CDS | 25.0% |
! | AAAATTAGAACTTACTTGAC+AGG | - | chr5_1:6608164-6608183 | None:intergenic | 25.0% |
! | TCAATCAAACTTTACTATGT+AGG | + | chr5_1:6608306-6608325 | Msa0714030:intron | 25.0% |
! | TGAGAAGAATATAACTAACT+CGG | - | chr5_1:6608369-6608388 | None:intergenic | 25.0% |
!!! | TGAATTGATTTGTTAGGATA+AGG | + | chr5_1:6608466-6608485 | Msa0714030:intron | 25.0% |
! | GTTTATATCACTATAACTCA+TGG | - | chr5_1:6608771-6608790 | None:intergenic | 25.0% |
! | CAAATTGATTAACAGCATAT+GGG | - | chr5_1:6608991-6609010 | None:intergenic | 25.0% |
! | ACAAATTGATTAACAGCATA+TGG | - | chr5_1:6608992-6609011 | None:intergenic | 25.0% |
! | AATATAGAACATTCGATTGT+AGG | - | chr5_1:6609494-6609513 | None:intergenic | 25.0% |
! | AAATGTGAAAGTAGAATGAA+AGG | - | chr5_1:6609767-6609786 | None:intergenic | 25.0% |
! | TTCTATTTATTATCCTTCTC+AGG | + | chr5_1:6609891-6609910 | Msa0714030:intron | 25.0% |
!!! | TTGATAATTCTGTTTTTACC+CGG | + | chr5_1:6610068-6610087 | Msa0714030:intron | 25.0% |
! | ATTTACATAAACAGCTAAAC+CGG | - | chr5_1:6610090-6610109 | None:intergenic | 25.0% |
!!! | TATTCACTTTTCTATTGAAG+TGG | + | chr5_1:6610366-6610385 | Msa0714030:intron | 25.0% |
!!! | ATTCACTTTTCTATTGAAGT+GGG | + | chr5_1:6610367-6610386 | Msa0714030:intron | 25.0% |
! | TTTGAGAGATTAGAATATGT+TGG | + | chr5_1:6610508-6610527 | Msa0714030:CDS | 25.0% |
! | GAAGACTCTAATTTCATTAA+TGG | + | chr5_1:6610576-6610595 | Msa0714030:intron | 25.0% |
! | TTATCGCATTTCTGATAATA+GGG | - | chr5_1:6610626-6610645 | None:intergenic | 25.0% |
! | TTTATCGCATTTCTGATAAT+AGG | - | chr5_1:6610627-6610646 | None:intergenic | 25.0% |
! | ATCTTGAATAGAAAAAAGTG+AGG | + | chr5_1:6610670-6610689 | Msa0714030:intron | 25.0% |
!! | CATTATTCTGAAAAATAGCT+TGG | + | chr5_1:6610735-6610754 | Msa0714030:intron | 25.0% |
!!! | ATTTTTCACATCTAAGATCA+GGG | - | chr5_1:6610854-6610873 | None:intergenic | 25.0% |
!!! | AATTTTTCACATCTAAGATC+AGG | - | chr5_1:6610855-6610874 | None:intergenic | 25.0% |
!!! | CATGGAAGCTTTTTTTTTTT+TGG | - | chr5_1:6610894-6610913 | None:intergenic | 25.0% |
! | AATTGTTTGAAAGTTACTGA+AGG | + | chr5_1:6611061-6611080 | Msa0714030:intron | 25.0% |
!!! | TTCTGAAATATAAACAAGAG+AGG | + | chr5_1:6611150-6611169 | Msa0714030:intron | 25.0% |
! | AAAAAAGATGATGCTAACAA+GGG | + | chr5_1:6611252-6611271 | Msa0714030:intron | 25.0% |
!! | ATTCTTCTGAACAAATTTTG+TGG | + | chr5_1:6611616-6611635 | Msa0714030:CDS | 25.0% |
!!! | ATTTGATCCACTTAGTTTTT+AGG | + | chr5_1:6611945-6611964 | Msa0714030:three_prime_UTR | 25.0% |
! | TTTTGACATTGTAGATGAAG+GGG | - | chr5_1:6607258-6607277 | None:intergenic | 30.0% |
!! | GTTTTGACATTGTAGATGAA+GGG | - | chr5_1:6607259-6607278 | None:intergenic | 30.0% |
!! | AGATTAATGGGATTGATTTG+TGG | - | chr5_1:6607294-6607313 | None:intergenic | 30.0% |
AGTGGAAAATAAAATTGGAG+GGG | - | chr5_1:6607323-6607342 | None:intergenic | 30.0% | |
TTTGAAGATTGAATTGTGCT+GGG | - | chr5_1:6607356-6607375 | None:intergenic | 30.0% | |
CAATCTTCAAACAACTACAA+TGG | + | chr5_1:6607365-6607384 | Msa0714030:exon | 30.0% | |
!!! | ATGAGAAGTTAGTTGGTTTT+GGG | - | chr5_1:6607416-6607435 | None:intergenic | 30.0% |
!! | AATGAGAAGTTAGTTGGTTT+TGG | - | chr5_1:6607417-6607436 | None:intergenic | 30.0% |
!! | TTTTAGGGAAGTCTTTTGTT+GGG | - | chr5_1:6607533-6607552 | None:intergenic | 30.0% |
!! | TTTTTAGGGAAGTCTTTTGT+TGG | - | chr5_1:6607534-6607553 | None:intergenic | 30.0% |
!!! | CGTTGAGGATTGTTATTTTT+AGG | - | chr5_1:6607549-6607568 | None:intergenic | 30.0% |
!!! | TTGGTGGTGATTTTGATTTT+GGG | - | chr5_1:6607611-6607630 | None:intergenic | 30.0% |
