AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0714030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714030 MtrunA17_Chr5g0401461 95.918 539 9 1 1 539 1 526 0.0 1058
Msa0714030 MtrunA17_Chr4g0053831 70.874 515 129 6 26 537 23 519 0.0 753
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714030 AT4G37510.1 77.909 507 101 3 34 539 41 537 0.0 823
Msa0714030 AT2G48121.2 75.325 77 19 0 463 539 1 77 4.47e-34 124
Msa0714030 AT2G48121.1 75.000 56 14 0 484 539 20 75 4.91e-22 90.5

Find 142 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCGTAGGTCGGTATTT+TGG 0.109591 5_1:+6609099 Msa0714030:intron
GTTTGATACTTTGTTGTATT+TGG 0.144675 5_1:+6607863 Msa0714030:CDS
GGACTCTCATATCTTGTTTA+TGG 0.145537 5_1:+6611763 Msa0714030:CDS
AATGAGAAGTTAGTTGGTTT+TGG 0.179441 5_1:-6607414 None:intergenic
GCAAGATATTGTTGCTTATA+AGG 0.188751 5_1:+6609289 Msa0714030:CDS
CCGATGAGGGAGAGAGTTTA+TGG 0.193361 5_1:+6608029 Msa0714030:CDS
GGAGGGGTTGTGAAGATTAA+TGG 0.211332 5_1:-6607304 None:intergenic
TTCCTGGCTTCGGTAATTTC+TGG 0.213137 5_1:-6609701 None:intergenic
GGGTTTGTGTTGCTGGGTTT+TGG 0.218590 5_1:-6607226 None:intergenic
GATTATTTGAAAATTCAATT+TGG 0.228145 5_1:+6612147 Msa0714030:three_prime_UTR
CATTGTAGATGAAGGGGTTT+GGG 0.240337 5_1:-6607249 None:intergenic
GATATTTCCTTATGATAATA+TGG 0.242859 5_1:+6608109 Msa0714030:CDS
TCTCATATTTAGACCTCTTT+AGG 0.265901 5_1:-6611841 None:intergenic
GGGGCAATCTATCTTTGTTT+TGG 0.268972 5_1:+6609131 Msa0714030:CDS
TTAACAATGCCGATAAATTA+TGG 0.272123 5_1:+6607751 Msa0714030:CDS
TTGATAGTGGAAAATAAAAT+TGG 0.288695 5_1:-6607325 None:intergenic
GACTCTCATATCTTGTTTAT+GGG 0.294493 5_1:+6611764 Msa0714030:CDS
ATCGATTCAGAGGAAATATA+TGG 0.308151 5_1:+6609612 Msa0714030:CDS
GATGAGAATGAGAAGTTAGT+TGG 0.309923 5_1:-6607420 None:intergenic
ATGTTAGGTCTGGGCATTCT+AGG 0.312555 5_1:+6607925 Msa0714030:CDS
AAAAGAACACGGTAGACTTC+TGG 0.315797 5_1:-6609158 None:intergenic
ATTCTGTCTGTCATTTCTAA+TGG 0.317291 5_1:-6609677 None:intergenic
ATTATTTGAAAATTCAATTT+GGG 0.324240 5_1:+6612148 Msa0714030:three_prime_UTR
GAGGGGTTGTGAAGATTAAT+GGG 0.325613 5_1:-6607303 None:intergenic
GGTAGACAAGAACTTAATAA+TGG 0.332729 5_1:-6607717 None:intergenic
ACATTGTAGATGAAGGGGTT+TGG 0.336926 5_1:-6607250 None:intergenic
GAGAGAGTTTATGGGTTGAT+TGG 0.340372 5_1:+6608038 Msa0714030:CDS
TGTACTCTACTTGTTAGAAC+TGG 0.344400 5_1:+6612013 Msa0714030:three_prime_UTR
TGATTAACAGCTGTTGTGGC+TGG 0.347745 5_1:-6611730 None:intergenic
CTCATCTATCCATAATTTAT+CGG 0.347797 5_1:-6607760 None:intergenic
TGCTCAAATTTGTACTTTGA+TGG 0.350401 5_1:-6610472 None:intergenic
AGTTTGAAAACAAGCTAAAC+TGG 0.389097 5_1:+6609267 Msa0714030:CDS
AGAGCTTGGACTTGGATTGC+AGG 0.389569 5_1:+6609727 Msa0714030:CDS
ATAATTTATCGGCATTGTTA+AGG 0.390095 5_1:-6607749 None:intergenic
ATCTCTGTTCCGGTTATCTA+AGG 0.390223 5_1:-6612039 None:intergenic
AAGTCCAAGCTCTATGTTCC+TGG 0.390461 5_1:-6609717 None:intergenic
GGCTGGCAATCCTCATCATC+TGG 0.399583 5_1:-6609200 None:intergenic
AAGCTCTATGTTCCTGGCTT+CGG 0.400967 5_1:-6609711 None:intergenic
GAACAAAGACGAAGCATGTT+AGG 0.401968 5_1:+6607910 Msa0714030:CDS
ATCCAAGTGCTCTCATAACT+TGG 0.404958 5_1:-6609652 None:intergenic
AATAAAACGGTGAAGCTGTT+TGG 0.409551 5_1:-6611653 None:intergenic
ATGTATCCTCATCTCTGTTC+CGG 0.413416 5_1:-6612049 None:intergenic
CAACAAAGTATCAAACTGTT+TGG 0.422950 5_1:-6607856 None:intergenic
TGGCTGGGTTTCTCCGTCTC+CGG 0.431775 5_1:-6611714 None:intergenic
AAGACGAAGCATGTTAGGTC+TGG 0.432221 5_1:+6607915 Msa0714030:CDS
AGGAACATAGAGCTTGGACT+TGG 0.433949 5_1:+6609719 Msa0714030:CDS
ATTTAGATGCTCCTGGGTTG+TGG 0.437257 5_1:+6611572 Msa0714030:CDS
AACTGGGCTCCTTAGATAAC+CGG 0.438291 5_1:+6612030 Msa0714030:three_prime_UTR
ATGAAGCATTTAGATGCTCC+TGG 0.439342 5_1:+6611565 Msa0714030:CDS
AGAGAGTTTATGGGTTGATT+GGG 0.442300 5_1:+6608039 Msa0714030:CDS
TGAACCATCAGACACATTAG+AGG 0.448502 5_1:+6607821 Msa0714030:CDS
ACTCTCCATGGCTCAGATCA+TGG 0.450343 5_1:+6612089 Msa0714030:three_prime_UTR
GTAGACAAGAACTTAATAAT+GGG 0.452131 5_1:-6607716 None:intergenic
CCCCAAGTTATGAGAGCACT+TGG 0.454535 5_1:+6609650 Msa0714030:CDS
AAACCGCTTATGAGCGCAAC+CGG 0.458052 5_1:+6611695 Msa0714030:CDS
GGGGCAATATGTGCTGGAAT+TGG 0.460146 5_1:+6607959 Msa0714030:CDS
GTTGTTTGCGCTCCCTAGGC+TGG 0.460379 5_1:-6609217 None:intergenic
TCAAGTTGTTTGCGCTCCCT+AGG 0.462470 5_1:-6609221 None:intergenic
GTTTGAAGATTGAATTGTGC+TGG 0.462819 5_1:-6607354 None:intergenic
GGAAGGAGAATTTGCCTAAG+TGG 0.464839 5_1:+6608060 Msa0714030:CDS
AAAGTATCAAACTGTTTGGC+AGG 0.468742 5_1:-6607852 None:intergenic
AGATTAATGGGATTGATTTG+TGG 0.469630 5_1:-6607291 None:intergenic
CCTCTGAATCGATGCATGCC+AGG 0.470072 5_1:-6609602 None:intergenic
ACTGCTTGTTCTACTCTCCA+TGG 0.470450 5_1:+6612077 Msa0714030:three_prime_UTR
TTTGAGAGATTAGAATATGT+TGG 0.474238 5_1:+6610508 Msa0714030:CDS
GATTAACAGCTGTTGTGGCT+GGG 0.475840 5_1:-6611729 None:intergenic
