AlfalfaGEDB | Msa0075210

M. sativa cultivar zhongmu-4 / Msa0075210

KEGG: K01900
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017076 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072521 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564
PFAM: PF08442.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075210	sp\|Q6K9N6\|SUCB_ORYSJ	86.158	419	58	0	1	419	1	419	0.0	749

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075210	A0A072VL01	99.525	421	2	0	1	421	1	421	0.0	848

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0051970	Msa0075210	0.805867	1.084739e-49	-8.615850e-47
Msa0075210	Msa0122870	0.999400	1.007000e-308	-8.615850e-47
Msa0075210	Msa0127530	0.827672	1.374457e-54	-8.615850e-47
Msa0075210	Msa0167400	0.862217	5.926742e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075210	MtrunA17_Chr1g0183491	99.525	421	2	0	1	421	1	421	0.0	848

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075210	AT2G20420.1	85.885	418	59	0	2	419	1	418	0.0	747

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Find 105 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAGTCTGTTGAACA+TGG	0.620909	1_2:-50332943	Msa0075210:three_prime_UTR
AAAATTCTAGGGTGTAGTAT+TGG	0.538094	1_2:-50338165	Msa0075210:five_prime_UTR
AAATAGTGTTGTAACTAAAC+TGG	0.376409	1_2:+50333169	None:intergenic
AAATGCTTTAATAGCCACTA+CGG	0.558659	1_2:+50333086	None:intergenic
AACACAAGAGGATCCTCGAG+AGG	0.699355	1_2:-50335333	Msa0075210:intron
AACCGCTGATGACAAAGTGA+AGG	0.632167	1_2:-50334001	Msa0075210:CDS
AACCTAATTGAACAATAATG+TGG	0.581936	1_2:+50333045	None:intergenic
AAGGCACCAATGTTGATCAA+GGG	0.623746	1_2:-50333440	Msa0075210:CDS
AAGGCAGATTTAAATTATAT+TGG	0.212296	1_2:-50334427	Msa0075210:CDS
AAGTGGTATGGCATTAATAA+CGG	0.545339	1_2:-50333268	Msa0075210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAGGTCTTTCTTCAACTA+TGG	+	chr1_2:50332820-50332839	None:intergenic	30.0%
AATTATGGTCTACAGAATCA+TGG	+	chr1_2:50333250-50333269	None:intergenic	30.0%
TTGAACTGAGAAACAACAAA+GGG	+	chr1_2:50333727-50333746	None:intergenic	30.0%
ATTGAACTGAGAAACAACAA+AGG	+	chr1_2:50333728-50333747	None:intergenic	30.0%
ATGGACATGAAATGAAAACA+AGG	+	chr1_2:50333754-50333773	None:intergenic	30.0%
ATACTAGTTACAAAACAGTC+AGG	-	chr1_2:50333948-50333967	Msa0075210:CDS	30.0%
TGTAAAGAAAAAAAGTCCCA+CGG	+	chr1_2:50334182-50334201	None:intergenic	30.0%
TTTACATGCAATATGTCTGT+CGG	-	chr1_2:50334196-50334215	Msa0075210:intron	30.0%
AACCATTTATGGTATTTGGT+AGG	-	chr1_2:50334545-50334564	Msa0075210:intron	30.0%
CATAGAATATATATGCAAGG+GGG	-	chr1_2:50334755-50334774	Msa0075210:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	50332744	50338209	50332744	ID=Msa0075210;Name=Msa0075210
chr1_2	mRNA	50332744	50338209	50332744	ID=Msa0075210-mRNA-1;Parent=Msa0075210;Name=Msa0075210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=154\|1\|1\|1\|1\|1\|12\|474\|421
chr1_2	exon	50332744	50333292	50332744	ID=Msa0075210-mRNA-1:exon:15513;Parent=Msa0075210-mRNA-1
chr1_2	exon	50333425	50333496	50333425	ID=Msa0075210-mRNA-1:exon:15512;Parent=Msa0075210-mRNA-1
chr1_2	exon	50333924	50334046	50333924	ID=Msa0075210-mRNA-1:exon:15511;Parent=Msa0075210-mRNA-1
chr1_2	exon	50334297	50334461	50334297	ID=Msa0075210-mRNA-1:exon:15510;Parent=Msa0075210-mRNA-1
chr1_2	exon	50335334	50335468	50335334	ID=Msa0075210-mRNA-1:exon:15509;Parent=Msa0075210-mRNA-1
chr1_2	exon	50335560	50335712	50335560	ID=Msa0075210-mRNA-1:exon:15508;Parent=Msa0075210-mRNA-1
chr1_2	exon	50335787	50335861	50335787	ID=Msa0075210-mRNA-1:exon:15507;Parent=Msa0075210-mRNA-1
chr1_2	exon	50336041	50336118	50336041	ID=Msa0075210-mRNA-1:exon:15506;Parent=Msa0075210-mRNA-1
chr1_2	exon	50336958	50337022	50336958	ID=Msa0075210-mRNA-1:exon:15505;Parent=Msa0075210-mRNA-1
chr1_2	exon	50337242	50337353	50337242	ID=Msa0075210-mRNA-1:exon:15504;Parent=Msa0075210-mRNA-1
chr1_2	exon	50337712	50337822	50337712	ID=Msa0075210-mRNA-1:exon:15503;Parent=Msa0075210-mRNA-1
chr1_2	exon	50337954	50338209	50337954	ID=Msa0075210-mRNA-1:exon:15502;Parent=Msa0075210-mRNA-1
chr1_2	five_prime_UTR	50338056	50338209	50338056	ID=Msa0075210-mRNA-1:five_prime_utr;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50337954	50338055	50337954	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50337712	50337822	50337712	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50337242	50337353	50337242	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50336958	50337022	50336958	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50336041	50336118	50336041	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50335787	50335861	50335787	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50335560	50335712	50335560	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50335334	50335468	50335334	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50334297	50334461	50334297	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50333924	50334046	50333924	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50333425	50333496	50333425	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	CDS	50333218	50333292	50333218	ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1
chr1_2	three_prime_UTR	50332744	50333217	50332744	ID=Msa0075210-mRNA-1:three_prime_utr;Parent=Msa0075210-mRNA-1