!! | AATGATTTTAATGAGAGCTG+TGG | - | chr5_1:6607696-6607715 | None:intergenic | 30.0% |
GGTAGACAAGAACTTAATAA+TGG | - | chr5_1:6607720-6607739 | None:intergenic | 30.0% | |
! | CAACAAAGTATCAAACTGTT+TGG | - | chr5_1:6607859-6607878 | None:intergenic | 30.0% |
!!! | CATTCTAGGTTGTTTTTCTT+GGG | + | chr5_1:6607939-6607958 | Msa0714030:CDS | 30.0% |
!!! | ATTCTAGGTTGTTTTTCTTG+GGG | + | chr5_1:6607940-6607959 | Msa0714030:CDS | 30.0% |
ACATTGCGTAGTTTATTTGA+TGG | + | chr5_1:6608388-6608407 | Msa0714030:intron | 30.0% | |
CATTGCGTAGTTTATTTGAT+GGG | + | chr5_1:6608389-6608408 | Msa0714030:intron | 30.0% | |
ATTGCGTAGTTTATTTGATG+GGG | + | chr5_1:6608390-6608409 | Msa0714030:intron | 30.0% | |
TTAGTTAGATATCATGTGAC+CGG | + | chr5_1:6608413-6608432 | Msa0714030:intron | 30.0% | |
GACATCAAATGATCATAAAC+CGG | - | chr5_1:6608435-6608454 | None:intergenic | 30.0% | |
CCTAACAAATCAATTCAGTT+TGG | - | chr5_1:6608463-6608482 | None:intergenic | 30.0% | |
!! | CCAAACTGAATTGATTTGTT+AGG | + | chr5_1:6608460-6608479 | Msa0714030:intron | 30.0% |
! | CATAAACTTAAAAGTGCACA+AGG | - | chr5_1:6608712-6608731 | None:intergenic | 30.0% |
! | TTTGTTGCTATCTCATTTTC+AGG | + | chr5_1:6608867-6608886 | Msa0714030:intron | 30.0% |
ACCATCTTATATGATTGAGT+TGG | + | chr5_1:6609018-6609037 | Msa0714030:intron | 30.0% | |
ACCAACTCAATCATATAAGA+TGG | - | chr5_1:6609022-6609041 | None:intergenic | 30.0% | |
!! | CACATTTGTTATTCTATCGT+AGG | + | chr5_1:6609087-6609106 | Msa0714030:intron | 30.0% |
!! | TTTGTTATTCTATCGTAGGT+CGG | + | chr5_1:6609091-6609110 | Msa0714030:intron | 30.0% |
AGTTTGAAAACAAGCTAAAC+TGG | + | chr5_1:6609267-6609286 | Msa0714030:CDS | 30.0% | |
! | GCAAGATATTGTTGCTTATA+AGG | + | chr5_1:6609289-6609308 | Msa0714030:CDS | 30.0% |
CAATCGAATGTTCTATATTG+AGG | + | chr5_1:6609495-6609514 | Msa0714030:intron | 30.0% | |
! | ATCGATTCAGAGGAAATATA+TGG | + | chr5_1:6609612-6609631 | Msa0714030:CDS | 30.0% |
TCGATTCAGAGGAAATATAT+GGG | + | chr5_1:6609613-6609632 | Msa0714030:CDS | 30.0% | |
! | ATTCTGTCTGTCATTTCTAA+TGG | - | chr5_1:6609680-6609699 | None:intergenic | 30.0% |
! | AGATGTTTAGTGATAGTGAT+TGG | + | chr5_1:6609935-6609954 | Msa0714030:intron | 30.0% |
!! | AAACTTGAAAGTATCACTGT+AGG | - | chr5_1:6610012-6610031 | None:intergenic | 30.0% |
! | CAAGTTTTTGTGTTGAATTC+AGG | + | chr5_1:6610025-6610044 | Msa0714030:intron | 30.0% |
TTTACATAAACAGCTAAACC+GGG | - | chr5_1:6610089-6610108 | None:intergenic | 30.0% | |
GGTTTAGCTGTTTATGTAAA+TGG | + | chr5_1:6610089-6610108 | Msa0714030:intron | 30.0% | |
! | GTTTATGTAATTTTCTCACC+TGG | + | chr5_1:6610111-6610130 | Msa0714030:intron | 30.0% |
TGCTCAAATTTGTACTTTGA+TGG | - | chr5_1:6610475-6610494 | None:intergenic | 30.0% | |
ATATGTTGGAAAAACGATAC+AGG | + | chr5_1:6610522-6610541 | Msa0714030:CDS | 30.0% | |
ATTTCTGATAATAGGGAAAG+GGG | - | chr5_1:6610619-6610638 | None:intergenic | 30.0% | |
CATTTCTGATAATAGGGAAA+GGG | - | chr5_1:6610620-6610639 | None:intergenic | 30.0% | |
GGATAAAAATAGATTGCAAC+AGG | + | chr5_1:6610756-6610775 | Msa0714030:intron | 30.0% | |
! | TCTTTCTCTTAGGTTTTTCA+TGG | - | chr5_1:6610912-6610931 | None:intergenic | 30.0% |
TGAAAAACCTAAGAGAAAGA+TGG | + | chr5_1:6610912-6610931 | Msa0714030:intron | 30.0% | |
GAAAAACCTAAGAGAAAGAT+GGG | + | chr5_1:6610913-6610932 | Msa0714030:intron | 30.0% | |
TGAAATATAAACAAGAGAGG+TGG | + | chr5_1:6611153-6611172 | Msa0714030:intron | 30.0% | |
GAAATATAAACAAGAGAGGT+GGG | + | chr5_1:6611154-6611173 | Msa0714030:intron | 30.0% | |