CGATGAGGGAGAGAGTTTAT+GGG 0.478368 5_1:+6608030 Msa0714030:CDS
AAAATTAGAACTTACTTGAC+AGG 0.483319 5_1:-6608161 None:intergenic
ATCTTATCCATATTATCATA+AGG 0.484697 5_1:-6608116 None:intergenic
TCCAAGTGCTCTCATAACTT+GGG 0.485073 5_1:-6609651 None:intergenic
TTGGATGGGGAAAGGAGAGA+AGG 0.485624 5_1:-6607445 None:intergenic
TGAGCAGATTCAGCCTAAAG+AGG 0.487808 5_1:+6611828 Msa0714030:CDS
GATGGGGAAAGGAGAGAAGG+AGG 0.489046 5_1:-6607442 None:intergenic
ATTAAGATTTGGATGGGGAA+AGG 0.504291 5_1:-6607453 None:intergenic
TTTCTTGGGGCAATATGTGC+TGG 0.507263 5_1:+6607953 Msa0714030:CDS
CTCGTAGCGAAACAAGCGCT+TGG 0.514904 5_1:+6607789 Msa0714030:CDS
TATCATCATATATAATAAAA+CGG 0.517957 5_1:-6611666 None:intergenic
GTGCTGGGAAATGTTGATAG+TGG 0.520234 5_1:-6607338 None:intergenic
AAACTAAGTGGATCAAATCA+TGG 0.520710 5_1:-6611940 None:intergenic
AGTTTATGGGTTGATTGGGA+AGG 0.522441 5_1:+6608043 Msa0714030:CDS
GTCTTTGTTCTCTCACACGA+AGG 0.525988 5_1:-6607897 None:intergenic
GCTGTTAATCAAGCTATTCA+CGG 0.527856 5_1:+6611742 Msa0714030:CDS
TAGTGGAAAATAAAATTGGA+GGG 0.528126 5_1:-6607321 None:intergenic
AGACGAAGCATGTTAGGTCT+GGG 0.530011 5_1:+6607916 Msa0714030:CDS
CTCTGAATCGATGCATGCCA+GGG 0.532007 5_1:-6609601 None:intergenic
ACACATGCTCTAAACAGCCT+TGG 0.533681 5_1:-6609575 None:intergenic
CTTATGAGCGCAACCGGAGA+CGG 0.533815 5_1:+6611701 Msa0714030:CDS
TTCCAGAAATTACCGAAGCC+AGG 0.536155 5_1:+6609699 Msa0714030:CDS
TCGATTCAGAGGAAATATAT+GGG 0.538733 5_1:+6609613 Msa0714030:CDS
ATTGTAGATGAAGGGGTTTG+GGG 0.542616 5_1:-6607248 None:intergenic
ACTCTCTCCCTCATCGGACC+AGG 0.543075 5_1:-6608023 None:intergenic
ATGATGAGGATTGCCAGCCT+AGG 0.543609 5_1:+6609204 Msa0714030:CDS
TTTGAAGATTGAATTGTGCT+GGG 0.545348 5_1:-6607353 None:intergenic
TTGCTCCATGATCTGAGCCA+TGG 0.546436 5_1:-6612094 None:intergenic
AAGTGGATCAAATCATGGTA+AGG 0.547895 5_1:-6611935 None:intergenic
AGCTTGATTAACAGCTGTTG+TGG 0.551231 5_1:-6611734 None:intergenic
TGATGAGGATTGCCAGCCTA+GGG 0.552339 5_1:+6609205 Msa0714030:CDS
TTTAGAATGTAACGTCTTGG+TGG 0.553258 5_1:-6607624 None:intergenic
ATAGTGGAAAATAAAATTGG+AGG 0.555100 5_1:-6607322 None:intergenic
TGAGTAAACAGAGCATCTGC+AGG 0.557301 5_1:-6609551 None:intergenic
ATCGGACCAGGCAATTCCCT+CGG 0.558254 5_1:-6608011 None:intergenic
CCATAAACTCTCTCCCTCAT+CGG 0.567145 5_1:-6608029 None:intergenic
TCTCCGGTTGCGCTCATAAG+CGG 0.572925 5_1:-6611698 None:intergenic
TTCTCTTGCAGCCACAACCC+AGG 0.573873 5_1:-6611583 None:intergenic
ATATGTGCTGGAATTGGCAT+TGG 0.575967 5_1:+6607965 Msa0714030:CDS
GAAGCCAGGAACATAGAGCT+TGG 0.576371 5_1:+6609713 Msa0714030:CDS
TGTAACTGCGAGAACGTGAA+GGG 0.579147 5_1:-6607502 None:intergenic
GGTAAGGAAAACCAAGGGGA+TGG 0.579225 5_1:-6611919 None:intergenic
ACATGGCAATAGAGTACTCT+CGG 0.579660 5_1:+6611872 Msa0714030:three_prime_UTR
CCTGGCATGCATCGATTCAG+AGG 0.580371 5_1:+6609602 Msa0714030:CDS
ATGCTCTGTTTACTCATCCA+AGG 0.580822 5_1:+6609558 Msa0714030:CDS
GTACTCTACTTGTTAGAACT+GGG 0.583609 5_1:+6612014 Msa0714030:three_prime_UTR
GGAATTGCCTGGTCCGATGA+GGG 0.585185 5_1:+6608016 Msa0714030:CDS
CAATCTTCAAACAACTACAA+TGG 0.585823 5_1:+6607365 Msa0714030:exon
TGTAGATGAAGGGGTTTGGG+GGG 0.589369 5_1:-6607246 None:intergenic
CGGAATGGATCCAGATGATG+AGG 0.590285 5_1:+6609190 Msa0714030:CDS
GCGCAAACAACTTGAAGATG+TGG 0.590741 5_1:+6609229 Msa0714030:CDS
TGAAGCATTTAGATGCTCCT+GGG 0.592431 5_1:+6611566 Msa0714030:CDS
TCATCCTCTAATGTGTCTGA+TGG 0.595112 5_1:-6607825 None:intergenic
TTGTAGATGAAGGGGTTTGG+GGG 0.604922 5_1:-6607247 None:intergenic
AGGTATCCGAGGGAATTGCC+TGG 0.610907 5_1:+6608005 Msa0714030:CDS
CCAAGTGCTCTCATAACTTG+GGG 0.611381 5_1:-6609650 None:intergenic
ATCATGGTAAGGAAAACCAA+GGG 0.611834 5_1:-6611924 None:intergenic
CTCACACGAAGGATGCTGAA+AGG 0.613808 5_1:-6607886 None:intergenic
TTGTAACTGCGAGAACGTGA+AGG 0.616613 5_1:-6607503 None:intergenic
GGGAATTGCCTGGTCCGATG+AGG 0.628852 5_1:+6608015 Msa0714030:CDS
ATAATATGGATAAGATTGTG+AGG 0.636146 5_1:+6608123 Msa0714030:CDS
AGTGGAAAATAAAATTGGAG+GGG 0.636810 5_1:-6607320 None:intergenic
GCATTGTTAAGGCGCGACGA+AGG 0.641980 5_1:-6607738 None:intergenic
GTAAACAGAGCATCTGCAGG+AGG 0.645297 5_1:-6609548 None:intergenic
CTAGCAGCTTTAATCCACTT+AGG 0.646479 5_1:-6608074 None:intergenic
AATCTCTCAAAGCAAAATCG+AGG 0.653019 5_1:-6610496 None:intergenic
TCTGAATCGATGCATGCCAG+GGG 0.656480 5_1:-6609600 None:intergenic
AATCATGGTAAGGAAAACCA+AGG 0.657108 5_1:-6611925 None:intergenic
AGATAACCGGAACAGAGATG+AGG 0.667397 5_1:+6612043 Msa0714030:three_prime_UTR
GTAACTGCGAGAACGTGAAG+GGG 0.674979 5_1:-6607501 None:intergenic
AGTTCTTTAAGAAGTCGTTG+AGG 0.689037 5_1:-6607561 None:intergenic
ATTGTGAGGAGAGATAGAGA+AGG 0.699451 5_1:+6608137 Msa0714030:CDS
CTGAATCGATGCATGCCAGG+GGG 0.708978 5_1:-6609599 None:intergenic
TAACTGCGAGAACGTGAAGG+GGG 0.713161 5_1:-6607500 None:intergenic
TCATGGTAAGGAAAACCAAG+GGG 0.715394 5_1:-6611923 None:intergenic
