Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0075210 | sp|Q6K9N6|SUCB_ORYSJ | 86.158 | 419 | 58 | 0 | 1 | 419 | 1 | 419 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0075210 | A0A072VL01 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051970 | Msa0075210 | 0.805867 | 1.084739e-49 | -8.615850e-47 |
| Msa0075210 | Msa0122870 | 0.999400 | 1.007000e-308 | -8.615850e-47 |
| Msa0075210 | Msa0127530 | 0.827672 | 1.374457e-54 | -8.615850e-47 |
| Msa0075210 | Msa0167400 | 0.862217 | 5.926742e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0075210 | MtrunA17_Chr1g0183491 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0075210 | AT2G20420.1 | 85.885 | 418 | 59 | 0 | 2 | 419 | 1 | 418 | 0.0 | 747 |
Find 105 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGAAAGTGTTTACTTAT+TGG | 0.141400 | 1_2:+50333063 | None:intergenic |
| TTCAAATTTGAATGTTTAAT+TGG | 0.150084 | 1_2:-50332856 | Msa0075210:three_prime_UTR |
| GAAGTTTGAATATCTCTTTC+TGG | 0.175075 | 1_2:+50335363 | None:intergenic |
| GACCATTGTTGTTAGGGTTT+TGG | 0.196821 | 1_2:+50338050 | None:intergenic |
| GCTTATTATTGCTTGTAAAA+AGG | 0.205295 | 1_2:-50335840 | Msa0075210:CDS |
| AAGGCAGATTTAAATTATAT+TGG | 0.212296 | 1_2:-50334427 | Msa0075210:CDS |
| TATAGGTCTTTCTTCAACTA+TGG | 0.221689 | 1_2:+50338114 | None:intergenic |
| TGAGGATCTTCAATTTATTT+TGG | 0.228148 | 1_2:-50332888 | Msa0075210:three_prime_UTR |
| ATTGGGTTAGATGGAGAAAT+TGG | 0.248780 | 1_2:-50334409 | Msa0075210:CDS |
| TTAAATTATATTGGGTTAGA+TGG | 0.259385 | 1_2:-50334418 | Msa0075210:CDS |
| ATTTCCAGACATGATTATTA+AGG | 0.260056 | 1_2:-50335786 | Msa0075210:intron |
| TGATTCTGACTGCACTCTTT+TGG | 0.271327 | 1_2:-50335562 | Msa0075210:CDS |
| TTCCACATTATTGTTCAATT+AGG | 0.296568 | 1_2:-50333047 | Msa0075210:three_prime_UTR |
| TGATTTCTATCAGCCACTTT+AGG | 0.310229 | 1_2:+50335624 | None:intergenic |
| TCTCTCTTACATTTCAAGAT+AGG | 0.312462 | 1_2:-50333001 | Msa0075210:three_prime_UTR |
| ATTAATAACGGCTGAAGATT+TGG | 0.314200 | 1_2:-50333256 | Msa0075210:CDS |
| GCTGAATTGATGAGCAAATA+TGG | 0.315960 | 1_2:-50337797 | Msa0075210:CDS |
| TGACAAAGTGAAGGCGATTT+TGG | 0.316363 | 1_2:-50333992 | Msa0075210:CDS |
| AGGCAGATTTAAATTATATT+GGG | 0.326373 | 1_2:-50334426 | Msa0075210:CDS |
| ATCCTCTGACCATTGTTGTT+AGG | 0.334086 | 1_2:+50338043 | None:intergenic |
| ACCACCGACATCCAGAAAAT+TGG | 0.337667 | 1_2:+50334315 | None:intergenic |
| CCTTCAAGACGAACTATTAC+TGG | 0.352447 | 1_2:+50333459 | None:intergenic |
| ATCTTACATTTGGTTCCATT+TGG | 0.353516 | 1_2:-50332813 | Msa0075210:three_prime_UTR |
| TTAGCCGGTGGACGAGGATT+GGG | 0.369874 | 1_2:-50337310 | Msa0075210:CDS |
| ACCGGGGAATGCATCTTTGA+TGG | 0.376142 | 1_2:+50337721 | None:intergenic |
| AAATAGTGTTGTAACTAAAC+TGG | 0.376409 | 1_2:+50333169 | None:intergenic |
| TGCAAAGGTTGTTGATGGTT+TGG | 0.380876 | 1_2:-50335649 | Msa0075210:CDS |
| TGAGGAAACCGCTACGCCTC+TGG | 0.390330 | 1_2:+50337763 | None:intergenic |
| TCTCAACATCCACGAGTATC+AGG | 0.395102 | 1_2:-50337953 | Msa0075210:intron |
| TCCTCTGACCATTGTTGTTA+GGG | 0.398230 | 1_2:+50338044 | None:intergenic |
| TACAAAACAGTCAGGTCCTC+AGG | 0.399292 | 1_2:-50336975 | Msa0075210:CDS |
| TTCTGCAAGGTCTTCAATGC+TGG | 0.400023 | 1_2:+50335811 | None:intergenic |
| TTTAGCCGGTGGACGAGGAT+TGG | 0.412502 | 1_2:-50337311 | Msa0075210:CDS |
| CTCTCTCCGTCGCCGGCACA+TGG | 0.417809 | 1_2:-50337996 | Msa0075210:CDS |
| GAACTTGATTCGATCGATAT+AGG | 0.423710 | 1_2:+50338097 | None:intergenic |
| CCAGTAATAGTTCGTCTTGA+AGG | 0.437190 | 1_2:-50333459 | Msa0075210:CDS |
| AATGTACTTTGCTATAACTC+TGG | 0.458552 | 1_2:-50336061 | Msa0075210:CDS |
| CAAACCTTAATAATCATGTC+TGG | 0.470096 | 1_2:+50335782 | None:intergenic |
| GTTGAACATGGTTCACCGAT+TGG | 0.478616 | 1_2:-50332931 | Msa0075210:three_prime_UTR |
| GATGCTGCAAAGGTTGTTGA+TGG | 0.481004 | 1_2:-50335654 | Msa0075210:CDS |
| GGCTGCATGGTGAATGGAGC+AGG | 0.482177 | 1_2:-50334388 | Msa0075210:CDS |
| GGATCGTAAGACTGCTGGTC+CGG | 0.485726 | 1_2:-50336040 | Msa0075210:intron |
| TAGCATCAGCAGCTACTAGT+TGG | 0.488406 | 1_2:+50335417 | None:intergenic |
| TTATCAGCTGTCTCCGCCAT+GGG | 0.493856 | 1_2:+50335440 | None:intergenic |
| CGCCTTCACTTTGTCATCAG+CGG | 0.496140 | 1_2:+50333999 | None:intergenic |
| GGATCAGGTGGCTGCTGCAA+AGG | 0.496306 | 1_2:-50334446 | Msa0075210:intron |
| GTTATCAGCTGTCTCCGCCA+TGG | 0.498469 | 1_2:+50335439 | None:intergenic |
| GAAGGCACCAATGTTGATCA+AGG | 0.499839 | 1_2:-50333441 | Msa0075210:CDS |
| AATAGTGAATGCTGCAAAGC+AGG | 0.513542 | 1_2:-50333923 | Msa0075210:intron |
| GCCATCAAAGATGCATTCCC+CGG | 0.516361 | 1_2:-50337722 | Msa0075210:CDS |
| GAAATTGGCTGCATGGTGAA+TGG | 0.525680 | 1_2:-50334394 | Msa0075210:CDS |
| GGTTCACCGATTGGACAAAA+CGG | 0.526837 | 1_2:-50332922 | Msa0075210:three_prime_UTR |
| GAGGAAACCGCTACGCCTCT+GGG | 0.528679 | 1_2:+50337764 | None:intergenic |
| GTTACAAATTATTGACGAGA+AGG | 0.535912 | 1_2:-50333139 | Msa0075210:three_prime_UTR |
| CTGTTGATTCTGCCATGTGC+CGG | 0.536899 | 1_2:+50337984 | None:intergenic |
| AAAATTCTAGGGTGTAGTAT+TGG | 0.538094 | 1_2:-50338165 | Msa0075210:five_prime_UTR |
| TGATGGTTTGGCTCCTAAAG+TGG | 0.542936 | 1_2:-50335637 | Msa0075210:CDS |
| ACTCTGGATCGTAAGACTGC+TGG | 0.543398 | 1_2:-50336045 | Msa0075210:CDS |
| AAGTGGTATGGCATTAATAA+CGG | 0.545339 | 1_2:-50333268 | Msa0075210:CDS |
| TAGCCGGTGGACGAGGATTG+GGG | 0.546458 | 1_2:-50337309 | Msa0075210:CDS |
| TCTCGCTCTCTCTCCGTCGC+CGG | 0.547633 | 1_2:-50338003 | Msa0075210:CDS |
| AAATGCTTTAATAGCCACTA+CGG | 0.558659 | 1_2:+50333086 | None:intergenic |
| GTTTCAACAGGAAAGTGGTA+TGG | 0.559539 | 1_2:-50333280 | Msa0075210:intron |