CAAAATCACAGACACATATT+AGG | - | chr5_1:6611222-6611241 | None:intergenic | 30.0% | |
CAAAAAAGATGATGCTAACA+AGG | + | chr5_1:6611251-6611270 | Msa0714030:intron | 30.0% | |
AAAAAGATGATGCTAACAAG+GGG | + | chr5_1:6611253-6611272 | Msa0714030:intron | 30.0% | |
! | TACAAATTTTGTGCTTCCAA+CGG | - | chr5_1:6611369-6611388 | None:intergenic | 30.0% |
!!! | TTTTCTTAAGGATTTGGTGA+TGG | + | chr5_1:6611528-6611547 | Msa0714030:intron | 30.0% |
! | AATTTTGTGGAAGATACTTG+AGG | + | chr5_1:6611629-6611648 | Msa0714030:CDS | 30.0% |
! | ATTTTGTGGAAGATACTTGA+GGG | + | chr5_1:6611630-6611649 | Msa0714030:CDS | 30.0% |
! | GACTCTCATATCTTGTTTAT+GGG | + | chr5_1:6611764-6611783 | Msa0714030:CDS | 30.0% |
TCTCATATTTAGACCTCTTT+AGG | - | chr5_1:6611844-6611863 | None:intergenic | 30.0% | |
AATATGAGACAAGAATGACA+TGG | + | chr5_1:6611855-6611874 | Msa0714030:exon | 30.0% | |
AAACTAAGTGGATCAAATCA+TGG | - | chr5_1:6611943-6611962 | None:intergenic | 30.0% | |
!! | GGTTTTGACATTGTAGATGA+AGG | - | chr5_1:6607260-6607279 | None:intergenic | 35.0% |
GTTTGAAGATTGAATTGTGC+TGG | - | chr5_1:6607357-6607376 | None:intergenic | 35.0% | |
!!! | TGAGAAGTTAGTTGGTTTTG+GGG | - | chr5_1:6607415-6607434 | None:intergenic | 35.0% |
GATGAGAATGAGAAGTTAGT+TGG | - | chr5_1:6607423-6607442 | None:intergenic | 35.0% | |
ATTAAGATTTGGATGGGGAA+AGG | - | chr5_1:6607456-6607475 | None:intergenic | 35.0% | |
! | AGTTCTTTAAGAAGTCGTTG+AGG | - | chr5_1:6607564-6607583 | None:intergenic | 35.0% |
!!! | CTTGGTGGTGATTTTGATTT+TGG | - | chr5_1:6607612-6607631 | None:intergenic | 35.0% |
! | TTTAGAATGTAACGTCTTGG+TGG | - | chr5_1:6607627-6607646 | None:intergenic | 35.0% |
!!! | GGTTTTAGAATGTAACGTCT+TGG | - | chr5_1:6607630-6607649 | None:intergenic | 35.0% |
!!! | AGTTTTTTGTCATCTAGTGG+GGG | - | chr5_1:6607651-6607670 | None:intergenic | 35.0% |
!!! | GAGTTTTTTGTCATCTAGTG+GGG | - | chr5_1:6607652-6607671 | None:intergenic | 35.0% |
!!! | CGAGTTTTTTGTCATCTAGT+GGG | - | chr5_1:6607653-6607672 | None:intergenic | 35.0% |
! | AAAGTATCAAACTGTTTGGC+AGG | - | chr5_1:6607855-6607874 | None:intergenic | 35.0% |
!!! | GCATTCTAGGTTGTTTTTCT+TGG | + | chr5_1:6607938-6607957 | Msa0714030:CDS | 35.0% |
!! | AGAGAGTTTATGGGTTGATT+GGG | + | chr5_1:6608039-6608058 | Msa0714030:CDS | 35.0% |
! | AGTTTTCTGTCTATGTCTCT+TGG | + | chr5_1:6608557-6608576 | Msa0714030:intron | 35.0% |
TGTCTATGTCTCTTGGTATT+TGG | + | chr5_1:6608564-6608583 | Msa0714030:intron | 35.0% | |
ATAATGTGTGATATGTGCTC+AGG | + | chr5_1:6608602-6608621 | Msa0714030:intron | 35.0% | |
TTACTGTCTAAACAGGACAT+AGG | + | chr5_1:6608933-6608952 | Msa0714030:intron | 35.0% | |
CGAACACTTCAAAAAGAACA+CGG | - | chr5_1:6609172-6609191 | None:intergenic | 35.0% | |
!!! | CGTGTTCTTTTTGAAGTGTT+CGG | + | chr5_1:6609170-6609189 | Msa0714030:CDS | 35.0% |
!!! | TCTTTTTGAAGTGTTCGGAA+TGG | + | chr5_1:6609175-6609194 | Msa0714030:CDS | 35.0% |
GTGCAGTTGCTCATAATAAA+TGG | - | chr5_1:6609377-6609396 | None:intergenic | 35.0% | |
! | ACTTTCACATTTTCCCTTTC+TGG | + | chr5_1:6609775-6609794 | Msa0714030:intron | 35.0% |
! | GTGCTTTAAATAGCCAGAAA+GGG | - | chr5_1:6609791-6609810 | None:intergenic | 35.0% |
! | TGTGCTTTAAATAGCCAGAA+AGG | - | chr5_1:6609792-6609811 | None:intergenic | 35.0% |
! | GGCTATTTAAAGCACAAATC+TGG | + | chr5_1:6609796-6609815 | Msa0714030:intron | 35.0% |
ATTTAACATGAAGCCTGAGA+AGG | - | chr5_1:6609907-6609926 | None:intergenic | 35.0% | |
! | TTTAGTGATAGTGATTGGCA+AGG | + | chr5_1:6609940-6609959 | Msa0714030:intron | 35.0% |