AATATGAGACAAGAATGACA+TGG 0.759010 5_1:+6611855 Msa0714030:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATTTTGATATTATGT+TGG + chr5_1:6608203-6608222 Msa0714030:intron 10.0%
!! AATTATGTTAATATTTGTAT+TGG + chr5_1:6608654-6608673 Msa0714030:intron 10.0%
!!! TGTATTAATAGTTTAAAATT+AGG + chr5_1:6610235-6610254 Msa0714030:intron 10.0%
!! TATCATCATATATAATAAAA+CGG - chr5_1:6611669-6611688 None:intergenic 10.0%
!! ATTATTTGAAAATTCAATTT+GGG + chr5_1:6612148-6612167 Msa0714030:three_prime_UTR 10.0%
!!! TGTTGTATTCTTTTTTTTTT+TGG + chr5_1:6608835-6608854 Msa0714030:intron 15.0%
!!! TTTTTATTTTCTTAAGGATT+TGG + chr5_1:6611522-6611541 Msa0714030:intron 15.0%
!! GATTATTTGAAAATTCAATT+TGG + chr5_1:6612147-6612166 Msa0714030:three_prime_UTR 15.0%
!!! TTGATAGTGGAAAATAAAAT+TGG - chr5_1:6607328-6607347 None:intergenic 20.0%
!!! TTTTTGATTAAGATTTGGAT+GGG - chr5_1:6607462-6607481 None:intergenic 20.0%
!! GATATTTCCTTATGATAATA+TGG + chr5_1:6608109-6608128 Msa0714030:CDS 20.0%
!! ATCTTATCCATATTATCATA+AGG - chr5_1:6608119-6608138 None:intergenic 20.0%
!! TTCACATAATGAATGATATT+TGG + chr5_1:6608678-6608697 Msa0714030:intron 20.0%
!! AAAGAATACAACAGATATAA+AGG - chr5_1:6608828-6608847 None:intergenic 20.0%
!!! CAAGTTTACTTCTAAAAAAA+GGG - chr5_1:6610333-6610352 None:intergenic 20.0%
!!! ACAAGTTTACTTCTAAAAAA+AGG - chr5_1:6610334-6610353 None:intergenic 20.0%
!!! ACAACGTTTTTATTTTCTTA+AGG + chr5_1:6611516-6611535 Msa0714030:intron 20.0%
!! TAAATAACCTAAAAACTAAG+TGG - chr5_1:6611955-6611974 None:intergenic 20.0%
!!! TGATTTGTGGATTTTTGTAT+TGG - chr5_1:6607281-6607300 None:intergenic 25.0%
! TAGTGGAAAATAAAATTGGA+GGG - chr5_1:6607324-6607343 None:intergenic 25.0%
!! ATAGTGGAAAATAAAATTGG+AGG - chr5_1:6607325-6607344 None:intergenic 25.0%
!!! TTTTGATTAAGATTTGGATG+GGG - chr5_1:6607461-6607480 None:intergenic 25.0%
!!! GTTTTTGATTAAGATTTGGA+TGG - chr5_1:6607463-6607482 None:intergenic 25.0%
!!! TGGTGTTTTTGATTAAGATT+TGG - chr5_1:6607467-6607486 None:intergenic 25.0%
!!! GTTGAGGATTGTTATTTTTA+GGG - chr5_1:6607548-6607567 None:intergenic 25.0%
! GTAGACAAGAACTTAATAAT+GGG - chr5_1:6607719-6607738 None:intergenic 25.0%
! ATAATTTATCGGCATTGTTA+AGG - chr5_1:6607752-6607771 None:intergenic 25.0%
! TTAACAATGCCGATAAATTA+TGG + chr5_1:6607751-6607770 Msa0714030:CDS 25.0%
! CTCATCTATCCATAATTTAT+CGG - chr5_1:6607763-6607782 None:intergenic 25.0%
!! GTTTGATACTTTGTTGTATT+TGG + chr5_1:6607863-6607882 Msa0714030:CDS 25.0%
! ATAATATGGATAAGATTGTG+AGG + chr5_1:6608123-6608142 Msa0714030:CDS 25.0%
! AAAATTAGAACTTACTTGAC+AGG - chr5_1:6608164-6608183 None:intergenic 25.0%
! TCAATCAAACTTTACTATGT+AGG + chr5_1:6608306-6608325 Msa0714030:intron 25.0%
! TGAGAAGAATATAACTAACT+CGG - chr5_1:6608369-6608388 None:intergenic 25.0%
!!! TGAATTGATTTGTTAGGATA+AGG + chr5_1:6608466-6608485 Msa0714030:intron 25.0%
! GTTTATATCACTATAACTCA+TGG - chr5_1:6608771-6608790 None:intergenic 25.0%
! CAAATTGATTAACAGCATAT+GGG - chr5_1:6608991-6609010 None:intergenic 25.0%
! ACAAATTGATTAACAGCATA+TGG - chr5_1:6608992-6609011 None:intergenic 25.0%
! AATATAGAACATTCGATTGT+AGG - chr5_1:6609494-6609513 None:intergenic 25.0%
! AAATGTGAAAGTAGAATGAA+AGG - chr5_1:6609767-6609786 None:intergenic 25.0%
! TTCTATTTATTATCCTTCTC+AGG + chr5_1:6609891-6609910 Msa0714030:intron 25.0%
!!! TTGATAATTCTGTTTTTACC+CGG + chr5_1:6610068-6610087 Msa0714030:intron 25.0%
! ATTTACATAAACAGCTAAAC+CGG - chr5_1:6610090-6610109 None:intergenic 25.0%
!!! TATTCACTTTTCTATTGAAG+TGG + chr5_1:6610366-6610385 Msa0714030:intron 25.0%
!!! ATTCACTTTTCTATTGAAGT+GGG + chr5_1:6610367-6610386 Msa0714030:intron 25.0%
! TTTGAGAGATTAGAATATGT+TGG + chr5_1:6610508-6610527 Msa0714030:CDS 25.0%
! GAAGACTCTAATTTCATTAA+TGG + chr5_1:6610576-6610595 Msa0714030:intron 25.0%
! TTATCGCATTTCTGATAATA+GGG - chr5_1:6610626-6610645 None:intergenic 25.0%
! TTTATCGCATTTCTGATAAT+AGG - chr5_1:6610627-6610646 None:intergenic 25.0%
! ATCTTGAATAGAAAAAAGTG+AGG + chr5_1:6610670-6610689 Msa0714030:intron 25.0%
!! CATTATTCTGAAAAATAGCT+TGG + chr5_1:6610735-6610754 Msa0714030:intron 25.0%
!!! ATTTTTCACATCTAAGATCA+GGG - chr5_1:6610854-6610873 None:intergenic 25.0%
!!! AATTTTTCACATCTAAGATC+AGG - chr5_1:6610855-6610874 None:intergenic 25.0%
!!! CATGGAAGCTTTTTTTTTTT+TGG - chr5_1:6610894-6610913 None:intergenic 25.0%
! AATTGTTTGAAAGTTACTGA+AGG + chr5_1:6611061-6611080 Msa0714030:intron 25.0%
!!! TTCTGAAATATAAACAAGAG+AGG + chr5_1:6611150-6611169 Msa0714030:intron 25.0%
! AAAAAAGATGATGCTAACAA+GGG + chr5_1:6611252-6611271 Msa0714030:intron 25.0%
!! ATTCTTCTGAACAAATTTTG+TGG + chr5_1:6611616-6611635 Msa0714030:CDS 25.0%
!!! ATTTGATCCACTTAGTTTTT+AGG + chr5_1:6611945-6611964 Msa0714030:three_prime_UTR 25.0%
! TTTTGACATTGTAGATGAAG+GGG - chr5_1:6607258-6607277 None:intergenic 30.0%
!! GTTTTGACATTGTAGATGAA+GGG - chr5_1:6607259-6607278 None:intergenic 30.0%
!! AGATTAATGGGATTGATTTG+TGG - chr5_1:6607294-6607313 None:intergenic 30.0%