| AGTCCCCAATCCTCGTCCAC+CGG | 0.563023 | 1_2:+50337306 | None:intergenic |
| GGTTTATGCATGTGATTGCA+TGG | 0.563716 | 1_2:-50333026 | Msa0075210:three_prime_UTR |
| TGGTGCTGCCTCTGAAAACC+AGG | 0.565708 | 1_2:-50334296 | Msa0075210:intron |
| TTACAAATTATTGACGAGAA+GGG | 0.567596 | 1_2:-50333138 | Msa0075210:three_prime_UTR |
| ATACTAGTTACAAAACAGTC+AGG | 0.567777 | 1_2:-50336983 | Msa0075210:CDS |
| TGAATGTTTCAACAGGAAAG+TGG | 0.569848 | 1_2:-50333285 | Msa0075210:intron |
| ATTCTGCCATGTGCCGGCGA+CGG | 0.571062 | 1_2:+50337990 | None:intergenic |
| GACCAGGTTGAAGATATAGC+TGG | 0.576329 | 1_2:-50337241 | Msa0075210:intron |
| AAGTGTGATGTTATAGCAAG+TGG | 0.576361 | 1_2:-50333946 | Msa0075210:CDS |
| ATGGATATAATTAAGTTGCA+TGG | 0.580190 | 1_2:-50334349 | Msa0075210:CDS |
| CAACTTAATTATATCCATTG+TGG | 0.580693 | 1_2:+50334354 | None:intergenic |
| AACCTAATTGAACAATAATG+TGG | 0.581936 | 1_2:+50333045 | None:intergenic |
| TACTGATGAAGATGCTGCAA+AGG | 0.593207 | 1_2:-50335664 | Msa0075210:CDS |
| ACAAAACAGTCAGGTCCTCA+GGG | 0.599578 | 1_2:-50336974 | Msa0075210:CDS |
| GGATTGGGGACTTTCAAAAG+TGG | 0.603342 | 1_2:-50337295 | Msa0075210:CDS |
| ACTTCGTGATACAACACAAG+AGG | 0.604434 | 1_2:-50335345 | Msa0075210:CDS |
| TAACGTTCCCAGAGGCGTAG+CGG | 0.610301 | 1_2:-50337771 | Msa0075210:CDS |
| TCTTTCACAGATCAATCCCA+TGG | 0.610578 | 1_2:-50335456 | Msa0075210:intron |
| GCATTTAACTATACCTCTCG+AGG | 0.610638 | 1_2:+50335320 | None:intergenic |
| TCAAGGGAAAAGCATTCTGA+AGG | 0.611993 | 1_2:-50333424 | Msa0075210:intron |
| TATCTCTTTCTGGCGATATG+CGG | 0.620041 | 1_2:+50335373 | None:intergenic |
| AAAATACAGTCTGTTGAACA+TGG | 0.620909 | 1_2:-50332943 | Msa0075210:three_prime_UTR |
| AGATGGAGAAATTGGCTGCA+TGG | 0.622314 | 1_2:-50334401 | Msa0075210:CDS |
| AAGGCACCAATGTTGATCAA+GGG | 0.623746 | 1_2:-50333440 | Msa0075210:CDS |
| CCGACATCCAGAAAATTGGC+AGG | 0.624013 | 1_2:+50334319 | None:intergenic |
| AACCGCTGATGACAAAGTGA+AGG | 0.632167 | 1_2:-50334001 | Msa0075210:CDS |
| TGCATTCCCCGGTCAAAACG+AGG | 0.636965 | 1_2:-50337711 | Msa0075210:intron |
| AGGGTTAGCAATGGCCACAA+TGG | 0.643855 | 1_2:-50334368 | Msa0075210:CDS |
| CGAGAGGGACCTGATACTCG+TGG | 0.643858 | 1_2:+50337944 | None:intergenic |
| ACCCTAACAACAATGGTCAG+AGG | 0.649848 | 1_2:-50338045 | Msa0075210:exon |
| GAATGGAGCAGGGTTAGCAA+TGG | 0.649914 | 1_2:-50334377 | Msa0075210:CDS |
| GCACATTGTTAAGACTGACC+AGG | 0.652128 | 1_2:-50337257 | Msa0075210:CDS |
| TACCAGCTATATCTTCAACC+TGG | 0.653753 | 1_2:+50337239 | None:intergenic |
| ATCCAAAACCCTAACAACAA+TGG | 0.659235 | 1_2:-50338052 | Msa0075210:exon |
| TCTTCTCATTGAATCCGTAG+TGG | 0.667087 | 1_2:-50333100 | Msa0075210:three_prime_UTR |
| GATACTCGTGGATGTTGAGA+CGG | 0.670255 | 1_2:+50337956 | None:intergenic |
| AACACAAGAGGATCCTCGAG+AGG | 0.699355 | 1_2:-50335333 | Msa0075210:intron |
| ACTCGTGGATGTTGAGACGG+CGG | 0.714705 | 1_2:+50337959 | None:intergenic |
| GATATAATTAAGTTGCATGG+CGG | 0.729232 | 1_2:-50334346 | Msa0075210:CDS |
| GCTGCATGGTGAATGGAGCA+GGG | 0.729760 | 1_2:-50334387 | Msa0075210:CDS |
| TTCACAGATCAATCCCATGG+CGG | 0.738791 | 1_2:-50335453 | Msa0075210:intron |
| TATGGAGTTAACGTTCCCAG+AGG | 0.766145 | 1_2:-50337779 | Msa0075210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAATAAAATAAAAAA+AGG | + | chr1_2:50337388-50337407 | None:intergenic | 0.0% |
| !! | GAAATAAAAATAAAAATTCT+AGG | - | chr1_2:50332754-50332773 | Msa0075210:three_prime_UTR | 10.0% |
| !! | AATAAATTAATACTTATGAA+TGG | + | chr1_2:50333806-50333825 | None:intergenic | 10.0% |
| !! | ATAAAAATAAAAAATTCAGT+TGG | + | chr1_2:50334477-50334496 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTAACTAATTG+AGG | - | chr1_2:50333348-50333367 | Msa0075210:intron | 15.0% |
| !!! | ATTAAAACATTTTGCAATTA+TGG | + | chr1_2:50333392-50333411 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTGATTTTTTTT+TGG | - | chr1_2:50333873-50333892 | Msa0075210:intron | 15.0% |
| !!! | GTATGCATTTTAAAATAAAA+TGG | + | chr1_2:50334700-50334719 | None:intergenic | 15.0% |
| !! | GTATGTAAAAAAATAAAAAG+TGG | + | chr1_2:50334736-50334755 | None:intergenic | 15.0% |
| !!! | AAAGTATGATTTTAATAATC+AGG | + | chr1_2:50336392-50336411 | None:intergenic | 15.0% |
| !! | ATTATATAAAACTGCTAATA+AGG | + | chr1_2:50337165-50337184 | None:intergenic | 15.0% |
| !!! | TTATTAGCAGTTTTATATAA+TGG | - | chr1_2:50337164-50337183 | Msa0075210:intron | 15.0% |
| !!! | TTTTATATAATGGTTTTGTT+TGG | - | chr1_2:50337174-50337193 | Msa0075210:intron | 15.0% |
| !!! | TTATTTTATTTTTAAAGCAC+TGG | - | chr1_2:50337392-50337411 | Msa0075210:intron | 15.0% |
| !!! | TATTTTATTTTTAAAGCACT+GGG | - | chr1_2:50337393-50337412 | Msa0075210:intron | 15.0% |
| !! | TTCAAATTTGAATGTTTAAT+TGG | - | chr1_2:50338075-50338094 | Msa0075210:five_prime_UTR | 15.0% |
| !!! | TAAAGTTTTTATCTTACATT+TGG | - | chr1_2:50338108-50338127 | Msa0075210:five_prime_UTR | 15.0% |
| !!! | TTTTCAATTTTCGTGAAATT+AGG | - | chr1_2:50333109-50333128 | Msa0075210:three_prime_UTR | 20.0% |
| !!! | TTTCAATTTTCGTGAAATTA+GGG | - | chr1_2:50333110-50333129 | Msa0075210:three_prime_UTR | 20.0% |
| !!! | AAAATGTTTTAATGCATGTT+TGG | - | chr1_2:50333399-50333418 | Msa0075210:intron | 20.0% |
| !!! | AGTATAACCTTTAAAATTCA+CGG | + | chr1_2:50333460-50333479 | None:intergenic | 20.0% |
| !! | CATCTTATATAGAATTAGAA+AGG | + | chr1_2:50333778-50333797 | None:intergenic | 20.0% |
| !! | TATTCAATTTGAATTTAGAG+AGG | - | chr1_2:50333822-50333841 | Msa0075210:intron | 20.0% |
| !!! | ACTTGATAATCTAGATTTTT+TGG | - | chr1_2:50333859-50333878 | Msa0075210:intron | 20.0% |