Gene Sequence

>Msa0075210

ATGGTCAGAGGATCGCTCAACAAACTCGTCTCTCGCTCTCTCTCCGTCGCCGGCACATGGCAGAATCAACAGCTCCGCCGTCTCAACATCCACGAGTATCAGGGTGCTGAATTGATGAGCAAATATGGAGTTAACGTTCCCAGAGGCGTAGCGGTTTCCTCAGTTGAAGAAGTCAGAAAAGCCATCAAAGATGCATTCCCCGGTCAAAACGAGTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGACGAGGATTGGGGACTTTCAAAAGTGGTTTTCAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGATATAGCTGGGAAGATGCTTGGGCAGATACTAGTTACAAAACAGTCAGGTCCTCAGGGAAAAATTGTTAGCAAGGTTTACTTGTGTGAGAAGCTGTCGCTTGTGAATGAAATGTACTTTGCTATAACTCTGGATCGTAAGACTGCTGGTCCGCTTATTATTGCTTGTAAAAAGGGAGGAACCAGCATTGAAGACCTTGCAGAAAAATTTCCAGACATGATTATTAAGGTACCTGTTGATGTTTTTGAAGGACTTACTGATGAAGATGCTGCAAAGGTTGTTGATGGTTTGGCTCCTAAAGTGGCTGATAGAAATCAATCAATTGAACAAGTGAAGAATTTGTATAAACTTTTTGTTGATTCTGACTGCACTCTTTTGGAAATCAATCCCATGGCGGAGACAGCTGATAACCAACTAGTAGCTGCTGATGCTAAGTTGAATTTCGATGATAATGCCGCATATCGCCAGAAAGAGATATTCAAACTTCGTGATACAACACAAGAGGATCCTCGAGAGGTGGCTGCTGCAAAGGCAGATTTAAATTATATTGGGTTAGATGGAGAAATTGGCTGCATGGTGAATGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAGTTGCATGGCGGTACTCCTGCCAATTTTCTGGATGTCGGTGGTGCTGCCTCTGAAAACCAGGTGGTTGAAGCATTTAAAATATTAACCGCTGATGACAAAGTGAAGGCGATTTTGGTGAACATCTTTGGTGGTATCATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAGCAGGTTGCACTAAAAGTGCCAGTAATAGTTCGTCTTGAAGGCACCAATGTTGATCAAGGGAAAAGCATTCTGAAGGAAAGTGGTATGGCATTAATAACGGCTGAAGATTTGGATGATGCAGCTCAAAAAGCAGTGAAAGCTTACAAATGA

Protein sequence

>Msa0075210

MVRGSLNKLVSRSLSVAGTWQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEEVRKAIKDAFPGQNELVVKSQILAGGRGLGTFKSGFQGGVHIVKTDQVEDIAGKMLGQILVTKQSGPQGKIVSKVYLCEKLSLVNEMYFAITLDRKTAGPLIIACKKGGTSIEDLAEKFPDMIIKVPVDVFEGLTDEDAAKVVDGLAPKVADRNQSIEQVKNLYKLFVDSDCTLLEINPMAETADNQLVAADAKLNFDDNAAYRQKEIFKLRDTTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGAASENQVVEAFKILTADDKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVIVRLEGTNVDQGKSILKESGMALITAEDLDDAAQKAVKAYK*