AGTGGAAAATAAAATTGGAG+GGG - chr5_1:6607323-6607342 None:intergenic 30.0%
TTTGAAGATTGAATTGTGCT+GGG - chr5_1:6607356-6607375 None:intergenic 30.0%
CAATCTTCAAACAACTACAA+TGG + chr5_1:6607365-6607384 Msa0714030:exon 30.0%
!!! ATGAGAAGTTAGTTGGTTTT+GGG - chr5_1:6607416-6607435 None:intergenic 30.0%
!! AATGAGAAGTTAGTTGGTTT+TGG - chr5_1:6607417-6607436 None:intergenic 30.0%
!! TTTTAGGGAAGTCTTTTGTT+GGG - chr5_1:6607533-6607552 None:intergenic 30.0%
!! TTTTTAGGGAAGTCTTTTGT+TGG - chr5_1:6607534-6607553 None:intergenic 30.0%
!!! CGTTGAGGATTGTTATTTTT+AGG - chr5_1:6607549-6607568 None:intergenic 30.0%
!!! TTGGTGGTGATTTTGATTTT+GGG - chr5_1:6607611-6607630 None:intergenic 30.0%
!! AATGATTTTAATGAGAGCTG+TGG - chr5_1:6607696-6607715 None:intergenic 30.0%
GGTAGACAAGAACTTAATAA+TGG - chr5_1:6607720-6607739 None:intergenic 30.0%
! CAACAAAGTATCAAACTGTT+TGG - chr5_1:6607859-6607878 None:intergenic 30.0%
!!! CATTCTAGGTTGTTTTTCTT+GGG + chr5_1:6607939-6607958 Msa0714030:CDS 30.0%
!!! ATTCTAGGTTGTTTTTCTTG+GGG + chr5_1:6607940-6607959 Msa0714030:CDS 30.0%
ACATTGCGTAGTTTATTTGA+TGG + chr5_1:6608388-6608407 Msa0714030:intron 30.0%
CATTGCGTAGTTTATTTGAT+GGG + chr5_1:6608389-6608408 Msa0714030:intron 30.0%
ATTGCGTAGTTTATTTGATG+GGG + chr5_1:6608390-6608409 Msa0714030:intron 30.0%
TTAGTTAGATATCATGTGAC+CGG + chr5_1:6608413-6608432 Msa0714030:intron 30.0%
GACATCAAATGATCATAAAC+CGG - chr5_1:6608435-6608454 None:intergenic 30.0%
CCTAACAAATCAATTCAGTT+TGG - chr5_1:6608463-6608482 None:intergenic 30.0%
!! CCAAACTGAATTGATTTGTT+AGG + chr5_1:6608460-6608479 Msa0714030:intron 30.0%
! CATAAACTTAAAAGTGCACA+AGG - chr5_1:6608712-6608731 None:intergenic 30.0%
! TTTGTTGCTATCTCATTTTC+AGG + chr5_1:6608867-6608886 Msa0714030:intron 30.0%
ACCATCTTATATGATTGAGT+TGG + chr5_1:6609018-6609037 Msa0714030:intron 30.0%
ACCAACTCAATCATATAAGA+TGG - chr5_1:6609022-6609041 None:intergenic 30.0%
!! CACATTTGTTATTCTATCGT+AGG + chr5_1:6609087-6609106 Msa0714030:intron 30.0%
!! TTTGTTATTCTATCGTAGGT+CGG + chr5_1:6609091-6609110 Msa0714030:intron 30.0%
AGTTTGAAAACAAGCTAAAC+TGG + chr5_1:6609267-6609286 Msa0714030:CDS 30.0%
! GCAAGATATTGTTGCTTATA+AGG + chr5_1:6609289-6609308 Msa0714030:CDS 30.0%
CAATCGAATGTTCTATATTG+AGG + chr5_1:6609495-6609514 Msa0714030:intron 30.0%
! ATCGATTCAGAGGAAATATA+TGG + chr5_1:6609612-6609631 Msa0714030:CDS 30.0%
TCGATTCAGAGGAAATATAT+GGG + chr5_1:6609613-6609632 Msa0714030:CDS 30.0%
! ATTCTGTCTGTCATTTCTAA+TGG - chr5_1:6609680-6609699 None:intergenic 30.0%
! AGATGTTTAGTGATAGTGAT+TGG + chr5_1:6609935-6609954 Msa0714030:intron 30.0%
!! AAACTTGAAAGTATCACTGT+AGG - chr5_1:6610012-6610031 None:intergenic 30.0%
! CAAGTTTTTGTGTTGAATTC+AGG + chr5_1:6610025-6610044 Msa0714030:intron 30.0%
TTTACATAAACAGCTAAACC+GGG - chr5_1:6610089-6610108 None:intergenic 30.0%
GGTTTAGCTGTTTATGTAAA+TGG + chr5_1:6610089-6610108 Msa0714030:intron 30.0%
! GTTTATGTAATTTTCTCACC+TGG + chr5_1:6610111-6610130 Msa0714030:intron 30.0%
TGCTCAAATTTGTACTTTGA+TGG - chr5_1:6610475-6610494 None:intergenic 30.0%
ATATGTTGGAAAAACGATAC+AGG + chr5_1:6610522-6610541 Msa0714030:CDS 30.0%
ATTTCTGATAATAGGGAAAG+GGG - chr5_1:6610619-6610638 None:intergenic 30.0%
CATTTCTGATAATAGGGAAA+GGG - chr5_1:6610620-6610639 None:intergenic 30.0%
GGATAAAAATAGATTGCAAC+AGG + chr5_1:6610756-6610775 Msa0714030:intron 30.0%
! TCTTTCTCTTAGGTTTTTCA+TGG - chr5_1:6610912-6610931 None:intergenic 30.0%
TGAAAAACCTAAGAGAAAGA+TGG + chr5_1:6610912-6610931 Msa0714030:intron 30.0%
GAAAAACCTAAGAGAAAGAT+GGG + chr5_1:6610913-6610932 Msa0714030:intron 30.0%
TGAAATATAAACAAGAGAGG+TGG + chr5_1:6611153-6611172 Msa0714030:intron 30.0%
GAAATATAAACAAGAGAGGT+GGG + chr5_1:6611154-6611173 Msa0714030:intron 30.0%
CAAAATCACAGACACATATT+AGG - chr5_1:6611222-6611241 None:intergenic 30.0%
CAAAAAAGATGATGCTAACA+AGG + chr5_1:6611251-6611270 Msa0714030:intron 30.0%
AAAAAGATGATGCTAACAAG+GGG + chr5_1:6611253-6611272 Msa0714030:intron 30.0%
! TACAAATTTTGTGCTTCCAA+CGG - chr5_1:6611369-6611388 None:intergenic 30.0%
!!! TTTTCTTAAGGATTTGGTGA+TGG + chr5_1:6611528-6611547 Msa0714030:intron 30.0%
! AATTTTGTGGAAGATACTTG+AGG + chr5_1:6611629-6611648 Msa0714030:CDS 30.0%
! ATTTTGTGGAAGATACTTGA+GGG + chr5_1:6611630-6611649 Msa0714030:CDS 30.0%
! GACTCTCATATCTTGTTTAT+GGG + chr5_1:6611764-6611783 Msa0714030:CDS 30.0%
TCTCATATTTAGACCTCTTT+AGG - chr5_1:6611844-6611863 None:intergenic 30.0%
AATATGAGACAAGAATGACA+TGG + chr5_1:6611855-6611874 Msa0714030:exon 30.0%
AAACTAAGTGGATCAAATCA+TGG - chr5_1:6611943-6611962 None:intergenic 30.0%
!! GGTTTTGACATTGTAGATGA+AGG - chr5_1:6607260-6607279 None:intergenic 35.0%
GTTTGAAGATTGAATTGTGC+TGG - chr5_1:6607357-6607376 None:intergenic 35.0%
!!! TGAGAAGTTAGTTGGTTTTG+GGG - chr5_1:6607415-6607434 None:intergenic 35.0%
GATGAGAATGAGAAGTTAGT+TGG - chr5_1:6607423-6607442 None:intergenic 35.0%
ATTAAGATTTGGATGGGGAA+AGG - chr5_1:6607456-6607475 None:intergenic 35.0%