| !!! | TTTTAGAGAACAAAATTGTT+TGG | + | chr1_2:50334052-50334071 | None:intergenic | 20.0% |
| !!! | AAAGTTTAGTCATTTTTTTC+TGG | - | chr1_2:50334253-50334272 | Msa0075210:intron | 20.0% |
| !! | TATACACTTAAAACCATTTA+TGG | - | chr1_2:50334534-50334553 | Msa0075210:intron | 20.0% |
| !! | TTAAAACCATTTATGGTATT+TGG | - | chr1_2:50334541-50334560 | Msa0075210:intron | 20.0% |
| !! | GTACATATAGATATAACAAT+TGG | + | chr1_2:50334575-50334594 | None:intergenic | 20.0% |
| !! | ATACATAGAATATATATGCA+AGG | - | chr1_2:50334752-50334771 | Msa0075210:intron | 20.0% |
| !! | TACATAGAATATATATGCAA+GGG | - | chr1_2:50334753-50334772 | Msa0075210:intron | 20.0% |
| !! | TTATTATTGGTCAAATTTAG+AGG | + | chr1_2:50335028-50335047 | None:intergenic | 20.0% |
| !! | CTTATTATTGCTTGTAAAAA+GGG | - | chr1_2:50335092-50335111 | Msa0075210:intron | 20.0% |
| !!! | ATTTCTGTTTTATATTACAC+AGG | - | chr1_2:50335640-50335659 | Msa0075210:CDS | 20.0% |
| !! | CAATATAAGTTATTATTGTG+TGG | + | chr1_2:50335869-50335888 | None:intergenic | 20.0% |
| !! | AAGGCAGATTTAAATTATAT+TGG | - | chr1_2:50336504-50336523 | Msa0075210:intron | 20.0% |
| !! | AGGCAGATTTAAATTATATT+GGG | - | chr1_2:50336505-50336524 | Msa0075210:intron | 20.0% |
| !!! | TTAAATTATATTGGGTTAGA+TGG | - | chr1_2:50336513-50336532 | Msa0075210:intron | 20.0% |
| !!! | AGAATAAAGCTGTTTTTAAA+CGG | + | chr1_2:50337076-50337095 | None:intergenic | 20.0% |
| !!! | TTTGAAGCATTTTTATATAG+TGG | - | chr1_2:50337202-50337221 | Msa0075210:intron | 20.0% |
| !!! | TTTTATATAGTGGTTTTGTT+TGG | - | chr1_2:50337212-50337231 | Msa0075210:intron | 20.0% |
| !!! | ATTTTATTTTTAAAGCACTG+GGG | - | chr1_2:50337394-50337413 | Msa0075210:intron | 20.0% |
| !! | TGAAAAAAAACTTTACCAAA+TGG | + | chr1_2:50338136-50338155 | None:intergenic | 20.0% |
| !!! | TTTGGTAAAGTTTTTTTTCA+AGG | - | chr1_2:50338136-50338155 | Msa0075210:five_prime_UTR | 20.0% |
| ! | TATGGAAAACTTCATAACAA+AGG | + | chr1_2:50333374-50333393 | None:intergenic | 25.0% |
| !! | TAGCTTTTACAAAATCACAA+TGG | - | chr1_2:50333483-50333502 | Msa0075210:intron | 25.0% |
| ! | TATATAGAATTAGAAAGGCA+TGG | + | chr1_2:50333773-50333792 | None:intergenic | 25.0% |
| ! | TTTGAATTTAGAGAGGTTAT+AGG | - | chr1_2:50333829-50333848 | Msa0075210:intron | 25.0% |
| !!! | TTGGTGATTTTTTTTTGGTT+TGG | - | chr1_2:50333878-50333897 | Msa0075210:intron | 25.0% |
| !!! | TTTGTCATTGTTGTTTTTTC+AGG | - | chr1_2:50333909-50333928 | Msa0075210:intron | 25.0% |
| !!! | TTGTCATTGTTGTTTTTTCA+GGG | - | chr1_2:50333910-50333929 | Msa0075210:intron | 25.0% |
| !! | TTCTCTAAAAATCGAAATTC+TGG | - | chr1_2:50334062-50334081 | Msa0075210:intron | 25.0% |
| !! | TATTTGAAATTTACACCCTT+TGG | - | chr1_2:50334150-50334169 | Msa0075210:intron | 25.0% |
| !!! | ATGGTTTTAAGTGTATAACT+TGG | + | chr1_2:50334531-50334550 | None:intergenic | 25.0% |
| ! | AAAAACCACTTAGAATCTAA+CGG | + | chr1_2:50334600-50334619 | None:intergenic | 25.0% |
| ! | ACATAGAATATATATGCAAG+GGG | - | chr1_2:50334754-50334773 | Msa0075210:intron | 25.0% |
| ! | CTGTAAAAAAATTAGACGAT+TGG | + | chr1_2:50334815-50334834 | None:intergenic | 25.0% |
| !!! | CAATCGTCTAATTTTTTTAC+AGG | - | chr1_2:50334813-50334832 | Msa0075210:intron | 25.0% |
| ! | TAAAGCTAATATACTGACAT+AGG | + | chr1_2:50334924-50334943 | None:intergenic | 25.0% |
| ! | GCTTATTATTGCTTGTAAAA+AGG | - | chr1_2:50335091-50335110 | Msa0075210:intron | 25.0% |
| ! | ATTTCCAGACATGATTATTA+AGG | - | chr1_2:50335145-50335164 | Msa0075210:intron | 25.0% |
| !! | AACATCTTTTGTAACAATCA+GGG | - | chr1_2:50335807-50335826 | Msa0075210:CDS | 25.0% |
| !! | CATTTTATTCAGGACAATTT+TGG | + | chr1_2:50336015-50336034 | None:intergenic | 25.0% |
| ! | AATTGTCCTGAATAAAATGT+TGG | - | chr1_2:50336016-50336035 | Msa0075210:intron | 25.0% |
| ! | AAATACATCATGTGAAATCT+TGG | + | chr1_2:50336366-50336385 | None:intergenic | 25.0% |
| ! | AACTGATGATAAGAAACAAA+AGG | + | chr1_2:50336421-50336440 | None:intergenic | 25.0% |
| !!! | TGTGTCTTTTAACTTTTTTC+TGG | - | chr1_2:50336464-50336483 | Msa0075210:intron | 25.0% |
| !!! | TTTTAACTTTTTTCTGGATC+AGG | - | chr1_2:50336470-50336489 | Msa0075210:intron | 25.0% |
| ! | CAACTTAATTATATCCATTG+TGG | + | chr1_2:50336580-50336599 | None:intergenic | 25.0% |
| !! | ATGGATATAATTAAGTTGCA+TGG | - | chr1_2:50336582-50336601 | Msa0075210:intron | 25.0% |
| ! | CATATCAATCTTATTGATGT+AGG | + | chr1_2:50336702-50336721 | None:intergenic | 25.0% |
| ! | ATTTGAACAAAAACATCTCA+AGG | + | chr1_2:50336865-50336884 | None:intergenic | 25.0% |
| ! | TTACTGTAATTATGTGAATC+AGG | - | chr1_2:50336885-50336904 | Msa0075210:intron | 25.0% |
| ! | TGGAACTATTTGATATTGAA+AGG | - | chr1_2:50337232-50337251 | Msa0075210:intron | 25.0% |
| !!! | TTTAATTTTGATCTATGACG+TGG | - | chr1_2:50337294-50337313 | Msa0075210:CDS | 25.0% |
| !!! | TTAATTTTGATCTATGACGT+GGG | - | chr1_2:50337295-50337314 | Msa0075210:CDS | 25.0% |
| !!! | TTCTCTTGCTGTTATTTTTT+AGG | - | chr1_2:50337435-50337454 | Msa0075210:intron | 25.0% |
| !!! | ACAAACCATCTCTTTTAAAA+AGG | - | chr1_2:50337559-50337578 | Msa0075210:intron | 25.0% |
| ! | AAATAGTGTTGTAACTAAAC+TGG | + | chr1_2:50337765-50337784 | None:intergenic | 25.0% |
| ! | TTACAAATTATTGACGAGAA+GGG | - | chr1_2:50337793-50337812 | Msa0075210:CDS | 25.0% |
| ! | TTCCACATTATTGTTCAATT+AGG | - | chr1_2:50337884-50337903 | Msa0075210:intron | 25.0% |
| ! | AACCTAATTGAACAATAATG+TGG | + | chr1_2:50337889-50337908 | None:intergenic | 25.0% |
| !! | TGAGGATCTTCAATTTATTT+TGG | - | chr1_2:50338043-50338062 | Msa0075210:exon | 25.0% |
| !!! | TCTTCAATTTATTTTGGTAG+AGG | - | chr1_2:50338049-50338068 | Msa0075210:exon | 25.0% |