! | TTAGTGATAGTGATTGGCAA+GGG | + | chr5_1:6609941-6609960 | Msa0714030:intron | 35.0% |
TGGTTTAGCTGTTTAGCAAT+CGG | + | chr5_1:6610131-6610150 | Msa0714030:intron | 35.0% | |
AAACTTGTCTAGTGCATATG+CGG | + | chr5_1:6610286-6610305 | Msa0714030:intron | 35.0% | |
AATCTCTCAAAGCAAAATCG+AGG | - | chr5_1:6610499-6610518 | None:intergenic | 35.0% | |
TTCGTTTGTGGAAATTCTTC+AGG | + | chr5_1:6610554-6610573 | Msa0714030:intron | 35.0% | |
GCATTTCTGATAATAGGGAA+AGG | - | chr5_1:6610621-6610640 | None:intergenic | 35.0% | |
GAATAGAAAAAAGTGAGGTG+AGG | + | chr5_1:6610675-6610694 | Msa0714030:intron | 35.0% | |
CGGAATTTCCACTTAGATAT+GGG | + | chr5_1:6610948-6610967 | Msa0714030:intron | 35.0% | |
! | TTTTCATGCCCATATCTAAG+TGG | - | chr5_1:6610959-6610978 | None:intergenic | 35.0% |
GAATAGCTGCAGTACAATTA+CGG | + | chr5_1:6611003-6611022 | Msa0714030:intron | 35.0% | |
AATAGCTGCAGTACAATTAC+GGG | + | chr5_1:6611004-6611023 | Msa0714030:intron | 35.0% | |
TTTGAAAGTTACTGAAGGTG+AGG | + | chr5_1:6611066-6611085 | Msa0714030:intron | 35.0% | |
AATAAAACGGTGAAGCTGTT+TGG | - | chr5_1:6611656-6611675 | None:intergenic | 35.0% | |
GCTGTTAATCAAGCTATTCA+CGG | + | chr5_1:6611742-6611761 | Msa0714030:CDS | 35.0% | |
! | GGACTCTCATATCTTGTTTA+TGG | + | chr5_1:6611763-6611782 | Msa0714030:CDS | 35.0% |
CAAGGGGATGGAAAAATAAA+AGG | - | chr5_1:6611910-6611929 | None:intergenic | 35.0% | |
!!! | CTTTTATTTTTCCATCCCCT+TGG | + | chr5_1:6611908-6611927 | Msa0714030:three_prime_UTR | 35.0% |
ATCATGGTAAGGAAAACCAA+GGG | - | chr5_1:6611927-6611946 | None:intergenic | 35.0% | |
AATCATGGTAAGGAAAACCA+AGG | - | chr5_1:6611928-6611947 | None:intergenic | 35.0% | |
AAGTGGATCAAATCATGGTA+AGG | - | chr5_1:6611938-6611957 | None:intergenic | 35.0% | |
! | TGTACTCTACTTGTTAGAAC+TGG | + | chr5_1:6612013-6612032 | Msa0714030:three_prime_UTR | 35.0% |
! | GTACTCTACTTGTTAGAACT+GGG | + | chr5_1:6612014-6612033 | Msa0714030:three_prime_UTR | 35.0% |
ATTGTAGATGAAGGGGTTTG+GGG | - | chr5_1:6607251-6607270 | None:intergenic | 40.0% | |
CATTGTAGATGAAGGGGTTT+GGG | - | chr5_1:6607252-6607271 | None:intergenic | 40.0% | |
ACATTGTAGATGAAGGGGTT+TGG | - | chr5_1:6607253-6607272 | None:intergenic | 40.0% | |
GAGGGGTTGTGAAGATTAAT+GGG | - | chr5_1:6607306-6607325 | None:intergenic | 40.0% | |
!! | TTTTGGGGAGAGTGAAAAAG+AGG | - | chr5_1:6607400-6607419 | None:intergenic | 40.0% |
!!! | GCGAGTTTTTTGTCATCTAG+TGG | - | chr5_1:6607654-6607673 | None:intergenic | 40.0% |
TGAACCATCAGACACATTAG+AGG | + | chr5_1:6607821-6607840 | Msa0714030:CDS | 40.0% | |
TCATCCTCTAATGTGTCTGA+TGG | - | chr5_1:6607828-6607847 | None:intergenic | 40.0% | |
GAACAAAGACGAAGCATGTT+AGG | + | chr5_1:6607910-6607929 | Msa0714030:CDS | 40.0% | |
ATATGTGCTGGAATTGGCAT+TGG | + | chr5_1:6607965-6607984 | Msa0714030:CDS | 40.0% | |
! | TGGCTGAATTCTTTTTGCAG+AGG | + | chr5_1:6607985-6608004 | Msa0714030:CDS | 40.0% |
!! | GAGAGAGTTTATGGGTTGAT+TGG | + | chr5_1:6608038-6608057 | Msa0714030:CDS | 40.0% |
!! | AGTTTATGGGTTGATTGGGA+AGG | + | chr5_1:6608043-6608062 | Msa0714030:CDS | 40.0% |
! | CTAGCAGCTTTAATCCACTT+AGG | - | chr5_1:6608077-6608096 | None:intergenic | 40.0% |
ATTGTGAGGAGAGATAGAGA+AGG | + | chr5_1:6608137-6608156 | Msa0714030:CDS | 40.0% | |
! | AGCTAGCTTACTGTCTAAAC+AGG | + | chr5_1:6608926-6608945 | Msa0714030:intron | 40.0% |
! | TCTATCGTAGGTCGGTATTT+TGG | + | chr5_1:6609099-6609118 | Msa0714030:intron | 40.0% |
! | CTATCGTAGGTCGGTATTTT+GGG | + | chr5_1:6609100-6609119 | Msa0714030:intron | 40.0% |
!!! | TCGGTATTTTGGGCTTTGTT+TGG | + | chr5_1:6609110-6609129 | Msa0714030:CDS | 40.0% |