! AGTTCTTTAAGAAGTCGTTG+AGG - chr5_1:6607564-6607583 None:intergenic 35.0%
!!! CTTGGTGGTGATTTTGATTT+TGG - chr5_1:6607612-6607631 None:intergenic 35.0%
! TTTAGAATGTAACGTCTTGG+TGG - chr5_1:6607627-6607646 None:intergenic 35.0%
!!! GGTTTTAGAATGTAACGTCT+TGG - chr5_1:6607630-6607649 None:intergenic 35.0%
!!! AGTTTTTTGTCATCTAGTGG+GGG - chr5_1:6607651-6607670 None:intergenic 35.0%
!!! GAGTTTTTTGTCATCTAGTG+GGG - chr5_1:6607652-6607671 None:intergenic 35.0%
!!! CGAGTTTTTTGTCATCTAGT+GGG - chr5_1:6607653-6607672 None:intergenic 35.0%
! AAAGTATCAAACTGTTTGGC+AGG - chr5_1:6607855-6607874 None:intergenic 35.0%
!!! GCATTCTAGGTTGTTTTTCT+TGG + chr5_1:6607938-6607957 Msa0714030:CDS 35.0%
!! AGAGAGTTTATGGGTTGATT+GGG + chr5_1:6608039-6608058 Msa0714030:CDS 35.0%
! AGTTTTCTGTCTATGTCTCT+TGG + chr5_1:6608557-6608576 Msa0714030:intron 35.0%
TGTCTATGTCTCTTGGTATT+TGG + chr5_1:6608564-6608583 Msa0714030:intron 35.0%
ATAATGTGTGATATGTGCTC+AGG + chr5_1:6608602-6608621 Msa0714030:intron 35.0%
TTACTGTCTAAACAGGACAT+AGG + chr5_1:6608933-6608952 Msa0714030:intron 35.0%
CGAACACTTCAAAAAGAACA+CGG - chr5_1:6609172-6609191 None:intergenic 35.0%
!!! CGTGTTCTTTTTGAAGTGTT+CGG + chr5_1:6609170-6609189 Msa0714030:CDS 35.0%
!!! TCTTTTTGAAGTGTTCGGAA+TGG + chr5_1:6609175-6609194 Msa0714030:CDS 35.0%
GTGCAGTTGCTCATAATAAA+TGG - chr5_1:6609377-6609396 None:intergenic 35.0%
! ACTTTCACATTTTCCCTTTC+TGG + chr5_1:6609775-6609794 Msa0714030:intron 35.0%
! GTGCTTTAAATAGCCAGAAA+GGG - chr5_1:6609791-6609810 None:intergenic 35.0%
! TGTGCTTTAAATAGCCAGAA+AGG - chr5_1:6609792-6609811 None:intergenic 35.0%
! GGCTATTTAAAGCACAAATC+TGG + chr5_1:6609796-6609815 Msa0714030:intron 35.0%
ATTTAACATGAAGCCTGAGA+AGG - chr5_1:6609907-6609926 None:intergenic 35.0%
! TTTAGTGATAGTGATTGGCA+AGG + chr5_1:6609940-6609959 Msa0714030:intron 35.0%
! TTAGTGATAGTGATTGGCAA+GGG + chr5_1:6609941-6609960 Msa0714030:intron 35.0%
TGGTTTAGCTGTTTAGCAAT+CGG + chr5_1:6610131-6610150 Msa0714030:intron 35.0%
AAACTTGTCTAGTGCATATG+CGG + chr5_1:6610286-6610305 Msa0714030:intron 35.0%
AATCTCTCAAAGCAAAATCG+AGG - chr5_1:6610499-6610518 None:intergenic 35.0%
TTCGTTTGTGGAAATTCTTC+AGG + chr5_1:6610554-6610573 Msa0714030:intron 35.0%
GCATTTCTGATAATAGGGAA+AGG - chr5_1:6610621-6610640 None:intergenic 35.0%
GAATAGAAAAAAGTGAGGTG+AGG + chr5_1:6610675-6610694 Msa0714030:intron 35.0%
CGGAATTTCCACTTAGATAT+GGG + chr5_1:6610948-6610967 Msa0714030:intron 35.0%
! TTTTCATGCCCATATCTAAG+TGG - chr5_1:6610959-6610978 None:intergenic 35.0%
GAATAGCTGCAGTACAATTA+CGG + chr5_1:6611003-6611022 Msa0714030:intron 35.0%
AATAGCTGCAGTACAATTAC+GGG + chr5_1:6611004-6611023 Msa0714030:intron 35.0%
TTTGAAAGTTACTGAAGGTG+AGG + chr5_1:6611066-6611085 Msa0714030:intron 35.0%
AATAAAACGGTGAAGCTGTT+TGG - chr5_1:6611656-6611675 None:intergenic 35.0%
GCTGTTAATCAAGCTATTCA+CGG + chr5_1:6611742-6611761 Msa0714030:CDS 35.0%
! GGACTCTCATATCTTGTTTA+TGG + chr5_1:6611763-6611782 Msa0714030:CDS 35.0%
CAAGGGGATGGAAAAATAAA+AGG - chr5_1:6611910-6611929 None:intergenic 35.0%
!!! CTTTTATTTTTCCATCCCCT+TGG + chr5_1:6611908-6611927 Msa0714030:three_prime_UTR 35.0%
ATCATGGTAAGGAAAACCAA+GGG - chr5_1:6611927-6611946 None:intergenic 35.0%
AATCATGGTAAGGAAAACCA+AGG - chr5_1:6611928-6611947 None:intergenic 35.0%
AAGTGGATCAAATCATGGTA+AGG - chr5_1:6611938-6611957 None:intergenic 35.0%
! TGTACTCTACTTGTTAGAAC+TGG + chr5_1:6612013-6612032 Msa0714030:three_prime_UTR 35.0%
! GTACTCTACTTGTTAGAACT+GGG + chr5_1:6612014-6612033 Msa0714030:three_prime_UTR 35.0%
ATTGTAGATGAAGGGGTTTG+GGG - chr5_1:6607251-6607270 None:intergenic 40.0%
CATTGTAGATGAAGGGGTTT+GGG - chr5_1:6607252-6607271 None:intergenic 40.0%
ACATTGTAGATGAAGGGGTT+TGG - chr5_1:6607253-6607272 None:intergenic 40.0%
GAGGGGTTGTGAAGATTAAT+GGG - chr5_1:6607306-6607325 None:intergenic 40.0%
!! TTTTGGGGAGAGTGAAAAAG+AGG - chr5_1:6607400-6607419 None:intergenic 40.0%
!!! GCGAGTTTTTTGTCATCTAG+TGG - chr5_1:6607654-6607673 None:intergenic 40.0%
TGAACCATCAGACACATTAG+AGG + chr5_1:6607821-6607840 Msa0714030:CDS 40.0%
TCATCCTCTAATGTGTCTGA+TGG - chr5_1:6607828-6607847 None:intergenic 40.0%
GAACAAAGACGAAGCATGTT+AGG + chr5_1:6607910-6607929 Msa0714030:CDS 40.0%
ATATGTGCTGGAATTGGCAT+TGG + chr5_1:6607965-6607984 Msa0714030:CDS 40.0%
! TGGCTGAATTCTTTTTGCAG+AGG + chr5_1:6607985-6608004 Msa0714030:CDS 40.0%
!! GAGAGAGTTTATGGGTTGAT+TGG + chr5_1:6608038-6608057 Msa0714030:CDS 40.0%
!! AGTTTATGGGTTGATTGGGA+AGG + chr5_1:6608043-6608062 Msa0714030:CDS 40.0%
! CTAGCAGCTTTAATCCACTT+AGG - chr5_1:6608077-6608096 None:intergenic 40.0%
ATTGTGAGGAGAGATAGAGA+AGG + chr5_1:6608137-6608156 Msa0714030:CDS 40.0%
! AGCTAGCTTACTGTCTAAAC+AGG + chr5_1:6608926-6608945 Msa0714030:intron 40.0%
! TCTATCGTAGGTCGGTATTT+TGG + chr5_1:6609099-6609118 Msa0714030:intron 40.0%
! CTATCGTAGGTCGGTATTTT+GGG + chr5_1:6609100-6609119 Msa0714030:intron 40.0%