| !! | AAAATTCTAGGGTGTAGTAT+TGG | - | chr1_2:50332766-50332785 | Msa0075210:three_prime_UTR | 30.0% |
| TATAGGTCTTTCTTCAACTA+TGG | + | chr1_2:50332820-50332839 | None:intergenic | 30.0% | |
| AATTATGGTCTACAGAATCA+TGG | + | chr1_2:50333250-50333269 | None:intergenic | 30.0% | |
| !! | GTTAAGAGTCAAATTTTAGC+CGG | - | chr1_2:50333606-50333625 | Msa0075210:intron | 30.0% |
| ! | ACTTTCAAAAGTGGTTTTCA+GGG | - | chr1_2:50333645-50333664 | Msa0075210:intron | 30.0% |
| TTGAACTGAGAAACAACAAA+GGG | + | chr1_2:50333727-50333746 | None:intergenic | 30.0% | |
| ATTGAACTGAGAAACAACAA+AGG | + | chr1_2:50333728-50333747 | None:intergenic | 30.0% | |
| ATGGACATGAAATGAAAACA+AGG | + | chr1_2:50333754-50333773 | None:intergenic | 30.0% | |
| ATACTAGTTACAAAACAGTC+AGG | - | chr1_2:50333948-50333967 | Msa0075210:CDS | 30.0% | |
| TGTAAAGAAAAAAAGTCCCA+CGG | + | chr1_2:50334182-50334201 | None:intergenic | 30.0% | |
| TTTACATGCAATATGTCTGT+CGG | - | chr1_2:50334196-50334215 | Msa0075210:intron | 30.0% | |
| !! | TATTTTTAAAAGTGGCCAAC+TGG | - | chr1_2:50334494-50334513 | Msa0075210:intron | 30.0% |
| AACCATTTATGGTATTTGGT+AGG | - | chr1_2:50334545-50334564 | Msa0075210:intron | 30.0% | |
| !! | AGTGGTTTTTGTATTGATCA+TGG | - | chr1_2:50334610-50334629 | Msa0075210:intron | 30.0% |
| ! | GGAAGTAAATTTTCGTCAAT+TGG | - | chr1_2:50334631-50334650 | Msa0075210:intron | 30.0% |
| CATAGAATATATATGCAAGG+GGG | - | chr1_2:50334755-50334774 | Msa0075210:intron | 30.0% | |
| ! | AATGTACTTTGCTATAACTC+TGG | - | chr1_2:50334870-50334889 | Msa0075210:intron | 30.0% |
| ATTATTGCTTGTAAAAAGGG+AGG | - | chr1_2:50335095-50335114 | Msa0075210:intron | 30.0% | |
| CAAACCTTAATAATCATGTC+TGG | + | chr1_2:50335152-50335171 | None:intergenic | 30.0% | |
| GAAGTTTGAATATCTCTTTC+TGG | + | chr1_2:50335571-50335590 | None:intergenic | 30.0% | |
| ! | TTGGGTTCAATTCACATTTT+GGG | - | chr1_2:50335747-50335766 | Msa0075210:intron | 30.0% |
| AGATGTTCTACAATATTGAG+CGG | + | chr1_2:50335794-50335813 | None:intergenic | 30.0% | |
| ! | GAACATCTTTTGTAACAATC+AGG | - | chr1_2:50335806-50335825 | Msa0075210:CDS | 30.0% |
| TCTGCATGTAAACCAAATAT+TGG | - | chr1_2:50335955-50335974 | Msa0075210:intron | 30.0% | |
| CTGCATGTAAACCAAATATT+GGG | - | chr1_2:50335956-50335975 | Msa0075210:intron | 30.0% | |
| ATGTAAACCAAATATTGGGT+TGG | - | chr1_2:50335960-50335979 | Msa0075210:intron | 30.0% | |
| ACCTTGTCGAAATAATAACT+GGG | + | chr1_2:50335986-50336005 | None:intergenic | 30.0% | |
| ! | CACAAACCAACATTTTATTC+AGG | + | chr1_2:50336025-50336044 | None:intergenic | 30.0% |
| TTGTGCTTATGATACAGTTA+TGG | - | chr1_2:50336159-50336178 | Msa0075210:intron | 30.0% | |
| TATGAAACAGGATGATATCT+TGG | + | chr1_2:50336212-50336231 | None:intergenic | 30.0% | |
| ! | TTAAGCTAGGCTTTATGTTT+AGG | + | chr1_2:50336241-50336260 | None:intergenic | 30.0% |
| TGTATGTAGCTAATTAAGCT+AGG | + | chr1_2:50336254-50336273 | None:intergenic | 30.0% | |
| TTGTGCTTATGATACAGTTA+AGG | - | chr1_2:50336159-50336178 | Msa0075210:intron | 30.0% | |
| ! | GATATAATTAAGTTGCATGG+CGG | - | chr1_2:50336585-50336604 | Msa0075210:intron | 30.0% |
| ATAAAAACCCTTGGAATTTC+AGG | + | chr1_2:50336781-50336800 | None:intergenic | 30.0% | |
| ! | GCTTTTCTAATAAAAACCCT+TGG | + | chr1_2:50336790-50336809 | None:intergenic | 30.0% |
| GTTCATTCTCTATCATATGT+AGG | + | chr1_2:50337103-50337122 | None:intergenic | 30.0% | |
| ACATATGATAGAGAATGAAC+AGG | - | chr1_2:50337103-50337122 | Msa0075210:intron | 30.0% | |
| CATATGATAGAGAATGAACA+GGG | - | chr1_2:50337104-50337123 | Msa0075210:intron | 30.0% | |
| TGGGTTTAGATTCTTGATAT+TGG | - | chr1_2:50337314-50337333 | Msa0075210:CDS | 30.0% | |
| !! | TGCTTCCTTTTTAAAAGAGA+TGG | + | chr1_2:50337567-50337586 | None:intergenic | 30.0% |
| TTCATTGTGAATGTTTCAAC+AGG | - | chr1_2:50337639-50337658 | Msa0075210:intron | 30.0% | |
| AAGTGGTATGGCATTAATAA+CGG | - | chr1_2:50337663-50337682 | Msa0075210:intron | 30.0% | |
| ATTAATAACGGCTGAAGATT+TGG | - | chr1_2:50337675-50337694 | Msa0075210:intron | 30.0% | |
| GTTACAAATTATTGACGAGA+AGG | - | chr1_2:50337792-50337811 | Msa0075210:CDS | 30.0% | |
| AAATGCTTTAATAGCCACTA+CGG | + | chr1_2:50337848-50337867 | None:intergenic | 30.0% | |
| !! | TGTGGAAAGTGTTTACTTAT+TGG | + | chr1_2:50337871-50337890 | None:intergenic | 30.0% |
| TCTCTCTTACATTTCAAGAT+AGG | - | chr1_2:50337930-50337949 | Msa0075210:intron | 30.0% | |
| ! | GACTGTATTTTCATGTTTAC+TGG | + | chr1_2:50337979-50337998 | None:intergenic | 30.0% |
| AAAATACAGTCTGTTGAACA+TGG | - | chr1_2:50337988-50338007 | Msa0075210:CDS | 30.0% | |
| !!! | AAAACGGCTGATTTTAATTG+AGG | - | chr1_2:50338025-50338044 | Msa0075210:CDS | 30.0% |
| ! | ATCTTACATTTGGTTCCATT+TGG | - | chr1_2:50338118-50338137 | Msa0075210:five_prime_UTR | 30.0% |
| ! | GAACTTGATTCGATCGATAT+AGG | + | chr1_2:50332837-50332856 | None:intergenic | 35.0% |
| !!! | TTGTTGTTAGGGTTTTGGAT+CGG | + | chr1_2:50332879-50332898 | None:intergenic | 35.0% |
| ATCCAAAACCCTAACAACAA+TGG | - | chr1_2:50332879-50332898 | Msa0075210:three_prime_UTR | 35.0% | |
| TGAATAAACGAATCTCGAGA+GGG | + | chr1_2:50333005-50333024 | None:intergenic | 35.0% | |
| GCTGAATTGATGAGCAAATA+TGG | - | chr1_2:50333134-50333153 | Msa0075210:three_prime_UTR | 35.0% | |
| ! | TTTTCTGACTTCTTCAACTG+AGG | + | chr1_2:50333189-50333208 | None:intergenic | 35.0% |
| ! | TCAAGTGATGGTGTGAATTA+TGG | + | chr1_2:50333265-50333284 | None:intergenic | 35.0% |
| TTTCAGCAAACATCAAGTGA+TGG | + | chr1_2:50333277-50333296 | None:intergenic | 35.0% | |
| ! | TGAGCTACCGTGAATTTTAA+AGG | - | chr1_2:50333450-50333469 | Msa0075210:CDS | 35.0% |