!!! | CGGTATTTTGGGCTTTGTTT+GGG | + | chr5_1:6609111-6609130 | Msa0714030:CDS | 40.0% |
!!! | GGTATTTTGGGCTTTGTTTG+GGG | + | chr5_1:6609112-6609131 | Msa0714030:CDS | 40.0% |
!! | GGGGCAATCTATCTTTGTTT+TGG | + | chr5_1:6609131-6609150 | Msa0714030:CDS | 40.0% |
AAAAGAACACGGTAGACTTC+TGG | - | chr5_1:6609161-6609180 | None:intergenic | 40.0% | |
ATGCTCTGTTTACTCATCCA+AGG | + | chr5_1:6609558-6609577 | Msa0714030:CDS | 40.0% | |
TCCAAGTGCTCTCATAACTT+GGG | - | chr5_1:6609654-6609673 | None:intergenic | 40.0% | |
ATCCAAGTGCTCTCATAACT+TGG | - | chr5_1:6609655-6609674 | None:intergenic | 40.0% | |
GTATCACTGTAGGTGTAACA+AGG | - | chr5_1:6610002-6610021 | None:intergenic | 40.0% | |
GATTGCTAAACAGCTAAACC+AGG | - | chr5_1:6610132-6610151 | None:intergenic | 40.0% | |
TCATGTAGTGAACTGCACAA+AGG | - | chr5_1:6610173-6610192 | None:intergenic | 40.0% | |
!! | TGAGTTGAGAGGTTCTAAAG+CGG | - | chr5_1:6610206-6610225 | None:intergenic | 40.0% |
!! | CACTTAGAACTTGAGTTGAG+AGG | - | chr5_1:6610217-6610236 | None:intergenic | 40.0% |
AACTTGTCTAGTGCATATGC+GGG | + | chr5_1:6610287-6610306 | Msa0714030:intron | 40.0% | |
! | CTTCTAAAAAAAGGGCAACC+CGG | - | chr5_1:6610325-6610344 | None:intergenic | 40.0% |
! | AGGTACTGTTCTTTCGTTTG+TGG | + | chr5_1:6610542-6610561 | Msa0714030:intron | 40.0% |
AAAAAAGTGAGGTGAGGAGA+CGG | + | chr5_1:6610681-6610700 | Msa0714030:intron | 40.0% | |
AGATCAGGGTCAGGAAATAA+AGG | - | chr5_1:6610840-6610859 | None:intergenic | 40.0% | |
GCGGAATTTCCACTTAGATA+TGG | + | chr5_1:6610947-6610966 | Msa0714030:intron | 40.0% | |
TGCATCAAGCCTCAAAAACA+TGG | - | chr5_1:6611183-6611202 | None:intergenic | 40.0% | |
! | ATGAAGCATTTAGATGCTCC+TGG | + | chr5_1:6611565-6611584 | Msa0714030:CDS | 40.0% |
! | TGAAGCATTTAGATGCTCCT+GGG | + | chr5_1:6611566-6611585 | Msa0714030:CDS | 40.0% |
AGCTTGATTAACAGCTGTTG+TGG | - | chr5_1:6611737-6611756 | None:intergenic | 40.0% | |
! | ACATGGCAATAGAGTACTCT+CGG | + | chr5_1:6611872-6611891 | Msa0714030:three_prime_UTR | 40.0% |
TCATGGTAAGGAAAACCAAG+GGG | - | chr5_1:6611926-6611945 | None:intergenic | 40.0% | |
ATCTCTGTTCCGGTTATCTA+AGG | - | chr5_1:6612042-6612061 | None:intergenic | 40.0% | |
ATGTATCCTCATCTCTGTTC+CGG | - | chr5_1:6612052-6612071 | None:intergenic | 40.0% | |
TTGTAGATGAAGGGGTTTGG+GGG | - | chr5_1:6607250-6607269 | None:intergenic | 45.0% | |
GGAGGGGTTGTGAAGATTAA+TGG | - | chr5_1:6607307-6607326 | None:intergenic | 45.0% | |
! | GTGCTGGGAAATGTTGATAG+TGG | - | chr5_1:6607341-6607360 | None:intergenic | 45.0% |
TGTAACTGCGAGAACGTGAA+GGG | - | chr5_1:6607505-6607524 | None:intergenic | 45.0% | |
TTGTAACTGCGAGAACGTGA+AGG | - | chr5_1:6607506-6607525 | None:intergenic | 45.0% | |
GTCTTTGTTCTCTCACACGA+AGG | - | chr5_1:6607900-6607919 | None:intergenic | 45.0% | |
AAGACGAAGCATGTTAGGTC+TGG | + | chr5_1:6607915-6607934 | Msa0714030:CDS | 45.0% | |
AGACGAAGCATGTTAGGTCT+GGG | + | chr5_1:6607916-6607935 | Msa0714030:CDS | 45.0% | |
ATGTTAGGTCTGGGCATTCT+AGG | + | chr5_1:6607925-6607944 | Msa0714030:CDS | 45.0% | |
TTTCTTGGGGCAATATGTGC+TGG | + | chr5_1:6607953-6607972 | Msa0714030:CDS | 45.0% | |
!!! | TCTTTTTGCAGAGGTATCCG+AGG | + | chr5_1:6607994-6608013 | Msa0714030:CDS | 45.0% |
!!! | CTTTTTGCAGAGGTATCCGA+GGG | + | chr5_1:6607995-6608014 | Msa0714030:CDS | 45.0% |
CCATAAACTCTCTCCCTCAT+CGG | - | chr5_1:6608032-6608051 | None:intergenic | 45.0% | |
CGATGAGGGAGAGAGTTTAT+GGG | + | chr5_1:6608030-6608049 | Msa0714030:CDS | 45.0% | |
GGAAGGAGAATTTGCCTAAG+TGG | + | chr5_1:6608060-6608079 | Msa0714030:CDS | 45.0% | |