!!! TCGGTATTTTGGGCTTTGTT+TGG + chr5_1:6609110-6609129 Msa0714030:CDS 40.0%
!!! CGGTATTTTGGGCTTTGTTT+GGG + chr5_1:6609111-6609130 Msa0714030:CDS 40.0%
!!! GGTATTTTGGGCTTTGTTTG+GGG + chr5_1:6609112-6609131 Msa0714030:CDS 40.0%
!! GGGGCAATCTATCTTTGTTT+TGG + chr5_1:6609131-6609150 Msa0714030:CDS 40.0%
AAAAGAACACGGTAGACTTC+TGG - chr5_1:6609161-6609180 None:intergenic 40.0%
ATGCTCTGTTTACTCATCCA+AGG + chr5_1:6609558-6609577 Msa0714030:CDS 40.0%
TCCAAGTGCTCTCATAACTT+GGG - chr5_1:6609654-6609673 None:intergenic 40.0%
ATCCAAGTGCTCTCATAACT+TGG - chr5_1:6609655-6609674 None:intergenic 40.0%
GTATCACTGTAGGTGTAACA+AGG - chr5_1:6610002-6610021 None:intergenic 40.0%
GATTGCTAAACAGCTAAACC+AGG - chr5_1:6610132-6610151 None:intergenic 40.0%
TCATGTAGTGAACTGCACAA+AGG - chr5_1:6610173-6610192 None:intergenic 40.0%
!! TGAGTTGAGAGGTTCTAAAG+CGG - chr5_1:6610206-6610225 None:intergenic 40.0%
!! CACTTAGAACTTGAGTTGAG+AGG - chr5_1:6610217-6610236 None:intergenic 40.0%
AACTTGTCTAGTGCATATGC+GGG + chr5_1:6610287-6610306 Msa0714030:intron 40.0%
! CTTCTAAAAAAAGGGCAACC+CGG - chr5_1:6610325-6610344 None:intergenic 40.0%
! AGGTACTGTTCTTTCGTTTG+TGG + chr5_1:6610542-6610561 Msa0714030:intron 40.0%
AAAAAAGTGAGGTGAGGAGA+CGG + chr5_1:6610681-6610700 Msa0714030:intron 40.0%
AGATCAGGGTCAGGAAATAA+AGG - chr5_1:6610840-6610859 None:intergenic 40.0%
GCGGAATTTCCACTTAGATA+TGG + chr5_1:6610947-6610966 Msa0714030:intron 40.0%
TGCATCAAGCCTCAAAAACA+TGG - chr5_1:6611183-6611202 None:intergenic 40.0%
! ATGAAGCATTTAGATGCTCC+TGG + chr5_1:6611565-6611584 Msa0714030:CDS 40.0%
! TGAAGCATTTAGATGCTCCT+GGG + chr5_1:6611566-6611585 Msa0714030:CDS 40.0%
AGCTTGATTAACAGCTGTTG+TGG - chr5_1:6611737-6611756 None:intergenic 40.0%
! ACATGGCAATAGAGTACTCT+CGG + chr5_1:6611872-6611891 Msa0714030:three_prime_UTR 40.0%
TCATGGTAAGGAAAACCAAG+GGG - chr5_1:6611926-6611945 None:intergenic 40.0%
ATCTCTGTTCCGGTTATCTA+AGG - chr5_1:6612042-6612061 None:intergenic 40.0%
ATGTATCCTCATCTCTGTTC+CGG - chr5_1:6612052-6612071 None:intergenic 40.0%
TTGTAGATGAAGGGGTTTGG+GGG - chr5_1:6607250-6607269 None:intergenic 45.0%
GGAGGGGTTGTGAAGATTAA+TGG - chr5_1:6607307-6607326 None:intergenic 45.0%
! GTGCTGGGAAATGTTGATAG+TGG - chr5_1:6607341-6607360 None:intergenic 45.0%
TGTAACTGCGAGAACGTGAA+GGG - chr5_1:6607505-6607524 None:intergenic 45.0%
TTGTAACTGCGAGAACGTGA+AGG - chr5_1:6607506-6607525 None:intergenic 45.0%
GTCTTTGTTCTCTCACACGA+AGG - chr5_1:6607900-6607919 None:intergenic 45.0%
AAGACGAAGCATGTTAGGTC+TGG + chr5_1:6607915-6607934 Msa0714030:CDS 45.0%
AGACGAAGCATGTTAGGTCT+GGG + chr5_1:6607916-6607935 Msa0714030:CDS 45.0%
ATGTTAGGTCTGGGCATTCT+AGG + chr5_1:6607925-6607944 Msa0714030:CDS 45.0%
TTTCTTGGGGCAATATGTGC+TGG + chr5_1:6607953-6607972 Msa0714030:CDS 45.0%
!!! TCTTTTTGCAGAGGTATCCG+AGG + chr5_1:6607994-6608013 Msa0714030:CDS 45.0%
!!! CTTTTTGCAGAGGTATCCGA+GGG + chr5_1:6607995-6608014 Msa0714030:CDS 45.0%
CCATAAACTCTCTCCCTCAT+CGG - chr5_1:6608032-6608051 None:intergenic 45.0%
CGATGAGGGAGAGAGTTTAT+GGG + chr5_1:6608030-6608049 Msa0714030:CDS 45.0%
GGAAGGAGAATTTGCCTAAG+TGG + chr5_1:6608060-6608079 Msa0714030:CDS 45.0%
GCGCAAACAACTTGAAGATG+TGG + chr5_1:6609229-6609248 Msa0714030:CDS 45.0%
! TGAGTAAACAGAGCATCTGC+AGG - chr5_1:6609554-6609573 None:intergenic 45.0%
! ACACATGCTCTAAACAGCCT+TGG - chr5_1:6609578-6609597 None:intergenic 45.0%
CCAAGTGCTCTCATAACTTG+GGG - chr5_1:6609653-6609672 None:intergenic 45.0%
TTCCAGAAATTACCGAAGCC+AGG + chr5_1:6609699-6609718 Msa0714030:CDS 45.0%
TTCCTGGCTTCGGTAATTTC+TGG - chr5_1:6609704-6609723 None:intergenic 45.0%
AAGCTCTATGTTCCTGGCTT+CGG - chr5_1:6609714-6609733 None:intergenic 45.0%
AAGTCCAAGCTCTATGTTCC+TGG - chr5_1:6609720-6609739 None:intergenic 45.0%
AGGAACATAGAGCTTGGACT+TGG + chr5_1:6609719-6609738 Msa0714030:CDS 45.0%
GCAGAAAACAAAGCTGCAAG+TGG - chr5_1:6610450-6610469 None:intergenic 45.0%
AAAAAGTGAGGTGAGGAGAC+GGG + chr5_1:6610682-6610701 Msa0714030:intron 45.0%
! TCACATCTAAGATCAGGGTC+AGG - chr5_1:6610849-6610868 None:intergenic 45.0%
AACCTAAGAGAAAGATGGGC+AGG + chr5_1:6610917-6610936 Msa0714030:intron 45.0%
ACCTAAGAGAAAGATGGGCA+GGG + chr5_1:6610918-6610937 Msa0714030:intron 45.0%
AAGATGGGCAGGGAATTATG+CGG + chr5_1:6610928-6610947 Msa0714030:intron 45.0%
CTGCAGTACAATTACGGGAA+GGG + chr5_1:6611009-6611028 Msa0714030:intron 45.0%
CAATTACGGGAAGGGATGTT+TGG + chr5_1:6611017-6611036 Msa0714030:intron 45.0%
! TGGTTTGAGACTTTGAGCTG+TGG + chr5_1:6611099-6611118 Msa0714030:intron 45.0%
! ATGATGCTAACAAGGGGCAT+CGG + chr5_1:6611259-6611278 Msa0714030:intron 45.0%
TATTACCGACGAGACAGAGA+AGG + chr5_1:6611412-6611431 Msa0714030:intron 45.0%
ATTACCGACGAGACAGAGAA+GGG + chr5_1:6611413-6611432 Msa0714030:intron 45.0%
ATTTAGATGCTCCTGGGTTG+TGG + chr5_1:6611572-6611591 Msa0714030:CDS 45.0%
GATTAACAGCTGTTGTGGCT+GGG - chr5_1:6611732-6611751 None:intergenic 45.0%