| ! | GACTTTCAAAAGTGGTTTTC+AGG | - | chr1_2:50333644-50333663 | Msa0075210:intron | 35.0% |
| !!! | TTTTTTCAGGGAAGATGCTT+GGG | - | chr1_2:50333922-50333941 | Msa0075210:intron | 35.0% |
| ! | TTGCTAACAATTTTTCCCTG+AGG | + | chr1_2:50333975-50333994 | None:intergenic | 35.0% |
| TCAGGGAAAAATTGTTAGCA+AGG | - | chr1_2:50333974-50333993 | Msa0075210:CDS | 35.0% | |
| TTGGATAACAAATGTCCAGT+TGG | + | chr1_2:50334512-50334531 | None:intergenic | 35.0% | |
| AGCCTACCAAATACCATAAA+TGG | + | chr1_2:50334550-50334569 | None:intergenic | 35.0% | |
| TACTTCCGTTAGATTCTAAG+TGG | - | chr1_2:50334592-50334611 | Msa0075210:intron | 35.0% | |
| ! | AGCACTTTAAGAATTGCTCA+TGG | - | chr1_2:50334662-50334681 | Msa0075210:intron | 35.0% |
| TACTGACATAGGAAACTTAC+CGG | + | chr1_2:50334913-50334932 | None:intergenic | 35.0% | |
| GCAACGTAGCTGTTTATTAT+TGG | + | chr1_2:50335041-50335060 | None:intergenic | 35.0% | |
| ! | TGTCTGGAAATTTTTCTGCA+AGG | + | chr1_2:50335136-50335155 | None:intergenic | 35.0% |
| ! | ATGCATTCCTTCTTTCTAGT+AGG | - | chr1_2:50335219-50335238 | Msa0075210:intron | 35.0% |
| !! | GTACCTGTTGATGTTTTTGA+AGG | - | chr1_2:50335241-50335260 | Msa0075210:intron | 35.0% |
| AGTCCTTCAAAAACATCAAC+AGG | + | chr1_2:50335247-50335266 | None:intergenic | 35.0% | |
| ! | TGATTTCTATCAGCCACTTT+AGG | + | chr1_2:50335310-50335329 | None:intergenic | 35.0% |
| ! | GTTGGGTTCAATTCACATTT+TGG | - | chr1_2:50335746-50335765 | Msa0075210:intron | 35.0% |
| GATGTTCTACAATATTGAGC+GGG | + | chr1_2:50335793-50335812 | None:intergenic | 35.0% | |
| GTTATTATTGTGTGGAGTAC+AGG | + | chr1_2:50335861-50335880 | None:intergenic | 35.0% | |
| GACCTTGTCGAAATAATAAC+TGG | + | chr1_2:50335987-50336006 | None:intergenic | 35.0% | |
| !! | TTAAGCTAGGCTCTAAGTTT+AGG | + | chr1_2:50336097-50336116 | None:intergenic | 35.0% |
| CGTAAGTAGCTAATTAAGCT+AGG | + | chr1_2:50336110-50336129 | None:intergenic | 35.0% | |
| !! | TTTAGGAGTGCTTATGAAAC+AGG | + | chr1_2:50336224-50336243 | None:intergenic | 35.0% |
| ! | ACTCTGATGCTTTTGATATC+TGG | - | chr1_2:50336287-50336306 | Msa0075210:intron | 35.0% |
| CTTATGATACAGTTAAGGAG+TGG | - | chr1_2:50336318-50336337 | Msa0075210:intron | 35.0% | |
| !!! | TAACTTTTTTCTGGATCAGG+TGG | - | chr1_2:50336473-50336492 | Msa0075210:intron | 35.0% |
| ! | ATTGGGTTAGATGGAGAAAT+TGG | - | chr1_2:50336522-50336541 | Msa0075210:intron | 35.0% |
| !! | ATACATTACCTGGTTTTCAG+AGG | + | chr1_2:50336646-50336665 | None:intergenic | 35.0% |
| CTTGTCTGTAATACATTACC+TGG | + | chr1_2:50336656-50336675 | None:intergenic | 35.0% | |
| ! | AGACAAGATTGCTCTCATTT+TGG | - | chr1_2:50336669-50336688 | Msa0075210:intron | 35.0% |
| TACAAACTGGTGTGTGATAT+AGG | + | chr1_2:50336741-50336760 | None:intergenic | 35.0% | |
| GCATTAACCTGAAATTCCAA+GGG | - | chr1_2:50336771-50336790 | Msa0075210:intron | 35.0% | |
| AGAGAACAAATCATTGAAGG+CGG | + | chr1_2:50336841-50336860 | None:intergenic | 35.0% | |
| CTGTAATTATGTGAATCAGG+TGG | - | chr1_2:50336888-50336907 | Msa0075210:intron | 35.0% | |
| !! | ATTTTGGTGAACATCTTTGG+TGG | - | chr1_2:50336955-50336974 | Msa0075210:intron | 35.0% |
| AAGTGTGATGTTATAGCAAG+TGG | - | chr1_2:50336985-50337004 | Msa0075210:CDS | 35.0% | |
| !! | AAACGGCGTCAATTTTGTTT+TGG | + | chr1_2:50337059-50337078 | None:intergenic | 35.0% |
| !!! | TATTTTTAAAGCACTGGGGT+TGG | - | chr1_2:50337398-50337417 | Msa0075210:intron | 35.0% |
| !!! | ATTTTTAAAGCACTGGGGTT+GGG | - | chr1_2:50337399-50337418 | Msa0075210:intron | 35.0% |
| TGAATGTTTCAACAGGAAAG+TGG | - | chr1_2:50337646-50337665 | Msa0075210:intron | 35.0% | |
| CGGATTCGATTGAGGAAAAA+TGG | + | chr1_2:50332859-50332878 | None:intergenic | 40.0% | |
| ! | TTTTGGATCGGATTCGATTG+AGG | + | chr1_2:50332867-50332886 | None:intergenic | 40.0% |
| !! | GACCATTGTTGTTAGGGTTT+TGG | + | chr1_2:50332884-50332903 | None:intergenic | 40.0% |
| ! | TCCTCTGACCATTGTTGTTA+GGG | + | chr1_2:50332890-50332909 | None:intergenic | 40.0% |
| ! | ATCCTCTGACCATTGTTGTT+AGG | + | chr1_2:50332891-50332910 | None:intergenic | 40.0% |
| GTGAATAAACGAATCTCGAG+AGG | + | chr1_2:50333006-50333025 | None:intergenic | 40.0% | |
| !! | ATGGATTACCTCGTTTTGAC+CGG | + | chr1_2:50333231-50333250 | None:intergenic | 40.0% |
| ATGCATGTTTGGTATCACGA+CGG | - | chr1_2:50333410-50333429 | Msa0075210:intron | 40.0% | |
| CTCATGTTCAGTATCACTGT+CGG | + | chr1_2:50333529-50333548 | None:intergenic | 40.0% | |
| ACAGTGATACTGAACATGAG+TGG | - | chr1_2:50333529-50333548 | Msa0075210:intron | 40.0% | |
| !!! | GGAGAATTTTGACTGTGATG+AGG | - | chr1_2:50333550-50333569 | Msa0075210:intron | 40.0% |
| !!! | ATTTTGACTGTGATGAGGAG+TGG | - | chr1_2:50333555-50333574 | Msa0075210:intron | 40.0% |
| AACTGGGATTATTGTGCAGT+TGG | - | chr1_2:50333581-50333600 | Msa0075210:intron | 40.0% | |
| !! | AAGAGTCAAATTTTAGCCGG+TGG | - | chr1_2:50333609-50333628 | Msa0075210:intron | 40.0% |
| !! | TTCAAAAGTGGTTTTCAGGG+AGG | - | chr1_2:50333648-50333667 | Msa0075210:intron | 40.0% |
| TACCAGCTATATCTTCAACC+TGG | + | chr1_2:50333695-50333714 | None:intergenic | 40.0% | |
| !!! | GTTTTTTCAGGGAAGATGCT+TGG | - | chr1_2:50333921-50333940 | Msa0075210:intron | 40.0% |
| AAGAAAAAAAGTCCCACGGT+GGG | + | chr1_2:50334178-50334197 | None:intergenic | 40.0% | |
| AAAGAAAAAAAGTCCCACGG+TGG | + | chr1_2:50334179-50334198 | None:intergenic | 40.0% | |
| TCATGAACACCAGACCAATT+TGG | - | chr1_2:50334339-50334358 | Msa0075210:CDS | 40.0% | |
| CATGAACACCAGACCAATTT+GGG | - | chr1_2:50334340-50334359 | Msa0075210:CDS | 40.0% | |
| TCATGAACACCAGACCAATT+TGG | - | chr1_2:50334339-50334358 | Msa0075210:CDS | 40.0% | |