GCGCAAACAACTTGAAGATG+TGG | + | chr5_1:6609229-6609248 | Msa0714030:CDS | 45.0% | |
! | TGAGTAAACAGAGCATCTGC+AGG | - | chr5_1:6609554-6609573 | None:intergenic | 45.0% |
! | ACACATGCTCTAAACAGCCT+TGG | - | chr5_1:6609578-6609597 | None:intergenic | 45.0% |
CCAAGTGCTCTCATAACTTG+GGG | - | chr5_1:6609653-6609672 | None:intergenic | 45.0% | |
TTCCAGAAATTACCGAAGCC+AGG | + | chr5_1:6609699-6609718 | Msa0714030:CDS | 45.0% | |
TTCCTGGCTTCGGTAATTTC+TGG | - | chr5_1:6609704-6609723 | None:intergenic | 45.0% | |
AAGCTCTATGTTCCTGGCTT+CGG | - | chr5_1:6609714-6609733 | None:intergenic | 45.0% | |
AAGTCCAAGCTCTATGTTCC+TGG | - | chr5_1:6609720-6609739 | None:intergenic | 45.0% | |
AGGAACATAGAGCTTGGACT+TGG | + | chr5_1:6609719-6609738 | Msa0714030:CDS | 45.0% | |
GCAGAAAACAAAGCTGCAAG+TGG | - | chr5_1:6610450-6610469 | None:intergenic | 45.0% | |
AAAAAGTGAGGTGAGGAGAC+GGG | + | chr5_1:6610682-6610701 | Msa0714030:intron | 45.0% | |
! | TCACATCTAAGATCAGGGTC+AGG | - | chr5_1:6610849-6610868 | None:intergenic | 45.0% |
AACCTAAGAGAAAGATGGGC+AGG | + | chr5_1:6610917-6610936 | Msa0714030:intron | 45.0% | |
ACCTAAGAGAAAGATGGGCA+GGG | + | chr5_1:6610918-6610937 | Msa0714030:intron | 45.0% | |
AAGATGGGCAGGGAATTATG+CGG | + | chr5_1:6610928-6610947 | Msa0714030:intron | 45.0% | |
CTGCAGTACAATTACGGGAA+GGG | + | chr5_1:6611009-6611028 | Msa0714030:intron | 45.0% | |
CAATTACGGGAAGGGATGTT+TGG | + | chr5_1:6611017-6611036 | Msa0714030:intron | 45.0% | |
! | TGGTTTGAGACTTTGAGCTG+TGG | + | chr5_1:6611099-6611118 | Msa0714030:intron | 45.0% |
! | ATGATGCTAACAAGGGGCAT+CGG | + | chr5_1:6611259-6611278 | Msa0714030:intron | 45.0% |
TATTACCGACGAGACAGAGA+AGG | + | chr5_1:6611412-6611431 | Msa0714030:intron | 45.0% | |
ATTACCGACGAGACAGAGAA+GGG | + | chr5_1:6611413-6611432 | Msa0714030:intron | 45.0% | |
ATTTAGATGCTCCTGGGTTG+TGG | + | chr5_1:6611572-6611591 | Msa0714030:CDS | 45.0% | |
GATTAACAGCTGTTGTGGCT+GGG | - | chr5_1:6611732-6611751 | None:intergenic | 45.0% | |
TGATTAACAGCTGTTGTGGC+TGG | - | chr5_1:6611733-6611752 | None:intergenic | 45.0% | |
TGAGCAGATTCAGCCTAAAG+AGG | + | chr5_1:6611828-6611847 | Msa0714030:CDS | 45.0% | |
AACTGGGCTCCTTAGATAAC+CGG | + | chr5_1:6612030-6612049 | Msa0714030:three_prime_UTR | 45.0% | |
AGATAACCGGAACAGAGATG+AGG | + | chr5_1:6612043-6612062 | Msa0714030:three_prime_UTR | 45.0% | |
ACTGCTTGTTCTACTCTCCA+TGG | + | chr5_1:6612077-6612096 | Msa0714030:three_prime_UTR | 45.0% | |
!!! | GTGTTGCTGGGTTTTGGACA+GGG | - | chr5_1:6607223-6607242 | None:intergenic | 50.0% |
!!! | TGTGTTGCTGGGTTTTGGAC+AGG | - | chr5_1:6607224-6607243 | None:intergenic | 50.0% |
!! | GGGTTTGTGTTGCTGGGTTT+TGG | - | chr5_1:6607229-6607248 | None:intergenic | 50.0% |
! | TTTGGGGGGTTTGTGTTGCT+GGG | - | chr5_1:6607235-6607254 | None:intergenic | 50.0% |
TGTAGATGAAGGGGTTTGGG+GGG | - | chr5_1:6607249-6607268 | None:intergenic | 50.0% | |
TTGGATGGGGAAAGGAGAGA+AGG | - | chr5_1:6607448-6607467 | None:intergenic | 50.0% | |
AAGGGGGTAGTTTCGGGATT+TGG | - | chr5_1:6607487-6607506 | None:intergenic | 50.0% | |
AACGTGAAGGGGGTAGTTTC+GGG | - | chr5_1:6607493-6607512 | None:intergenic | 50.0% | |
GAACGTGAAGGGGGTAGTTT+CGG | - | chr5_1:6607494-6607513 | None:intergenic | 50.0% | |
TAACTGCGAGAACGTGAAGG+GGG | - | chr5_1:6607503-6607522 | None:intergenic | 50.0% | |
GTAACTGCGAGAACGTGAAG+GGG | - | chr5_1:6607504-6607523 | None:intergenic | 50.0% | |
CTCACACGAAGGATGCTGAA+AGG | - | chr5_1:6607889-6607908 | None:intergenic | 50.0% | |