TGATTAACAGCTGTTGTGGC+TGG - chr5_1:6611733-6611752 None:intergenic 45.0%
TGAGCAGATTCAGCCTAAAG+AGG + chr5_1:6611828-6611847 Msa0714030:CDS 45.0%
AACTGGGCTCCTTAGATAAC+CGG + chr5_1:6612030-6612049 Msa0714030:three_prime_UTR 45.0%
AGATAACCGGAACAGAGATG+AGG + chr5_1:6612043-6612062 Msa0714030:three_prime_UTR 45.0%
ACTGCTTGTTCTACTCTCCA+TGG + chr5_1:6612077-6612096 Msa0714030:three_prime_UTR 45.0%
!!! GTGTTGCTGGGTTTTGGACA+GGG - chr5_1:6607223-6607242 None:intergenic 50.0%
!!! TGTGTTGCTGGGTTTTGGAC+AGG - chr5_1:6607224-6607243 None:intergenic 50.0%
!! GGGTTTGTGTTGCTGGGTTT+TGG - chr5_1:6607229-6607248 None:intergenic 50.0%
! TTTGGGGGGTTTGTGTTGCT+GGG - chr5_1:6607235-6607254 None:intergenic 50.0%
TGTAGATGAAGGGGTTTGGG+GGG - chr5_1:6607249-6607268 None:intergenic 50.0%
TTGGATGGGGAAAGGAGAGA+AGG - chr5_1:6607448-6607467 None:intergenic 50.0%
AAGGGGGTAGTTTCGGGATT+TGG - chr5_1:6607487-6607506 None:intergenic 50.0%
AACGTGAAGGGGGTAGTTTC+GGG - chr5_1:6607493-6607512 None:intergenic 50.0%
GAACGTGAAGGGGGTAGTTT+CGG - chr5_1:6607494-6607513 None:intergenic 50.0%
TAACTGCGAGAACGTGAAGG+GGG - chr5_1:6607503-6607522 None:intergenic 50.0%
GTAACTGCGAGAACGTGAAG+GGG - chr5_1:6607504-6607523 None:intergenic 50.0%
CTCACACGAAGGATGCTGAA+AGG - chr5_1:6607889-6607908 None:intergenic 50.0%
GGGGCAATATGTGCTGGAAT+TGG + chr5_1:6607959-6607978 Msa0714030:CDS 50.0%
CCGATGAGGGAGAGAGTTTA+TGG + chr5_1:6608029-6608048 Msa0714030:CDS 50.0%
GTGCTCAGGATGTTGAAGAC+TGG + chr5_1:6608616-6608635 Msa0714030:intron 50.0%
CGGAATGGATCCAGATGATG+AGG + chr5_1:6609190-6609209 Msa0714030:CDS 50.0%
ATGATGAGGATTGCCAGCCT+AGG + chr5_1:6609204-6609223 Msa0714030:CDS 50.0%
TGATGAGGATTGCCAGCCTA+GGG + chr5_1:6609205-6609224 Msa0714030:CDS 50.0%
! TCAAGTTGTTTGCGCTCCCT+AGG - chr5_1:6609224-6609243 None:intergenic 50.0%
! GTAAACAGAGCATCTGCAGG+AGG - chr5_1:6609551-6609570 None:intergenic 50.0%
! TTTAGAGCATGTGTTCCCCC+TGG + chr5_1:6609584-6609603 Msa0714030:CDS 50.0%
TCTGAATCGATGCATGCCAG+GGG - chr5_1:6609603-6609622 None:intergenic 50.0%
CTCTGAATCGATGCATGCCA+GGG - chr5_1:6609604-6609623 None:intergenic 50.0%
!! CCCCAAGTTATGAGAGCACT+TGG + chr5_1:6609650-6609669 Msa0714030:CDS 50.0%
GAAGCCAGGAACATAGAGCT+TGG + chr5_1:6609713-6609732 Msa0714030:CDS 50.0%
AGAGCTTGGACTTGGATTGC+AGG + chr5_1:6609727-6609746 Msa0714030:CDS 50.0%
TGGCCTCTCTTGCTAGAGTA+CGG + chr5_1:6609816-6609835 Msa0714030:intron 50.0%
AAAAGTGAGGTGAGGAGACG+GGG + chr5_1:6610683-6610702 Msa0714030:intron 50.0%
TCCCTGCCCATCTTTCTCTT+AGG - chr5_1:6610922-6610941 None:intergenic 50.0%
GCTGCAGTACAATTACGGGA+AGG + chr5_1:6611008-6611027 Msa0714030:intron 50.0%
GTTACTGAAGGTGAGGCTTG+AGG + chr5_1:6611073-6611092 Msa0714030:intron 50.0%
GAAGGTGAGGCTTGAGGTAT+TGG + chr5_1:6611079-6611098 Msa0714030:intron 50.0%
!! GGTGGGTGACCATGTTTTTG+AGG + chr5_1:6611171-6611190 Msa0714030:intron 50.0%
!! TGATGCTAACAAGGGGCATC+GGG + chr5_1:6611260-6611279 Msa0714030:intron 50.0%
AAACCGCTTATGAGCGCAAC+CGG + chr5_1:6611695-6611714 Msa0714030:CDS 50.0%
GGTAAGGAAAACCAAGGGGA+TGG - chr5_1:6611922-6611941 None:intergenic 50.0%
ACTCTCCATGGCTCAGATCA+TGG + chr5_1:6612089-6612108 Msa0714030:three_prime_UTR 50.0%
TTGCTCCATGATCTGAGCCA+TGG - chr5_1:6612097-6612116 None:intergenic 50.0%
!!! TGCTGGGTTTTGGACAGGGT+TGG - chr5_1:6607219-6607238 None:intergenic 55.0%
GTTTGGGGGGTTTGTGTTGC+TGG - chr5_1:6607236-6607255 None:intergenic 55.0%
GATGGGGAAAGGAGAGAAGG+AGG - chr5_1:6607445-6607464 None:intergenic 55.0%
GCATTGTTAAGGCGCGACGA+AGG - chr5_1:6607741-6607760 None:intergenic 55.0%
CTCGTAGCGAAACAAGCGCT+TGG + chr5_1:6607789-6607808 Msa0714030:CDS 55.0%
AGGTATCCGAGGGAATTGCC+TGG + chr5_1:6608005-6608024 Msa0714030:CDS 55.0%
ATCGGACCAGGCAATTCCCT+CGG - chr5_1:6608014-6608033 None:intergenic 55.0%
GGAATTGCCTGGTCCGATGA+GGG + chr5_1:6608016-6608035 Msa0714030:CDS 55.0%
GGCTGGCAATCCTCATCATC+TGG - chr5_1:6609203-6609222 None:intergenic 55.0%
CTGAATCGATGCATGCCAGG+GGG - chr5_1:6609602-6609621 None:intergenic 55.0%
CCTCTGAATCGATGCATGCC+AGG - chr5_1:6609605-6609624 None:intergenic 55.0%
!! CCTGGCATGCATCGATTCAG+AGG + chr5_1:6609602-6609621 Msa0714030:CDS 55.0%
CAGCCGTACTCTAGCAAGAG+AGG - chr5_1:6609822-6609841 None:intergenic 55.0%
CTTGATGCAGAGCGAGACAC+AGG + chr5_1:6611194-6611213 Msa0714030:intron 55.0%
GTTTCGCCTTCCAGAAGCTC+GGG - chr5_1:6611336-6611355 None:intergenic 55.0%
GGTTTCGCCTTCCAGAAGCT+CGG - chr5_1:6611337-6611356 None:intergenic 55.0%
CGAAACCTTATGCGAGCCGT+TGG + chr5_1:6611350-6611369 Msa0714030:intron 55.0%
TGCTTCCAACGGCTCGCATA+AGG - chr5_1:6611358-6611377 None:intergenic 55.0%
CTGTCCCTTCTCTGTCTCGT+CGG - chr5_1:6611420-6611439 None:intergenic 55.0%
TTCTCTTGCAGCCACAACCC+AGG - chr5_1:6611586-6611605 None:intergenic 55.0%
TCTCCGGTTGCGCTCATAAG+CGG - chr5_1:6611701-6611720 None:intergenic 55.0%
CTTATGAGCGCAACCGGAGA+CGG + chr5_1:6611701-6611720 Msa0714030:CDS 55.0%