| CATGAACACCAGACCAATTT+GGG | - | chr1_2:50334340-50334359 | Msa0075210:CDS | 40.0% | |
| AACTGGCAAACCGATACAAA+TGG | - | chr1_2:50334437-50334456 | Msa0075210:CDS | 40.0% | |
| ! | TCCAACGATGCCATTTGTAT+CGG | + | chr1_2:50334450-50334469 | None:intergenic | 40.0% |
| CTAGAAAGAAGGAATGCATC+AGG | + | chr1_2:50335218-50335237 | None:intergenic | 40.0% | |
| ACAGGTACCTACTAGAAAGA+AGG | + | chr1_2:50335229-50335248 | None:intergenic | 40.0% | |
| TACTGATGAAGATGCTGCAA+AGG | - | chr1_2:50335267-50335286 | Msa0075210:intron | 40.0% | |
| !! | TGCAAAGGTTGTTGATGGTT+TGG | - | chr1_2:50335282-50335301 | Msa0075210:intron | 40.0% |
| ! | TGATTCTGACTGCACTCTTT+TGG | - | chr1_2:50335369-50335388 | Msa0075210:CDS | 40.0% |
| TCTTTCACAGATCAATCCCA+TGG | - | chr1_2:50335475-50335494 | Msa0075210:intron | 40.0% | |
| ! | TATCTCTTTCTGGCGATATG+CGG | + | chr1_2:50335561-50335580 | None:intergenic | 40.0% |
| ACTTCGTGATACAACACAAG+AGG | - | chr1_2:50335586-50335605 | Msa0075210:CDS | 40.0% | |
| GCATTTAACTATACCTCTCG+AGG | + | chr1_2:50335614-50335633 | None:intergenic | 40.0% | |
| ! | TCAAGTTGTAATGACAGGGT+GGG | + | chr1_2:50335688-50335707 | None:intergenic | 40.0% |
| ! | GGACTCAAGTTGTAATGACA+GGG | + | chr1_2:50335692-50335711 | None:intergenic | 40.0% |
| ! | TGGACTCAAGTTGTAATGAC+AGG | + | chr1_2:50335693-50335712 | None:intergenic | 40.0% |
| TGTCATTACAACTTGAGTCC+AGG | - | chr1_2:50335692-50335711 | Msa0075210:CDS | 40.0% | |
| GTCATTACAACTTGAGTCCA+GGG | - | chr1_2:50335693-50335712 | Msa0075210:CDS | 40.0% | |
| TCATTACAACTTGAGTCCAG+GGG | - | chr1_2:50335694-50335713 | Msa0075210:intron | 40.0% | |
| CCCAACCCAAAAACATATCA+GGG | + | chr1_2:50335732-50335751 | None:intergenic | 40.0% | |
| !!! | CCCTGATATGTTTTTGGGTT+GGG | - | chr1_2:50335729-50335748 | Msa0075210:intron | 40.0% |
| ACCCAACCCAAAAACATATC+AGG | + | chr1_2:50335733-50335752 | None:intergenic | 40.0% | |
| GCCCAGTTATTATTTCGACA+AGG | - | chr1_2:50335982-50336001 | Msa0075210:intron | 40.0% | |
| CGTATAAGACAGGATGAGAT+GGG | + | chr1_2:50336070-50336089 | None:intergenic | 40.0% | |
| ! | TTTAGGAGTGCGTATAAGAC+AGG | + | chr1_2:50336080-50336099 | None:intergenic | 40.0% |
| !! | ACACTGTTGCTTTCGATATC+TGG | - | chr1_2:50336133-50336152 | Msa0075210:intron | 40.0% |
| TACAGTTATGGAGTGAAGTG+AGG | - | chr1_2:50336171-50336190 | Msa0075210:intron | 40.0% | |
| GAGTGAAGTGAGGTTCTATA+TGG | - | chr1_2:50336181-50336200 | Msa0075210:intron | 40.0% | |
| GGCATTAACCTGAAATTCCA+AGG | - | chr1_2:50336770-50336789 | Msa0075210:intron | 40.0% | |
| CTAGTGAGTAGCAACAACTA+AGG | + | chr1_2:50336815-50336834 | None:intergenic | 40.0% | |
| GGCAGAGAACAAATCATTGA+AGG | + | chr1_2:50336844-50336863 | None:intergenic | 40.0% | |
| ! | TGACAAAGTGAAGGCGATTT+TGG | - | chr1_2:50336939-50336958 | Msa0075210:intron | 40.0% |
| !! | GCGATTTTGGTGAACATCTT+TGG | - | chr1_2:50336952-50336971 | Msa0075210:intron | 40.0% |
| AATAGTGAATGCTGCAAAGC+AGG | - | chr1_2:50337008-50337027 | Msa0075210:intron | 40.0% | |
| CCTTCAAGACGAACTATTAC+TGG | + | chr1_2:50337475-50337494 | None:intergenic | 40.0% | |
| CCAGTAATAGTTCGTCTTGA+AGG | - | chr1_2:50337472-50337491 | Msa0075210:intron | 40.0% | |
| ! | AAGGCACCAATGTTGATCAA+GGG | - | chr1_2:50337491-50337510 | Msa0075210:intron | 40.0% |
| ! | GCTTTTCCCTTGATCAACAT+TGG | + | chr1_2:50337500-50337519 | None:intergenic | 40.0% |
| !! | TCAAGGGAAAAGCATTCTGA+AGG | - | chr1_2:50337507-50337526 | Msa0075210:intron | 40.0% |
| GTTTCAACAGGAAAGTGGTA+TGG | - | chr1_2:50337651-50337670 | Msa0075210:intron | 40.0% | |
| TCTTCTCATTGAATCCGTAG+TGG | - | chr1_2:50337831-50337850 | Msa0075210:intron | 40.0% | |
| GGTTTATGCATGTGATTGCA+TGG | - | chr1_2:50337905-50337924 | Msa0075210:intron | 40.0% | |
| !! | AATCAGCCGTTTTGTCCAAT+CGG | + | chr1_2:50338018-50338037 | None:intergenic | 40.0% |
| ACCCTAACAACAATGGTCAG+AGG | - | chr1_2:50332886-50332905 | Msa0075210:three_prime_UTR | 45.0% | |
| GATACTCGTGGATGTTGAGA+CGG | + | chr1_2:50332978-50332997 | None:intergenic | 45.0% | |
| TCTCAACATCCACGAGTATC+AGG | - | chr1_2:50332978-50332997 | Msa0075210:three_prime_UTR | 45.0% | |
| TATGGAGTTAACGTTCCCAG+AGG | - | chr1_2:50333152-50333171 | Msa0075210:three_prime_UTR | 45.0% | |
| !! | TGGATTACCTCGTTTTGACC+GGG | + | chr1_2:50333230-50333249 | None:intergenic | 45.0% |
| TGCATGTTTGGTATCACGAC+GGG | - | chr1_2:50333411-50333430 | Msa0075210:intron | 45.0% | |
| ! | CGACGGGTTTGTCAGAATTA+CGG | - | chr1_2:50333427-50333446 | Msa0075210:CDS | 45.0% |
| ACAATGGCTCAATGTGACTC+TGG | - | chr1_2:50333499-50333518 | Msa0075210:intron | 45.0% | |
| TGATGAGGAGTGGTGTAACT+GGG | - | chr1_2:50333565-50333584 | Msa0075210:intron | 45.0% | |
| TGGGATTATTGTGCAGTTGG+TGG | - | chr1_2:50333584-50333603 | Msa0075210:intron | 45.0% | |
| GGATTGGGGACTTTCAAAAG+TGG | - | chr1_2:50333636-50333655 | Msa0075210:intron | 45.0% | |
| GCACATTGTTAAGACTGACC+AGG | - | chr1_2:50333674-50333693 | Msa0075210:intron | 45.0% | |
| ! | GACCAGGTTGAAGATATAGC+TGG | - | chr1_2:50333690-50333709 | Msa0075210:intron | 45.0% |
| TACAAAACAGTCAGGTCCTC+AGG | - | chr1_2:50333956-50333975 | Msa0075210:CDS | 45.0% | |
| ACAAAACAGTCAGGTCCTCA+GGG | - | chr1_2:50333957-50333976 | Msa0075210:CDS | 45.0% | |
| ATGCAATATGTCTGTCGGAG+AGG | - | chr1_2:50334201-50334220 | Msa0075210:intron | 45.0% | |
| ! | TTTTTCTGGACTGATCCTGC+TGG | - | chr1_2:50334267-50334286 | Msa0075210:intron | 45.0% |
| CTGAAATCCAACGCCCAAAT+TGG | + | chr1_2:50334318-50334337 | None:intergenic | 45.0% | |
| CTGAAATCCAACGCCCAAAT+TGG | + | chr1_2:50334318-50334337 | None:intergenic | 45.0% | |