GGGGCAATATGTGCTGGAAT+TGG | + | chr5_1:6607959-6607978 | Msa0714030:CDS | 50.0% | |
CCGATGAGGGAGAGAGTTTA+TGG | + | chr5_1:6608029-6608048 | Msa0714030:CDS | 50.0% | |
GTGCTCAGGATGTTGAAGAC+TGG | + | chr5_1:6608616-6608635 | Msa0714030:intron | 50.0% | |
CGGAATGGATCCAGATGATG+AGG | + | chr5_1:6609190-6609209 | Msa0714030:CDS | 50.0% | |
ATGATGAGGATTGCCAGCCT+AGG | + | chr5_1:6609204-6609223 | Msa0714030:CDS | 50.0% | |
TGATGAGGATTGCCAGCCTA+GGG | + | chr5_1:6609205-6609224 | Msa0714030:CDS | 50.0% | |
! | TCAAGTTGTTTGCGCTCCCT+AGG | - | chr5_1:6609224-6609243 | None:intergenic | 50.0% |
! | GTAAACAGAGCATCTGCAGG+AGG | - | chr5_1:6609551-6609570 | None:intergenic | 50.0% |
! | TTTAGAGCATGTGTTCCCCC+TGG | + | chr5_1:6609584-6609603 | Msa0714030:CDS | 50.0% |
TCTGAATCGATGCATGCCAG+GGG | - | chr5_1:6609603-6609622 | None:intergenic | 50.0% | |
CTCTGAATCGATGCATGCCA+GGG | - | chr5_1:6609604-6609623 | None:intergenic | 50.0% | |
!! | CCCCAAGTTATGAGAGCACT+TGG | + | chr5_1:6609650-6609669 | Msa0714030:CDS | 50.0% |
GAAGCCAGGAACATAGAGCT+TGG | + | chr5_1:6609713-6609732 | Msa0714030:CDS | 50.0% | |
AGAGCTTGGACTTGGATTGC+AGG | + | chr5_1:6609727-6609746 | Msa0714030:CDS | 50.0% | |
TGGCCTCTCTTGCTAGAGTA+CGG | + | chr5_1:6609816-6609835 | Msa0714030:intron | 50.0% | |
AAAAGTGAGGTGAGGAGACG+GGG | + | chr5_1:6610683-6610702 | Msa0714030:intron | 50.0% | |
TCCCTGCCCATCTTTCTCTT+AGG | - | chr5_1:6610922-6610941 | None:intergenic | 50.0% | |
GCTGCAGTACAATTACGGGA+AGG | + | chr5_1:6611008-6611027 | Msa0714030:intron | 50.0% | |
GTTACTGAAGGTGAGGCTTG+AGG | + | chr5_1:6611073-6611092 | Msa0714030:intron | 50.0% | |
GAAGGTGAGGCTTGAGGTAT+TGG | + | chr5_1:6611079-6611098 | Msa0714030:intron | 50.0% | |
!! | GGTGGGTGACCATGTTTTTG+AGG | + | chr5_1:6611171-6611190 | Msa0714030:intron | 50.0% |
!! | TGATGCTAACAAGGGGCATC+GGG | + | chr5_1:6611260-6611279 | Msa0714030:intron | 50.0% |
AAACCGCTTATGAGCGCAAC+CGG | + | chr5_1:6611695-6611714 | Msa0714030:CDS | 50.0% | |
GGTAAGGAAAACCAAGGGGA+TGG | - | chr5_1:6611922-6611941 | None:intergenic | 50.0% | |
ACTCTCCATGGCTCAGATCA+TGG | + | chr5_1:6612089-6612108 | Msa0714030:three_prime_UTR | 50.0% | |
TTGCTCCATGATCTGAGCCA+TGG | - | chr5_1:6612097-6612116 | None:intergenic | 50.0% | |
!!! | TGCTGGGTTTTGGACAGGGT+TGG | - | chr5_1:6607219-6607238 | None:intergenic | 55.0% |
GTTTGGGGGGTTTGTGTTGC+TGG | - | chr5_1:6607236-6607255 | None:intergenic | 55.0% | |
GATGGGGAAAGGAGAGAAGG+AGG | - | chr5_1:6607445-6607464 | None:intergenic | 55.0% | |
GCATTGTTAAGGCGCGACGA+AGG | - | chr5_1:6607741-6607760 | None:intergenic | 55.0% | |
CTCGTAGCGAAACAAGCGCT+TGG | + | chr5_1:6607789-6607808 | Msa0714030:CDS | 55.0% | |
AGGTATCCGAGGGAATTGCC+TGG | + | chr5_1:6608005-6608024 | Msa0714030:CDS | 55.0% | |
ATCGGACCAGGCAATTCCCT+CGG | - | chr5_1:6608014-6608033 | None:intergenic | 55.0% | |
GGAATTGCCTGGTCCGATGA+GGG | + | chr5_1:6608016-6608035 | Msa0714030:CDS | 55.0% | |
GGCTGGCAATCCTCATCATC+TGG | - | chr5_1:6609203-6609222 | None:intergenic | 55.0% | |
CTGAATCGATGCATGCCAGG+GGG | - | chr5_1:6609602-6609621 | None:intergenic | 55.0% | |
CCTCTGAATCGATGCATGCC+AGG | - | chr5_1:6609605-6609624 | None:intergenic | 55.0% | |
!! | CCTGGCATGCATCGATTCAG+AGG | + | chr5_1:6609602-6609621 | Msa0714030:CDS | 55.0% |
CAGCCGTACTCTAGCAAGAG+AGG | - | chr5_1:6609822-6609841 | None:intergenic | 55.0% | |
CTTGATGCAGAGCGAGACAC+AGG | + | chr5_1:6611194-6611213 | Msa0714030:intron | 55.0% | |
GTTTCGCCTTCCAGAAGCTC+GGG | - | chr5_1:6611336-6611355 | None:intergenic | 55.0% | |