GGGAATTGCCTGGTCCGATG+AGG + chr5_1:6608015-6608034 Msa0714030:CDS 60.0%
ACTCTCTCCCTCATCGGACC+AGG - chr5_1:6608026-6608045 None:intergenic 60.0%
GTTGTTTGCGCTCCCTAGGC+TGG - chr5_1:6609220-6609239 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr5_1:6610303-6610322 Msa0714030:intron 60.0%
! GGCATCGGGACAGATGCTGA+GGG + chr5_1:6611274-6611293 Msa0714030:intron 60.0%
GCATCGGGACAGATGCTGAG+GGG + chr5_1:6611275-6611294 Msa0714030:intron 60.0%
CATCGGGACAGATGCTGAGG+GGG + chr5_1:6611276-6611295 Msa0714030:intron 60.0%
CTGAGTGTCTCCCGAGCTTC+TGG + chr5_1:6611323-6611342 Msa0714030:intron 60.0%
GTGTCTCCCGAGCTTCTGGA+AGG + chr5_1:6611327-6611346 Msa0714030:intron 60.0%
TGGCTGGGTTTCTCCGTCTC+CGG - chr5_1:6611717-6611736 None:intergenic 60.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr5_1:6610304-6610323 Msa0714030:intron 65.0%
TGAGGTGAGGAGACGGGGAC+TGG + chr5_1:6610688-6610707 Msa0714030:intron 65.0%
GAGGTGAGGAGACGGGGACT+GGG + chr5_1:6610689-6610708 Msa0714030:intron 65.0%
GAGACGGGGACTGGGACTCA+TGG + chr5_1:6610697-6610716 Msa0714030:intron 65.0%
!! GGGCATCGGGACAGATGCTG+AGG + chr5_1:6611273-6611292 Msa0714030:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6607214 6612206 6607214 ID=Msa0714030;Name=Msa0714030
chr5_1 mRNA 6607214 6612206 6607214 ID=Msa0714030-mRNA-1;Parent=Msa0714030;Name=Msa0714030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=170|0.75|0.8|1|1|1|5|351|539
chr5_1 exon 6607214 6608168 6607214 ID=Msa0714030-mRNA-1:exon:2745;Parent=Msa0714030-mRNA-1
chr5_1 exon 6609109 6609337 6609109 ID=Msa0714030-mRNA-1:exon:2746;Parent=Msa0714030-mRNA-1
chr5_1 exon 6609548 6609748 6609548 ID=Msa0714030-mRNA-1:exon:2747;Parent=Msa0714030-mRNA-1
chr5_1 exon 6610457 6610543 6610457 ID=Msa0714030-mRNA-1:exon:2748;Parent=Msa0714030-mRNA-1
chr5_1 exon 6611538 6612206 6611538 ID=Msa0714030-mRNA-1:exon:2749;Parent=Msa0714030-mRNA-1
chr5_1 five_prime_UTR 6607214 6607383 6607214 ID=Msa0714030-mRNA-1:five_prime_utr;Parent=Msa0714030-mRNA-1
chr5_1 CDS 6607384 6608168 6607384 ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1
chr5_1 CDS 6609109 6609337 6609109 ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1
chr5_1 CDS 6609548 6609748 6609548 ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1
chr5_1 CDS 6610457 6610543 6610457 ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1
chr5_1 CDS 6611538 6611855 6611538 ID=Msa0714030-mRNA-1:cds;Parent=Msa0714030-mRNA-1
chr5_1 three_prime_UTR 6611856 6612206 6611856 ID=Msa0714030-mRNA-1:three_prime_utr;Parent=Msa0714030-mRNA-1
Gene Sequence

>Msa0714030

ATGGAACTCTCATCCTCTTTTTCACTCTCCCCAAAACCAACTAACTTCTCATTCTCATCCTCCTTCTCTCCTTTCCCCATCCAAATCTTAATCAAAAACACCAAATCCCGAAACTACCCCCTTCACGTTCTCGCAGTTACAATAGACCCAACAAAAGACTTCCCTAAAAATAACAATCCTCAACGACTTCTTAAAGAACTAGCAGAACGCAAGAAGATCACTAACCCAAAATCAAAATCACCACCAAGACGTTACATTCTAAAACCCCCACTAGATGACAAAAAACTCGCAGAAAGATTTCTCAACAGTCCACAGCTCTCATTAAAATCATTCCCATTATTAAGTTCTTGTCTACCTTCGTCGCGCCTTAACAATGCCGATAAATTATGGATAGATGAGTATTTACTCGTAGCGAAACAAGCGCTTGGATACTCACTTGAACCATCAGACACATTAGAGGATGATAATCCTGCCAAACAGTTTGATACTTTGTTGTATTTGGCCTTTCAGCATCCTTCGTGTGAGAGAACAAAGACGAAGCATGTTAGGTCTGGGCATTCTAGGTTGTTTTTCTTGGGGCAATATGTGCTGGAATTGGCATTGGCTGAATTCTTTTTGCAGAGGTATCCGAGGGAATTGCCTGGTCCGATGAGGGAGAGAGTTTATGGGTTGATTGGGAAGGAGAATTTGCCTAAGTGGATTAAAGCTGCTAGTTTGCAGAATTTGATATTTCCTTATGATAATATGGATAAGATTGTGAGGAGAGATAGAGAAGGACCTGTCAAGTCGGTATTTTGGGCTTTGTTTGGGGCAATCTATCTTTGTTTTGGTCTTCCAGAAGTCTACCGTGTTCTTTTTGAAGTGTTCGGAATGGATCCAGATGATGAGGATTGCCAGCCTAGGGAGCGCAAACAACTTGAAGATGTGGATTATGTATCTGCTGAGTTTGAAAACAAGCTAAACTGGCAAGATATTGTTGCTTATAAGGCAAGCTATACATATCTTCTGTTAAGACCTCCTGCAGATGCTCTGTTTACTCATCCAAGGCTGTTTAGAGCATGTGTTCCCCCTGGCATGCATCGATTCAGAGGAAATATATGGGATTATGATAGCAGACCCCAAGTTATGAGAGCACTTGGATATCCATTAGAAATGACAGACAGAATTCCAGAAATTACCGAAGCCAGGAACATAGAGCTTGGACTTGGATTGCAGCTTTGTTTTCTGCATCCATCAAAGTACAAATTTGAGCATCCTCGATTTTGCTTTGAGAGATTAGAATATGTTGGAAAAACGATACAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCATTTAGATGCTCCTGGGTTGTGGCTGCAAGAGAAACATCGTCGCATTCTTCTGAACAAATTTTGTGGAAGATACTTGAGGGCCAAACAGCTTCACCGTTTTATTATATATGATGATAATGTTCAAACCGCTTATGAGCGCAACCGGAGACGGAGAAACCCAGCCACAACAGCTGTTAATCAAGCTATTCACGGACTCTCATATCTTGTTTATGGGAAACGTGATGTGAGACGTCTGATGTTTGAGTTTTTTGACTTTGAGCAGATTCAGCCTAAAGAGGTCTAA

Protein sequence

>Msa0714030

MELSSSFSLSPKPTNFSFSSSFSPFPIQILIKNTKSRNYPLHVLAVTIDPTKDFPKNNNPQRLLKELAERKKITNPKSKSPPRRYILKPPLDDKKLAERFLNSPQLSLKSFPLLSSCLPSSRLNNADKLWIDEYLLVAKQALGYSLEPSDTLEDDNPAKQFDTLLYLAFQHPSCERTKTKHVRSGHSRLFFLGQYVLELALAEFFLQRYPRELPGPMRERVYGLIGKENLPKWIKAASLQNLIFPYDNMDKIVRRDREGPVKSVFWALFGAIYLCFGLPEVYRVLFEVFGMDPDDEDCQPRERKQLEDVDYVSAEFENKLNWQDIVAYKASYTYLLLRPPADALFTHPRLFRACVPPGMHRFRGNIWDYDSRPQVMRALGYPLEMTDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGKTIQDLVMAERLLMKHLDAPGLWLQEKHRRILLNKFCGRYLRAKQLHRFIIYDDNVQTAYERNRRRRNPATTAVNQAIHGLSYLVYGKRDVRRLMFEFFDFEQIQPKEV*