| CTGAAATCCAACGCCCAAAT+TGG | + | chr1_2:50334318-50334337 | None:intergenic | 45.0% | |
| AACCATCCAGCACTTGAAAC+TGG | - | chr1_2:50334420-50334439 | Msa0075210:CDS | 45.0% | |
| ACCGATACAAATGGCATCGT+TGG | - | chr1_2:50334446-50334465 | Msa0075210:intron | 45.0% | |
| TACAAATGGCATCGTTGGAC+TGG | - | chr1_2:50334451-50334470 | Msa0075210:intron | 45.0% | |
| TTCTGCAAGGTCTTCAATGC+TGG | + | chr1_2:50335123-50335142 | None:intergenic | 45.0% | |
| GATGCTGCAAAGGTTGTTGA+TGG | - | chr1_2:50335277-50335296 | Msa0075210:intron | 45.0% | |
| ! | TGATGGTTTGGCTCCTAAAG+TGG | - | chr1_2:50335294-50335313 | Msa0075210:intron | 45.0% |
| TTCACAGATCAATCCCATGG+CGG | - | chr1_2:50335478-50335497 | Msa0075210:intron | 45.0% | |
| TAGCATCAGCAGCTACTAGT+TGG | + | chr1_2:50335517-50335536 | None:intergenic | 45.0% | |
| ! | GTAATGACAGGGTGGGTTTA+GGG | + | chr1_2:50335681-50335700 | None:intergenic | 45.0% |
| ! | TGTAATGACAGGGTGGGTTT+AGG | + | chr1_2:50335682-50335701 | None:intergenic | 45.0% |
| ! | CTCAAGTTGTAATGACAGGG+TGG | + | chr1_2:50335689-50335708 | None:intergenic | 45.0% |
| ! | AGCCAGCCCTGATATGTTTT+TGG | - | chr1_2:50335723-50335742 | Msa0075210:intron | 45.0% |
| ! | GCCAGCCCTGATATGTTTTT+GGG | - | chr1_2:50335724-50335743 | Msa0075210:intron | 45.0% |
| ACCCAAAAACATATCAGGGC+TGG | + | chr1_2:50335728-50335747 | None:intergenic | 45.0% | |
| !!! | GCCCTGATATGTTTTTGGGT+TGG | - | chr1_2:50335728-50335747 | Msa0075210:intron | 45.0% |
| !! | CATTTTGGGTAAGCCGAAGT+CGG | - | chr1_2:50335761-50335780 | Msa0075210:intron | 45.0% |
| AACTGGGCCAACCCAATATT+TGG | + | chr1_2:50335970-50335989 | None:intergenic | 45.0% | |
| GCGTATAAGACAGGATGAGA+TGG | + | chr1_2:50336071-50336090 | None:intergenic | 45.0% | |
| TACAGTTAAGGAGTGGAGTG+AGG | - | chr1_2:50336325-50336344 | Msa0075210:intron | 45.0% | |
| !! | GAGTGGAGTGAGGTTCTAAA+TGG | - | chr1_2:50336335-50336354 | Msa0075210:intron | 45.0% |
| AGATGGAGAAATTGGCTGCA+TGG | - | chr1_2:50336530-50336549 | Msa0075210:intron | 45.0% | |
| GAAATTGGCTGCATGGTGAA+TGG | - | chr1_2:50336537-50336556 | Msa0075210:intron | 45.0% | |
| ! | CCTGCCAATTTTCTGGATGT+CGG | - | chr1_2:50336612-50336631 | Msa0075210:intron | 45.0% |
| ACCACCGACATCCAGAAAAT+TGG | + | chr1_2:50336619-50336638 | None:intergenic | 45.0% | |
| CACCAGTTTGTAGTCTGCTT+TGG | - | chr1_2:50336749-50336768 | Msa0075210:intron | 45.0% | |
| TGCCAAAGCAGACTACAAAC+TGG | + | chr1_2:50336754-50336773 | None:intergenic | 45.0% | |
| AACCGCTGATGACAAAGTGA+AGG | - | chr1_2:50336930-50336949 | Msa0075210:intron | 45.0% | |
| !! | GAAGGCACCAATGTTGATCA+AGG | - | chr1_2:50337490-50337509 | Msa0075210:intron | 45.0% |
| GTTGAACATGGTTCACCGAT+TGG | - | chr1_2:50338000-50338019 | Msa0075210:CDS | 45.0% | |
| ! | GGTTCACCGATTGGACAAAA+CGG | - | chr1_2:50338009-50338028 | Msa0075210:CDS | 45.0% |
| !! | AAATAAAAATAAAAATTCTA+GGG | - | chr1_2:50332755-50332774 | Msa0075210:three_prime_UTR | 5.0% |
| !!! | TTTATTTTTATTTTTAAAAG+TGG | - | chr1_2:50334486-50334505 | Msa0075210:intron | 5.0% |
| !! | CTGTTGATTCTGCCATGTGC+CGG | + | chr1_2:50332950-50332969 | None:intergenic | 50.0% |
| GCCATCAAAGATGCATTCCC+CGG | - | chr1_2:50333209-50333228 | Msa0075210:exon | 50.0% | |
| ACCGGGGAATGCATCTTTGA+TGG | + | chr1_2:50333213-50333232 | None:intergenic | 50.0% | |
| !! | GGATTACCTCGTTTTGACCG+GGG | + | chr1_2:50333229-50333248 | None:intergenic | 50.0% |
| GTGATGAGGAGTGGTGTAAC+TGG | - | chr1_2:50333564-50333583 | Msa0075210:intron | 50.0% | |
| !! | CAAATTTTAGCCGGTGGACG+AGG | - | chr1_2:50333615-50333634 | Msa0075210:intron | 50.0% |
| AGTTTACCAGTCCAACCAGC+AGG | + | chr1_2:50334285-50334304 | None:intergenic | 50.0% | |
| !! | TGCTGGTTGGACTGGTAAAC+TGG | - | chr1_2:50334284-50334303 | Msa0075210:intron | 50.0% |
| AACTGGCCACCAGACCAATT+TGG | - | chr1_2:50334301-50334320 | Msa0075210:CDS | 50.0% | |
| ACTGGCCACCAGACCAATTT+GGG | - | chr1_2:50334302-50334321 | Msa0075210:CDS | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | + | chr1_2:50334313-50334332 | None:intergenic | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | + | chr1_2:50334313-50334332 | None:intergenic | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | + | chr1_2:50334313-50334332 | None:intergenic | 50.0% | |
| !! | TGCCAGTTTCAAGTGCTGGA+TGG | + | chr1_2:50334425-50334444 | None:intergenic | 50.0% |
| ! | GGTTTGCCAGTTTCAAGTGC+TGG | + | chr1_2:50334429-50334448 | None:intergenic | 50.0% |
| ACTCTGGATCGTAAGACTGC+TGG | - | chr1_2:50334886-50334905 | Msa0075210:intron | 50.0% | |
| TTATCAGCTGTCTCCGCCAT+GGG | + | chr1_2:50335494-50335513 | None:intergenic | 50.0% | |
| AACACAAGAGGATCCTCGAG+AGG | - | chr1_2:50335598-50335617 | Msa0075210:CDS | 50.0% | |
| ! | GAATGGAGCAGGGTTAGCAA+TGG | - | chr1_2:50336554-50336573 | Msa0075210:intron | 50.0% |
| ! | AGGGTTAGCAATGGCCACAA+TGG | - | chr1_2:50336563-50336582 | Msa0075210:intron | 50.0% |
| ! | CGGTACTCCTGCCAATTTTC+TGG | - | chr1_2:50336605-50336624 | Msa0075210:intron | 50.0% |
| CCGACATCCAGAAAATTGGC+AGG | + | chr1_2:50336615-50336634 | None:intergenic | 50.0% | |
| ! | GCCAATTTTCTGGATGTCGG+TGG | - | chr1_2:50336615-50336634 | Msa0075210:intron | 50.0% |
| CGCCTTCACTTTGTCATCAG+CGG | + | chr1_2:50336935-50336954 | None:intergenic | 50.0% | |
| ACTCGTGGATGTTGAGACGG+CGG | + | chr1_2:50332975-50332994 | None:intergenic | 55.0% | |
| ! | TAACGTTCCCAGAGGCGTAG+CGG | - | chr1_2:50333160-50333179 | Msa0075210:three_prime_UTR | 55.0% |
| TGCATTCCCCGGTCAAAACG+AGG | - | chr1_2:50333220-50333239 | Msa0075210:CDS | 55.0% | |