GGTTTCGCCTTCCAGAAGCT+CGG | - | chr5_1:6611337-6611356 | None:intergenic | 55.0% | |
CGAAACCTTATGCGAGCCGT+TGG | + | chr5_1:6611350-6611369 | Msa0714030:intron | 55.0% | |
TGCTTCCAACGGCTCGCATA+AGG | - | chr5_1:6611358-6611377 | None:intergenic | 55.0% | |
CTGTCCCTTCTCTGTCTCGT+CGG | - | chr5_1:6611420-6611439 | None:intergenic | 55.0% | |
TTCTCTTGCAGCCACAACCC+AGG | - | chr5_1:6611586-6611605 | None:intergenic | 55.0% | |
TCTCCGGTTGCGCTCATAAG+CGG | - | chr5_1:6611701-6611720 | None:intergenic | 55.0% | |
CTTATGAGCGCAACCGGAGA+CGG | + | chr5_1:6611701-6611720 | Msa0714030:CDS | 55.0% | |
GGGAATTGCCTGGTCCGATG+AGG | + | chr5_1:6608015-6608034 | Msa0714030:CDS | 60.0% | |
ACTCTCTCCCTCATCGGACC+AGG | - | chr5_1:6608026-6608045 | None:intergenic | 60.0% | |
GTTGTTTGCGCTCCCTAGGC+TGG | - | chr5_1:6609220-6609239 | None:intergenic | 60.0% | |
! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr5_1:6610303-6610322 | Msa0714030:intron | 60.0% |
! | GGCATCGGGACAGATGCTGA+GGG | + | chr5_1:6611274-6611293 | Msa0714030:intron | 60.0% |
GCATCGGGACAGATGCTGAG+GGG | + | chr5_1:6611275-6611294 | Msa0714030:intron | 60.0% | |
CATCGGGACAGATGCTGAGG+GGG | + | chr5_1:6611276-6611295 | Msa0714030:intron | 60.0% | |
CTGAGTGTCTCCCGAGCTTC+TGG | + | chr5_1:6611323-6611342 | Msa0714030:intron | 60.0% | |
GTGTCTCCCGAGCTTCTGGA+AGG | + | chr5_1:6611327-6611346 | Msa0714030:intron | 60.0% | |
TGGCTGGGTTTCTCCGTCTC+CGG | - | chr5_1:6611717-6611736 | None:intergenic | 60.0% | |
! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr5_1:6610304-6610323 | Msa0714030:intron | 65.0% |
TGAGGTGAGGAGACGGGGAC+TGG | + | chr5_1:6610688-6610707 | Msa0714030:intron | 65.0% | |
GAGGTGAGGAGACGGGGACT+GGG | + | chr5_1:6610689-6610708 | Msa0714030:intron | 65.0% | |
GAGACGGGGACTGGGACTCA+TGG | + | chr5_1:6610697-6610716 | Msa0714030:intron | 65.0% | |
!! | GGGCATCGGGACAGATGCTG+AGG | + | chr5_1:6611273-6611292 | Msa0714030:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 6607214 | 6612206 | 6607214 | ID=Msa0714030;Name=Msa0714030 |
chr5_1 | mRNA | 6607214 | 6612206 | 6607214 | ID=Msa0714030-mRNA-1;Parent=Msa0714030;Name=Msa0714030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=170|0.75|0.8|1|1|1|5|351|539 |
chr5_1 | exon | 6607214 | 6608168 | 6607214 | ID=Msa0714030-mRNA-1:exon:2745;Parent=Msa0714030-mRNA-1 |
chr5_1 | exon | 6609109 | 6609337 | 6609109 | ID=Msa0714030-mRNA-1:exon:2746;Parent=Msa0714030-mRNA-1 |
chr5_1 | exon | 6609548 | 6609748 | 6609548 | ID=Msa0714030-mRNA-1:exon:2747;Parent=Msa0714030-mRNA-1 |
chr5_1 | exon | 6610457 | 6610543 | 6610457 | ID=Msa0714030-mRNA-1:exon:2748;Parent=Msa0714030-mRNA-1 |
chr5_1 | exon | 6611538 | 6612206 | 6611538 | ID=Msa0714030-mRNA-1:exon:2749;Parent=Msa0714030-mRNA-1 |
chr5_1 | five_prime_UTR | 6607214 | 6607383 | 6607214 | ID=Msa0714030-mRNA-1:five_prime_utr;Parent=Msa0714030-mRNA-1 |
chr5_1 | CDS | 6607384 | 6608168 | 6607384 | ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1 |
chr5_1 | CDS | 6609109 | 6609337 | 6609109 | ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1 |
chr5_1 | CDS | 6609548 | 6609748 | 6609548 | ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1 |
chr5_1 | CDS | 6610457 | 6610543 | 6610457 | ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1 |
chr5_1 | CDS | 6611538 | 6611855 | 6611538 | ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1 |
chr5_1 | three_prime_UTR | 6611856 | 6612206 | 6611856 | ID=Msa0714030-mRNA-1:three_prime_utr;Parent=Msa0714030-mRNA-1 |
Gene Sequence |
Protein sequence |