| TTTAGCCGGTGGACGAGGAT+TGG | - | chr1_2:50333620-50333639 | Msa0075210:intron | 55.0% | |
| TTAGCCGGTGGACGAGGATT+GGG | - | chr1_2:50333621-50333640 | Msa0075210:intron | 55.0% | |
| TCTGGACTGATCCTGCTGGT+TGG | - | chr1_2:50334271-50334290 | Msa0075210:intron | 55.0% | |
| ! | ACTGATCCTGCTGGTTGGAC+TGG | - | chr1_2:50334276-50334295 | Msa0075210:intron | 55.0% |
| ! | CAACGCCCAAATTGGTCTGG+TGG | + | chr1_2:50334310-50334329 | None:intergenic | 55.0% |
| CACCAGACCAATTTGGGCGT+TGG | - | chr1_2:50334308-50334327 | Msa0075210:CDS | 55.0% | |
| CACCAGACCAATTTGGGCGT+TGG | - | chr1_2:50334308-50334327 | Msa0075210:CDS | 55.0% | |
| CACCAGACCAATTTGGGCGT+TGG | - | chr1_2:50334308-50334327 | Msa0075210:CDS | 55.0% | |
| GGATCGTAAGACTGCTGGTC+CGG | - | chr1_2:50334891-50334910 | Msa0075210:intron | 55.0% | |
| GTTATCAGCTGTCTCCGCCA+TGG | + | chr1_2:50335495-50335514 | None:intergenic | 55.0% | |
| GCTGCATGGTGAATGGAGCA+GGG | - | chr1_2:50336544-50336563 | Msa0075210:intron | 55.0% | |
| !! | TGGTGCTGCCTCTGAAAACC+AGG | - | chr1_2:50336635-50336654 | Msa0075210:intron | 55.0% |
| ! | ATTCTGCCATGTGCCGGCGA+CGG | + | chr1_2:50332944-50332963 | None:intergenic | 60.0% |
| CGAGAGGGACCTGATACTCG+TGG | + | chr1_2:50332990-50333009 | None:intergenic | 60.0% | |
| GAGGAAACCGCTACGCCTCT+GGG | + | chr1_2:50333170-50333189 | None:intergenic | 60.0% | |
| TGAGGAAACCGCTACGCCTC+TGG | + | chr1_2:50333171-50333190 | None:intergenic | 60.0% | |
| TAGCCGGTGGACGAGGATTG+GGG | - | chr1_2:50333622-50333641 | Msa0075210:intron | 60.0% | |
| AGTCCCCAATCCTCGTCCAC+CGG | + | chr1_2:50333628-50333647 | None:intergenic | 60.0% | |
| ACACCCTTTGGATCCCACCG+TGG | - | chr1_2:50334162-50334181 | Msa0075210:intron | 60.0% | |
| CACCCTTTGGATCCCACCGT+GGG | - | chr1_2:50334163-50334182 | Msa0075210:intron | 60.0% | |
| GTCCCACGGTGGGATCCAAA+GGG | + | chr1_2:50334168-50334187 | None:intergenic | 60.0% | |
| AGTCCCACGGTGGGATCCAA+AGG | + | chr1_2:50334169-50334188 | None:intergenic | 60.0% | |
| !! | AGGGCTGGCTAGAAAACCCC+TGG | + | chr1_2:50335713-50335732 | None:intergenic | 60.0% |
| !! | GAGCGGGATAGTGCCGACTT+CGG | + | chr1_2:50335777-50335796 | None:intergenic | 60.0% |
| GGATCAGGTGGCTGCTGCAA+AGG | - | chr1_2:50336485-50336504 | Msa0075210:intron | 60.0% | |
| GGCTGCATGGTGAATGGAGC+AGG | - | chr1_2:50336543-50336562 | Msa0075210:intron | 60.0% | |
| TCTCGCTCTCTCTCCGTCGC+CGG | - | chr1_2:50332928-50332947 | Msa0075210:three_prime_UTR | 65.0% | |
| CTCTCTCCGTCGCCGGCACA+TGG | - | chr1_2:50332935-50332954 | Msa0075210:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 50332744 | 50338209 | 50332744 | ID=Msa0075210;Name=Msa0075210 |
| chr1_2 | mRNA | 50332744 | 50338209 | 50332744 | ID=Msa0075210-mRNA-1;Parent=Msa0075210;Name=Msa0075210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=154|1|1|1|1|1|12|474|421 |
| chr1_2 | exon | 50332744 | 50333292 | 50332744 | ID=Msa0075210-mRNA-1:exon:15513;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50333425 | 50333496 | 50333425 | ID=Msa0075210-mRNA-1:exon:15512;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50333924 | 50334046 | 50333924 | ID=Msa0075210-mRNA-1:exon:15511;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50334297 | 50334461 | 50334297 | ID=Msa0075210-mRNA-1:exon:15510;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50335334 | 50335468 | 50335334 | ID=Msa0075210-mRNA-1:exon:15509;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50335560 | 50335712 | 50335560 | ID=Msa0075210-mRNA-1:exon:15508;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50335787 | 50335861 | 50335787 | ID=Msa0075210-mRNA-1:exon:15507;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50336041 | 50336118 | 50336041 | ID=Msa0075210-mRNA-1:exon:15506;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50336958 | 50337022 | 50336958 | ID=Msa0075210-mRNA-1:exon:15505;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50337242 | 50337353 | 50337242 | ID=Msa0075210-mRNA-1:exon:15504;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50337712 | 50337822 | 50337712 | ID=Msa0075210-mRNA-1:exon:15503;Parent=Msa0075210-mRNA-1 |
| chr1_2 | exon | 50337954 | 50338209 | 50337954 | ID=Msa0075210-mRNA-1:exon:15502;Parent=Msa0075210-mRNA-1 |
| chr1_2 | five_prime_UTR | 50338056 | 50338209 | 50338056 | ID=Msa0075210-mRNA-1:five_prime_utr;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50337954 | 50338055 | 50337954 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50337712 | 50337822 | 50337712 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50337242 | 50337353 | 50337242 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50336958 | 50337022 | 50336958 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50336041 | 50336118 | 50336041 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50335787 | 50335861 | 50335787 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50335560 | 50335712 | 50335560 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50335334 | 50335468 | 50335334 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50334297 | 50334461 | 50334297 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50333924 | 50334046 | 50333924 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50333425 | 50333496 | 50333425 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | CDS | 50333218 | 50333292 | 50333218 | ID=Msa0075210-mRNA-1:cds;Parent=Msa0075210-mRNA-1 |
| chr1_2 | three_prime_UTR | 50332744 | 50333217 | 50332744 | ID=Msa0075210-mRNA-1:three_prime_utr;Parent=Msa0075210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
